lowQualScore : 1111 1 1111 3333 222222 1 1 1 3333 1 11 22222 11 33333 1 1 1 222 33 444444444444444444444444444444444444444444444444444444444444444444 1 3333 111 1111 55555555555555555555555555 3333333333333333333333333333 4444444 222222 22222222 2 1 11111 555555555 1 1 1 4 1111111 33 44 2222222 2 22222 1 11111111 2222 1 8888888888888888888 222 111 111 22222222222222222222 11 1 2222222 444444444 11 77777777777777777 1
lowQualScore : 8 4444 0 2 3 7777 8888 3 222222 0 0 0 8888 77 7 44 77777 44 99999 7 3 3 3 555 33 777777777777777777777777777777777777777777777777777777777777777777 5 888 0 888 66 3333 5 333 0000 55555555555555555555555555 3333333333333333333333333333 5 0000000 5 77 5 5 111111 5 5 5 999 5 66666666 55 66 5 5 5 4 5 66 66 0 5 5 0 55 00000 2 5 5 66 000000000 66 5 5 5 5 5 1 5 5 1 5 5 5 5 5 0 7777777 66 0 77 77 5 1 55 99 2222222 99 7 0 5 3 44444 2 0 44 2 66666666 22 8888 3 6 8888888888888888888 333 000 2 4 777 77777777777777777777 8 0 11 8 3 5 5555555 111111111 88 66666666666666666 5 2
lowQualScore : . .... . . . .... .... . ...... . . . .... .. . .. ..... .. ..... . . . . ... .. .................................................................. . ... . ... .. .... . ... .... .......................... ............................ . ....... . .. . . ...... . . . ... . ........ .. .. . . . . . .. .. . . . . .. ..... . . . .. ......... .. . . . . . . . . . . . . . . . ....... .. . .. .. . . .. .. ....... .. . . . . ..... . . .. . ........ .. .... . . ................... ... ... . . ... .................... . . .. . . . ....... ......... .. ................. . .
lowQualScore : 8 0000 0 5 2 2222 2222 2 222222 0 0 0 0000 33 3 33 77777 00 77777 3 3 3 3 555 88 000000000000000000000000000000000000000000000000000000000000000000 0 888 0 888 44 4444 0 000 6666 66666666666666666666666666 4444444444444444444444444444 7 1111111 7 99 7 7 666666 0 0 0 444 0 00000000 11 99 0 0 0 1 0 99 55 4 0 0 0 44 44444 2 0 0 99 555555555 99 0 0 0 0 0 7 7 7 4 7 7 7 7 7 0 9999999 44 1 99 99 7 7 00 22 5555555 22 7 8 0 5 55555 5 0 00 5 00000000 00 5555 3 7 3333333333333333333 333 222 5 5 555 88888888888888888888 0 8 00 0 2 0 5555555 777777777 33 00000000000000000 0 5
consensus : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGG-G-ACAATTACC-T----GACA-TTAG-AC-AAAGAA-GAGTCANCGAACGAAAAC-CGA-T---TGCCAAATTC-GACTGC--AAAAACAATGGA-CT-AAA-TAGAG-NCATCGGATTTC-TGGCTA-----A---C-----TAT-TA-----G---TG-TA------------AATT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-CA-TTGAAGCC-TA-TGCTAATCC----TA----------------C---------TTAAT-------T---------GT---------TGTAT-AAACATTCTGCCGATAT-T--ACCTCTCACCTATGCT-AAA-TTGT----TGGAC-TG-TGTT-ACCAATT-ACCTACA-CA--T-GGCAC-TTGA--AGC-C-A-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAAC-ACC-GTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTC--A--GACC---TGA--TGAAGACC-C-G-CTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATCN-TTCCATAT--AT--ATT-TCTTCAAGT-TAC--CG---C---GATCAACA--CGGCTA-TATGAATAACGTATACTTC--T--ACTGT-GATATTTTGGAAAT-T-ATATTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTA----C--TGTCAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--TA-GTCTAGGAATCACCATATTGGAACTTGGGGTGAAT-----TTT--CAGAACCAGT--------AG------AGCCTTTGGCATACTGGTTCCNGT
Reference ( gi|3 ) : TACTTGTCACAATAT-GCGGGTA-TCCATA--CTACAGG-ACACAATTACC-T----GACA-TTAG-AC-AAAGAACGATTCACCGAACAGAAAT-TGA-T---TGCCAAATTC-GACTGTGCAAAAACAATGGA-CT-AAA-TAGAG-CAATCGGATTT--TGGCTA-----A---C-----TAT-TA-----G---TG-TA------------AATT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-T--TTGAAGCC-TA-GGCTAATCC----TA----------------C---------TTAAT-------T---------GT---------TGTAT-AAACATTCTGGCGATAT-T--ACCTCTCACCTATGCT-AAA-TT-T----TGGAC-TG-TGTT-ACCCATT-ACCTACACCA--T-GGCAC-TTGA--AGC-C-A-CACTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAAC-A-C-GTGCATATGTA-TACT--T--TTATGAACAT-GAT-TTGCTTC--A--A--C---TGA--TGAAGA-C-C-G-CTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-T-GTGT------TATC--TTCCATAT--AT--ATT-TCTTCAAGTAAAC--CG---C---GATCAACA--CGGCTATTATGAATAACGTATACTTC--T--ACTGT-GATATTTTGGAAAT-T-ATACTTATT-A--TTGTT-ATCAACTTGACAT-A-TTTAT-TCC--TGTTAACAAATCT---ATTAT-TTAATTTATCACAATCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--TA-GTCTAGGACTCACCATATTGAAACTTGGGGT-AAT-----TTT--CAGAACCAGT--------AG------TGCATTTGGCATACTGGTTCCCGT
gi|4 : TACTTGTCACAA-AT-GCGGGTA-TCCATAACTTACAG----ACAATTACC-T----GACATTTAG-AC-AAAGAAGAGGTCACCGAACA-AAAT-TGATT---TGCCAAATTCGGACTGC-CAAAAACAA--GA-CTAAAA-TAGAG-ACATCGGATTT--TGCCTA-----A---C-----T-T-TA-----G---TGTTA------------AATT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTGCT--TTGAAAGC-TAGGGCTAATCC----TA----------------C---------TTAA--------T---------GT---------TGTAT-AA--ATTCT-GCGAT-T-T--ACCTCTCACCTATGCT-AAA-TTGT----TGGAC-TGTTGTT-ACCCA-T-ACCTACA-CA--T--GCAC--TGA--AGC-C-A-C-CTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAAC-ACC-GTGCATATGT--TATTACT--TTATGAACATAGAT-TTGCTTC--A--GACC---TGA--TGAAGACC-C-G-CTAGGGTTCGT-AAGCTA-GTCTCAGGAA-AT-AA-TTATA-TTG-ATCAAAAA-GA-TGGTG-------TATCTTTTCCATAT--AT--ATT---CTCAAGTTGACTACG---CCGAGATCAACA--CGGCTA-TATGAATAACGTATACTTCATT--ACTGT-GATATTTTGGAAA--T-ATA-TTATT-AATTTGTTCATCAACTTGACAT-ATTTTATCTCC--TGTTAACAAATCT---ATTATGTTAATTTATCA-ACTCTCAAACTTATA-----TGATTG---TGAGTGAAAGCGTGTTAGCGAGGTG-GT-TAGGACTCAC
gi|5 : tggaaTTGTGACAATAT-GCTGGTA-TCCATA--ATACAGG-G-ACTATTACC-TAGCTGACA-TTAG-AC-AAAGAA-GAGTCAATGAACGAAAAC-TGA-T---TGCCAAATTT-GACTGTG--AAAACAATGGA-CT-AAA-TAGAG-ACATTGGATTTC-TGGCTATTAGTA---------TAT-TA-----GAACTG-TA------------TATTTTGT-----------TC-AT---AT-TTACCA---ATAAATGTTC-ATG-CA-TTGAAGCC-TT-TGCTACTCG----TA----------------C---------TTAAT-------TTTCTTAATTGT---------TGTAT-AAACATTCTGCACAT-T-T--ACCTCTCACCTATGCT-AAA-CTAT----TGGAC-TG-TATT-ACCAAGT-ACCTACAG-A--T-GGCAC-TTGA--AGC-C-A-TACCACAGCCCTTAGATAGCTCTA-ATTG--TT-GTACAAAC-ATC-GTGTATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTT--AG-A--CA--TGA--TGAAGA-C-C-GGCTAGGG-TCAT-AAACTA-GTCTC-TGAA-ATAAA-TTATAGTTG-ATCATAAA-GA-TGGTGT------TATCA-TTCTATAT--GC--ATT-TCTTCAAGT-AAC--CGTGAC---GATCAACA--CGGCTA-TATGAAAAGCGT
gi|9 : ctacaacaaaagtggacattgTTGTGACAAAA--GCGGGTA-TC-ATA--C-ACAGGGACATAATTACC-T----GACA-TTAGAACAAAAGAAgctgacggttcatcttgtataaatgttttttattaaaattttgaaaaatgacaaaatgtaatttgtaatttaattaatacttta
gi|1 : gtcaatagggaacctttccttgtaaaaaaaaaaaaaaaaactcgctgcaaaaactttgcaacgcactcattgccagtgatcgcaatatccaaattcccaatccggaaatgaatttctccaattcaaggcacacttcacatgtgaaactaaaccattgtgtgatttgattcaaatgtagtgtatgttcccatccatgtacattggagaaaacgtgccaaaaaaatcaagaaaccgcatcaatggacaaccgcccagaccatcaacagcaaaatgtgttagtaccagtaggggaacactacaacaagaagtggtcaattgGTGACAATATCGCGGGTAATCCA-A--CTACAGG-G-ACAAT-ATCAT----GTCA-TTAG-AC-AAAGAA-GAGTCAGTGAACAAAAACGCGA-TACTTGCCAAATTT-GAC----AAAAAACAATGGAACT-AAAATAGAGACAATCGGATTTCTTGGCTA-----AACTCAAGTATATGTACAACTG---TA-TA------------ATTT--GCC----------TCACT---ATCTTACCA---ATACATGTACATTG-CA-TTGAAGCCCTA-AGCTAATCC----TA----------------CCTAATTGTCTTAAT-------T---------GT---------TGTAT-AAACACTCTG-CAA-AT-TTAACCTCTCACCTATGCT-AAC-CT-TGCCTTGGACCTG-TGTTTACCAATTTACCT-CACCACAT-GGCAC-TTGA--AGC-C-A-CACCAAAACCCTTAGAGGGCTCTA-ATTG--T----ACAAAC-A-CCGTGCATATGTA-TACT--C--TTGTGAACAT-GAT-TTGCTTT--A--GACC---TGA--TGAAGA-C-CCA-CTAGGG-TC-------------T---GAA-ATAAA-TTAAAGTCA-ATCAAAAA-GA-TAGTGTTACATGTATCA-TTCCATAT--GC--ATT-TCgaagtc
gi|8 : ttcaccctccccacactaaaagtgctataaaaatacagccaagccctaagataacacatactcaactcagatagcaccactcgtagcatgaccaactccaagaacctgaccatatgcattccagcatctctgatataaccaccgattaattaacaaccagttggaataaggctaagaccaaaccactggaactcattactgcagtaacaacacagcagagacatgaaggtgacaggatactccgtctgtattaacctatcacccaggattaaggccctatcaaacgcctatgccaaggaaatacaatatgttatccgaaggacgaaaattaaaggaactattccctaaacctcccgtcattgcttaccagcaaccttctaatatccaaaagttatgctggtacatagtgaacttgcgcctgcatgccaagagggacctttccttgtaaaaaaaaaaaaacaaacctcgcttcaacactttgcccattcattgccagtaatggcaatatccgaattccaattcaggaaatctcagcaatcaaggccacttcacatgtgaaacttaaaaatctgtttgtatttgattaaatgcagtgtatgttccatcatgttacattggagaaacgtgtccaaaaataagaaaccgcatacaatggacaccgccagaccatcaacagcaaaaaatgtttgtaccagtaggtgaacactacaataaagtggacattgttgAGAG-TCATTGGATTTC-TGGCTA-----A---C-----TAT-TG-----G---TG-TATTACAACTGTATAATTT-GC-----------TC-CT---AT-TTACCA---ATACAGGTAC-CTGCT--TTGAAGCC-TA-TGCTAGTCCAACTTAATTGT-----------C---------TTAAT-------T---------GT---------TGTAT-AAACATTCTGCAAAT-T-T--ACCTCTCACCTATGCT-ACA-TTGT----TGGAC-TG-TGTT-ACCAATT-ACCTACACAA--T-G-CAT-TTGA--AGC-C-A-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAAC-A-CCGTGCATATGAT-TACT--T--TTGTGAACAT-GAT-TTGCTTC--A--AACC---TGA--TGAAGA-C-CCG-CCAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAATTG-ATCAAAAATTA-TGGTGG------CATCT-TTCCATA---AT--ATT-TCTTCAAGT-TAC--CA---C---GATCAACA--CGGCTA-TATGAATAACGTTTACTAA--G--A-TGT-GATA
gi|6 : -----A---C-----TAT-TA-----G---T---A------------CATT--GCAATTTTAATTTTC-CTTTTAT-TTACCAGGTATACATGTAC-ATG-CACTTGAAACC-TA-TGCTAATCC----TATTTTCTGGGATGTTGGC---------TTCAT-------T---------AT---------TGTGT-AAATTTTCTG-CAAAAT-T--TCCTCTCATCTGTCCT-AAAATG-T----TGGAC-TG-TGTT-ACCATTT-ACCTACA-TA--G-GGCAC-TTGA--AAC-CAA-TACCACAGCCCATAGATGGTTCTA-ATTG--TT-GTACAGAC-ACC-GTGCATATGTA-TATT--C--TTGTGAAAAT-GAT-TTACTTTAGA--A--T---TGA--CGAATA-C-CAG-CTAGGG-TTGT-AGGCTA-GTCTCTGTAA-ATAAA-TAGCAGTTT-ATCATAAA-GA-TGGTGT------TATCA-TTTTATGTGCAT--ATTGTTTTCAagctacatatgacatccaatatt
gi|7 : ttagttattc-----G---TA-TA------------ACTT--GC-----------TC-CT---AT-TTACCA---ATACATGTA--------------GCC-TA-GGCTAATCC----TA----------------C---------TTAAT-------T---------GTCTTAATTGTTGTAT-AAACATTCTGCAAAT-T-T--ACCTCTCACCTATGCT-AAA-TTGT----TGGAC-TG-TGTT-ACCAAGT-ACCTACA-CA--T-GGCAC-TTGA--AGC-C-A-CACCACAACCTTTAGATGGCTCTA-ATTG--TT-ATACAAGC-ACC-ATGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTC--A--GACC---TGA--TGAAGACC-C-G-CTAGGG-TCAT-AACCTA-ATCTC-GGAA-ATAAA-TTATAGATG-ATCAAAAA-GA-TGGTGT------TATCT-TTCCATAT--AT--ATT-TCTTCAAGT-TAC--CG---C---GATCAACA--CGGCTA-TATGAATAAC----ACTTC--TAAACAATCAATAT----GAAAT-TCATACATACT-A--tactcacgctgatttctcttccaaaccaggaagttaacggtacttcctatgagcactatgagaacagacactacaacactgataataatggtcatgttgtcatccgtagaacttgtaggacacgacgataacgcctctgcaaataaaggtaataaactctatcagtgata
gi|2 : atcacacttctaaactactattagtgtattacaact-----G---TA-TA------------AATT--GCG----------TC-CT---ACGTTACCA---AAATGT-TAC-CT--C--TTGAAGCC-T---GCTAATCC----TA----------------C---------TTAATGTCTTAAT---------GT---------TGTATCAAACATTCTCGTGA-ATCT--ACATCTCACCTATGCTAAAA-TG-T----TGGAG-T--TGTT-ACCCATT-ACATACAACA--T--GCACTTTGAAGAGCAC-A-CACCACCA-CCTTGCATGGCTCTACATTGATCT-ATATAAACAA-C-GTGCATATGTACTACT--TTATTATGAACAT-GAT-TTGCTTC--ACGA--CCAGTGATCTGAAGACC-C-G-CTAGGG-TCGTAAAGGTATGTCTC-GGAAGATAAACTTATCGTTGAACCAAAAA-GAGTGGTGT------TATC--TTTCAT-T--ATTCATT-TC--CAAGT-TAC--CG---CCG-AATCAACA--CGGC-ATTaaaacccatgaagattgtaatatactt
gi|20 : gttttgagtcaaatgcgaggtaatgtttcatatgcactaagtcgcacatgaaagaataaaaactagttggcttaaaatgatagctcagacgacattcaatggacgagtaactcgcaatacctcaaccagaagctgttttgactgctgatagttgacactggaataaagtaggacagcttcttgttgacaattaattatgggcgtaatcaaacagtgaagacctaatattcgtgacaattatagtcaaaaaatgcaacgcaaagaactggatctgaccaaacttagagttctacaaaattaagccatgacgctgataatagattttcatacgattctttagagcactattgtaatttaaacct-----G---TA-TA------------AATT--GC-----------TC-CT---AT-TTAGCA---ATACATGTAC-CTGAT--TTGAAGCC-TA-TGCTAATCC----TA----------------C---------TTAAT-------T---------gagataaacgctttaccattaataattcattgacctacgtgtattttgtcttttagatgcaaatgtgttatcataaatattttgtcaaacttcaa
