lowQualScore                  :                                111111111                                                            1111111    1                  111111111                                                  111111    1111111111111                222222222222                      1111111            1111                                            222222222222222222            111111111111               1111     111                    111    1                                                                                                      4444444444444444444444444444444444444444444                        333333333                                                        111         111            1111            2222                               1                         111  11             1        111111111                                              2222222222222                   1                                      11           11111     111                                        1111    3333333    111            1   222222222                                                                      11                                           1             11111   11111   11111    11111         2                1                             1            11      444444444444444                            11                        111         1             
lowQualScore                  :              9 3  6    0       000000000 3 3  3  55           55      3 3 3 3 7       4  4 4   4    3333333    2  3        5  7   222222222 44    3   3 3 55 3      3  888888  3   55     3  999999 3  8888888888888 3  3 7777      999999999999        4 55     55 4 1111111      0 55  0000  77  3   2           0 2      44    3  0   666666666666666666  1 3 3 99  777777777777  555          0000   3 111  3   3 7777 3      000 44 5     55555 6   77   999    44      33 88          2   2      5        2    2      3  3      55 4  4   0000000000000000000000000000000000000000000             6   99     555555555   6     6    6   6 6        6        6     6   99 1    777     6   111          6 4444    99  6   0000           77   6  6           1             1   8       777  88             0        666666666  8    9      77   6           6 99 8   3     6666666666666      3   6        1                 8      8             00 2         88888     777           99       6  77        0  2   4444  1 0000000  0 111   6        0   666666666 0  77    5        5    5 888    1        5    1 5 5         99     5 55      5   4    888   5  888   3    66   66 0 3  4        44444   22222   22222    33333    4    1 5              5        2          5    5    0            99      999999999999999         5        5  5   5  77   5      99       77   555    5    1    44    4  
lowQualScore                  :              . .  .    .       ......... . .  .  ..           ..      . . . . .       .  . .   .    .......    .  .        .  .   ......... ..    .   . . .. .      .  ......  .   ..     .  ...... .  ............. .  . ....      ............        . ..     .. . .......      . ..  ....  ..  .   .           . .      ..    .  .   ..................  . . . ..  ............  ...          ....   . ...  .   . .... .      ... .. .     ..... .   ..   ...    ..      .. ..          .   .      .        .    .      .  .      .. .  .   ...........................................             .   ..     .........   .     .    .   . .        .        .     .   .. .    ...     .   ...          . ....    ..  .   ....           ..   .  .           .             .   .       ...  ..             .        .........  .    .      ..   .           . .. .   .     .............      .   .        .                 .      .             .. .         .....     ...           ..       .  ..        .  .   ....  . .......  . ...   .        .   ......... .  ..    .        .    . ...    .        .    . . .         ..     . ..      .   .    ...   .  ...   .    ..   .. . .  .        .....   .....   .....    .....    .    . .              .        .          .    .    .            ..      ...............         .        .  .   .  ..   .      ..       ..   ...    .    .    ..    .  
lowQualScore                  :              4 6  3    3       777777777 6 6  6  00           00      3 6 6 6 3       0  0 0   0    0000000    3  6        4  8   888888888 77    6   6 6 00 6      6  777777  6   00     6  000000 3  3333333333333 3  3 1111      000000000000        0 55     00 3 8888888      4 00  4444  33  1   9           6 5      66    3  5   111111111111111111  4 3 3 22  111111111111  888          4444   6 444  6   6 7777 3      888 66 0     22222 7   99   222    66      99 77          7   7      3        7    7      6  6      55 0  0   2222222222222222222222222222222222222222222             7   22     333333333   7     7    7   7 7        7        7     7   22 7    888     7   777          7 7777    22  7   8888           33   7  7           8             4   0       555  22             5        666666666  0    8      77   7           7 22 3   3     3333333333333      2   7        0                 0      0             55 0         55555     555           22       7  77        8  8   2222  0 3333333  7 777   7        8   777777777 7  99    7        7    0 888    4        0    4 0 0         00     0 44      0   3    888   0  888   4    99   99 0 0  0        88888   55555   55555    11111    6    2 0              0        5          0    0    0            11      000000000000000         1        7  7   7  33   7      77       44   777    7    4    22    0  
consensus                     :  AACATTACCAAANT-TGGTAATTTTTGTTG----TT-CCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-ATTGCAA-AA-A-GTG-GGAG-------ATCATTT-GTCTATGGCATGAAT-TTC----AT-GTATA-TAA-A-G--A-AGCGCA-TTGT----AC-TGA--AAATT-TAG-----T-TC-------------C-AC-A----CAGCTG------------CGTCTTGA-G--AAGGG--ANG-------TGAAAAGG--GA----GG--CT-GTC-TTGCAAGTAGAATGTTACAA--TGGA-CTAAAC---CA-------------CTAA-C-A--AT------------AT---TTCATTTCCA----TTC-A---GT-TTA-A----A-GTGAAA--CA--T-TTGGT--T--A-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAGGAAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-TG--ATC-------AT-----C-ATT-----T-----TCGGAACGGACAA-TTT--ACTAC--G------GTA-GCCGG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATG-GCA--TTGATG-TATGTAA-TAA---TTTGCTTTCC-A---NATGC--AG-TTA----CTTTTCCCTAT-TATC-AA-GAAAACACATAAGGAATAGAATGCCATCG-GATTTTA---TAAGGGGTAATATCTCATGCGTAACTT---AT---GC-AATACGAATAAGCTTA-TGTACGACCTG-T--TTAATAAAACAGCAT--ACATATATATTTTTAGC-ACGATATAGCTTCCGTACAAACATTG-CAAATT-GGCATGATCTTTT-NCTCTTTCTGAT--T--AGCTA---GTGCTTTACCG--GATGCAA-CAG-TTGATAAAAGATGGA----AGCA---G---AGTC---AAG-TCAAGTTTAGAT-------G-TAAC--ATTT-AAAGTCTC-TTGA-A---CTGGGCAAGTTTA-AGTAGT-A-TCAAAGAAA-NTCCTT-CGGTCAAAAAGGTGTCAG---TAC-AT---ACAGCCTG--AAA--T-ANATNCTTCATTTTC--NTAA-----ATA-----TGCA----GCAGCGAACATT-ATGGAATATTACTGAAAATGAAAGTGTACATGTT-AAGT-AATT-AAAACATGGCCCGACATTCTT-C--C---T-----TATCTCTAATAACAAATA-CC-ATT-AA-GATG-CAAGGGN-AAACTGCG-GAA--NATTC-GCCG-TATTTGGTAANTG