gi|16 : attacaactT-T----TGAA---G-TGTT-ACCGTTT-ACCTATAT-A--TCAACAC-GTGC--AGT-C-AATACCACAACCCTTGG---GCTCTA-ATTG--TTTGTATAAAC-ATC-GTGCATATGTA-TAAT--C--TTGTGAACTT-GATATT--TTC--A--GACC---TG---TGAAGA-CTC-A-CTAGGG-
gi|11 : aacgg--CG---C---GA-CAACAAGCGTCTAGTTTAAAT----TATACTTC--T--ACTGT-GATAATTTGGAAATAT-AT-TTTGTTAA--TTGGT-ATCAACTTGACA-------------------AATAAATCT---ATTAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--TA-GTCTAGGAATCACCATTTTG-AACTTGGGGTAAATTTAAATTT--CAGAACCAGT--------AG------AGCCTTTGGCATACTTGTTCCC
gi|10 : tATATTCTG---AT-T-CTATTTCAT-ACTTTGTT-AT----TTGCTATCA-TTTA----CAATGTCAACCAATCTTGAATCAT-G-AATAAATCACAAACTC---TTTACTGGTGTT--TTCCTTT-----GGAT-GTGTTGACCA--TA-GTTCAGGAATAAAC-----GAAGCCTGGGTTGAAT-----TTTACTAGAGCCAGTCGATCACCAGAGTTACTGCCCCTGAAATACTGGTTCCAGT
gi|18 : catctctgttgccaagctctctAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-ATGT--ACCA--TAAGTCTAGAA-TCACCATAT--GAACTTGGGGT-AAA-----TTT--CAGAACCAGT--------AG------AGCCTTTGGCATACTGtacaat
gi|23 : TTACT-----T--TTA---T-----AAAG-ATGTTGACCA--TA-GTCTAAGAATCACCATATTG-AACTTG
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TAATTTCAATGCAGTCATATCTTCACTGTACACTGGAGAAACGTTCGCCTAAAAAAAATAAGAACCGCATCAATGGACACCTCCTAACCATTTAAACAGCAAAAAATGTTGTTTGTACCAGTAGGTGAACACTAAACAAAACGACATGTTGTGACATATCTCCAAAATAATTCTCACTCAAAACAAAACA
Unaligned ( gi|13 ): CGTATTCTTTTATACTCACGCTGATTTCTTTTCCAAATCAGGAGGTTTACAGCACTTCCAATGAGCACTATGAGAACAGATACTACAATGCTCAGGATAATGGCGATGTTGTCATCCGTAGAACTTGTATTGCACGATGATAACGAATCTGGAATATCAGGAAATAAACAGTACCAAGCAATG
Unaligned ( gi|14 ): TCTTATTTTACTAGTAGAGTTGATCGATGTTTTAATAGCAAAAACTTGTCACCCATTAAGGAATACTTTCATGTTATAATTTTTTGCAATTTATAATTATCATTAATGATTTATTCATAAAGGCAATTTCTTAATGTGAATCCTATGTCTTTATTCTTTTAAAAAAATATT
Unaligned ( gi|15 ): AAATCAGGAAGTTTACGACACTCCCAATGAGCACTATGAGAACAGACACTACAACACTGATAATAATGGCGATGTTGTCATCCGTAGAACATGTAGGGCACGATGATATCGCCTCTGTAAATAAAGGAACGAATGCAATCAATGAT
Unaligned ( gi|17 ): TATCTCTCTTGTTGCAAATCGTTTCTTACACTGGTATCTTCTCCACAACAGGATGTTTATGATACTTCCGATAAGAACAATGATAAAAGACGCTACAATGCTGATGATCATCGCCATGGTGTTGTCA
Unaligned ( gi|19 ): TTTACGGGTCATAATTATGACGTTTACCGGTAATTCAAGACATGCATAATTGTAACGTTTGCCGGTAATTCAAGACATACATTA
Unaligned ( gi|21 ): CCAGACCATCAACAGCAAAAATGTGTTAGTACCAGTAGGGGAACACTACAACAGAAGTGGTCATTGAGTG
Unaligned ( gi|22 ): GACACCGCCAGACCATCAACAGCAAAAATGTATTTGTACCAGTAGGTGAACACTACAACATGTGACAATA
Unaligned ( gi|24 ): ATCAGAATTGATTGATAGTGTTATCATTCTATATGCATTTCTCCAA
Unaligned ( gi|25 ): CANNNNNNNNNNNNNNNNNNNNNNNNNCACTGGTTCCCGTTAC
Alignments
lowQualScore : 11 11 1111 1 11 11111 1 222222 1 2 333333333333333 11111 444444444444 11 33333333333 11 66666666666666666666666666 22222222222222222 22222 1 111111 22222222 111111 1 11 11 11 2222 1 555555555555555 111 111 11111111 111111111 1111 1 222222 11 44444444444444444
lowQualScore : 6 88 8 0 11 0 8 11 0 8 7777 8 8 8 8 8 8 1 0 22 88888 0 333333 3 0 0 1 6 6 6 6 333333333333333 5 11111 777 0 4 555555555555 4 00 00000000000 4 777 8 777 44 77 4 4 4 9999 66666666666666666666666666 88888888888888888 5 88888 5 5 66 4 4 4 0 4 4 8 4 44 4 66 4 8 4 66 4 1 4 88888 4 4 4 66 66 4 0 5 5 0 5 4 4 4 4 222222 99 66 4 55555555 111111 77 1 1 5 2 1 11 2 2 33 00 0 0000 0 2 777777777777777 4 777 8 0 1 444 66666666 999999999 6 99 6 1 1 0 7777 0 888888 33 33333333333333333 1
lowQualScore : . .. . . .. . . .. . . .... . . . . . . . . .. ..... . ...... . . . . . . . . ............... . ..... ... . . ............ . .. ........... . ... . ... .. .. . . . .... .......................... ................. . ..... . . .. . . . . . . . . .. . .. . . . .. . . . ..... . . . .. .. . . . . . . . . . . ...... .. .. . ........ ...... .. . . . . . .. . . .. .. . .... . . ............... . ... . . . ... ........ ......... . .. . . . . .... . ...... .. ................. .
lowQualScore : 0 88 0 8 00 8 0 00 8 0 0000 0 0 0 0 0 0 0 5 00 55555 0 555555 2 0 0 0 7 7 7 7 777777777777777 7 11111 888 9 4 666666666666 4 66 00000000000 4 888 9 888 66 77 4 6 4 4444 11111111111111111111111111 77777777777777777 0 00000 0 0 11 4 4 4 7 4 4 9 4 66 4 11 4 9 4 11 4 9 4 22222 4 4 4 11 11 4 2 0 0 0 0 4 4 4 4 888888 88 11 4 55555555 444444 99 4 7 7 5 0 00 5 5 22 22 8 8888 0 5 000000000000000 2 555 0 8 4 000 88888888 333333333 7 22 7 0 0 8 0000 5 222222 88 55555555555555555 0
consensus : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-AC--TGC-GAAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTGC--TTGAAGCC-TANG-CTAATCC----TA----------------C---------TTAAT-------T---------GTTGTAT-AAACATTCTGCAGAT-T-TACCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-A-CAT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATAT--ACATT-TCTTCAAGT-T------ACCG---C--GATCAACA--CGGCTA-TATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAAT-TATATTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATCC-C--TGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
Reference ( family-1357 ) : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-CGAT---T-GCCAAATTCG-AC--TGC-AAAAACAATGGA-CTAAA-TAGAGNCA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTGCA-TTGAAGCC-TATG-CTAATCC----TA----------------C---------TTAAT-------T---------GTTGTAT-AAACATTCTGCCGATAT-TACCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-A-CAT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATAT--ATATT-TCTTCAAGT-T------ACCG---C--GATCAACA--CGGCTA-TATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAAT-TATATTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTA----C--TGTCAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTGAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCNGT
gi|1 : GTGACAATATCGCGGGTAATCCA-A--CTACAGGG-ACA--AT-ATCAT----GTCATT-AG-AC-AAAGAA-G-AG-TCAGTGAACAAAAACGCGATACTT-GCCAAATTTG-AC----A-AAAAACAATGGAACTAAAATAGAGACAATCGGATTTCTTGG-CTA-----AACTCAAGTATATGTACAACTG---TAT-A------------AT-TT--GCC----------TCACT---ATCTTACCA---ATACATGTACATTGCA-TTGAAGCCCTAAG-CTAATCC----TA----------------CCTAATTGTCTTAAT-------T---------GTTGTAT-AAACACTCTGCAAATTT-AACCTCTCACCTATGCTAACCTTGCCTTGGACCTGT-GTTTACCAATTTACCTCACCA-CAT-GGCAC-TTGA--AGC-CA-CACCAAAACCCTTAGAGGGCTCTA-ATTG--T----ACAAACACCGTGCATATGTA-TACT--C--TTGTGAACAT-GAT-TTGCTTTA-GACC--TGA--TGAAGACCCACTAGGG-TC-T---------------GAA-ATAAA-TTAAAGTCA-ATCAAAAA-GA-TAGTGTTACATGTATC-ATTCCATAT--GCATT-TC
gi|10 : ttcaccctccccacactaaaagtgctataaaaatacagccaagccctaagataacacatactcaactcagatagcaccactcgtagcatgaccaactccaagaacctgaccatatgcattccagcatctctgatataaccaccgattaattaacaaccagttggaataaggctaagaccaaaccactggaactcattactgcagtaacaacacagcagagacatgaaggtgacaggatactccgtctgtattaacctatcacccaggattaaggccctatcaaacgcctatgccaaggaaatacaatatgttatccgaaggacgaaaattaaaggaactattccctaaacctcccgtcattgcttaccagcaaccttctaatatccaaaagttatgctggtacatagtgaacttgcgcctgcatgccaagagggacctttccttgtaaaaaaaaaaaaacaaacctcgcttcaacactttgcccattcattgccagtaatggcaatatccgaattccaattcaggaaatctcagcaatcaaggccacttcacatgtgaaacttaaaaatctgtttgtatttgattaaatgcagtgtatgttccatcatgttacattggagaaacgtgtccaaaaataagaaaccgcatacaatggacaccgccagaccatcaacagcaaaaaatgtttgtaccagtaggtgaacactacaataaagtggacattgttgATATTCTG---AT-TCTATTTCAT-ACTTTGTT-AT----TTGCTATCA-TTTA----CAATGTCAACCAATCTTGAATCAT-G-AATAAATCACAAACTC---TTTACTGGTGTT--TTCCTTT-----GGAT-GTGTTGACCA--T-AGTTCAGGAATAAAC-----GAAGCCTGGGTTGAAT-----TTTACTAGAGCCAGTCGATCACCAGAGTTACTGCCCCTGAAATACTGGTTCCAGT
gi|11 : catctctgttgccaagctctctCG---C--GA-CAACAAGCGTCTAGTTTAA-AT----TATACTTC--TACTGTGATAATTTGGAAATATAT-TTTGTT-A-ATTGGT-ATCAACTTGACA-------------------AATAAATCT---ATTAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCAT-TTTGAACTTGGGGTAAATTTAAATTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTTGTTCCCtacaat
gi|16 : t--TTGAA---GT-GTT-ACCGTTT-ACCT-AT-A-TATCAACAC-GTGC--AGT-CAATACCACAACCCTTGG---GCTCTA-ATTG--TTTGTATAAACATCGTGCATATGTA-TAAT--C--TTGTGAACTT-GATATT--TTCA-GACC--TG---TGAAGACTCACTAGGG-
gi|18 : aacggtAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-ATGT--ACCA--TAAGTCTA-GAATCACCATAT--GAACTTGGGGTAAA------TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTG
gi|2 : -----G---TAT-A------------AA-TT--GCG----------TC-CT---ACGTTACCA---AAATGT-TAC-CT-C--TTGAAGCC-T--G-CTAATCC----TA----------------C---------TTAATGTCTTAAT---------GTTGTATCAAACATTCTCGTGA-ATCTACATCTCACCTATGCTAAA-ATG--TTGGAG-T-T-GTT-ACCCATT-ACAT-ACAA-CAT--GCACTTTGAAGAGCACA-CACCACCA-CCTTGCATGGCTCTACATTGATCT-ATATAAACAACGTGCATATGTACTACT--TTATTATGAACAT-GAT-TTGCTTCACGACCAGTGATCTGAAGACCCGCTAGGG-TCGTAAAGGTATGTCTC-GGAAGATAAACTTATCGTTGAACCAAAAA-GAGTGGTGT------TATC-TTTCATTAT--TCATT-TC--CAAGT-T------ACCG---CCGAATCAACA--CGGC-A-T-TGAGATAA
gi|20 : gttttgagtcaaatgcgaggtaatgtttcatatgcactaagtcgcacatgaaagaataaaaactagttggcttaaaatgatagctcagacgacattcaatggacgagtaactcgcaatacctcaaccagaagctgttttgactgctgatagttgacactggaataaagtaggacagcttcttgttgacaattaattatgggcgtaatcaaacagtgaagacctaatattcgtgacaattatagtcaaaaaatgcaacgcaaagaactggatctgaccaaacttagagttctacaaaattaagccatgacgctgataatagattttcatacgattctttagagcactattgtaatttaaacct-----G---TAT-A------------AA-TT--GC-----------TC-CT---AT-TTAGCA---ATACATGTAC-CTGAT-TTGAAGCC-TATG-CTAATCC----TA----------------C---------TTAAT-------T---------acgctttaccattaataattcattgacctacgtgtattttgtcttttagatgcaaatgtgttatcataaatattttgtcaaacttcaa
gi|23 : attacaactTTACT-----T--TTA---T-----AAAG-ATGTTGACCA--T-AGTCTAAGAATCACCATATT-GAACTTG
gi|24 : A-TCAGAATTG-ATT------GA-TAGTGT------TATC-ATTCTATAT--GCATT-TCTCCAA
gi|3 : TACTTGTCACAATAT-GCGGGTA-TCCATA--CTACAGGACACA--ATTACC-T----GACATT-AG-AC-AAAGAACG-AT-TCACCGAACAGAAAT-TGAT---T-GCCAAATTCG-ACTGTGC-AAAAACAATGGA-CTAAA-TAGAGCAA-TCGGATTT-T-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTGT--TTGAAGCC-TAGG-CTAATCC----TA----------------C---------TTAAT-------T---------GTTGTAT-AAACATTCTGGCGATAT-TACCTCTCACCTATGCTAAA-TT---TTGGAC-TGT-GTT-ACCCATT-ACCT-AC-ACCAT-GGCAC-TTGA--AGC-CA-CACTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACA-CGTGCATATGTA-TACT--T--TTATGAACAT-GAT-TTGCTTCA-A--C--TGA--TGAAGA-CCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-T-GTGT------TATC--TTCCATAT--ATATT-TCTTCAAGTAA------ACCG---C--GATCAACA--CGGCTATTATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAAT-TATACTTATT-A--TTGTT-ATCAACTTGACAT-A-TTTATTC-C--TGTTAACAAATCT---ATTAT-TTAATTTATCACAATCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGACTCACCATATTGAAACTTGGGGT-AAT-----TTT--CAGAACCAGT--------AGT------GCATTTGGCATACTGGTTCCCGT
gi|4 : TACTTGTCACAA-AT-GCGGGTA-TCCATAACTTACAG---ACA--ATTACC-T----GACATTTAG-AC-AAAGAA-G-AGGTCACCGAAC-AAAAT-TGAT---TTGCCAAATTCGGAC--TGCCAAAAACAA--GA-CTAAAATAGAGACA-TCGGATTT-T-GC-CTA-----A---C-----T-T-TA-----G---TGTTA------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTGCT-TTGAAAGC-TAGGGCTAATCC----TA----------------C---------TTAAT-----------------GTTGTAT-AAA--TTCTGC-GAT-T-TACCTCTCACCTATGCTAAA-TTG--TTGGAC-TGTTGTT-ACCCAT--ACCT-AC-A-CAT-G-CAC-T-GA--AGC-CA-C-CTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACACCGTGCATATGT--TATTACT--TTATGAACATAGAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGGTTCGT-AAGCTA-GTCTCAGGAA-AT-AA-TTATA-TTG-ATCAAAAA-GA-TGGTG-------TATCTTTTCCATAT--ATATT---CTCAAGT-TGACTACGCCG---A--GATCAACA--CGGCTA-TATGA-ATAACGTATACTTCATTACTGTGATATTTTGGAAA--TATA-TTATTAA-TTTGTTCATCAACTTGACAT-ATTTTATCTCC--TGTTAACAAATCT---ATTATGTTAATTTATCA-ACTCTCAAACTTATA-----TGATTG---TGAGTGAAAGCGTGTTAGCGAGGT-GGT-TAGGACTCAC
gi|5 : tggaaTTGTGACAATAT-GCTGGTA-TCCATA--ATACAGGG-ACT--ATTACC-TAGCTGACATT-AG-AC-AAAGAA-G-AG-TCAATGAACGAAAAC-TGAT---T-GCCAAATTTG-AC--TGT-GAAAACAATGGA-CTAAA-TAGAGACA-TTGGATTTCT-GG-CTATTAGTA---------TAT-TA-----GAACTGT-A------------TA-TTTTGT-----------TC-AT---AT-TTACCA---ATAAATGTTC-ATGCA-TTGAAGCC-TTTG-CTACTCG----TA----------------C---------TTAAT-------TTTCTTAATTGTTGTAT-AAACATTCTGCACAT-T-TACCTCTCACCTATGCTAAA-CTA--TTGGAC-TGT-ATT-ACCAAGT-ACCT-AC-A-GAT-GGCAC-TTGA--AGC-CA-TACCACAGCCCTTAGATAGCTCTA-ATTG--TT-GTACAAACATCGTGTATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTTA-GACA--TGA--TGAAGACCGGCTAGGG-TCAT-AAACTA-GTCTC-TGAA-ATAAA-TTATAGTTG-ATCATAAA-GA-TGGTGT------TATC-ATTCTATAT--GCATT-TCTTCAAGT-A------ACCGTGAC--GATCAACA--CGGCTA-TATGA-AAAGCGT
gi|6 : ctacaacaaaagtggacattg-----A---C-----TAT-TA-----G---T---A------------CA-TT--GCAATTTTAATTTTC-CTTTTAT-TTACCAGGTATACATGTAC-ATGCACTTGAAACC-TATG-CTAATCC----TATTTTCTGGGATGTTGGC---------TTCAT-------T---------ATTGTGT-AAATTTTCTGCAAA-AT-TTCCTCTCATCTGTCCTAAA-ATG--TTGGAC-TGT-GTT-ACCATTT-ACCT-AC-A-TAG-GGCAC-TTGA--AAC-CAATACCACAGCCCATAGATGGTTCTA-ATTG--TT-GTACAGACACCGTGCATATGTA-TATT--C--TTGTGAAAAT-GAT-TTACTTTA-GAAT--TGA--CGAATACCAGCTAGGG-TTGT-AGGCTA-GTCTCTGTAA-ATAAA-TAGCAGTTT-ATCATAAA-GA-TGGTGT------TATC-ATTTTATGTGCATATTGTTTTCAgctgacggttcatcttgtataaatgttttttattaaaattttgaaaaatgacaaaatgtaatttgtaatttaattaatacttta
gi|7 : ttagttattcA-TCACACTTCT-AAACTA---------C-----TAT-TA-----G---TGT-ATTACAACTGTATAACTT--GC-----------TC-CT---AT-TTACCA---ATACATGT-------------AGCC-TAGG-CTAATCC----TACTTAATTGT-------C---------TTAAT-------T---------GTTGTAT-AAACATTCTGCAAAT-T-TACCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAAGT-ACCT-AC-A-CAT-GGCAC-TTGA--AGC-CA-CACCACAACCTTTAGATGGCTCTA-ATTG--TT-ATACAAGCACCATGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCAT-AACCTA-ATCTC-GGAA-ATAAA-TTATAGATG-ATCAAAAA-GA-TGGTGT------TATC-TTTCCATAT--ATATT-TCTTCAAGT-T------ACCG---C--GATCAACA--CGGCTA-TATGA-ATAAC----ACTTC--TAtactcacgctgatttctcttccaaaccaggaagttaacggtacttcctatgagcactatgagaacagacactacaacactgataataatggtcatgttgtcatccgtagaacttgtaggacacgacgataacgcctctgcaaataaaggtaataaactctatcagtgata
gi|8 : AGAGTCA-TTGGATTTCT-GG-CTA-----A---C-----TAT-TG-----G---TGT-ATTACAACTGTATAA-TTT-GC-----------TC-CT---AT-TTACCA---ATACAGGTAC-CTGCT-TTGAAGCC-TATG-CTAGTCCAACTTAATTGT-----------C---------TTAAT-------T---------GTTGTAT-AAACATTCTGCAAAT-T-TACCTCTCACCTATGCTACA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-A-CAA-TGCAT-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGAT-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-AACC--TGA--TGAAGACCCGCCAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAATTG-ATCAAAAATTA-TGGTGG------CATC-TTTCCATA---ATATT-TCTTCAAGT-T------ACCA---C--GATCAACA--CGGCTA-TATGA-ATAACGTTTACTAA--GA-TGTGATAaacaatcaatatgaaattcatacatactaaaaacccatgaagattgtaatatactt
gi|9 : TTGTGACAAAA--GCGGGTA-TC-ATA--C-ACAGGG-ACATAATTACC-T----GACATT-AGAACAAAAGAA-GAAG-TCagctacatatgacatccaatatt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAATTTCAATGCAGTCATATCTTCACTGTACACTGGAGAAACGTTCGCCTAAAAAAAATAAGAACCGCATCAATGGACACCTCCTAACCATTTAAACAGCAAAAAATGTTGTTTGTACCAGTAGGTGAACACTAAACAAAACGACATGTTGTGACATATCTCCAAAATAATTCTCACTCAAAACAAAACA
Unaligned ( gi|13 ): CGTATTCTTTTATACTCACGCTGATTTCTTTTCCAAATCAGGAGGTTTACAGCACTTCCAATGAGCACTATGAGAACAGATACTACAATGCTCAGGATAATGGCGATGTTGTCATCCGTAGAACTTGTATTGCACGATGATAACGAATCTGGAATATCAGGAAATAAACAGTACCAAGCAATG
Unaligned ( gi|14 ): TCTTATTTTACTAGTAGAGTTGATCGATGTTTTAATAGCAAAAACTTGTCACCCATTAAGGAATACTTTCATGTTATAATTTTTTGCAATTTATAATTATCATTAATGATTTATTCATAAAGGCAATTTCTTAATGTGAATCCTATGTCTTTATTCTTTTAAAAAAATATT
Unaligned ( gi|15 ): AAATCAGGAAGTTTACGACACTCCCAATGAGCACTATGAGAACAGACACTACAACACTGATAATAATGGCGATGTTGTCATCCGTAGAACATGTAGGGCACGATGATATCGCCTCTGTAAATAAAGGAACGAATGCAATCAATGAT
Unaligned ( gi|17 ): TATCTCTCTTGTTGCAAATCGTTTCTTACACTGGTATCTTCTCCACAACAGGATGTTTATGATACTTCCGATAAGAACAATGATAAAAGACGCTACAATGCTGATGATCATCGCCATGGTGTTGTCA
Unaligned ( gi|19 ): TTTACGGGTCATAATTATGACGTTTACCGGTAATTCAAGACATGCATAATTGTAACGTTTGCCGGTAATTCAAGACATACATTA
Unaligned ( gi|21 ): CCAGACCATCAACAGCAAAAATGTGTTAGTACCAGTAGGGGAACACTACAACAGAAGTGGTCATTGAGTG
Unaligned ( gi|22 ): GACACCGCCAGACCATCAACAGCAAAAATGTATTTGTACCAGTAGGTGAACACTACAACATGTGACAATA
Unaligned ( gi|25 ): CANNNNNNNNNNNNNNNNNNNNNNNNNCACTGGTTCCCGTTAC
Alignments
lowQualScore : 11 11 1111 1 1 11111 1 22222 1 1 333333333333333 11111 444444444444 11 33333333333 1111 55555555555555555555555555555555555555 1111111 1 111111 11111111 111111 11 1 11 111 1 3333333333333 111 111 11111111 111111111 1111 222222 11 44444444444444444
lowQualScore : 6 88 8 0 11 0 8 11 0 8 7777 8 8 8 8 8 8 1 0 0 88888 0 3 66666 3 0 5 1 6 6 6 6 333333333333333 5 11111 777 0 4 555555555555 4 00 00000000000 4 777 8 777 44 5555 8 4 2 4 9999 99999999999999999999999999999999999999 4444444 5 5 55 5 5 5 66 4 4 4 0 4 4 8 4 44 4 66 4 8 4 66 4 4 88888 4 4 4 66 66 1 4 0 5 5 0 5 4 4 4 4 222222 99 0 0 99999999 111111 77 5 77 5 2 1 11 2 2 5 77 0 111 3 0 2 2222222222222 0 777 8 0 1 444 66666666 999999999 6 99 6 1 1 0 7777 7 888888 33 33333333333333333
lowQualScore : . .. . . .. . . .. . . .... . . . . . . . . . ..... . . ..... . . . . . . . . ............... . ..... ... . . ............ . .. ........... . ... . ... .. .... . . . . .... ...................................... ....... . . .. . . . .. . . . . . . . . .. . .. . . . .. . . ..... . . . .. .. . . . . . . . . . . . ...... .. . . ........ ...... .. . .. . . . .. . . . .. . ... . . . ............. . ... . . . ... ........ ......... . .. . . . . .... . ...... .. .................
lowQualScore : 0 88 0 8 00 8 0 00 8 0 0000 0 0 0 0 0 0 0 5 0 55555 0 2 00000 2 0 5 0 7 7 7 7 777777777777777 7 11111 888 9 4 666666666666 4 66 00000000000 4 888 9 888 66 8888 9 4 6 4 4444 66666666666666666666666666666666666666 4444444 0 0 11 0 0 0 11 4 4 4 7 4 4 9 4 66 4 11 4 9 4 11 4 4 22222 4 4 4 11 11 1 4 2 0 0 0 0 4 4 4 4 888888 88 6 1 33333333 444444 99 7 44 7 5 0 00 5 5 5 00 8 000 2 0 5 8888888888888 8 555 0 8 4 000 88888888 333333333 7 22 7 0 0 8 0000 0 222222 88 55555555555555555
consensus : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GCAAAT-TTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
Reference ( family-1357 ) : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GCAGAT-TTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATACATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
gi|1 : GTGACAATATCGCGGGTAATCCA-A--CTACAGGG-ACA--AT-ATCAT----GTCATT-AG-AC-AAAGAA-G-AG-TCAGTGAACAAAAACGCGATACTT-GCCAAATTTG-AC--A-A--AAAACAATGGAACTAAAATAGAGACAATCGGATTTCTTGG-CTA-----AACTCAAGTATATGTACAACTG---TAT-A------------AT-TT--GCC----------TCACT---ATCTTACCA---ATACATGTACATTG-CA-TT-GAAGCCCTAAG-CTAATCC----TA----------------CCTAATTGTCTTA---------AT-------TGTTGTAT-AAACACTCT-GCAAAT-TTAACCTCTCACCTATGCTAACCTTGCCTTGGACCTGT-GTTTACCAATTTACCTCACCAC-AT-GGCAC-TTGA--AGC-CA-CACCAAAACCCTTAGAGGGCTCTA-ATTG--T----ACAAACACCGTGCATATGTA-TACT--C--TTGTGAACAT-GAT-TTGCTTTA-GACC--TGA--TGAAGACCCACTAGGG-TC-T---------------GAA-ATAAA-TTAAAGTCA-ATCAAAAA-GA-TAGTGTTACATGTATC-ATTCCATATGCATTTC
gi|10 : ttcaccctccccacactaaaagtgctataaaaatacagccaagccctaagataacacatactcaactcagatagcaccactcgtagcatgaccaactccaagaacctgaccatatgcattccagcatctctgatataaccaccgattaattaacaaccagttggaataaggctaagaccaaaccactggaactcattactgcagtaacaacacagcagagacatgaaggtgacaggatactccgtctgtattaacctatcacccaggattaaggccctatcaaacgcctatgccaaggaaatacaatatgttatccgaaggacgaaaattaaaggaactattccctaaacctcccgtcattgcttaccagcaaccttctaatatccaaaagttatgctggtacatagtgaacttgcgcctgcatgccaagagggacctttccttgtaaaaaaaaaaaaacaaacctcgcttcaacactttgcccattcattgccagtaatggcaatatccgaattccaattcaggaaatctcagcaatcaaggccacttcacatgtgaaacttaaaaatctgtttgtatttgattaaatgcagtgtatgttccatcatgttacattggagaaacgtgtccaaaaataagaaaccgcatacaatggacaccgccagaccatcaacagcaaaaaatgtttgtaccagtaggtgaacactacaataaagtggacattgttgATATTCTG---ATTCTA-TTTCAT-ACTTTGTT-AT----TTGCTATCA-TTTA-C-AATGTCAACCAATCTTGAATCAT-G-AATAAATCACAAACTC---TTTACTGGTGTT--TTCCTTT-----GGAT-GTGTTGACCA--T-AGTTCAGGAATAAAC-----GAAGCCTGGGTTGAAT-----TTTACTAGAGCCAGTCGATCACCAGAGTTACTGCCCCTGAAATACTGGTTCCAGT
gi|11 : catctctgttgccaagctctctCG---C--GA-CAACAAGCGTCTAGT-TTAA-AT----TATACTTC--TACTGTGATAATTTGGAAA-TATATTTTGTT-A-ATTGGT-ATCAACTTGACA-----------------AATAAATCT---ATTAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCAT-TTTGAACTTGGGGTAAATTTAAATTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTTGTTCCCGtacaat
gi|16 : t--TTGAA---GT-GTT-ACCGTTT-ACCT-AT-AT-ATCAACAC-GTGC--AGT-CAATACCACAACCCTTGG---GCTCTA-ATTG--TTTGTATAAACATCGTGCATATGTA-TAAT--C--TTGTGAACTT-GATATT--TTCA-GACC--TG---TGAAGACTCACTAGGG-
gi|18 : aacggtAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-ATGT--ACCA--TAAGTCTA-GAATCACCATAT--GAACTTGGGGTAAA------TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTG
gi|2 : -----G---TAT-A------------AA-TT--GCG----------TC-CT---ACGTTACCA---AAATGT-TAC-CT--C--TT-GAAGCC-T--G-CTAATCC----TA----------------C---------TTA---------ATGTCTTAATGTTGTATCAAACATTCTCGTGAAT-CTA-CATCTCACCTATGCTAAA-ATG--TTGGAG-T-T-GTT-ACCCATT-ACAT-ACAAC-AT--GCACTTTGAAGAGCACA-CACCACCA-CCTTGCATGGCTCTACATTGATCT-ATATAAACAACGTGCATATGTACTACT--TTATTATGAACAT-GAT-TTGCTTCACGACCAGTGATCTGAAGACCCGCTAGGG-TCGTAAAGGTATGTCTC-GGAAGATAAACTTATCGTTGAACCAAAAA-GAGTGGTGT------TATC-TTTCATTATTCATTTC--CAAGTT------A-CCG---CCGAATCAACA--CGGC-A-T--TGAGATAA
gi|20 : gttttgagtcaaatgcgaggtaatgtttcatatgcactaagtcgcacatgaaagaataaaaactagttggcttaaaatgatagctcagacgacattcaatggacgagtaactcgcaatacctcaaccagaagctgttttgactgctgatagttgacactggaataaagtaggacagcttcttgttgacaattaattatgggcgtaatcaaacagtgaagacctaatattcgtgacaattatagtcaaaaaatgcaacgcaaagaactggatctgaccaaacttagagttctacaaaattaagccatgacgctgataatagattttcatacgattctttagagcactattgtaatttaaacct-----G---TAT-A------------AA-TT--GC-----------TC-CT---AT-TTAGCA---ATACATGTAC-CTGAT--TT-GAAGCC-TATG-CTAATCC----TA----------------C---------TTA---------AT-------Tacgctttaccattaataattcattgacctacgtgtattttgtcttttagatgcaaatgtgttatcataaatattttgtcaaacttcaa
gi|23 : attacaactTTACT-----T--TTA---T-----AAAG-ATGTTGACCA--T-AGTCTAAGAATCACCATATT-GAACTTG
gi|24 : A-TCAGAATTG-ATT------GA-TAGTGT------TATC-ATTCTATATGCATTTCTCCAA
gi|3 : TACTTGTCACAATAT-GCGGGTA-TCCATA--CTACAGGACACA--ATTACC-T----GACATT-AG-AC-AAAGAACG-AT-TCACCGAACAGAAAT-TGAT---T-GCCAAATTCG-ACTGT-GCAAAAACAATGGA-CTAAA-TAGAGCAA-TCGGATTT-T-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-T--TT-GAAGCC-TAGG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GGCGATATTA-CCTCTCACCTATGCTAAA-TT---TTGGAC-TGT-GTT-ACCCATT-ACCT-AC-ACCAT-GGCAC-TTGA--AGC-CA-CACTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACAC-GTGCATATGTA-TACT--T--TTATGAACAT-GAT-TTGCTTCA-A--C--TGA--TGAAGACC-GCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TG-TGT------TATC--TTCCATATATATTTCTTCAAGTA------AACCG---C--GATCAACA--CGGCTA-TTATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-CTTATT-A-TT-GTT-ATCAACTTGACAT-A-TTTATT-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAATCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGACTCACCATATTGAAACTTGGGGT-AAT-----TTT--CAGAACCAGT--------AGT------GCATTTGGCATACTGGTTCCCGT