Reference ( gi|3 )            :  AACATTACCAAAAT-TGATAATTTTTGTTG----TT-CTA-T-AT-GA--ACAAGAATGGA--AATCTCAT-G-A-T-ATTGCAA-AA-A-GTG-GGAA-------ATCAATT-GTCTATGGTATTAAT-TTC----AT-GTATA-TAA-A-G--A-AGCGCA-TTTT----AC-TGA--AAATT-TAT-----T-TC-------------C-AC-A----CAGCTG------------CGTCTTGA-G--AAGGG--AAG-------TGAAAAGG--GA----GG--CT-GTC-TTGCAAGTAGAATGTTACAA--TGGA-CTAAAC---CA-------------CTGA-C-A--AT------------AT---TTCATTTCCA----TTC-A---GT-TTA-A----A-GTGAAA--AA--TGTTGGT--T--A-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAGGAAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-TG--ATC-------AT-----C-ATT-----T-----TCGGAACGGACAA-TTT--ACTAC--T------GTA-GCCAG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATG-GCA--TTGATGATATGTAA-TAA---TTTGCTTTCC-A---TATGC--AG-TTA----TTTTTCCCTAT-CATC-AA-GAAAACACATATGGAATAGAATGCCATCG-GATTTTA---TAATGGGTAATATCTCAAGCATAACTT---AT---GC-AATAAGAATAAGCTTA-TGTACGACCTG-T--TAAATGAAACAGCAT--ACATATATATTTTTAGC-ACGATATATCTTCCGTACAAACATTG-CAAATT-GGCATGATCTTTT-CCCTTTTCTGAT--T--AACTA---GTGCTTTACCA--GATGCAA-CAA-TTGATAAAAGACGGA----AGCA---T---AGCC---AAG-TCAAGTTTCGAT-------G-TGAC--ATTT-AAAGTTTC-TTGA-A---CTGGGCAAGTTTA-AGTAGT-A-TCAAAGAAA-TTCCTT-CATTCAAAAAGGTGTCAG---TAC-AT---ACAGCCTG--AAA--T-AAATTCTTCATTTTC--TTAA-----ATA-----TGCA----GCAGCAAACAGT-ATGGAATATTACTGCAAATGAAAGTGTACATGTT-AAGT-AATT-AAAACATGGCCCTGCATTCT-----C---T-----TATCTCTAACAACAAATA-CC-ATT-AA-TATG-CAAGGGG-AAACTGCA-GAA--CATTC-GCCG-TATTTGGTAAATG
gi|2                          :  AACATTACCAAAAT-TGATAATTTTTGTTG----TT-CTA-T-AT-GA--ACAAGAATGGA--A-TCTCAT-G-A-T-ATTGCAA-AA-AAGTG-GGAA-------ATCAATT-GTCTATGGTATTAAT-TTC----AT-GTATA-TAA---G--A-AGCGCA-TTTT----AC-TGA--AAATT--AT-----T-TC-------------CCACCA----CAGCTG------------CGTCTTGA-G--AAGGG--AAG-------TGAAAAGG--GA----GG--CT-GTC-TTGCAAGTAGAATGTTACAA--TGGAACTAAAC---CA-------------CTGA-C-A--AT------------AT---TTCATTTCCA----TTC-A---GT-TTA-A----AAGTGAAA--AA--TGTTGGT--TTTA-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAGGAAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-TG--ATC-------AT-----CAATT-----T-----TCGGAACGGACAA-TTT--ACTAC--T------G-A-GCCAG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATG-GCA--TTGATGATATGTAA-TAA---TTTGCTTTCC-A---TATGC--AG-TTA----TTTTTCCCTAT-CATC-AA-GAAAACACATATGGAATAGAATGCCATCG-GATTTTA---TA--GGGTAATATCTCAAGCATAACTT---AT---GCAAATAAGAATAAGCTTATTGTACGACCTGTT--TAAATGAACCAGCAT--ACATATATATTTTTAGC-ACGATATATCTTCCGTACAAACATTG-CAAATT-GGCATGATCTTTT-CCTTTTTCTGAT--T--AACTA---GTGCTTTACCA--GATGCAA-CAATTTGATAAAAGACGGA----AGCA---T---AGCC---AAG-TCAAGTTTCGAT---------TGAC--ATTT-AAAGTTTC-TTGA-A---CTGGGCAAGTTTA-AGTAGT-A-TCAAAGAAA-TTCCTT-CATTC-AAAAGGTGTCAG---TAC-AT---ACAGCCTG--AAA--T-AAATTCTTCATTTTT--CTTA-----ATA-----TGCA----GCAGCAAACAGTAATGGAATATTACTGCAAATGAAAGTGTACATGTT-AAGT-AATTAAAAACATGGCCCTGCATTCT-----C---T-----TATCTCTAACAACAAATA-CC-ATT-AA-TATG-CAA-GGG-AAACTGCA-GAA--CATTC-GCCGTTATTTGGTAAA
gi|1                          :  AACATTACCAAA-----------TTCG--G----T----A-T-AT-GA--ACAAGAATGGA--AATCTCAT-G-A-TTATTGCAA-AA-A-GTG-GGAG-------TTCATTT-GTTTCTGGCATGAAT-TTC----CT-CTATA-TAA-A-G--A-AGTGCA-TTGT----AC-TGA--AAATT-TAG-----T-TC-------------C-AC-A----CAGCTATTAACACAGCTTCGTTTTGA-G--AAGGG--ACG-------TGAAAAGG--GA----GG--CT-GTC-TTGCAAGTAGAATGTTACAA--TGGA-CT-----------------------TGA-C-----T------------AT-----CATTTCCA----TT------AT-TTA-ACTATA-CTGAAA--CA--TTTTGGT--T--A-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-TGT-CAGTGC-AAGGAAGT-AAAG-CTCACG-TG-CTACAA--T-AA-ACA----A-AC--ATT--------T-----G-ATC-----T-----TTGGAATGGATAA-TTT--ACTAC--G------GTA-GCCAG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATG-GCA--T---TGATACGTAA-TAA---TTTGCTTTCC-A---GATGC--AG-TTAC---TTTTCCCCTAT-TATC-AA-GAAAACACATAAGGAATAGAATGCCTTTG-GATTTTATATTAAGGGATAATATCTCATGCATAACTA---TT---AC-AATATG-ATAA--TTA-TGTACGACCTG-T--TTAATAAAACA------ACATATATATTTTTAGC-ACGATATGGCTTCCGTATAAAAATTG-CAAATT-AGCATGATCTTTT-GCTCTTTCTGAT--T--GGCTAATTATGCTTTACCG--GATGCAA-CAG-TTGATAAAAGATGGA----AGTAGACTAAGAGTC---AAG-TCAAGTTTAGATGTATAACG-TAAC--ATTC-AAAGTCTC-TTGA-A---CTGGGCAAGTTTA-AGTAGT-A-TCAAAGAAA-ATCCTT-CGGTAAAAAAGGTGTCAGTTATAC-AG---ACATTCTG--GAA--T-ACATACTTCATTTTC--TTAA-----ATA-----TGCATGCTGCAGCGAACATT-ATGGAATATTACTGAAAATGAAAGTGTACATGTT-AAGT-AATT-ACCACATGGCCCGACATTCTTCCA-C---T-----TATCTCTAATAACAAATA-CC-ATT-AA-GATG-CACGGGT-AAACTGCA-GAC--AATTT-GCCG-AATTTGGTAA
gi|7                          : aAACATTACCAAAAT-TGGTAATTTTTGTTG----TT-CCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-ATTGCAA-AA-A-GTG-GGAA-------ATCGTTT-GTCTATGGCATTAAT-TTA----AT-GTATA-TAA-A-G--A-AGCGTA-TTAT----AC-TGA--AAATT-TAG-----T-TC-------------C-AC-A----CAGCTG------------CGTCTTGA-A--CAGGG--ACG-------TGAAAAAG--GA----GG--CT-GTC-TTGCAAGTAGAATGCTACAA--TAGA-CTAAAC---CA-------------CTAA-C-A--AT------------AT---TTCATTTCCA----TTC-A---GT-TTA-T----A-GTGAAA--AA--TGTTGGT--T--A-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAAGAAGT-ACAG-ATCACA-TG-TTACAA--T-AA-ACA----A-TG--ATA-------AT-----C-ATtgt
gi|15                         :  AACATTAT---ATT-TGGTATTTTTTGTTG----GTGCT--T-AT-GA--ACAAGAATG-A--AATCTCGT-G-A-TTATTGCAA-AA-A-GTG-GGAG-------ATCATTT-GCTTATGGCATGAAT-TTTCTCTAT-ACATA-TAA-A-G--A-AGCGCA-TTGT----AC-TGA--CAATT-TAG-----T-TC-------------C-AC-A----CAGCTG------------CGTCTTGA-G--AAGGG--ACG-------TGAAAAGGGAGA----GG--CT-GTC-TTGCAAGAAGAATGTTACAA--TGGA-CTAAAC---TA-------------CTGA-C-AATAT------------AT---TTCATTTCCA----TT
gi|24                         :  AACATTACCAAAAT-TGGTAATTTTTGTTG----TT-CCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-ATTGCAA-AA-A-GTG-GGAA-------ATCATTT-GTCTATGG
gi|28                         :  AACATTACCAAATT-TGGTAATTTTTGTTGGTGCTT-C-A-TGAT-GA--ACAAGAATGGA--AATCTCGT-G-ATT-ATTGCgt
gi|9                          :   ACATTACCAAAAT-TGGTAATATTTGTTG----TTTCCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-ATTGCAA-AA---GTG-GGAA-------ATCATTT-GTCTATGGCATTAAT-T-C----AT-GTAAA-AAA-AAG--A-AGCGCA-TTGT----AC-TGA--AAATT-TAG-----T-TC-------------C-AC-ATGCACAGCTG------------CGTCTTGA-G--AAGGG--AAG-------TGAAAAAG--GA----GG--CT-GTC-TTGCAAGTAGAATGCTACAA--TGGA-TTAAAC---CA-------------CTAA-C-A--AT------------AT---TTCATTTCCA----TTC-A---GT-TTA-A----A-GTGAAA--AA--TGTTGGT--T--A-CAA--TTT---GTTC--AGTATA--CT-TTTAGATCTT-CGT-CAGTGC-AAGGAAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-T
gi|21                         :   ACACTACCAAATT-TGGTAATATTTGTTG----TT-CCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-GTTGCAA-AA-A-GTG-GGAG-------ATCATTT-GTCTATGGCA----------------GTA-A-TAA-A-G--A-AGCACA-TTGT----AC-TGA--AAATT-TAG-----T-TC-------------C-AC-A----CAGCca
gi|10                         :    CATTACCAAA----------TTTTGGCA----TT-TTA-T-AT-GA--ACAAGGATGGA--AATCTCGTTGTA-T-ATTGCAACAA-A-GTGCGGGATACATGTATAATTT-GTTTATGGCATGAATCTTC----CT-CT-TA-TAA-A-AGAA-AGTGCAATGTC----AC-TGA--AAATG-TAG-----T-TC-------------C-AC-A----CAGCTG------------CGTCATG--G--AAGGG--ACG-------TGGAAAGG--GA----GGT-CTGGTC-TTGCAAGTAGATTGTTAC----------------------------------------A--AT------------AT---TTAATTTCCAT---TTC-A---GT-TTA-A----A-GTGAAAACAA--T-TTGGT--T--A-C-A--TTT---GTTCTGTGTATG--CCGTTTAGCTCTT-CGT-CAGTGC-AAGGAAGTAAAAG-ATTACA-TG-CTA