gi|4 : TACTTGTCACAA-AT-GCGGGTA-TCCATAACTTACAG---ACA--ATTACC-T----GACATTTAG-AC-AAAGAA-G-AGGTCACCGAAC-AAAAT-TGAT---TTGCCAAATTCGGACTGCCA--AAAACAA--GA-CTAAAATAGAGACA-TCGGATTT-T-GC-CTA-----A---C-----T-T-TA-----G---TGTTA------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TTTGAAAGC-TAGGGCTAATCC----TA----------------C---------TTA---------AT--------GTTGTAT-AAA--TTCT-GC-GAT-TTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGTTGTT-ACCCAT--ACCT-AC-AC-AT-G-CAC-T-GA--AGC-CA-C-CTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACACCGTGCATATGT--TATTACT--TTATGAACATAGAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGGTTCGT-AAGCTA-GTCTCAGGAA-AT-AA-TTATA-TTG-ATCAAAAA-GA-TGGTG-------TATCTTTTCCATATATATT--CTCAAGTTGACTACG-CCG---A--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTCATTACTGTGATATTTTGGAAA-TATA--TTATTAA-TTTGTTCATCAACTTGACAT-ATTTTATCTCCTGTTAACAAATCT---ATTATGTTAATTTATCA-ACTCTCAAACTTATA-----TGATTG---TGAGTGAAAGCGTGTTAGCGAGGT-GGT-TAGGACTCAC
gi|5 : tggaaTTGTGACAATAT-GCTGGTA-TCCATA--ATACAGGG-ACT--ATTACC-TAGCTGACATT-AG-AC-AAAGAA-G-AG-TCAATGAACGAAAAC-TGAT---T-GCCAAATTTG-ACTGT-G--AAAACAATGGA-CTAAA-TAGAGACA-TTGGATTTCT-GG-CTATTAGTA---------TAT-TA-----GAACTGT-A------------TA-TTTTGT-----------TC-AT---AT-TTACCA---ATAAATGTTC-ATG-CA-TT-GAAGCC-TTTG-CTACTCG----TA----------------C---------TTAATTTTCTTAAT-------TGTTGTAT-AAACATTCT-GCACAT-TTA-CCTCTCACCTATGCTAAA-CTA--TTGGAC-TGT-ATT-ACCAAGT-ACCT-AC-AG-AT-GGCAC-TTGA--AGC-CA-TACCACAGCCCTTAGATAGCTCTA-ATTG--TT-GTACAAACATCGTGTATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTTA-GACA--TGA--TGAAGACCGGCTAGGG-TCAT-AAACTA-GTCTC-TGAA-ATAAA-TTATAGTTG-ATCATAAA-GA-TGGTGT------TATC-ATTCTATATGCATTTCTTCAAGTA------A-CCGTGAC--GATCAACA--CGGCTA-T-ATGA-AAAGCGT
gi|6 : ctacaacaaaagtggacattg-----A---C-----TAT-TA-----G---T---A------------CA-TT--GCAATTTTAATTTTC-CTTTTAT-TTACCAGGTATACATGTAC-ATG-CACTT-GAAACC-TATG-CTAATCC----TATTTTCTGGGATGTTGGC---------TTC---------AT-------TATTGTGT-AAATTTTCT-GCAAAA-TTT-CCTCTCATCTGTCCTAAA-ATG--TTGGAC-TGT-GTT-ACCATTT-ACCT-AC-AT-AG-GGCAC-TTGA--AAC-CAATACCACAGCCCATAGATGGTTCTA-ATTG--TT-GTACAGACACCGTGCATATGTA-TATT--C--TTGTGAAAAT-GAT-TTACTTTA-GAAT--TGA--CGAATACCAGCTAGGG-TTGT-AGGCTA-GTCTCTGTAA-ATAAA-TAGCAGTTT-ATCATAAA-GA-TGGTGT------TATC-ATTTTATGTGCATgctgacggttcatcttgtataaatgttttttattaaaattttgaaaaatgacaaaatgtaatttgtaatttaattaatacttta
gi|7 : ttagttattcA-TCACACTTCT-AAACTA---------C-----TAT-TA-----G---TGT-ATTACAACTGTATAACTT--GC-----------TC-CT---AT-TTACCA---ATACATGTA---------------GCC-TAGG-CTAATCC----TA----------------C---------TTAATTGTCTTAAT-------TGTTGTAT-AAACATTCT-GCAAAT-TTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAAGT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCTTTAGATGGCTCTA-ATTG--TT-ATACAAGCACCATGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCAT-AACCTA-ATCTC-GGAA-ATAAA-TTATAGATG-ATCAAAAA-GA-TGGTGT------TATC-TTTCCATATATATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAAC----ACTTC--TAattgttttcatactcacgctgatttctcttccaaaccaggaagttaacggtacttcctatgagcactatgagaacagacactacaacactgataataatggtcatgttgtcatccgtagaacttgtaggacacgacgataacgcctctgcaaataaaggtaataaactctatcagtgata
gi|8 : AGAGTCA-TTGGATTTCT-GG-CTA-----A---C-----TAT-TG-----G---TGT-ATTACAACTGTATAA-TTT-GC-----------TC-CT---AT-TTACCA---ATACAGGTAC-CTG-C--TTTGAAGCC-TATG-CTAGTCCAACTTAATTGT-----------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GCAAAT-TTA-CCTCTCACCTATGCTACA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AA-TGCAT-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGAT-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-AACC--TGA--TGAAGACCCGCCAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAATTG-ATCAAAAATTA-TGGTGG------CATC-TTTCCATA-ATATTTCTTCAAGTT------A-CCA---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTTTACTAA--GA-TGTGATAaacaatcaatatgaaattcatacatactaaaaacccatgaagattgtaatatactt
gi|9 : TTGTGACAAAA--GCGGGTA-TC-ATA--C-ACAGGG-ACATAATTACC-T----GACATT-AGAACAAAAGAA-GAAG-TCagctacatatgacatccaatatt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAATTTCAATGCAGTCATATCTTCACTGTACACTGGAGAAACGTTCGCCTAAAAAAAATAAGAACCGCATCAATGGACACCTCCTAACCATTTAAACAGCAAAAAATGTTGTTTGTACCAGTAGGTGAACACTAAACAAAACGACATGTTGTGACATATCTCCAAAATAATTCTCACTCAAAACAAAACA
Unaligned ( gi|13 ): CGTATTCTTTTATACTCACGCTGATTTCTTTTCCAAATCAGGAGGTTTACAGCACTTCCAATGAGCACTATGAGAACAGATACTACAATGCTCAGGATAATGGCGATGTTGTCATCCGTAGAACTTGTATTGCACGATGATAACGAATCTGGAATATCAGGAAATAAACAGTACCAAGCAATG
Unaligned ( gi|14 ): TCTTATTTTACTAGTAGAGTTGATCGATGTTTTAATAGCAAAAACTTGTCACCCATTAAGGAATACTTTCATGTTATAATTTTTTGCAATTTATAATTATCATTAATGATTTATTCATAAAGGCAATTTCTTAATGTGAATCCTATGTCTTTATTCTTTTAAAAAAATATT
Unaligned ( gi|15 ): AAATCAGGAAGTTTACGACACTCCCAATGAGCACTATGAGAACAGACACTACAACACTGATAATAATGGCGATGTTGTCATCCGTAGAACATGTAGGGCACGATGATATCGCCTCTGTAAATAAAGGAACGAATGCAATCAATGAT
Unaligned ( gi|17 ): TATCTCTCTTGTTGCAAATCGTTTCTTACACTGGTATCTTCTCCACAACAGGATGTTTATGATACTTCCGATAAGAACAATGATAAAAGACGCTACAATGCTGATGATCATCGCCATGGTGTTGTCA
Unaligned ( gi|19 ): TTTACGGGTCATAATTATGACGTTTACCGGTAATTCAAGACATGCATAATTGTAACGTTTGCCGGTAATTCAAGACATACATTA
Unaligned ( gi|21 ): CCAGACCATCAACAGCAAAAATGTGTTAGTACCAGTAGGGGAACACTACAACAGAAGTGGTCATTGAGTG
Unaligned ( gi|22 ): GACACCGCCAGACCATCAACAGCAAAAATGTATTTGTACCAGTAGGTGAACACTACAACATGTGACAATA
Unaligned ( gi|25 ): CANNNNNNNNNNNNNNNNNNNNNNNNNCACTGGTTCCCGTTAC
Alignments
lowQualScore : 11 11 1111 1 1 11111 1 22222 1 1 333333333333333 11111 444444444444 11 33333333333 1111 55555555555555555555555555555555555555 1111111 1 111111 11111111 111111 11 1 11 111 1 3333333333333 111 111 11111111 111111111 1111 222222 11 44444444444444444
lowQualScore : 6 88 8 0 11 0 8 11 0 8 7777 8 8 8 8 8 8 1 0 0 88888 0 3 66666 3 0 5 1 6 6 6 6 333333333333333 5 11111 777 0 4 555555555555 4 00 00000000000 4 777 8 777 44 5555 8 4 2 4 9999 99999999999999999999999999999999999999 4444444 5 5 5 5 5 66 4 4 4 0 4 4 8 4 44 4 66 4 8 4 66 4 4 88888 4 4 4 66 66 1 4 0 5 5 0 5 4 4 4 4 222222 99 0 99999999 111111 77 5 77 5 2 1 11 2 2 5 77 0 111 3 0 2 2222222222222 0 777 8 0 1 444 66666666 999999999 6 99 6 1 1 0 7777 7 888888 33 33333333333333333
lowQualScore : . .. . . .. . . .. . . .... . . . . . . . . . ..... . . ..... . . . . . . . . ............... . ..... ... . . ............ . .. ........... . ... . ... .. .... . . . . .... ...................................... ....... . . . . . .. . . . . . . . . .. . .. . . . .. . . ..... . . . .. .. . . . . . . . . . . . ...... .. . ........ ...... .. . .. . . . .. . . . .. . ... . . . ............. . ... . . . ... ........ ......... . .. . . . . .... . ...... .. .................
lowQualScore : 0 88 0 8 00 8 0 00 8 0 0000 0 0 0 0 0 0 0 5 0 55555 0 2 00000 2 0 5 0 7 7 7 7 777777777777777 7 11111 888 9 4 666666666666 4 66 00000000000 4 888 9 888 66 8888 9 4 6 4 4444 66666666666666666666666666666666666666 4444444 0 0 0 0 0 11 4 4 4 7 4 4 9 4 66 4 11 4 9 4 11 4 4 22222 4 4 4 11 11 1 4 2 0 0 0 0 4 4 4 4 888888 88 1 33333333 444444 99 7 44 7 5 0 00 5 5 5 00 8 000 2 0 5 8888888888888 8 555 0 8 4 000 88888888 333333333 7 22 7 0 0 8 0000 0 222222 88 55555555555555555
consensus : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GCGAAT-TTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
Reference ( family-1357 ) : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GCAAAT-TTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
gi|1 : GTGACAATATCGCGGGTAATCCA-A--CTACAGGG-ACA--AT-ATCAT----GTCATT-AG-AC-AAAGAA-G-AG-TCAGTGAACAAAAACGCGATACTT-GCCAAATTTG-AC--A-A--AAAACAATGGAACTAAAATAGAGACAATCGGATTTCTTGG-CTA-----AACTCAAGTATATGTACAACTG---TAT-A------------AT-TT--GCC----------TCACT---ATCTTACCA---ATACATGTACATTG-CA-TT-GAAGCCCTAAG-CTAATCC----TA----------------CCTAATTGTCTTA---------AT-------TGTTGTAT-AAACACTCT-GCAAAT-TTAACCTCTCACCTATGCTAACCTTGCCTTGGACCTGT-GTTTACCAATTTACCTCACCAC-AT-GGCAC-TTGA--AGC-CA-CACCAAAACCCTTAGAGGGCTCTA-ATTG--T----ACAAACACCGTGCATATGTA-TACT--C--TTGTGAACAT-GAT-TTGCTTTA-GACC--TGA--TGAAGACCCACTAGGG-TC-T---------------GAA-ATAAA-TTAAAGTCA-ATCAAAAA-GA-TAGTGTTACATGTATC-ATTCCATATGCATTTC
gi|10 : ttcaccctccccacactaaaagtgctataaaaatacagccaagccctaagataacacatactcaactcagatagcaccactcgtagcatgaccaactccaagaacctgaccatatgcattccagcatctctgatataaccaccgattaattaacaaccagttggaataaggctaagaccaaaccactggaactcattactgcagtaacaacacagcagagacatgaaggtgacaggatactccgtctgtattaacctatcacccaggattaaggccctatcaaacgcctatgccaaggaaatacaatatgttatccgaaggacgaaaattaaaggaactattccctaaacctcccgtcattgcttaccagcaaccttctaatatccaaaagttatgctggtacatagtgaacttgcgcctgcatgccaagagggacctttccttgtaaaaaaaaaaaaacaaacctcgcttcaacactttgcccattcattgccagtaatggcaatatccgaattccaattcaggaaatctcagcaatcaaggccacttcacatgtgaaacttaaaaatctgtttgtatttgattaaatgcagtgtatgttccatcatgttacattggagaaacgtgtccaaaaataagaaaccgcatacaatggacaccgccagaccatcaacagcaaaaaatgtttgtaccagtaggtgaacactacaataaagtggacattgttgATATTCTG---ATTCTA-TTTCAT-ACTTTGTT-AT----TTGCTATCA-TTTA-C-AATGTCAACCAATCTTGAATCAT-G-AATAAATCACAAACTC---TTTACTGGTGTT--TTCCTTT-----GGAT-GTGTTGACCA--T-AGTTCAGGAATAAAC-----GAAGCCTGGGTTGAAT-----TTTACTAGAGCCAGTCGATCACCAGAGTTACTGCCCCTGAAATACTGGTTCCAGT
gi|11 : catctctgttgccaagctctctCG---C--GA-CAACAAGCGTCTAGT-TTAA-AT----TATACTTC--TACTGTGATAATTTGGAAA-TATATTTTGTT-A-ATTGGT-ATCAACTTGACA-----------------AATAAATCT---ATTAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCAT-TTTGAACTTGGGGTAAATTTAAATTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTTGTTCCCGtacaat
gi|16 : t--TTGAA---GT-GTT-ACCGTTT-ACCT-AT-AT-ATCAACAC-GTGC--AGT-CAATACCACAACCCTTGG---GCTCTA-ATTG--TTTGTATAAACATCGTGCATATGTA-TAAT--C--TTGTGAACTT-GATATT--TTCA-GACC--TG---TGAAGACTCACTAGGG-
gi|18 : aacggtAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-ATGT--ACCA--TAAGTCTA-GAATCACCATAT--GAACTTGGGGTAAA------TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTG
gi|2 : -----G---TAT-A------------AA-TT--GCG----------TC-CT---ACGTTACCA---AAATGT-TAC-CT--C--TT-GAAGCC-T--G-CTAATCC----TA----------------C---------TTA---------ATGTCTTAATGTTGTATCAAACATTCTCGTGAAT-CTA-CATCTCACCTATGCTAAA-ATG--TTGGAG-T-T-GTT-ACCCATT-ACAT-ACAAC-AT--GCACTTTGAAGAGCACA-CACCACCA-CCTTGCATGGCTCTACATTGATCT-ATATAAACAACGTGCATATGTACTACT--TTATTATGAACAT-GAT-TTGCTTCACGACCAGTGATCTGAAGACCCGCTAGGG-TCGTAAAGGTATGTCTC-GGAAGATAAACTTATCGTTGAACCAAAAA-GAGTGGTGT------TATC-TTTCATTATTCATTTC--CAAGTT------A-CCG---CCGAATCAACA--CGGC-A-T--TGAGATAA
gi|20 : gttttgagtcaaatgcgaggtaatgtttcatatgcactaagtcgcacatgaaagaataaaaactagttggcttaaaatgatagctcagacgacattcaatggacgagtaactcgcaatacctcaaccagaagctgttttgactgctgatagttgacactggaataaagtaggacagcttcttgttgacaattaattatgggcgtaatcaaacagtgaagacctaatattcgtgacaattatagtcaaaaaatgcaacgcaaagaactggatctgaccaaacttagagttctacaaaattaagccatgacgctgataatagattttcatacgattctttagagcactattgtaatttaaacct-----G---TAT-A------------AA-TT--GC-----------TC-CT---AT-TTAGCA---ATACATGTAC-CTGAT--TT-GAAGCC-TATG-CTAATCC----TA----------------C---------TTA---------AT-------Tacgctttaccattaataattcattgacctacgtgtattttgtcttttagatgcaaatgtgttatcataaatattttgtcaaacttcaa
gi|23 : attacaactTTACT-----T--TTA---T-----AAAG-ATGTTGACCA--T-AGTCTAAGAATCACCATATT-GAACTTG
gi|24 : A-TCAGAATTG-ATT------GA-TAGTGT------TATC-ATTCTATATGCATTTCTCCAA