gi|6                          :       gACTACAATGTGGTAATATTTGTTG----TT-CCAAT-ATTGATAACAGAAATGGAGAAACTTCGT-G-A-T-GTTGCAA-AATA-GTG-GGAG-------ATCATTTGGTTTATGGCATGAATATTC----CTAGTATA-TAATA-G--A-AACAC--CTGT----ACTTGA--AAATTGTAG-----TATC-------------C-AC-A----CAGC-G------------CGTCTTGA-GGAAAGGG--AAGGTCTGTCTGCAAGTA--GATTTTAGTTCT-ATCTTTGCAA-TAG-ATTTTACAA--TGGA-CTTAACACGCA-------------CTAA-C-A--AT------------ATGCATTCATTTCCA----TTC-A---GT-TTA-A----A-GTGAAA--CA--TTTTGG---C--A-CAAT-TTT---GTTC--AGT-TA--C----TA---CTT-CGT-CAGTGCGAAGGAAGT-AAAG-AT--TG-TT-TTGTAA--T-AATATA------------C-------AT-----C-ATT-----
gi|8                          :        cCCCAATT-TGGTAGTTTTTGTTG----T----A-T-AG-GA--ACAAGAATGAA--AATCTCGT-G-A-T-TTTGCAA-AA-A-GTG-GAAG-------GTCATTT-GTTTATGGCATGAAT-TTC----TT-CTATA-TAA-A-G--A-AGTGCA-TTGT----AC-TGA--AAATT-TAG-----T-TT-------------C-AC-A----CAGCTG------------CGTCTTGA-G--AAAGG--ACG-------TGAAAAGG--GA----GA--TT-GTC-TTG--------------CAA--TGGA-CTAAAC---TA-------------CTAA-A-A--AT------------AT---TTCATTTAAA----TTC-A---GT-TTA-A----A-GTTAAA--CA--TTTTGGT--T--A-CAA--TTT---GTTC--AGAATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAGGAAGT-AGAG-ATCACG-TG-CTACAA--T-AA-ACA----A-TG--ATA-------TT-----C-ATT-----T-----
gi|5                          :                                                                                                                ATT-ATCTATG-----------C----AT-ATATAATGA-A-G--ATAGCGTA-TTTTTACTAT-TGATTAAATT-AATAGACAT-TCTGAAAGCATCACTC-AT-G----CAGCTGTTTA--------CATCT-GATG--CAAGATCGAT-------TTATAATG--GAT---GG--CT-ATC-T-GCAAGTTGGAGCCTA--A--TGTA-CTAAAT---TAGTGACTTTTTAATCTGA-C-ACCATCTAGTTTGCCGGAT---TT--TTTCCAAGATTTCTA---GG-TTATA----A-GTGAAA--GAGATGT-GGT--T--A-CA---TCT---GTTC--AGTATCATCCATTTAG-TCTT-CGTTCAG-GC-AAGGAATT-AAAG--CCACG-TG-C-ACAACAT-AA-ACATGATA-TA--ATC-------ATTTAAAC-ATT-----TAATCTTCGGAACGAACAA-TTT--ACTACGGTAGGCCGGTA-GCCAG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATG-GCA--TTGAT---ATGTAA-TAA---TTTGCTTTCC-A---TATGC--AG-TTA----CTTTTCCCTAT-TATC-AA-GAAAACACATAAGGAATAGAATGCCATCG-GATTTTA---TAAGGGGTAATATCTCATGTGTAACTTATCAT---GC-AATACGAATAAGCTTA-TGTACGACCTG-T--TTAATAAAACAGCAT--ATA-----ATTTTTAGC-ACGATATAGCTTCTGTGCAAACATTG-CAAATT-GGCACGATCTTTT-aaacatttgatcttcggaa
gi|33                         :                                                                                                                                                   -TAA-A-G--A-AGCACA-CTGT----AC-TGA--AAATT-TAG-----T-TC-------------C-AC-A----CAGCTgctct
gi|32                         :                                                                                                                                                                                               -----T-TC-------------C-AC-A----CAGCTG------------CGTCTTGA-G--AAGGG--ATG-------TGAAAAAG--GA----GG--CT-GTC-TTGCAA
gi|34                         :                                                                                                                                                                                                                                                                 G--AAG-------TGAAAAAG--GA----GG--CT-GTC-TTGCAAGTATAA
gi|20                         :                                                                                                                                                                                                                                                                                         A----GT--CT-ATC-TGGCAAGTAGA-T-TTACAA--TGGA-CTAAAA---CA-------------CTAA-C-A--AT------------AT---TTCATTTCCA-----TC-AGGTGT-TAA-A----A-GTGAAA--CA--T-TTTGT--C--ACCAACTTTT---GGTC--A----------TT--GCTCTT-CGT-CAGTG---AAGAAGT-AAAG-AT
gi|22                         :                                                                                                                                                                                                                                                                                                --CT-ATC-TGGCAAGTAGATTGTTACAA--TGGA-CTGAAC----A-------------CTAAAC-A--AT------------AT---TTCATTTCCA----TTC-AAG-GTGTTA-A----A-GTGAAA--CC--T-TTTGT--C--A-CAA--CTTTTGGTTC--A-TGTG--C---------CTT-CGT-CAGTGC-AAGGAAGT-AAAG-Agttttggtaataattaacaagttgtccacatttgg
gi|19                         :                                                                                                                                                                                                                                                                                                      gt-TTGCAA-TAGGATTTTACGACATGGA-CTAAACAC-CA-------------CTAA-CCA--AG------------AT---TTCATT-CCA----TTC-A---GT-TTA-A----A-GTGAAA--CA--TTTTGGTCGC--A-CAA--TTTG--GTTC--AG----------TTAGCTCTTACGT-CAGTGCGAAGGAAGT-AAAG-AT
gi|27                         :                                                                                                                                                                                                                                                                                                                                                                                                         aagtagattgtctagtcat-GTGAAA--CA--T-TTGGT--T--AACAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-C-------------GGAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-gttttttgtaataatataatcagt
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tATG--CC-TTCAGCTCTT-CGT-CAGTGC-AAGGAAGT-AAAGAATCATGTTGCCTACAA--TAAA-ACA----AGTGAAATCAATTTAAAC-----C-ATTTAATCT-----TCGGAAACGACAAGTTT--ACTAC--G------GTA-GCCGGAGAAATTGT-CTTTCTTTCT-AAAGATTGAAAAAG-GCAATTCAATGTTAATTAA-TAAAATTTCGCTTTCC-ATTTTATGCTGTG-TTA----CTTTTCTC-AT-TATC-AAGGAAAACACATAACGAATAGAATGCCATCGCGATTTaa
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gta--CT-TTTAGCTCTT-CGT-CAGTGC-AGGGAAGT-AAAG-ATCACA-TG-CTACAA--T-AA-ATA------TA--ATC-------AT-----A-ATT-----TGATCTTCGGAACGGATAA-TTT--ACTAC--G------GTA-GCCGG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATG-ACA--TTGATG---TGTAA-TAA---TTTGCGTTCA-A---GATGC--AG-TTAATTATTTTTCCCTAT-TATC-AA-CAAAATACACAAGGAGTAGAATATCTTAG-GATTTTA---TAAGGGATAATATATCATGCATAACTA---AT---GC-AATACGAATAAACTTA-TGTACAACCTG-T--TTAATAAAATA------ACATAT-TATT---AGC-ACGGTATGGCTTCCTTACTAAAATTG-CAAATT-AGCATGATCTTTT-GCTCTTTCTGAT--T--AGCTA---ATGCTTTACCG--GATGCAA-CAG-TTGATGAAAGATGGA----AGCA---G---AGTC---AAG-TCAAGTTTAGAT-------G-TAAC--ATTC-AAAGTCTC-TTGA-A---CTGGGCAAGTTTA-AGTAAT-A-TTCAAGAAA-ATCCCT-TGGTCAAAAAGGTGTCAG---AAC-AT---ACAACCTG--GAA--T-ACATACTTCATTTTC--ATAA-----CTA-----TGCA----GCAGTGAACATT-ATGGAATATTACTGAAAATGAAAGTGTACATGTT-AAGT-AATT-ACCACATGGCCCGACCTTCCA----C---T-----TATCTCTAATAACAAATA-CT-ATT-AA-GATG-CACGAGA-AAACTGCG-GAC--AATTC-GCCG-AATTCGGaagtgtttataagggc
gi|35                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TAGCTCTT-TGT-CAGTGC-AAGGAAGT-AAAG-A
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AACGGAAAA-TTTTAGCTAC--G------GTAAGCCGG-GAAA-TGTAC-TTCTTTCTTAAAGATTG-AAATGAACA--TTGATG-T-TGTAACTAA---TTTGCTTTCCAA---GATGC--AGTTTA----CTTTTCCCTATGCATCAAA-GAAAA