gi|3 : TACTTGTCACAATAT-GCGGGTA-TCCATA--CTACAGGACACA--ATTACC-T----GACATT-AG-AC-AAAGAACG-AT-TCACCGAACAGAAAT-TGAT---T-GCCAAATTCG-ACTGT-GCAAAAACAATGGA-CTAAA-TAGAGCAA-TCGGATTT-T-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-T--TT-GAAGCC-TAGG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GGCGATATTA-CCTCTCACCTATGCTAAA-TT---TTGGAC-TGT-GTT-ACCCATT-ACCT-AC-ACCAT-GGCAC-TTGA--AGC-CA-CACTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACAC-GTGCATATGTA-TACT--T--TTATGAACAT-GAT-TTGCTTCA-A--C--TGA--TGAAGACC-GCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TG-TGT------TATC--TTCCATATATATTTCTTCAAGTA------AACCG---C--GATCAACA--CGGCTA-TTATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-CTTATT-A-TT-GTT-ATCAACTTGACAT-A-TTTATT-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAATCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGACTCACCATATTGAAACTTGGGGT-AAT-----TTT--CAGAACCAGT--------AGT------GCATTTGGCATACTGGTTCCCGT
gi|4 : TACTTGTCACAA-AT-GCGGGTA-TCCATAACTTACAG---ACA--ATTACC-T----GACATTTAG-AC-AAAGAA-G-AGGTCACCGAAC-AAAAT-TGAT---TTGCCAAATTCGGACTGCCA--AAAACAA--GA-CTAAAATAGAGACA-TCGGATTT-T-GC-CTA-----A---C-----T-T-TA-----G---TGTTA------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TTTGAAAGC-TAGGGCTAATCC----TA----------------C---------TTA---------AT--------GTTGTAT-AAA--TTCT-GCGA-T-TTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGTTGTT-ACCCAT--ACCT-AC-AC-AT-G-CAC-T-GA--AGC-CA-C-CTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACACCGTGCATATGT--TATTACT--TTATGAACATAGAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGGTTCGT-AAGCTA-GTCTCAGGAA-AT-AA-TTATA-TTG-ATCAAAAA-GA-TGGTG-------TATCTTTTCCATATATATT--CTCAAGTTGACTACG-CCG---A--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTCATTACTGTGATATTTTGGAAA-TATA--TTATTAA-TTTGTTCATCAACTTGACAT-ATTTTATCTCCTGTTAACAAATCT---ATTATGTTAATTTATCA-ACTCTCAAACTTATA-----TGATTG---TGAGTGAAAGCGTGTTAGCGAGGT-GGT-TAGGACTCAC
gi|5 : tggaaTTGTGACAATAT-GCTGGTA-TCCATA--ATACAGGG-ACT--ATTACC-TAGCTGACATT-AG-AC-AAAGAA-G-AG-TCAATGAACGAAAAC-TGAT---T-GCCAAATTTG-ACTGT-G--AAAACAATGGA-CTAAA-TAGAGACA-TTGGATTTCT-GG-CTATTAGTA---------TAT-TA-----GAACTGT-A------------TA-TTTTGT-----------TC-AT---AT-TTACCA---ATAAATGTTC-ATG-CA-TT-GAAGCC-TTTG-CTACTCG----TA----------------C---------TTAATTTTCTTAAT-------TGTTGTAT-AAACATTCT-GCACAT-TTA-CCTCTCACCTATGCTAAA-CTA--TTGGAC-TGT-ATT-ACCAAGT-ACCT-AC-AG-AT-GGCAC-TTGA--AGC-CA-TACCACAGCCCTTAGATAGCTCTA-ATTG--TT-GTACAAACATCGTGTATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTTA-GACA--TGA--TGAAGACCGGCTAGGG-TCAT-AAACTA-GTCTC-TGAA-ATAAA-TTATAGTTG-ATCATAAA-GA-TGGTGT------TATC-ATTCTATATGCATTTCTTCAAGTA------A-CCGTGAC--GATCAACA--CGGCTA-T-ATGA-AAAGCGT
gi|6 : ctacaacaaaagtggacattg-----A---C-----TAT-TA-----G---T---A------------CA-TT--GCAATTTTAATTTTC-CTTTTAT-TTACCAGGTATACATGTAC-ATG-CACTT-GAAACC-TATG-CTAATCC----TATTTTCTGGGATGTTGGC---------TTC---------AT-------TATTGTGT-AAATTTTCT-GCAAAA-TTT-CCTCTCATCTGTCCTAAA-ATG--TTGGAC-TGT-GTT-ACCATTT-ACCT-AC-AT-AG-GGCAC-TTGA--AAC-CAATACCACAGCCCATAGATGGTTCTA-ATTG--TT-GTACAGACACCGTGCATATGTA-TATT--C--TTGTGAAAAT-GAT-TTACTTTA-GAAT--TGA--CGAATACCAGCTAGGG-TTGT-AGGCTA-GTCTCTGTAA-ATAAA-TAGCAGTTT-ATCATAAA-GA-TGGTGT------TATC-ATTTTATGTGCATgctgacggttcatcttgtataaatgttttttattaaaattttgaaaaatgacaaaatgtaatttgtaatttaattaatacttta
gi|7 : ttagttattcA-TCACACTTCT-AAACTA---------C-----TAT-TA-----G---TGT-ATTACAACTGTATAACTT--GC-----------TC-CT---AT-TTACCA---ATACATGTA---------------GCC-TAGG-CTAATCC----TA----------------C---------TTAATTGTCTTAAT-------TGTTGTAT-AAACATTCT-GCAAAT-TTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAAGT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCTTTAGATGGCTCTA-ATTG--TT-ATACAAGCACCATGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCAT-AACCTA-ATCTC-GGAA-ATAAA-TTATAGATG-ATCAAAAA-GA-TGGTGT------TATC-TTTCCATATATATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAAC----ACTTC--TAattgttttcatactcacgctgatttctcttccaaaccaggaagttaacggtacttcctatgagcactatgagaacagacactacaacactgataataatggtcatgttgtcatccgtagaacttgtaggacacgacgataacgcctctgcaaataaaggtaataaactctatcagtgata
gi|8 : AGAGTCA-TTGGATTTCT-GG-CTA-----A---C-----TAT-TG-----G---TGT-ATTACAACTGTATAA-TTT-GC-----------TC-CT---AT-TTACCA---ATACAGGTAC-CTG-C--TTTGAAGCC-TATG-CTAGTCCAACTTAATTGT-----------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GCAAAT-TTA-CCTCTCACCTATGCTACA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AA-TGCAT-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGAT-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-AACC--TGA--TGAAGACCCGCCAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAATTG-ATCAAAAATTA-TGGTGG------CATC-TTTCCATA-ATATTTCTTCAAGTT------A-CCA---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTTTACTAA--GA-TGTGATAaacaatcaatatgaaattcatacatactaaaaacccatgaagattgtaatatactt
gi|9 : TTGTGACAAAA--GCGGGTA-TC-ATA--C-ACAGGG-ACATAATTACC-T----GACATT-AGAACAAAAGAA-GAAG-TCagctacatatgacatccaatatt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAATTTCAATGCAGTCATATCTTCACTGTACACTGGAGAAACGTTCGCCTAAAAAAAATAAGAACCGCATCAATGGACACCTCCTAACCATTTAAACAGCAAAAAATGTTGTTTGTACCAGTAGGTGAACACTAAACAAAACGACATGTTGTGACATATCTCCAAAATAATTCTCACTCAAAACAAAACA
Unaligned ( gi|13 ): CGTATTCTTTTATACTCACGCTGATTTCTTTTCCAAATCAGGAGGTTTACAGCACTTCCAATGAGCACTATGAGAACAGATACTACAATGCTCAGGATAATGGCGATGTTGTCATCCGTAGAACTTGTATTGCACGATGATAACGAATCTGGAATATCAGGAAATAAACAGTACCAAGCAATG
Unaligned ( gi|14 ): TCTTATTTTACTAGTAGAGTTGATCGATGTTTTAATAGCAAAAACTTGTCACCCATTAAGGAATACTTTCATGTTATAATTTTTTGCAATTTATAATTATCATTAATGATTTATTCATAAAGGCAATTTCTTAATGTGAATCCTATGTCTTTATTCTTTTAAAAAAATATT
Unaligned ( gi|15 ): AAATCAGGAAGTTTACGACACTCCCAATGAGCACTATGAGAACAGACACTACAACACTGATAATAATGGCGATGTTGTCATCCGTAGAACATGTAGGGCACGATGATATCGCCTCTGTAAATAAAGGAACGAATGCAATCAATGAT
Unaligned ( gi|17 ): TATCTCTCTTGTTGCAAATCGTTTCTTACACTGGTATCTTCTCCACAACAGGATGTTTATGATACTTCCGATAAGAACAATGATAAAAGACGCTACAATGCTGATGATCATCGCCATGGTGTTGTCA
Unaligned ( gi|19 ): TTTACGGGTCATAATTATGACGTTTACCGGTAATTCAAGACATGCATAATTGTAACGTTTGCCGGTAATTCAAGACATACATTA
Unaligned ( gi|21 ): CCAGACCATCAACAGCAAAAATGTGTTAGTACCAGTAGGGGAACACTACAACAGAAGTGGTCATTGAGTG
Unaligned ( gi|22 ): GACACCGCCAGACCATCAACAGCAAAAATGTATTTGTACCAGTAGGTGAACACTACAACATGTGACAATA
Unaligned ( gi|25 ): CANNNNNNNNNNNNNNNNNNNNNNNNNCACTGGTTCCCGTTAC
Alignments
lowQualScore : 11 11 1111 1 1 11111 1 22222 1 1 333333333333333 11111 444444444444 11 33333333333 1111 55555555555555555555555555555555555555 1111111 1 111111 11111111 111111 11 1 11 111 1 3333333333333 111 111 11111111 111111111 1111 222222 11 44444444444444444
lowQualScore : 6 88 8 0 11 0 8 11 0 8 7777 8 8 8 8 8 8 1 0 0 88888 0 3 66666 3 0 5 1 6 6 6 6 333333333333333 5 11111 777 0 4 555555555555 4 00 00000000000 4 777 8 777 44 5555 8 4 2 4 9999 99999999999999999999999999999999999999 4444444 5 5 5 0 5 5 66 4 4 4 0 4 4 8 4 44 4 66 4 8 4 66 4 4 88888 4 4 4 66 66 1 4 0 5 5 0 5 4 4 4 4 222222 99 0 99999999 111111 77 5 77 5 2 1 11 2 2 5 77 0 111 3 0 2 2222222222222 0 777 8 0 1 444 66666666 999999999 6 99 6 1 1 0 7777 7 888888 33 33333333333333333
lowQualScore : . .. . . .. . . .. . . .... . . . . . . . . . ..... . . ..... . . . . . . . . ............... . ..... ... . . ............ . .. ........... . ... . ... .. .... . . . . .... ...................................... ....... . . . . . . .. . . . . . . . . .. . .. . . . .. . . ..... . . . .. .. . . . . . . . . . . . ...... .. . ........ ...... .. . .. . . . .. . . . .. . ... . . . ............. . ... . . . ... ........ ......... . .. . . . . .... . ...... .. .................
lowQualScore : 0 88 0 8 00 8 0 00 8 0 0000 0 0 0 0 0 0 0 5 0 55555 0 2 00000 2 0 5 0 7 7 7 7 777777777777777 7 11111 888 9 4 666666666666 4 66 00000000000 4 888 9 888 66 8888 9 4 6 4 4444 66666666666666666666666666666666666666 4444444 0 0 0 4 0 0 11 4 4 4 7 4 4 9 4 66 4 11 4 9 4 11 4 4 22222 4 4 4 11 11 1 4 2 0 0 0 0 4 4 4 4 888888 88 1 33333333 444444 99 7 44 7 5 0 00 5 5 5 00 8 000 2 0 5 8888888888888 8 555 0 8 4 000 88888888 333333333 7 22 7 0 0 8 0000 0 222222 88 55555555555555555
consensus : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-G-CGAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
Reference ( family-1357 ) : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-G-CGAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
gi|1 : GTGACAATATCGCGGGTAATCCA-A--CTACAGGG-ACA--AT-ATCAT----GTCATT-AG-AC-AAAGAA-G-AG-TCAGTGAACAAAAACGCGATACTT-GCCAAATTTG-AC--A-A--AAAACAATGGAACTAAAATAGAGACAATCGGATTTCTTGG-CTA-----AACTCAAGTATATGTACAACTG---TAT-A------------AT-TT--GCC----------TCACT---ATCTTACCA---ATACATGTACATTG-CA-TT-GAAGCCCTAAG-CTAATCC----TA----------------CCTAATTGTCTTA---------AT-------TGTTGTAT-AAACACTCT-G-CAAATTTAACCTCTCACCTATGCTAACCTTGCCTTGGACCTGT-GTTTACCAATTTACCTCACCAC-AT-GGCAC-TTGA--AGC-CA-CACCAAAACCCTTAGAGGGCTCTA-ATTG--T----ACAAACACCGTGCATATGTA-TACT--C--TTGTGAACAT-GAT-TTGCTTTA-GACC--TGA--TGAAGACCCACTAGGG-TC-T---------------GAA-ATAAA-TTAAAGTCA-ATCAAAAA-GA-TAGTGTTACATGTATC-ATTCCATATGCATTTC
gi|10 : ttcaccctccccacactaaaagtgctataaaaatacagccaagccctaagataacacatactcaactcagatagcaccactcgtagcatgaccaactccaagaacctgaccatatgcattccagcatctctgatataaccaccgattaattaacaaccagttggaataaggctaagaccaaaccactggaactcattactgcagtaacaacacagcagagacatgaaggtgacaggatactccgtctgtattaacctatcacccaggattaaggccctatcaaacgcctatgccaaggaaatacaatatgttatccgaaggacgaaaattaaaggaactattccctaaacctcccgtcattgcttaccagcaaccttctaatatccaaaagttatgctggtacatagtgaacttgcgcctgcatgccaagagggacctttccttgtaaaaaaaaaaaaacaaacctcgcttcaacactttgcccattcattgccagtaatggcaatatccgaattccaattcaggaaatctcagcaatcaaggccacttcacatgtgaaacttaaaaatctgtttgtatttgattaaatgcagtgtatgttccatcatgttacattggagaaacgtgtccaaaaataagaaaccgcatacaatggacaccgccagaccatcaacagcaaaaaatgtttgtaccagtaggtgaacactacaataaagtggacattgttgATATTCTG---ATTCTA-TTTCAT-ACTTTGTT-AT----TTGCTATCA-TTTA-C-AATGTCAACCAATCTTGAATCAT-G-AATAAATCACAAACTC---TTTACTGGTGTT--TTCCTTT-----GGAT-GTGTTGACCA--T-AGTTCAGGAATAAAC-----GAAGCCTGGGTTGAAT-----TTTACTAGAGCCAGTCGATCACCAGAGTTACTGCCCCTGAAATACTGGTTCCAGT
gi|11 : catctctgttgccaagctctctCG---C--GA-CAACAAGCGTCTAGT-TTAA-AT----TATACTTC--TACTGTGATAATTTGGAAA-TATATTTTGTT-A-ATTGGT-ATCAACTTGACA-----------------AATAAATCT---ATTAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCAT-TTTGAACTTGGGGTAAATTTAAATTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTTGTTCCCGtacaat
gi|16 : t--TTGAA---GT-GTT-ACCGTTT-ACCT-AT-AT-ATCAACAC-GTGC--AGT-CAATACCACAACCCTTGG---GCTCTA-ATTG--TTTGTATAAACATCGTGCATATGTA-TAAT--C--TTGTGAACTT-GATATT--TTCA-GACC--TG---TGAAGACTCACTAGGG-
gi|18 : aacggtAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-ATGT--ACCA--TAAGTCTA-GAATCACCATAT--GAACTTGGGGTAAA------TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTG
gi|2 : -----G---TAT-A------------AA-TT--GCG----------TC-CT---ACGTTACCA---AAATGT-TAC-CT--C--TT-GAAGCC-T--G-CTAATCC----TA----------------C---------TTA---------ATGTCTTAATGTTGTATCAAACATTCTCG-TGAATCTA-CATCTCACCTATGCTAAA-ATG--TTGGAG-T-T-GTT-ACCCATT-ACAT-ACAAC-AT--GCACTTTGAAGAGCACA-CACCACCA-CCTTGCATGGCTCTACATTGATCT-ATATAAACAACGTGCATATGTACTACT--TTATTATGAACAT-GAT-TTGCTTCACGACCAGTGATCTGAAGACCCGCTAGGG-TCGTAAAGGTATGTCTC-GGAAGATAAACTTATCGTTGAACCAAAAA-GAGTGGTGT------TATC-TTTCATTATTCATTTC--CAAGTT------A-CCG---CCGAATCAACA--CGGC-A-T--TGAGATAA
gi|20 : gttttgagtcaaatgcgaggtaatgtttcatatgcactaagtcgcacatgaaagaataaaaactagttggcttaaaatgatagctcagacgacattcaatggacgagtaactcgcaatacctcaaccagaagctgttttgactgctgatagttgacactggaataaagtaggacagcttcttgttgacaattaattatgggcgtaatcaaacagtgaagacctaatattcgtgacaattatagtcaaaaaatgcaacgcaaagaactggatctgaccaaacttagagttctacaaaattaagccatgacgctgataatagattttcatacgattctttagagcactattgtaatttaaacct-----G---TAT-A------------AA-TT--GC-----------TC-CT---AT-TTAGCA---ATACATGTAC-CTGAT--TT-GAAGCC-TATG-CTAATCC----TA----------------C---------TTA---------AT-------Tacgctttaccattaataattcattgacctacgtgtattttgtcttttagatgcaaatgtgttatcataaatattttgtcaaacttcaa
gi|23 : attacaactTTACT-----T--TTA---T-----AAAG-ATGTTGACCA--T-AGTCTAAGAATCACCATATT-GAACTTG
gi|24 : A-TCAGAATTG-ATT------GA-TAGTGT------TATC-ATTCTATATGCATTTCTCCAA
gi|3 : TACTTGTCACAATAT-GCGGGTA-TCCATA--CTACAGGACACA--ATTACC-T----GACATT-AG-AC-AAAGAACG-AT-TCACCGAACAGAAAT-TGAT---T-GCCAAATTCG-ACTGT-GCAAAAACAATGGA-CTAAA-TAGAGCAA-TCGGATTT-T-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-T--TT-GAAGCC-TAGG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GGCGATATTA-CCTCTCACCTATGCTAAA-TT---TTGGAC-TGT-GTT-ACCCATT-ACCT-AC-ACCAT-GGCAC-TTGA--AGC-CA-CACTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACAC-GTGCATATGTA-TACT--T--TTATGAACAT-GAT-TTGCTTCA-A--C--TGA--TGAAGACC-GCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TG-TGT------TATC--TTCCATATATATTTCTTCAAGTA------AACCG---C--GATCAACA--CGGCTA-TTATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-CTTATT-A-TT-GTT-ATCAACTTGACAT-A-TTTATT-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAATCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGACTCACCATATTGAAACTTGGGGT-AAT-----TTT--CAGAACCAGT--------AGT------GCATTTGGCATACTGGTTCCCGT
gi|4 : TACTTGTCACAA-AT-GCGGGTA-TCCATAACTTACAG---ACA--ATTACC-T----GACATTTAG-AC-AAAGAA-G-AGGTCACCGAAC-AAAAT-TGAT---TTGCCAAATTCGGACTGCCA--AAAACAA--GA-CTAAAATAGAGACA-TCGGATTT-T-GC-CTA-----A---C-----T-T-TA-----G---TGTTA------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TTTGAAAGC-TAGGGCTAATCC----TA----------------C---------TTA---------AT--------GTTGTAT-AAA--TTCT-G-CGA-TTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGTTGTT-ACCCAT--ACCT-AC-AC-AT-G-CAC-T-GA--AGC-CA-C-CTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACACCGTGCATATGT--TATTACT--TTATGAACATAGAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGGTTCGT-AAGCTA-GTCTCAGGAA-AT-AA-TTATA-TTG-ATCAAAAA-GA-TGGTG-------TATCTTTTCCATATATATT--CTCAAGTTGACTACG-CCG---A--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTCATTACTGTGATATTTTGGAAA-TATA--TTATTAA-TTTGTTCATCAACTTGACAT-ATTTTATCTCCTGTTAACAAATCT---ATTATGTTAATTTATCA-ACTCTCAAACTTATA-----TGATTG---TGAGTGAAAGCGTGTTAGCGAGGT-GGT-TAGGACTCAC
gi|5 : tggaaTTGTGACAATAT-GCTGGTA-TCCATA--ATACAGGG-ACT--ATTACC-TAGCTGACATT-AG-AC-AAAGAA-G-AG-TCAATGAACGAAAAC-TGAT---T-GCCAAATTTG-ACTGT-G--AAAACAATGGA-CTAAA-TAGAGACA-TTGGATTTCT-GG-CTATTAGTA---------TAT-TA-----GAACTGT-A------------TA-TTTTGT-----------TC-AT---AT-TTACCA---ATAAATGTTC-ATG-CA-TT-GAAGCC-TTTG-CTACTCG----TA----------------C---------TTAATTTTCTTAAT-------TGTTGTAT-AAACATTCT-G-CACATTTA-CCTCTCACCTATGCTAAA-CTA--TTGGAC-TGT-ATT-ACCAAGT-ACCT-AC-AG-AT-GGCAC-TTGA--AGC-CA-TACCACAGCCCTTAGATAGCTCTA-ATTG--TT-GTACAAACATCGTGTATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTTA-GACA--TGA--TGAAGACCGGCTAGGG-TCAT-AAACTA-GTCTC-TGAA-ATAAA-TTATAGTTG-ATCATAAA-GA-TGGTGT------TATC-ATTCTATATGCATTTCTTCAAGTA------A-CCGTGAC--GATCAACA--CGGCTA-T-ATGA-AAAGCGT
gi|6 : ctacaacaaaagtggacattg-----A---C-----TAT-TA-----G---T---A------------CA-TT--GCAATTTTAATTTTC-CTTTTAT-TTACCAGGTATACATGTAC-ATG-CACTT-GAAACC-TATG-CTAATCC----TATTTTCTGGGATGTTGGC---------TTC---------AT-------TATTGTGT-AAATTTTCT-G-CAAAATTT-CCTCTCATCTGTCCTAAA-ATG--TTGGAC-TGT-GTT-ACCATTT-ACCT-AC-AT-AG-GGCAC-TTGA--AAC-CAATACCACAGCCCATAGATGGTTCTA-ATTG--TT-GTACAGACACCGTGCATATGTA-TATT--C--TTGTGAAAAT-GAT-TTACTTTA-GAAT--TGA--CGAATACCAGCTAGGG-TTGT-AGGCTA-GTCTCTGTAA-ATAAA-TAGCAGTTT-ATCATAAA-GA-TGGTGT------TATC-ATTTTATGTGCATgctgacggttcatcttgtataaatgttttttattaaaattttgaaaaatgacaaaatgtaatttgtaatttaattaatacttta
gi|7 : ttagttattcA-TCACACTTCT-AAACTA---------C-----TAT-TA-----G---TGT-ATTACAACTGTATAACTT--GC-----------TC-CT---AT-TTACCA---ATACATGTA---------------GCC-TAGG-CTAATCC----TA----------------C---------TTAATTGTCTTAAT-------TGTTGTAT-AAACATTCT-G-CAAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAAGT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCTTTAGATGGCTCTA-ATTG--TT-ATACAAGCACCATGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCAT-AACCTA-ATCTC-GGAA-ATAAA-TTATAGATG-ATCAAAAA-GA-TGGTGT------TATC-TTTCCATATATATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAAC----ACTTC--TAattgttttcatactcacgctgatttctcttccaaaccaggaagttaacggtacttcctatgagcactatgagaacagacactacaacactgataataatggtcatgttgtcatccgtagaacttgtaggacacgacgataacgcctctgcaaataaaggtaataaactctatcagtgata
gi|8 : AGAGTCA-TTGGATTTCT-GG-CTA-----A---C-----TAT-TG-----G---TGT-ATTACAACTGTATAA-TTT-GC-----------TC-CT---AT-TTACCA---ATACAGGTAC-CTG-C--TTTGAAGCC-TATG-CTAGTCCAACTTAATTGT-----------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-G-CAAATTTA-CCTCTCACCTATGCTACA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AA-TGCAT-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGAT-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-AACC--TGA--TGAAGACCCGCCAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAATTG-ATCAAAAATTA-TGGTGG------CATC-TTTCCATA-ATATTTCTTCAAGTT------A-CCA---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTTTACTAA--GA-TGTGATAaacaatcaatatgaaattcatacatactaaaaacccatgaagattgtaatatactt
gi|9 : TTGTGACAAAA--GCGGGTA-TC-ATA--C-ACAGGG-ACATAATTACC-T----GACATT-AGAACAAAAGAA-GAAG-TCagctacatatgacatccaatatt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAATTTCAATGCAGTCATATCTTCACTGTACACTGGAGAAACGTTCGCCTAAAAAAAATAAGAACCGCATCAATGGACACCTCCTAACCATTTAAACAGCAAAAAATGTTGTTTGTACCAGTAGGTGAACACTAAACAAAACGACATGTTGTGACATATCTCCAAAATAATTCTCACTCAAAACAAAACA
Unaligned ( gi|13 ): CGTATTCTTTTATACTCACGCTGATTTCTTTTCCAAATCAGGAGGTTTACAGCACTTCCAATGAGCACTATGAGAACAGATACTACAATGCTCAGGATAATGGCGATGTTGTCATCCGTAGAACTTGTATTGCACGATGATAACGAATCTGGAATATCAGGAAATAAACAGTACCAAGCAATG
Unaligned ( gi|14 ): TCTTATTTTACTAGTAGAGTTGATCGATGTTTTAATAGCAAAAACTTGTCACCCATTAAGGAATACTTTCATGTTATAATTTTTTGCAATTTATAATTATCATTAATGATTTATTCATAAAGGCAATTTCTTAATGTGAATCCTATGTCTTTATTCTTTTAAAAAAATATT
Unaligned ( gi|15 ): AAATCAGGAAGTTTACGACACTCCCAATGAGCACTATGAGAACAGACACTACAACACTGATAATAATGGCGATGTTGTCATCCGTAGAACATGTAGGGCACGATGATATCGCCTCTGTAAATAAAGGAACGAATGCAATCAATGAT
Unaligned ( gi|17 ): TATCTCTCTTGTTGCAAATCGTTTCTTACACTGGTATCTTCTCCACAACAGGATGTTTATGATACTTCCGATAAGAACAATGATAAAAGACGCTACAATGCTGATGATCATCGCCATGGTGTTGTCA
Unaligned ( gi|19 ): TTTACGGGTCATAATTATGACGTTTACCGGTAATTCAAGACATGCATAATTGTAACGTTTGCCGGTAATTCAAGACATACATTA
Unaligned ( gi|21 ): CCAGACCATCAACAGCAAAAATGTGTTAGTACCAGTAGGGGAACACTACAACAGAAGTGGTCATTGAGTG
Unaligned ( gi|22 ): GACACCGCCAGACCATCAACAGCAAAAATGTATTTGTACCAGTAGGTGAACACTACAACATGTGACAATA
Unaligned ( gi|25 ): CANNNNNNNNNNNNNNNNNNNNNNNNNCACTGGTTCCCGTTAC
Alignments
lowQualScore : 11 11 1111 1 1 11111 1 22222 1 1 333333333333333 11111 444444444444 11 33333333333 1111 55555555555555555555555555555555555555 1111111 1 111111 11111111 111111 11 1 11 111 1 3333333333333 111 111 11111111 111111111 1111 222222 11 44444444444444444
lowQualScore : 6 88 8 0 11 0 8 11 0 8 7777 8 8 8 8 8 8 1 0 0 88888 0 3 66666 3 0 5 1 6 6 6 6 333333333333333 5 11111 777 0 4 555555555555 4 00 00000000000 4 777 8 777 44 5555 8 4 2 4 9999 99999999999999999999999999999999999999 4444444 5 5 5 0 5 5 66 4 4 4 0 4 4 8 4 44 4 66 4 8 4 66 4 4 88888 4 4 4 66 66 1 4 0 5 5 0 5 4 4 4 4 222222 99 0 99999999 111111 77 5 77 5 2 1 11 2 2 5 77 0 111 3 0 2 2222222222222 0 777 8 0 1 444 66666666 999999999 6 99 6 1 1 0 7777 7 888888 33 33333333333333333
lowQualScore : . .. . . .. . . .. . . .... . . . . . . . . . ..... . . ..... . . . . . . . . ............... . ..... ... . . ............ . .. ........... . ... . ... .. .... . . . . .... ...................................... ....... . . . . . . .. . . . . . . . . .. . .. . . . .. . . ..... . . . .. .. . . . . . . . . . . . ...... .. . ........ ...... .. . .. . . . .. . . . .. . ... . . . ............. . ... . . . ... ........ ......... . .. . . . . .... . ...... .. .................
lowQualScore : 0 88 0 8 00 8 0 00 8 0 0000 0 0 0 0 0 0 0 5 0 55555 0 2 00000 2 0 5 0 7 7 7 7 777777777777777 7 11111 888 9 4 666666666666 4 66 00000000000 4 888 9 888 66 8888 9 4 6 4 4444 66666666666666666666666666666666666666 4444444 0 0 0 4 0 0 11 4 4 4 7 4 4 9 4 66 4 11 4 9 4 11 4 4 22222 4 4 4 11 11 1 4 2 0 0 0 0 4 4 4 4 888888 88 1 33333333 444444 99 7 44 7 5 0 00 5 5 5 00 8 000 2 0 5 8888888888888 8 555 0 8 4 000 88888888 333333333 7 22 7 0 0 8 0000 0 222222 88 55555555555555555
consensus : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-G-CGAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
Reference ( family-1357 ) : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-G-CGAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
gi|1 : GTGACAATATCGCGGGTAATCCA-A--CTACAGGG-ACA--AT-ATCAT----GTCATT-AG-AC-AAAGAA-G-AG-TCAGTGAACAAAAACGCGATACTT-GCCAAATTTG-AC--A-A--AAAACAATGGAACTAAAATAGAGACAATCGGATTTCTTGG-CTA-----AACTCAAGTATATGTACAACTG---TAT-A------------AT-TT--GCC----------TCACT---ATCTTACCA---ATACATGTACATTG-CA-TT-GAAGCCCTAAG-CTAATCC----TA----------------CCTAATTGTCTTA---------AT-------TGTTGTAT-AAACACTCT-G-CAAATTTAACCTCTCACCTATGCTAACCTTGCCTTGGACCTGT-GTTTACCAATTTACCTCACCAC-AT-GGCAC-TTGA--AGC-CA-CACCAAAACCCTTAGAGGGCTCTA-ATTG--T----ACAAACACCGTGCATATGTA-TACT--C--TTGTGAACAT-GAT-TTGCTTTA-GACC--TGA--TGAAGACCCACTAGGG-TC-T---------------GAA-ATAAA-TTAAAGTCA-ATCAAAAA-GA-TAGTGTTACATGTATC-ATTCCATATGCATTTC
gi|10 : ttcaccctccccacactaaaagtgctataaaaatacagccaagccctaagataacacatactcaactcagatagcaccactcgtagcatgaccaactccaagaacctgaccatatgcattccagcatctctgatataaccaccgattaattaacaaccagttggaataaggctaagaccaaaccactggaactcattactgcagtaacaacacagcagagacatgaaggtgacaggatactccgtctgtattaacctatcacccaggattaaggccctatcaaacgcctatgccaaggaaatacaatatgttatccgaaggacgaaaattaaaggaactattccctaaacctcccgtcattgcttaccagcaaccttctaatatccaaaagttatgctggtacatagtgaacttgcgcctgcatgccaagagggacctttccttgtaaaaaaaaaaaaacaaacctcgcttcaacactttgcccattcattgccagtaatggcaatatccgaattccaattcaggaaatctcagcaatcaaggccacttcacatgtgaaacttaaaaatctgtttgtatttgattaaatgcagtgtatgttccatcatgttacattggagaaacgtgtccaaaaataagaaaccgcatacaatggacaccgccagaccatcaacagcaaaaaatgtttgtaccagtaggtgaacactacaataaagtggacattgttgATATTCTG---ATTCTA-TTTCAT-ACTTTGTT-AT----TTGCTATCA-TTTA-C-AATGTCAACCAATCTTGAATCAT-G-AATAAATCACAAACTC---TTTACTGGTGTT--TTCCTTT-----GGAT-GTGTTGACCA--T-AGTTCAGGAATAAAC-----GAAGCCTGGGTTGAAT-----TTTACTAGAGCCAGTCGATCACCAGAGTTACTGCCCCTGAAATACTGGTTCCAGT
gi|11 : catctctgttgccaagctctctCG---C--GA-CAACAAGCGTCTAGT-TTAA-AT----TATACTTC--TACTGTGATAATTTGGAAA-TATATTTTGTT-A-ATTGGT-ATCAACTTGACA-----------------AATAAATCT---ATTAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCAT-TTTGAACTTGGGGTAAATTTAAATTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTTGTTCCCGtacaat
gi|16 : t--TTGAA---GT-GTT-ACCGTTT-ACCT-AT-AT-ATCAACAC-GTGC--AGT-CAATACCACAACCCTTGG---GCTCTA-ATTG--TTTGTATAAACATCGTGCATATGTA-TAAT--C--TTGTGAACTT-GATATT--TTCA-GACC--TG---TGAAGACTCACTAGGG-
gi|18 : aacggtAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-ATGT--ACCA--TAAGTCTA-GAATCACCATAT--GAACTTGGGGTAAA------TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTG