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TAACTT---ATCATGC-AATACGAATAAGATTA-TGTATGACCTG-T--TTAATAAAACAGCAT---------TATTTTTAGC-ACGATATAGCT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gtgAGGAATAAG-TTA-TG----ACATA-TAATAGATATAAT--CATTTGCA-ATATATTTT-AGCGACGATA-AGCTTCCGTACAAACATTGGCAAATTTGGCATGATCTTTTGCTCTTCTCTGATAATTAAACTA---GGAATATAATACTGATG--A-CGA-TTAATA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              atgtcttatgtttattatgatggacgTACCG--GATGCAG-CAG-TTGATAAAAGATGGA----AGCA---G---AATC---AATCTCAAGTTTAGAT-------G-TAAA--ATTT-AAAGTCTC-T-GA-A---CTGATCAAGATTA-AGTAGT-A--CAAAGAAC-ATCCTT-CGGTCAAAA-GGTGTCAG---TACCAT---ACAACCTGGAAAA--T-ACATACTTCATTTTC--ATAA-----ATAATGTATGCA----TCAGCGAACATT-ATGGAATATTACTGAAAATGAAA-TGTGCATGTT-AAGT-AATT-AAAACATG--CCGACATTCT-----TCCAC-----TATCTCTAATAACAAttggaccagaagtgtcaa
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CA--GATGCAGGCAG-TTGATAAA-GATGGATCAAAG---------AGTC---AAG-TCAAGTTTAGAT-------G-TAAA--ATTT-AAAGTCTCCTTGAGA---CTGAGCAAGTT-A-AGTA-T-C-CCAAAGAAC-ATCCT--CGGTCAAAA-GGT-TCAG---TAC-AT---ACA-CCTG--GAA--TTACATACTTCATTTTC--ATAATACATGTA-----TGCA----TCAGCGAACATT-ATGGAATATTACTGAAAATGAAAGTGTGCATGTT-AAGT-AATT-GAAACCTGGTCCGACATTCTTCCA-C---T-----TATCTCTAA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAA----AGCA---G---AGCCCGAAAG-TCAAGTTTAGAT-------GATGACCAATTTTAAAGTTTC-TTGA-AAAACTGG-CAAGTTTACAGTATTCACTCAAAGAAAATTCCTTTCGGTCAAAAAGGT-TGAG---TAC-AT---ACAGCCTG--AAA--TGAAATTCTTCATTT----CTAA-----ATA-----TGCA-----CAGC-AACA-T-A-GGAATATTACTGAGAAAGAAATTGTACA-ATTAAAGTAAATT-AAAACAAGGCCA-ACATTCTTACCAC---T-----TATCTT---------ATACCC-ATTAAA-GATGCCAAGGGGAAAACTGCGCGAA---ATT--GCCG-TATTT-GTAATTGt
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            C--ATTT-AAAGTTTC-TTGA-A---CTGGGCATGTTTA-AGTAGT-A-TCAAAGAAA-TTCCTT-Ctt
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGA-A---CTGGACAAGTTTA-AGTAGT-A-TCAAAGAAA-TTCCTT-CGGTCAAAAAGGTGTCAG---TAC-ATGCTACAGCCTG--AAA--T-AAATTC--------------A-----ATA-----TGCA----GCAGCAAACA---ATG---------TGAAAATGAAAGTGTACATGTT-AAGT-AATT-AAACCATGGCCCGACATTCTTCTA-C---T-----TATCTCTAATAACAAATA-CC-ATT-AA-GATG-CAAGGGA-AAACTGCG-GAA--CATTC-GCCG-TATTTGGTAAgg
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AG---TAC-AT---A-AGCCTG--AAGATT-AAATTCTTAATTTTTCTTTAA-----ATA-----TGCA----GCAGCAAACA-T-ATGGCAAATTACTG-AAATGAAATTGTACATGTT-AAGT-AATTAAAAACATGGTCCGACTTTCT-----T---TCACTGTAT-TCTAATAACAAATA-CCGATT-AAGGATG-CAAGGAT--AACTGCG-GAAAGAATTCGGCCGTTATT--GTAAtgt
gi|30                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     -----C---T-----TATCTCTAATAACAAATG-CC-ATA-AA-GAGG-CAAGGGA-AAATTGCG-GAA--CATTC-GCCG-TAtgttta

Unaligned ( gi|25 ): TCATTTGATATGTACTACCACAGCAGCGTTGGAATATTGTAGAATGAATATTGTATCAGTTAAAGTAGATTAAGCAAGTCAGTCAATTC
Unaligned ( gi|29 ): ATAAACCACTTACCAATTTATTTTTGTTCCAATGAACGATGGCCTATGTGCAATAAGGAGACAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                    1111111                      11111                                                               222222222222                                                 222222222222222222222222                     1111                                     111                        1111                                                                                                       1111111111   11111111111111     33333333333                              22222222                                                  222222         111            1111            1111                                                      2222222      111                         111  111            111                                   11111111                                                                                     111                                            111111   111                    1111111                                                                                                                                       11111   11111    11111         111                                                                 33333                                                                     1             
lowQualScore                  :                                                                                                                                                                                                          1              555    3   3 3  3  44           44        3 3 3 6       3  3 3         3   1111111  3           2   8   11111 4        3 3 55           3  3        3    3   3  3 7777      000000000000               2         55    6  3              999999999999999999999999 0      44    3  0   1111     3 3 44    555          9999   3 000  3   3 7777 3   3    3 3333  3   44 44 6   77   888    44      33 77          2   2      5        2    2      3  3      55 3  3   2222222222   77777777777777  4  22222222222             5   77         5 00000000    5    5   5 5        5        5      5  77     666666     5   000          5 1111    77  5   2222        5   5    5  5                             6   1111111      111                  2      000  000    5 77    000     4    5               5    5   33333333  9999      1   5                          6      6             1     8              777                6   6               77      666666   000   5             5  8888888  66    5        5    4 777    0        4    0 4 4         1   66           3   2     777  4  777   1    66   66 8 1  1          2 66  11111   11111    00000    2    000                       1          4    4    8         1          66666 4 4                  5  5   5  5     66     5           777    5    0    00    1  
lowQualScore                  :                                                                                                                                                                                                          .              ...    .   . .  .  ..           ..        . . . .       .  . .         .   .......  .           .   .   ..... .        . . ..           .  .        .    .   .  . ....      ............               .         ..    .  .              ........................ .      ..    .  .   ....     . . ..    ...          ....   . ...  .   . .... .   .    . ....  .   .. .. .   ..   ...    ..      .. ..          .   .      .        .    .      .  .      .. .  .   ..........   ..............  .  ...........             .   ..         . ........    .    .   . .        .        .      .  ..     ......     .   ...          . ....    ..  .   ....        .   .    .  .                             .   .......      ...                  .      ...  ...    . ..    ...     .    .               .    .   ........  ....      .   .                          .      .             .     .              ...                .   .               ..      ......   ...   .             .  .......  ..    .        .    . ...    .        .    . . .         .   ..           .   .     ...  .  ...   .    ..   .. . .  .          . ..  .....   .....    .....    .    ...                       .          .    .    .         .          ..... . .                  .  .   .  .     ..     .           ...    .    .    ..    .  