gi|2 : -----G---TAT-A------------AA-TT--GCG----------TC-CT---ACGTTACCA---AAATGT-TAC-CT--C--TT-GAAGCC-T--G-CTAATCC----TA----------------C---------TTA---------ATGTCTTAATGTTGTATCAAACATTCTCG-TGAATCTA-CATCTCACCTATGCTAAA-ATG--TTGGAG-T-T-GTT-ACCCATT-ACAT-ACAAC-AT--GCACTTTGAAGAGCACA-CACCACCA-CCTTGCATGGCTCTACATTGATCT-ATATAAACAACGTGCATATGTACTACT--TTATTATGAACAT-GAT-TTGCTTCACGACCAGTGATCTGAAGACCCGCTAGGG-TCGTAAAGGTATGTCTC-GGAAGATAAACTTATCGTTGAACCAAAAA-GAGTGGTGT------TATC-TTTCATTATTCATTTC--CAAGTT------A-CCG---CCGAATCAACA--CGGC-A-T--TGAGATAA
gi|20 : gttttgagtcaaatgcgaggtaatgtttcatatgcactaagtcgcacatgaaagaataaaaactagttggcttaaaatgatagctcagacgacattcaatggacgagtaactcgcaatacctcaaccagaagctgttttgactgctgatagttgacactggaataaagtaggacagcttcttgttgacaattaattatgggcgtaatcaaacagtgaagacctaatattcgtgacaattatagtcaaaaaatgcaacgcaaagaactggatctgaccaaacttagagttctacaaaattaagccatgacgctgataatagattttcatacgattctttagagcactattgtaatttaaacct-----G---TAT-A------------AA-TT--GC-----------TC-CT---AT-TTAGCA---ATACATGTAC-CTGAT--TT-GAAGCC-TATG-CTAATCC----TA----------------C---------TTA---------AT-------Tacgctttaccattaataattcattgacctacgtgtattttgtcttttagatgcaaatgtgttatcataaatattttgtcaaacttcaa
gi|23 : attacaactTTACT-----T--TTA---T-----AAAG-ATGTTGACCA--T-AGTCTAAGAATCACCATATT-GAACTTG
gi|24 : A-TCAGAATTG-ATT------GA-TAGTGT------TATC-ATTCTATATGCATTTCTCCAA
gi|3 : TACTTGTCACAATAT-GCGGGTA-TCCATA--CTACAGGACACA--ATTACC-T----GACATT-AG-AC-AAAGAACG-AT-TCACCGAACAGAAAT-TGAT---T-GCCAAATTCG-ACTGT-GCAAAAACAATGGA-CTAAA-TAGAGCAA-TCGGATTT-T-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-T--TT-GAAGCC-TAGG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-GGCGATATTA-CCTCTCACCTATGCTAAA-TT---TTGGAC-TGT-GTT-ACCCATT-ACCT-AC-ACCAT-GGCAC-TTGA--AGC-CA-CACTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACAC-GTGCATATGTA-TACT--T--TTATGAACAT-GAT-TTGCTTCA-A--C--TGA--TGAAGACC-GCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TG-TGT------TATC--TTCCATATATATTTCTTCAAGTA------AACCG---C--GATCAACA--CGGCTA-TTATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-CTTATT-A-TT-GTT-ATCAACTTGACAT-A-TTTATT-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAATCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGACTCACCATATTGAAACTTGGGGT-AAT-----TTT--CAGAACCAGT--------AGT------GCATTTGGCATACTGGTTCCCGT
gi|4 : TACTTGTCACAA-AT-GCGGGTA-TCCATAACTTACAG---ACA--ATTACC-T----GACATTTAG-AC-AAAGAA-G-AGGTCACCGAAC-AAAAT-TGAT---TTGCCAAATTCGGACTGCCA--AAAACAA--GA-CTAAAATAGAGACA-TCGGATTT-T-GC-CTA-----A---C-----T-T-TA-----G---TGTTA------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TTTGAAAGC-TAGGGCTAATCC----TA----------------C---------TTA---------AT--------GTTGTAT-AAA--TTCT-G-CGA-TTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGTTGTT-ACCCAT--ACCT-AC-AC-AT-G-CAC-T-GA--AGC-CA-C-CTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACACCGTGCATATGT--TATTACT--TTATGAACATAGAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGGTTCGT-AAGCTA-GTCTCAGGAA-AT-AA-TTATA-TTG-ATCAAAAA-GA-TGGTG-------TATCTTTTCCATATATATT--CTCAAGTTGACTACG-CCG---A--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTCATTACTGTGATATTTTGGAAA-TATA--TTATTAA-TTTGTTCATCAACTTGACAT-ATTTTATCTCCTGTTAACAAATCT---ATTATGTTAATTTATCA-ACTCTCAAACTTATA-----TGATTG---TGAGTGAAAGCGTGTTAGCGAGGT-GGT-TAGGACTCAC
gi|5 : tggaaTTGTGACAATAT-GCTGGTA-TCCATA--ATACAGGG-ACT--ATTACC-TAGCTGACATT-AG-AC-AAAGAA-G-AG-TCAATGAACGAAAAC-TGAT---T-GCCAAATTTG-ACTGT-G--AAAACAATGGA-CTAAA-TAGAGACA-TTGGATTTCT-GG-CTATTAGTA---------TAT-TA-----GAACTGT-A------------TA-TTTTGT-----------TC-AT---AT-TTACCA---ATAAATGTTC-ATG-CA-TT-GAAGCC-TTTG-CTACTCG----TA----------------C---------TTAATTTTCTTAAT-------TGTTGTAT-AAACATTCT-G-CACATTTA-CCTCTCACCTATGCTAAA-CTA--TTGGAC-TGT-ATT-ACCAAGT-ACCT-AC-AG-AT-GGCAC-TTGA--AGC-CA-TACCACAGCCCTTAGATAGCTCTA-ATTG--TT-GTACAAACATCGTGTATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTTA-GACA--TGA--TGAAGACCGGCTAGGG-TCAT-AAACTA-GTCTC-TGAA-ATAAA-TTATAGTTG-ATCATAAA-GA-TGGTGT------TATC-ATTCTATATGCATTTCTTCAAGTA------A-CCGTGAC--GATCAACA--CGGCTA-T-ATGA-AAAGCGT
gi|6 : ctacaacaaaagtggacattg-----A---C-----TAT-TA-----G---T---A------------CA-TT--GCAATTTTAATTTTC-CTTTTAT-TTACCAGGTATACATGTAC-ATG-CACTT-GAAACC-TATG-CTAATCC----TATTTTCTGGGATGTTGGC---------TTC---------AT-------TATTGTGT-AAATTTTCT-G-CAAAATTT-CCTCTCATCTGTCCTAAA-ATG--TTGGAC-TGT-GTT-ACCATTT-ACCT-AC-AT-AG-GGCAC-TTGA--AAC-CAATACCACAGCCCATAGATGGTTCTA-ATTG--TT-GTACAGACACCGTGCATATGTA-TATT--C--TTGTGAAAAT-GAT-TTACTTTA-GAAT--TGA--CGAATACCAGCTAGGG-TTGT-AGGCTA-GTCTCTGTAA-ATAAA-TAGCAGTTT-ATCATAAA-GA-TGGTGT------TATC-ATTTTATGTGCATgctgacggttcatcttgtataaatgttttttattaaaattttgaaaaatgacaaaatgtaatttgtaatttaattaatacttta
gi|7 : ttagttattcA-TCACACTTCT-AAACTA---------C-----TAT-TA-----G---TGT-ATTACAACTGTATAACTT--GC-----------TC-CT---AT-TTACCA---ATACATGTA---------------GCC-TAGG-CTAATCC----TA----------------C---------TTAATTGTCTTAAT-------TGTTGTAT-AAACATTCT-G-CAAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAAGT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCTTTAGATGGCTCTA-ATTG--TT-ATACAAGCACCATGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCAT-AACCTA-ATCTC-GGAA-ATAAA-TTATAGATG-ATCAAAAA-GA-TGGTGT------TATC-TTTCCATATATATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAAC----ACTTC--TAattgttttcatactcacgctgatttctcttccaaaccaggaagttaacggtacttcctatgagcactatgagaacagacactacaacactgataataatggtcatgttgtcatccgtagaacttgtaggacacgacgataacgcctctgcaaataaaggtaataaactctatcagtgata
gi|8 : AGAGTCA-TTGGATTTCT-GG-CTA-----A---C-----TAT-TG-----G---TGT-ATTACAACTGTATAA-TTT-GC-----------TC-CT---AT-TTACCA---ATACAGGTAC-CTG-C--TTTGAAGCC-TATG-CTAGTCCAACTTAATTGT-----------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-G-CAAATTTA-CCTCTCACCTATGCTACA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AA-TGCAT-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGAT-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-AACC--TGA--TGAAGACCCGCCAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAATTG-ATCAAAAATTA-TGGTGG------CATC-TTTCCATA-ATATTTCTTCAAGTT------A-CCA---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTTTACTAA--GA-TGTGATAaacaatcaatatgaaattcatacatactaaaaacccatgaagattgtaatatactt
gi|9 : TTGTGACAAAA--GCGGGTA-TC-ATA--C-ACAGGG-ACATAATTACC-T----GACATT-AGAACAAAAGAA-GAAG-TCagctacatatgacatccaatatt
blockSeqs : T T . AC C TA . AGCT T A A C A G C A . TT G T TGCA T . A C . C . A TTAGTA . . AAC T TTACAACTGTAT C TT AATTTTAATTT . TTT G GGT C CAC T . T G AACT TTTTCTGGGATGTTGGCTTC GTCTTAA C C G . . . . T . . . A C CA T AG A A C AT T C TTA A A C AG TC C T A T A G C A T G . TT GACTACG TGAC . . TA G G A AT C G T TT AA T C C TATTTTATCTCC . G G AAA TGA TGAGTG C GG A C G ATTG A TTTAAA . AGA
blockSeqs : T T . . . . . . . . . . . . C G . T . T CCA T . . A . C . . AC . . . . TTACAACTGTAT . T G . . . . C AT T . G . . CTTAATTTTCTTA . . . . . . . . . . . . . . G . . . A . . . . ACT . . . . . C . . . T . . . . . . T AA CCG . . A . G A . C G . C A T . C TATTTATTCC . . G . T T . . . C A TTT A T . AGA
blockSeqs : A T . . . . . . . . . . . . A . . T . T TG . . . A . C . . AC . . . . . . . . . . . . C CA . . G . . CTTAATTGTCTTA . . . . . . . . . . . . . . G . . . . . . . . C . . . . . C . . . . . . . . . . A A C . . A . G T . . G . . A . . C . . . A . T T . . . C G ATT . . . AGT
blockSeqs : . . . . . . . . . . . . . . T . . . . AC . . . . . . . . . . . . C C . . T . . ATTGTCTTA . . . . . . . . . . . . . . G . . . . . . . . T . . . . . G . . . . . . . . . . A A A . . A . G . . . C . T T . . . C G AT
blockSeqs : . . . . AC . . . . . . . . . . . . A T . . T . . CTTA . . . . . . . . . . . . . . G . . . . . . . . T . . . . . A . . . . . . . . . . A A C . . A . . T T . . . . .
blockSeqs : C . . . . . . . . . . . . A C . . G . . CTTA . . . . . . . . . . . . . . G . . . . . . . . C . . . . . C . . . . . . . . . . T C . . . .
blockSeqs : . . . . . . . . . . . C C . . T . . CTTA . . . . . . . . . . . . . . T . . . . . . . . T . . . . . C . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . CTTA . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . .
blockSeqCons : T* AC************* ***** *********** C* C*** CTTATTCTTA**************************** ** ****** ** T******* T******** ATT*
originalCons : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCC----TA----------------C---------TTA---------AT-------TGTTGTAT-AAACATTCT-G-CGAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTGGAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
finalCons : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTAAC-------------TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTACC-TGC---TT-GAAGCC-TANG-CTAATCC----TACTTATTCTTA----------------------------AT-------TGTTGTAT-AAACATTCT-G-CGAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACTT-------TTAT--------AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATT-GAACTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAATTTCAATGCAGTCATATCTTCACTGTACACTGGAGAAACGTTCGCCTAAAAAAAATAAGAACCGCATCAATGGACACCTCCTAACCATTTAAACAGCAAAAAATGTTGTTTGTACCAGTAGGTGAACACTAAACAAAACGACATGTTGTGACATATCTCCAAAATAATTCTCACTCAAAACAAAACA
Unaligned ( gi|13 ): CGTATTCTTTTATACTCACGCTGATTTCTTTTCCAAATCAGGAGGTTTACAGCACTTCCAATGAGCACTATGAGAACAGATACTACAATGCTCAGGATAATGGCGATGTTGTCATCCGTAGAACTTGTATTGCACGATGATAACGAATCTGGAATATCAGGAAATAAACAGTACCAAGCAATG
Unaligned ( gi|14 ): TCTTATTTTACTAGTAGAGTTGATCGATGTTTTAATAGCAAAAACTTGTCACCCATTAAGGAATACTTTCATGTTATAATTTTTTGCAATTTATAATTATCATTAATGATTTATTCATAAAGGCAATTTCTTAATGTGAATCCTATGTCTTTATTCTTTTAAAAAAATATT
Unaligned ( gi|15 ): AAATCAGGAAGTTTACGACACTCCCAATGAGCACTATGAGAACAGACACTACAACACTGATAATAATGGCGATGTTGTCATCCGTAGAACATGTAGGGCACGATGATATCGCCTCTGTAAATAAAGGAACGAATGCAATCAATGAT
Unaligned ( gi|17 ): TATCTCTCTTGTTGCAAATCGTTTCTTACACTGGTATCTTCTCCACAACAGGATGTTTATGATACTTCCGATAAGAACAATGATAAAAGACGCTACAATGCTGATGATCATCGCCATGGTGTTGTCA
Unaligned ( gi|19 ): TTTACGGGTCATAATTATGACGTTTACCGGTAATTCAAGACATGCATAATTGTAACGTTTGCCGGTAATTCAAGACATACATTA
Unaligned ( gi|21 ): CCAGACCATCAACAGCAAAAATGTGTTAGTACCAGTAGGGGAACACTACAACAGAAGTGGTCATTGAGTG
Unaligned ( gi|22 ): GACACCGCCAGACCATCAACAGCAAAAATGTATTTGTACCAGTAGGTGAACACTACAACATGTGACAATA
Unaligned ( gi|25 ): CANNNNNNNNNNNNNNNNNNNNNNNNNCACTGGTTCCCGTTAC
Alignments
lowQualScore : 11 11 1111 1 1 11111 1 22222 1 1 333333333333333 11111 444444444444 11 33333333333 1111 66666666666666666 1 111111 11111111 111111 11 1 11 111 1 3333333333333 111 111 11111111 111111111 222222 11 44444444444444444
lowQualScore : 6 88 8 0 11 0 8 11 0 8 7777 8 8 8 8 8 8 1 0 0 88888 0 3 66666 3 0 5 1 6 6 6 6 333333333333333 5 11111 777 0 4 555555555555 4 00 00000000000 4 777 8 777 44 5555 8 4 2 4 66666666666666666 3 5 5 5 0 5 5 66 4 4 4 0 4 4 8 4 44 4 66 4 8 4 66 4 4 88888 4 4 4 66 66 1 4 0 5 5 0 5 4 4 4 4 222222 99 0 99999999 111111 77 5 77 5 2 1 11 2 2 5 77 0 111 3 0 2 2222222222222 0 777 8 0 1 444 66666666 999999999 6 99 6 1 1 0 66 8 8 7 888888 33 33333333333333333
lowQualScore : . .. . . .. . . .. . . .... . . . . . . . . . ..... . . ..... . . . . . . . . ............... . ..... ... . . ............ . .. ........... . ... . ... .. .... . . . . ................. . . . . . . . .. . . . . . . . . .. . .. . . . .. . . ..... . . . .. .. . . . . . . . . . . . ...... .. . ........ ...... .. . .. . . . .. . . . .. . ... . . . ............. . ... . . . ... ........ ......... . .. . . . . .. . . . ...... .. .................