lowQualScore                  :                                                                                                                                                                                                          0              888    3   3 3  3  66           66        3 3 3 7       6  6 6         6   8888888  6           5   0   77777 0        6 6 00           6  6        6    3   3  3 1111      555555555555               3         00    2  1              111111111111111111111111 4      66    3  5   4444     3 3 66    444          6666   3 444  3   3 1111 1   1    1 7777  1   22 22 2   33   555    22      77 55          5   5      0        5    5      3  3      00 6  6   5555555555   66666666666666  4  11111111111             7   99         7 77777777    7    7   7 7        7        7      7  99     444444     7   000          7 0000    99  7   1111        7   7    7  7                             7   7777777      777                  7      000  000    7 99    000     3    7               7    7   11111111  0000      4   7                          7      7             0     0              555                7   7               99      444444   000   7             7  6666666  99    0        0    4 888    1        4    1 4 4         0   11           2   5     888  4  888   9    11   11 9 0  0          6 11  11111   11111    66666    7    888                       1          4    4    9         9          77777 0 0                  0  0   0  0     99     9           999    0    0    99    0  
consensus                     :                                                                                                                                                                                              AACATTACCAAATTTGGTAATTTTTGT---TGTT-CCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-ATTGCAA-AA-A-GTGGGAGAT-CAT-------TT-GTCTATGGCATGAAT-TTC----AT-GTATATAA-A-G--AAGCGCATTGT-AC-TGAAAATT-TAGT-TCC-AC-A----CAGCTG------------CGTCTTGAGAAGGGACGTGAAAAGG--GAGG-CT-GTCTTGCAAGTAGA-----------------------ATGTTACAA--TGGA-CTAAAC---CACTAA-C-A--ATAT---TTCATTTCCA----TTC-A---GT-TTA-A----A-GTG-AAAC-A--T-TT-GGT--T--A-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAGGAAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-TG--ATC-------AT-----CA-TT-----T-----TCGGAACGGACAA-TTT--ACTACGGTA-G--------CCGG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATGG-CA--TTGATG-T--ATGTAA-TAA---TTTGCTTTCC-A---TATGC--AG-TTA----CTTTTCCC-TAT-CATC-AA-GAAAACACATAAGGAATAGAATGCCATCG-GAT-------TTTATA---AGGGGTAATATCTCATGCGTAACTT---AT---GCAA-T--ACGA---ATAAGCTTAT-GTACGACCTGTTTAA-TAAA-ACAG-CAT--ACATATATATTTTTAGC-ACGATATAGCTTCCGTACAAACATTG-CAAATT-GGCATGATCTTTTGCTCTT-TCTGATTAGCTAGT---GCTTTACCGGATGCAA-CAG-TTGATAAAAGACGGA--AGCAGA------GCC---AAG-TCAAGTTTAGATG-TG-------AC--ATTT-AAAGTCTC-TTGA-A---CTGGGCAAGTTTA-AGTAGT-A-TCAAAGAAANTCC--TTCGGTCAAAAAGGTGTCAGT---AC-AT---ACAGCCTG--AAA--T-AAATNCTTCATTTTCNT--AA-----ATA-----TGCA----GCAGCGAACATT-ATGGAATATTACTGAAAATGAAAGTGTACATGTT-AAGT-AATT-AAAACATGGCCCGACATTCTT-CCAC-T-TATCTCTAATAACAAATA-CC-ATT-AA-GATGC--AAGGGAAAACTGCGGAA--NATTC-GCCG-TATTTGGTAAATG
Reference ( family-1341 )     :                                                                                                                                                                                              AACATTACCAAANTTGGTAATTTTTGT---TGTT-CCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-ATTGCAA-AA-A-GTGGGAGAT-CAT-------TT-GTCTATGGCATGAAT-TTC----AT-GTATATAA-A-G--AAGCGCATTGT-AC-TGAAAATT-TAGT-TCC-AC-A----CAGCTG------------CGTCTTGAGAAGGGANGTGAAAAGG--GAGG-CT-GTCTTGCAAGTAGA-----------------------ATGTTACAA--TGGA-CTAAAC---CACTAA-C-A--ATAT---TTCATTTCCA----TTC-A---GT-TTA-A----A-GTG-AAAC-A--T-TT-GGT--T--A-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAGGAAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-TG--ATC-------AT-----CA-TT-----T-----TCGGAACGGACAA-TTT--ACTACGGTA-G--------CCGG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATGG-CA--TTGATG-T--ATGTAA-TAA---TTTGCTTTCC-A---NATGC--AG-TTA----CTTTTCCC-TAT-TATC-AA-GAAAACACATAAGGAATAGAATGCCATCG-GAT-------TTTATA---AGGGGTAATATCTCATGCGTAACTT---AT---GCAA-T--ACGA---ATAAGCTTAT-GTACGACCTGTTTAA-TAAA-ACAG-CAT--ACATATATATTTTTAGC-ACGATATAGCTTCCGTACAAACATTG-CAAATT-GGCATGATCTTTTNCTCTT-TCTGATTAGCTAGT---GCTTTACCGGATGCAA-CAG-TTGATAAAAGATGGA--AGCAGA------GTC---AAG-TCAAGTTTAGATG-TA-------AC--ATTT-AAAGTCTC-TTGA-A---CTGGGCAAGTTTA-AGTAGT-A-TCAAAGAAANTCC--TTCGGTCAAAAAGGTGTCAGT---AC-AT---ACAGCCTG--AAA--T-ANATNCTTCATTTTCNT--AA-----ATA-----TGCA----GCAGCGAACATT-ATGGAATATTACTGAAAATGAAAGTGTACATGTT-AAGT-AATT-AAAACATGGCCCGACATTCTT-C--C-T-TATCTCTAATAACAAATA-CC-ATT-AA-GATGC--AAGGGNAAACTGCGGAA--NATTC-GCCG-TATTTGGTAANTG
gi|1                          :                                                                                                                                                                                              AACATTACCAAATTCGGTA--------------------T-AT-GA--ACAAGAATGGA--AATCTCAT-G-A-TTATTGCAA-AA-A-GTGGGAGTT-CAT-------TT-GTTTCTGGCATGAAT-TTC----CT-CTATATAA-A-G--AAGTGCATTGT-AC-TGAAAATT-TAGT-TCC-AC-A----CAGCTATTAACACAGCTTCGTTTTGAGAAGGGACGTGAAAAGG--GAGG-CT-GTCTTGCAAGTAGA-----------------------ATGTTACAA--TGGA-CT----------TGA-C-----TAT-----CATTTCCA----TT------AT-TTA-ACTATA-CTG-AAAC-A--T-TTTGGT--T--A-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-TGT-CAGTGC-AAGGAAGT-AAAG-CTCACG-TG-CTACAA--T-AA-ACA----A-AC--ATT--------T-----GA-TC-----T-----TTGGAATGGATAA-TTT--ACTACGGTA-G--------CCAG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATGG-CA--TTGAT-----ACGTAA-TAA---TTTGCTTTCC-A---GATGC--AG-TTA----CTTTTCCCCTAT-TATC-AA-GAAAACACATAAGGAATAGAATGCCTTTG-GAT-------TTTATATTAAGGGATAATATCTCATGCATAACTA---TT---ACAA-T--ATGA----TAA--TTAT-GTACGACCTGTTTAA-TAAA-ACA-------ACATATATATTTTTAGC-ACGATATGGCTTCCGTATAAAAATTG-CAAATT-AGCATGATCTTTTGCTCTT-TCTGATTGGCTAATTATGCTTTACCGGATGCAA-CAG-TTGATAAAAGATGGA--AGTAGACTAAGAGTC---AAG-TCAAGTTTAGATG-TATAACGTAAC--ATTC-AAAGTCTC-TTGA-A---CTGGGCAAGTTTA-AGTAGT-A-TCAAAGAAAATCC--TTCGGTAAAAAAGGTGTCAGTTATAC-AG---ACATTCTG--GAA--T-ACATACTTCATTTTCTT--AA-----ATA-----TGCATGCTGCAGCGAACATT-ATGGAATATTACTGAAAATGAAAGTGTACATGTT-AAGT-AATT-ACCACATGGCCCGACATTCTT-CCAC-T-TATCTCTAATAACAAATA-CC-ATT-AA-GATGC--ACGGGTAAACTGCAGAC--AATTT-GCCG-AATTTGGTAA
gi|10                         :                                                                                                                                                                                               aCATTACCAAATTTTGGCATTTT-------------A-T-AT-GA--ACAAGGATGGA--AATCTCGTTGTA-T-ATTGCAACAA-A-GTGCGGGATACATGTATAATTT-GTTTATGGCATGAATCTTC----CT-CT-TATAA-A-AGAAAGTGCAATGTCAC-TGAAAATG-TAGT-TCC-AC-A----CAGCTG------------CGTCATG-GAAGGGACGTGGAAAGG--GAGGTCTGGTCTTGCAAGTAGA-----------------------TTGTT-------------------------A-C-A--ATAT---TTAATTTCCAT---TTC-A---GT-TTA-A----A-GTGAAAACAA--T-TT-GGT--T--A-C-A--TTT---GTTCTGTGTATG--CCGTTTAGCTCTT-CGT-CAGTGC-AAGGAAGTAAAAG-ATTACA-TG-CTAtgt
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gGAA--AGCAGA------GCCCGAAAG-TCAAGTTTAGATGATG-------ACCAATTTTAAAGTTTC-TTGA-AAAACTGG-CAAGTTTACAGTATTCACTCAAAGAAAATTCCTTTCGGTCAAAAAGGT-TGAGT---AC-AT---ACAGCCTG--AAA--TGAAATTCTTCATTT--CT--AA-----ATA-----TGCA-----CAGC-AACAT--A-GGAATATTACTGAGAAAGAAATTGTACA-ATTAAAGTAAATT-AAAACAAGG-CCAACATTCTTACCAC-T-TATCTT---------ATACCC-ATTAAA-GATGCCAAGGGGAAAACTGCGCGA--AATT--GCCG-TATTT-GTAATTG
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATG--CC-TTCAGCTCTT-CGT-CAGTGC-AAGGAAGT-AAAGAATCATGTTGCCTACAA--TAAA-ACA----AGTGAAATCAATTTAAAC-----CA-TTTAATCT-----TCGGAAACGACAAGTTT--ACTACGGTA-G--------CCGGAGAAATTGT-CTTTCTTTCT-AAAGATTGAAAAAGG-CAATTCAATG-TTAAT-TAA-TAAAATTTCGCTTTCC-ATTTTATGCTGTG-TTA----CTTTTCTC--AT-TATC-AAGGAAAACACATAACGAATAGAATGCCATCGCGATTTAAGTGTTTATA---AGGGtt
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gtaTACCGGATGCAG-CAG-TTGATAAAAGATGGA--AGCAGA------ATC---AATCTCAAGTTTAGATG-TA-------AA--ATTT-AAAGTCTC-T-GA-A---CTGATCAAGATTA-AGTAGT-A--CAAAGAACATCC--TTCGGTCAAAA-GGTGTCAGT---ACCAT---ACAACCTGGAAAA--T-ACATACTTCATTTTCAT--AA-----ATAATGTATGCA----TCAGCGAACATT-ATGGAATATTACTGAAAATGAAA-TGTGCATGTT-AAGT-AATT-AAAACATG--CCGACATTCTT-C--CAC-TATCTCTAATAACAAc
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAGATGCAGGCAG-TTGATAAA-GATGGATCAA-AGA------GTC---AAG-TCAAGTTTAGATG-TA-------AA--ATTT-AAAGTCTCCTTGAGA---CTGAGCAAGTT-A-AGTA-T-C-CCAAAGAACATCC--T-CGGTCAAAA-GGT-TCAGT---AC-AT---ACA-CCTG--GAA--TTACATACTTCATTTTCAT--AATACATGTA-----TGCA----TCAGCGAACATT-ATGGAATATTACTGAAAATGAAAGTGTGCATGTT-AAGT-AATT-GAAACCTGGTCCGACATTCTT-CCAC-T-TATCTCTAAT
gi|15                         :                                                                                                                                                                                              AACATTAT---ATTTGGTATTTTTTGT---TGGT-GCT-T-AT-GA--ACAAGAATG-A--AATCTCGT-G-A-TTATTGCAA-AA-A-GTGGGAGAT-CAT-------TT-GCTTATGGCATGAAT-TTTCTCTAT-ACATATAA-A-G--AAGCGCATTGT-AC-TGACAATT-TAGT-TCC-AC-A----CAGCTG------------CGTCTTGAGAAGGGACGTGAAAAGGGAGAGG-CT-GTCTTGCAAGAAGA-----------------------ATGTTACAA--TGGA-CTAAAC---TACTGA-C-AATATAT---TTCATTTCCA----TT
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGA-A---CTGGACAAGTTTA-AGTAGT-A-TCAAAGAAATTCC--TTCGGTCAAAAAGGTGTCAGT---AC-ATGCTACAGCCTG--AAA--T-AAATTC--------------A-----ATA-----TGCA----GCAGCAAACA---ATG---------TGAAAATGAAAGTGTACATGTT-AAGT-AATT-AAACCATGGCCCGACATTCTT-CTAC-T-TATCTCTAATAACAAATA-CC-ATT-AA-GATGC--AAGGGAAAACTGCGGAA--CATTC-GCCG-TATTTGGTAA
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGT---AC-AT---A-AGCCTG--AAGATT-AAATTCTTAATTTTTCTTTAA-----ATA-----TGCA----GCAGCAAACAT--ATGGCAAATTACTGAAA-TGAAATTGTACATGTT-AAGT-AATTAAAAACATGGTCCGACTTTCTT-TCAC-TGTAT-TCTAATAACAAATA-CCGATT-AAGGATGC--AAGGAT-AACTGCGGAAAGAATTCGGCCGTTATT--GTAAtgt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATGTCTTATGTTTA--TT---AT---G--A-TGGACGAGGAATAAG-TTAT-G----ACATAT--AA-TAGATATAATCATTTGCA-ATATATTTT-AGCGACGATA-AGCTTCCGTACAAACATTGGCAAATTTGGCATGATCTTTTGCTCTTCTCTGATtgttta
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGCAA-TAGG-----------------------ATTTTACGACATGGA-CTAAACAC-CACTAA-CCA--AGAT---TTCATT-CCA----TTC-A---GT-TTA-A----A-GTG-AAAC-AT-T-TT-GGTCGC--A-CAA--TTTG--GTTC--AG----------TTAGCTCTTACGT-CAGTGCGAAGGAAGT-AAAG-ATaattaaactaggaatataatactgatgacgattaatattggaccagaagtgtcaa