lowQualScore : 0 88 0 8 00 8 0 00 8 0 0000 0 0 0 0 0 0 0 5 0 55555 0 2 00000 2 0 5 0 7 7 7 7 777777777777777 7 11111 888 9 4 666666666666 4 66 00000000000 4 888 9 888 66 8888 9 4 6 4 55555555555555555 2 0 0 0 4 0 0 11 4 4 4 7 4 4 9 4 66 4 11 4 9 4 11 4 4 22222 4 4 4 11 11 1 4 2 0 0 0 0 4 4 4 4 888888 88 1 33333333 444444 99 7 44 7 5 0 00 5 5 5 00 8 000 2 0 5 8888888888888 8 555 0 8 4 000 88888888 333333333 7 22 7 0 0 8 66 0 0 0 222222 88 55555555555555555
consensus : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCCTACTT--------AAT-TGT--CTTAATTGTTGTAT-AAACATTCT-G-CGAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTG-AA-CTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
Reference ( family-1357 ) : TACTTGTGACAATAT-GCGGGTA-TCCATA--CTACAGGG-ACA--ATTACC-T----GACATT-AG-AC-AAAGAA-G-AG-TCANCGAACGAAAAC-TGAT---T-GCCAAATTCG-ACTGC-G--AAAACAATGGA-CTAAAATAGAGACA-TCGGATTTCT-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TT-GAAGCC-TANG-CTAATCCTACTT--------A---T-T--CTTAATTGTTGTAT-AAACATTCT-G-CGAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TGGTGT------TATC-NTTCCATATGCATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-TTTATT-A-TTTGTT-ATCAACTTGACAT-A-TTTATC-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAGTCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATATTG-AA-CTTGGGGTAAAT-----TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTGGTTCCCGT
gi|1 : GTGACAATATCGCGGGTAATCCA-A--CTACAGGG-ACA--AT-ATCAT----GTCATT-AG-AC-AAAGAA-G-AG-TCAGTGAACAAAAACGCGATACTT-GCCAAATTTG-AC--A-A--AAAACAATGGAACTAAAATAGAGACAATCGGATTTCTTGG-CTA-----AACTCAAGTATATGTACAACTG---TAT-A------------AT-TT--GCC----------TCACT---ATCTTACCA---ATACATGTACATTG-CA-TT-GAAGCCCTAAG-CTAATCCTACCT--------AAT-TGT--CTTAATTGTTGTAT-AAACACTCT-G-CAAATTTAACCTCTCACCTATGCTAACCTTGCCTTGGACCTGT-GTTTACCAATTTACCTCACCAC-AT-GGCAC-TTGA--AGC-CA-CACCAAAACCCTTAGAGGGCTCTA-ATTG--T----ACAAACACCGTGCATATGTA-TACT--C--TTGTGAACAT-GAT-TTGCTTTA-GACC--TGA--TGAAGACCCACTAGGG-TC-T---------------GAA-ATAAA-TTAAAGTCA-ATCAAAAA-GA-TAGTGTTACATGTATC-ATTCCATATGCATTTC
gi|10 : ttcaccctccccacactaaaagtgctataaaaatacagccaagccctaagataacacatactcaactcagatagcaccactcgtagcatgaccaactccaagaacctgaccatatgcattccagcatctctgatataaccaccgattaattaacaaccagttggaataaggctaagaccaaaccactggaactcattactgcagtaacaacacagcagagacatgaaggtgacaggatactccgtctgtattaacctatcacccaggattaaggccctatcaaacgcctatgccaaggaaatacaatatgttatccgaaggacgaaaattaaaggaactattccctaaacctcccgtcattgcttaccagcaaccttctaatatccaaaagttatgctggtacatagtgaacttgcgcctgcatgccaagagggacctttccttgtaaaaaaaaaaaaacaaacctcgcttcaacactttgcccattcattgccagtaatggcaatatccgaattccaattcaggaaatctcagcaatcaaggccacttcacatgtgaaacttaaaaatctgtttgtatttgattaaatgcagtgtatgttccatcatgttacattggagaaacgtgtccaaaaataagaaaccgcatacaatggacaccgccagaccatcaacagcaaaaaatgtttgtaccagtaggtgaacactacaataaagtggacattgttgATATTCTG---ATTCTA-TTTCAT-ACTTTGTT-AT----TTGCTATCA-TTTA-C-AATGTCAACCAATCTTGAATCAT-G-AATAAATCACAAACTC---TTTACTGGTGTT--TTCCTTT-----GGAT-GTGTTGACCA--T-AGTTCAGGAATAAAC-----G-AAGCCTGGGTTGAAT-----TTTACTAGAGCCAGTCGATCACCAGAGTTACTGCCCCTGAAATACTGGTTCCAGT
gi|11 : catctctgttgccaagctctctCG---C--GA-CAACAAGCGTCTAGT-TTAA-AT----TATACTTC--TACTGTGATAATTTGGAAA-TATATTTTGTT-A-ATTGGT-ATCAACTTGACA-----------------AATAAATCT---ATTAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGAATCACCATTTTG-AA-CTTGGGGTAAATTTAAATTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTTGTTCCCGtacaat
gi|16 : t--TTGAA---GT-GTT-ACCGTTT-ACCT-AT-AT-ATCAACAC-GTGC--AGT-CAATACCACAACCCTTGG---GCTCTA-ATTG--TTTGTATAAACATCGTGCATATGTA-TAAT--C--TTGTGAACTT-GATATT--TTCA-GACC--TG---TGAAGACTCACTAGGG-
gi|18 : aacggtAT-TTAATTTATCACAGTCTT---CTTACT-----T--TTA---T-----AAAG-ATGT--ACCA--TAAGTCTA-GAATCACCATA-TG-AA-CTTGGGGTAAA------TTT--CAGAACCAGT--------AGA------GCCTTTGGCATACTG
gi|2 : -----G---TAT-A------------AA-TT--GCG----------TC-CT---ACGTTACCA---AAATGT-TAC-CT--C--TT-GAAGCC-T--G-CTAATCCTACTT--------AA--TGT--CTTAAT-GTTGTATCAAACATTCTCG-TGAATCTA-CATCTCACCTATGCTAAA-ATG--TTGGAG-T-T-GTT-ACCCATT-ACAT-ACAAC-AT--GCACTTTGAAGAGCACA-CACCACCA-CCTTGCATGGCTCTACATTGATCT-ATATAAACAACGTGCATATGTACTACT--TTATTATGAACAT-GAT-TTGCTTCACGACCAGTGATCTGAAGACCCGCTAGGG-TCGTAAAGGTATGTCTC-GGAAGATAAACTTATCGTTGAACCAAAAA-GAGTGGTGT------TATC-TTTCATTATTCATTTC--CAAGTT------A-CCG---CCGAATCAACA--CGGC-A-T--TGAGATAA
gi|20 : gttttgagtcaaatgcgaggtaatgtttcatatgcactaagtcgcacatgaaagaataaaaactagttggcttaaaatgatagctcagacgacattcaatggacgagtaactcgcaatacctcaaccagaagctgttttgactgctgatagttgacactggaataaagtaggacagcttcttgttgacaattaattatgggcgtaatcaaacagtgaagacctaatattcgtgacaattatagtcaaaaaatgcaacgcaaagaactggatctgaccaaacttagagttctacaaaattaagccatgacgctgataatagattttcatacgattctttagagcactattgtaatttaaacct-----G---TAT-A------------AA-TT--GC-----------TC-CT---AT-TTAGCA---ATACATGTAC-CTGAT--TT-GAAGCC-TATG-CTAATCCTACTT--------A---acgctttaccattaataattcattgacctacgtgtattttgtcttttagatgcaaatgtgttatcataaatattttgtcaaacttcaa
gi|23 : attacaactTTACT-----T--TTA---T-----AAAG-ATGTTGACCA--T-AGTCTAAGAATCACCATATTG-AA-CTTGatt
gi|24 : A-TCAGAATTG-ATT------GA-TAGTGT------TATC-ATTCTATATGCATTTCTCCAA
gi|3 : TACTTGTCACAATAT-GCGGGTA-TCCATA--CTACAGGACACA--ATTACC-T----GACATT-AG-AC-AAAGAACG-AT-TCACCGAACAGAAAT-TGAT---T-GCCAAATTCG-ACTGT-GCAAAAACAATGGA-CTAAA-TAGAGCAA-TCGGATTT-T-GG-CTA-----A---C-----TAT-TA-----G---TGT-A------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-T--TT-GAAGCC-TAGG-CTAATCCTACTT--------A------------ATTGTTGTAT-AAACATTCT-GGCGATATTA-CCTCTCACCTATGCTAAA-TT---TTGGAC-TGT-GTT-ACCCATT-ACCT-AC-ACCAT-GGCAC-TTGA--AGC-CA-CACTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACAC-GTGCATATGTA-TACT--T--TTATGAACAT-GAT-TTGCTTCA-A--C--TGA--TGAAGACC-GCTAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAGTTG-ATCAAAAA-GA-TG-TGT------TATC--TTCCATATATATTTCTTCAAGTA------AACCG---C--GATCAACA--CGGCTA-TTATGA-ATAACGTATACTTC--TACTGTGATATTTTGGAAATTATA-CTTATT-A-TT-GTT-ATCAACTTGACAT-A-TTTATT-CCTGTTAACAAATCT---ATTAT-TTAATTTATCACAATCTC---CTTACT-----T--TTA---T-----AAAG-GTGTTGACCA--T-AGTCTAGGACTCACCATATTGAAA-CTTGGGGT-AAT-----TTT--CAGAACCAGT--------AGT------GCATTTGGCATACTGGTTCCCGT
gi|4 : TACTTGTCACAA-AT-GCGGGTA-TCCATAACTTACAG---ACA--ATTACC-T----GACATTTAG-AC-AAAGAA-G-AGGTCACCGAAC-AAAAT-TGAT---TTGCCAAATTCGGACTGCCA--AAAACAA--GA-CTAAAATAGAGACA-TCGGATTT-T-GC-CTA-----A---C-----T-T-TA-----G---TGTTA------------AA-TT--GC-----------TC-CT---AT-TTACCA---ATACATGTAC-CTG-C--TTTGAAAGC-TAGGGCTAATCCTACTT--------A------------AT-GTTGTAT-AAA--TTCT-G-CGA-TTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGTTGTT-ACCCAT--ACCT-AC-AC-AT-G-CAC-T-GA--AGC-CA-C-CTACAACCCTTAGATGGCTCTA-ATTG--TT-ATATAAACACCGTGCATATGT--TATTACT--TTATGAACATAGAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGGTTCGT-AAGCTA-GTCTCAGGAA-AT-AA-TTATA-TTG-ATCAAAAA-GA-TGGTG-------TATCTTTTCCATATATATT--CTCAAGTTGACTACG-CCG---A--GATCAACA--CGGCTA-T-ATGA-ATAACGTATACTTCATTACTGTGATATTTTGGAAA-TATA--TTATTAA-TTTGTTCATCAACTTGACAT-ATTTTATCTCCTGTTAACAAATCT---ATTATGTTAATTTATCA-ACTCTCAAACTTATA-----TGATTG---TGAGTGAAAGCGTGTTAGCGAGGT-GGT-TAGGACTCAC
gi|5 : tggaaTTGTGACAATAT-GCTGGTA-TCCATA--ATACAGGG-ACT--ATTACC-TAGCTGACATT-AG-AC-AAAGAA-G-AG-TCAATGAACGAAAAC-TGAT---T-GCCAAATTTG-ACTGT-G--AAAACAATGGA-CTAAA-TAGAGACA-TTGGATTTCT-GG-CTATTAGTA---------TAT-TA-----GAACTGT-A------------TA-TTTTGT-----------TC-AT---AT-TTACCA---ATAAATGTTC-ATG-CA-TT-GAAGCC-TTTG-CTACTCGTACTT--------AATTT-T--CTTAATTGTTGTAT-AAACATTCT-G-CACATTTA-CCTCTCACCTATGCTAAA-CTA--TTGGAC-TGT-ATT-ACCAAGT-ACCT-AC-AG-AT-GGCAC-TTGA--AGC-CA-TACCACAGCCCTTAGATAGCTCTA-ATTG--TT-GTACAAACATCGTGTATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTTA-GACA--TGA--TGAAGACCGGCTAGGG-TCAT-AAACTA-GTCTC-TGAA-ATAAA-TTATAGTTG-ATCATAAA-GA-TGGTGT------TATC-ATTCTATATGCATTTCTTCAAGTA------A-CCGTGAC--GATCAACA--CGGCTA-T-ATGA-AAAGCGT
gi|6 : ctacaacaaaagtggacattg-----A---C-----TAT-TA-----G---T---A------------CA-TT--GCAATTTTAATTTTC-CTTTTAT-TTACCAGGTATACATGTAC-ATG-CACTT-GAAACC-TATG-CTAATCCTATTTTCTGGGATG---T-TGGCTTCATTATTGTGT-AAATTTTCT-G-CAAAATTT-CCTCTCATCTGTCCTAAA-ATG--TTGGAC-TGT-GTT-ACCATTT-ACCT-AC-AT-AG-GGCAC-TTGA--AAC-CAATACCACAGCCCATAGATGGTTCTA-ATTG--TT-GTACAGACACCGTGCATATGTA-TATT--C--TTGTGAAAAT-GAT-TTACTTTA-GAAT--TGA--CGAATACCAGCTAGGG-TTGT-AGGCTA-GTCTCTGTAA-ATAAA-TAGCAGTTT-ATCATAAA-GA-TGGTGT------TATC-ATTTTATGTGCATgctgacggttcatcttgtataaatgttttttattaaaattttgaaaaatgacaaaatgtaatttgtaatttaattaatacttta
gi|7 : ttagttattcA-TCACACTTCT-AAACTA---------C-----TAT-TA-----G---TGT-ATTACAACTGTATAACTT--GC-----------TC-CT---AT-TTACCA---ATACATGTA---------------GCC-TAGG-CTAATCCTACTT--------AAT-TGT--CTTAATTGTTGTAT-AAACATTCT-G-CAAATTTA-CCTCTCACCTATGCTAAA-TTG--TTGGAC-TGT-GTT-ACCAAGT-ACCT-AC-AC-AT-GGCAC-TTGA--AGC-CA-CACCACAACCTTTAGATGGCTCTA-ATTG--TT-ATACAAGCACCATGCATATGTA-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-GACC--TGA--TGAAGACCCGCTAGGG-TCAT-AACCTA-ATCTC-GGAA-ATAAA-TTATAGATG-ATCAAAAA-GA-TGGTGT------TATC-TTTCCATATATATTTCTTCAAGTT------A-CCG---C--GATCAACA--CGGCTA-T-ATGA-ATAAC----ACTTC--TAattgttttcatactcacgctgatttctcttccaaaccaggaagttaacggtacttcctatgagcactatgagaacagacactacaacactgataataatggtcatgttgtcatccgtagaacttgtaggacacgacgataacgcctctgcaaataaaggtaataaactctatcagtgata
gi|8 : AGAGTCA-TTGGATTTCT-GG-CTA-----A---C-----TAT-TG-----G---TGT-ATTACAACTGTATAA-TTT-GC-----------TC-CT---AT-TTACCA---ATACAGGTAC-CTG-C--TTTGAAGCC-TATG-CTAGTCCAACTT--------AAT-TGT--CTTAATTGTTGTAT-AAACATTCT-G-CAAATTTA-CCTCTCACCTATGCTACA-TTG--TTGGAC-TGT-GTT-ACCAATT-ACCT-AC-AC-AA-TGCAT-TTGA--AGC-CA-CACCACAACCCTTAGATGGCTCTA-ATTG--TT-GTACAAACACCGTGCATATGAT-TACT--T--TTGTGAACAT-GAT-TTGCTTCA-AACC--TGA--TGAAGACCCGCCAGGG-TCGT-AAGCTA-GTCTC-GGAA-ATAAA-TTATAATTG-ATCAAAAATTA-TGGTGG------CATC-TTTCCATA-ATATTTCTTCAAGTT------A-CCA---C--GATCAACA--CGGCTA-T-ATGA-ATAACGTTTACTAA--GA-TGTGATAaacaatcaatatgaaattcatacatactaaaaacccatgaagattgtaatatactt
gi|9 : TTGTGACAAAA--GCGGGTA-TC-ATA--C-ACAGGG-ACATAATTACC-T----GACATT-AGAACAAAAGAA-GAAG-TCagctacatatgacatccaatatt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAATTTCAATGCAGTCATATCTTCACTGTACACTGGAGAAACGTTCGCCTAAAAAAAATAAGAACCGCATCAATGGACACCTCCTAACCATTTAAACAGCAAAAAATGTTGTTTGTACCAGTAGGTGAACACTAAACAAAACGACATGTTGTGACATATCTCCAAAATAATTCTCACTCAAAACAAAACA
Unaligned ( gi|13 ): CGTATTCTTTTATACTCACGCTGATTTCTTTTCCAAATCAGGAGGTTTACAGCACTTCCAATGAGCACTATGAGAACAGATACTACAATGCTCAGGATAATGGCGATGTTGTCATCCGTAGAACTTGTATTGCACGATGATAACGAATCTGGAATATCAGGAAATAAACAGTACCAAGCAATG
Unaligned ( gi|14 ): TCTTATTTTACTAGTAGAGTTGATCGATGTTTTAATAGCAAAAACTTGTCACCCATTAAGGAATACTTTCATGTTATAATTTTTTGCAATTTATAATTATCATTAATGATTTATTCATAAAGGCAATTTCTTAATGTGAATCCTATGTCTTTATTCTTTTAAAAAAATATT
Unaligned ( gi|15 ): AAATCAGGAAGTTTACGACACTCCCAATGAGCACTATGAGAACAGACACTACAACACTGATAATAATGGCGATGTTGTCATCCGTAGAACATGTAGGGCACGATGATATCGCCTCTGTAAATAAAGGAACGAATGCAATCAATGAT
Unaligned ( gi|17 ): TATCTCTCTTGTTGCAAATCGTTTCTTACACTGGTATCTTCTCCACAACAGGATGTTTATGATACTTCCGATAAGAACAATGATAAAAGACGCTACAATGCTGATGATCATCGCCATGGTGTTGTCA
Unaligned ( gi|19 ): TTTACGGGTCATAATTATGACGTTTACCGGTAATTCAAGACATGCATAATTGTAACGTTTGCCGGTAATTCAAGACATACATTA
Unaligned ( gi|21 ): CCAGACCATCAACAGCAAAAATGTGTTAGTACCAGTAGGGGAACACTACAACAGAAGTGGTCATTGAGTG
Unaligned ( gi|22 ): GACACCGCCAGACCATCAACAGCAAAAATGTATTTGTACCAGTAGGTGAACACTACAACATGTGACAATA
Unaligned ( gi|25 ): CANNNNNNNNNNNNNNNNNNNNNNNNNCACTGGTTCCCGTTAC