gi|2                          :                                                                                                                                                                           aagtagattgtctagtcatAACATTACCAAAATTGATAATTTTTGT---TGTT-CTA-T-AT-GA--ACAAGAATGGA--A-TCTCAT-G-A-T-ATTGCAA-AA-AAGTGGGAAAT-CAA-------TT-GTCTATGGTATTAAT-TTC----AT-GTATATAA---G--AAGCGCATTTT-AC-TGAAAATT--ATT-TCCCACCA----CAGCTG------------CGTCTTGAGAAGGGAAGTGAAAAGG--GAGG-CT-GTCTTGCAAGTAGA-----------------------ATGTTACAA--TGGAACTAAAC---CACTGA-C-A--ATAT---TTCATTTCCA----TTC-A---GT-TTA-A----AAGTG-AAAA-A--TGTT-GGT--TTTA-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAGGAAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-TG--ATC-------AT-----CAATT-----T-----TCGGAACGGACAA-TTT--ACTACTG-A-G--------CCAG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATGG-CA--TTGATGAT--ATGTAA-TAA---TTTGCTTTCC-A---TATGC--AG-TTA----TTTTTCCC-TAT-CATC-AA-GAAAACACATATGGAATAGAATGCCATCG-GAT-------TTTATA-----GGGTAATATCTCAAGCATAACTT---AT---GCAAAT--AAGA---ATAAGCTTATTGTACGACCTGTTTAAATGAA-CCAG-CAT--ACATATATATTTTTAGC-ACGATATATCTTCCGTACAAACATTG-CAAATT-GGCATGATCTTTTCCTTTT-TCTGATTAACTAGT---GCTTTACCAGATGCAA-CAATTTGATAAAAGACGGA--AGCATA------GCC---AAG-TCAAGTTTCGAT--TG-------AC--ATTT-AAAGTTTC-TTGA-A---CTGGGCAAGTTTA-AGTAGT-A-TCAAAGAAATTCC--TTCATTC-AAAAGGTGTCAGT---AC-AT---ACAGCCTG--AAA--T-AAATTCTTCATTTTTCT--TA-----ATA-----TGCA----GCAGCAAACAGTAATGGAATATTACTGCAAATGAAAGTGTACATGTT-AAGT-AATTAAAAACATGGCCCTGCATTCT-----C-T-TATCTCTAACAACAAATA-CC-ATT-AA-TATGC--AAGGG-AAACTGCAGAA--CATTC-GCCGTTATTTGGTAAAgttttttgtaataatataatcagt
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                             AGT-CT-ATCTGGCAAGTAGA------------------------T-TTACAA--TGGA-CTAAAA---CACTAA-C-A--ATAT---TTCATTTCCA-----TC-AGGTGT-TAA-A----A-GTG-AAAC-A--T-TT-TGT--C--ACCAACTTTT---GGTC--A----------TT--GCTCTT-CGT-CAGTG---AAGAAGT-AAAG-AT
gi|21                         :                                                                                                                                                                                               ACACTACCAAATTTGGTAATATTTGT---TGTT-CCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-GTTGCAA-AA-A-GTGGGAGAT-CAT-------TT-GTCTATGGCA----------------GTA-ATAA-A-G--AAGCACATTGT-AC-TGAAAATT-TAGT-TCC-AC-A----CAGCgttttggtaataattaacaagttgtccacatttgg
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                -CT-ATCTGGCAAGTAGA-----------------------TTGTTACAA--TGGA-CTGAAC----ACTAAAC-A--ATAT---TTCATTTCCA----TTC-AAG-GTGTTA-A----A-GTG-AAAC-C--T-TT-TGT--C--A-CAA--CTTTTGGTTC--A-TGTG--C---------CTT-CGT-CAGTGC-AAGGAAGT-AAAG-A
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gtAACGGAAAA-TTTTAGCTACGGTAAG--------CCGG-GAAA-TGTAC-TTCTTTCTTAAAGATTG-AAATGAACA--TTGATG-T---TGTAACTAA---TTTGCTTTCCAA---GATGC--AGTTTA----CTTTTCCC-TATGCATCAAA-GAAAA
gi|24                         :                                                                                                                                                                                              AACATTACCAAAATTGGTAATTTTTGT---TGTT-CCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-ATTGCAA-AA-A-GTGGGAAAT-CAT-------TT-GTCTATGG
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGTAACTT---ATCATGCAA-T--ACGA---ATAAGATTAT-GTATGACCTGTTTAA-TAAA-ACAG-CAT---------TATTTTTAGC-ACGATATAGCTgt
gi|27                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        -GTG-AAAC-A--T-TT-GGT--T--AACAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-C-------------GGAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-
gi|28                         :                                                                                                                                                                                             tAACATTACCAAATTTGGTAATTTTTGTTGGTGCT-TCA-TGAT-GA--ACAAGAATGGA--AATCTCGT-G-ATT-ATTGCaa
gi|3                          :                                                                                                                                                                                              AACATTACCAAAATTGATAATTTTTGT---TGTT-CTA-T-AT-GA--ACAAGAATGGA--AATCTCAT-G-A-T-ATTGCAA-AA-A-GTGGGAAAT-CAA-------TT-GTCTATGGTATTAAT-TTC----AT-GTATATAA-A-G--AAGCGCATTTT-AC-TGAAAATT-TATT-TCC-AC-A----CAGCTG------------CGTCTTGAGAAGGGAAGTGAAAAGG--GAGG-CT-GTCTTGCAAGTAGA-----------------------ATGTTACAA--TGGA-CTAAAC---CACTGA-C-A--ATAT---TTCATTTCCA----TTC-A---GT-TTA-A----A-GTG-AAAA-A--TGTT-GGT--T--A-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAGGAAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-TG--ATC-------AT-----CA-TT-----T-----TCGGAACGGACAA-TTT--ACTACTGTA-G--------CCAG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATGG-CA--TTGATGAT--ATGTAA-TAA---TTTGCTTTCC-A---TATGC--AG-TTA----TTTTTCCC-TAT-CATC-AA-GAAAACACATATGGAATAGAATGCCATCG-GAT-------TTTATA---ATGGGTAATATCTCAAGCATAACTT---AT---GCAA-T--AAGA---ATAAGCTTAT-GTACGACCTGTTAAA-TGAA-ACAG-CAT--ACATATATATTTTTAGC-ACGATATATCTTCCGTACAAACATTG-CAAATT-GGCATGATCTTTTCCCTTT-TCTGATTAACTAGT---GCTTTACCAGATGCAA-CAA-TTGATAAAAGACGGA--AGCATA------GCC---AAG-TCAAGTTTCGATG-TG-------AC--ATTT-AAAGTTTC-TTGA-A---CTGGGCAAGTTTA-AGTAGT-A-TCAAAGAAATTCC--TTCATTCAAAAAGGTGTCAGT---AC-AT---ACAGCCTG--AAA--T-AAATTCTTCATTTTCTT--AA-----ATA-----TGCA----GCAGCAAACAGT-ATGGAATATTACTGCAAATGAAAGTGTACATGTT-AAGT-AATT-AAAACATGGCCCTGCATTCT-----C-T-TATCTCTAACAACAAATA-CC-ATT-AA-TATGC--AAGGGGAAACTGCAGAA--CATTC-GCCG-TATTTGGTAAATG
gi|30                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            --C-T-TATCTCTAATAACAAATG-CC-ATA-AA-GAGGC--AAGGGAAAATTGCGGAA--CATTC-GCCG-TA
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tccaC--ATTT-AAAGTTTC-TTGA-A---CTGGGCATGTTTA-AGTAGT-A-TCAAAGAAATTCC--TTCGG
gi|32                         :                                                                                                                                                                                                                                                                                                                                                                                 T-TCC-AC-A----CAGCTG------------CGTCTTGAGAAGGGATGTGAAAAAG--GAGG-CT-GTCTTGCAA
gi|33                         :                                                                                                                                                                                                                                                                                                                                             TAA-A-G--AAGCACACTGT-AC-TGAAAATT-TAGT-TCC-AC-A----CAGCT
gi|34                         :                                                                                                                                                                                                                                                                                                                                                                                                                              GAAGTGAAAAAG--GAGG-CT-GTCTTGCAAGTATA-----------------------A
gi|35                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAGCTCTT-TGT-CAGTGC-AAGGAAGT-AAAG-A
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           --CT-TTTAGCTCTT-CGT-CAGTGC-AGGGAAGT-AAAG-ATCACA-TG-CTACAA--T-AA-ATA------TA--ATC-------AT-----AA-TT-----TGATCTTCGGAACGGATAA-TTT--ACTACGGTA-G--------CCGG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATGA-CA--TTGATG-T----GTAA-TAA---TTTGCGTTCA-A---GATGC--AG-TTAATTATTTTTCCC-TAT-TATC-AA-CAAAATACACAAGGAGTAGAATATCTTAG-GAT-------TTTATA---AGGGATAATATATCATGCATAACTA---AT---GCAA-T--ACGA---ATAAACTTAT-GTACAACCTGTTTAA-TAAA-ATA-------ACATAT-TATT---AGC-ACGGTATGGCTTCCTTACTAAAATTG-CAAATT-AGCATGATCTTTTGCTCTT-TCTGATTAGCTAAT---GCTTTACCGGATGCAA-CAG-TTGATGAAAGATGGA--AGCAGA------GTC---AAG-TCAAGTTTAGATG-TA-------AC--ATTC-AAAGTCTC-TTGA-A---CTGGGCAAGTTTA-AGTAAT-A-TTCAAGAAAATCC--CTTGGTCAAAAAGGTGTCAGA---AC-AT---ACAACCTG--GAA--T-ACATACTTCATTTTCAT--AA-----CTA-----TGCA----GCAGTGAACATT-ATGGAATATTACTGAAAATGAAAGTGTACATGTT-AAGT-AATT-ACCACATGGCCCGAC---CTT-CCAC-T-TATCTCTAATAACAAATA-CT-ATT-AA-GATGC--ACGAGAAAACTGCGGAC--AATTC-GCCG-AATTCGG
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AT---TT--TTTCCAAGATTTCTA---GG-TTATA----A-GTG-AAAG-AGAT-GT-GGT--T--A-CA---TCT---GTTC--AGTATCATCCATTTAG-TCTT-CGTTCAG-GC-AAGGAATT-AAAG--CCACG-TG-C-ACAACAT-AA-ACATGATA-TA--ATC-------ATTTAAACA-TT-----TAATCTTCGGAACGAACAA-TTT--ACTACGGTA-GGCCGGTAGCCAG-GAAA-TGT-C-TTCTTTCT-AAAGATTG-AAATGG-CA--TTGAT-----ATGTAA-TAA---TTTGCTTTCC-A---TATGC--AG-TTA----CTTTTCCC-TAT-TATC-AA-GAAAACACATAAGGAATAGAATGCCATCG-GAT-------TTTATA---AGGGGTAATATCTCATGTGTAACTTATCAT---GCAA-T--ACGA---ATAAGCTTAT-GTACGACCTGTTTAA-TAAA-ACAG-CAT--ATA-----ATTTTTAGC-ACGATATAGCTTCTGTGCAAACATTG-CAAATT-GGCACGATCTTTTGCTCT
gi|6                          : attatctatgcatatataatgaagatagcgtatttttactattgattaaattaatagacattctgaaagcatcactcatgcagctgtttacatctgatgcaagatcgatttataatggatggctatctgcaagttggagcctaatgtactaaattagtgactttttaatctgacaccatctagtttgccggCACTAC--AATGTGGTAATATTTGT---TGTT-CCAAT-ATTGATAACAGAAATGGAGAAACTTCGT-G-A-T-GTTGCAA-AATA-GTGGGAGAT-CAT-------TTGGTTTATGGCATGAATATTC----CTAGTATATAATA-G--AAACAC-CTGT-ACTTGAAAATTGTAGTATCC-AC-A----CAGC-G------------CGTCTTGAG---------GAAAGGG--AAGGTCT-GTC-TGCAAGTAGATTTTAGTTCTATCTTTGCAATAGATTTTACAA--TGGA-CTTAACACGCACTAA-C-A--ATATGCATTCATTTCCA----TTC-A---GT-TTA-A----A-GTG-AAAC-A--T-TT-TGG--C--A-CAAT-TTT---GTTC--AGT-TA--C----TA---CTT-CGT-CAGTGCGAAGGAAGT-AAAG-AT--TG-TT-TTGTAA--T-AATATA------------C-------AT-----CA-TT-----
gi|7                          :                                                                                                                                                                                              AACATTACCAAAATTGGTAATTTTTGT---TGTT-CCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-ATTGCAA-AA-A-GTGGGAAAT-CGT-------TT-GTCTATGGCATTAAT-TTA----AT-GTATATAA-A-G--AAGCGTATTAT-AC-TGAAAATT-TAGT-TCC-AC-A----CAGCTG------------CGTCTTGAACAGGGACGTGAAAAAG--GAGG-CT-GTCTTGCAAGTAGA-----------------------ATGCTACAA--TAGA-CTAAAC---CACTAA-C-A--ATAT---TTCATTTCCA----TTC-A---GT-TTA-T----A-GTG-AAAA-A--TGTT-GGT--T--A-CAA--TTT---GTTC--AGTATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAAGAAGT-ACAG-ATCACA-TG-TTACAA--T-AA-ACA----A-TG--ATA-------AT-----CA-T
gi|8                          :                                                                                                                                                                                                     CCCAATTTGGTAGTTTTTGT---TGT----A-T-AG-GA--ACAAGAATGAA--AATCTCGT-G-A-T-TTTGCAA-AA-A-GTGGAAGGT-CAT-------TT-GTTTATGGCATGAAT-TTC----TT-CTATATAA-A-G--AAGTGCATTGT-AC-TGAAAATT-TAGT-TTC-AC-A----CAGCTG------------CGTCTTGAGAAAGGACGTGAAAAGG--GAGA-TT-GTCTTG-------------------------------------CAA--TGGA-CTAAAC---TACTAA-A-A--ATAT---TTCATTTAAA----TTC-A---GT-TTA-A----A-GTT-AAAC-AT-T-TT-GGT--T--A-CAA--TTT---GTTC--AGAATG--CC-TTTAGCTCTT-CGT-CAGTGC-AAGGAAGT-AGAG-ATCACG-TG-CTACAA--T-AA-ACA----A-TG--ATA-------TT-----CA-TT-----T-----
gi|9                          :                                                                                                                                                                                               ACATTACCAAAATTGGTAATATTTGT---TGTTTCCA-T-AT-GA--ACAAGAATGGA--AATCTCGT-G-A-T-ATTGCAA-AA---GTGGGAAAT-CAT-------TT-GTCTATGGCATTAAT-T-C----AT-GTAAAAAA-AAG--AAGCGCATTGT-AC-TGAAAATT-TAGT-TCC-AC-ATGCACAGCTG------------CGTCTTGAGAAGGGAAGTGAAAAAG--GAGG-CT-GTCTTGCAAGTAGA-----------------------ATGCTACAA--TGGA-TTAAAC---CACTAA-C-A--ATAT---TTCATTTCCA----TTC-A---GT-TTA-A----A-GTG-AAAA-A--TGTT-GGT--T--A-CAA--TTT---GTTC--AGTATA--CT-TTTAGATCTT-CGT-CAGTGC-AAGGAAGT-AAAG-ATCACG-TG-CTACAA--T-AA-ACA----A-Taaacatttgatcttcggaa