lowQualScore : 1111111111111111
lowQualScore : 222 1 1 1 2222 4444444 1 11 44444444 22 0000000000000000 33 3333 1 1 111 22 2 22 11 3 1 333 1 1 11 11 111 11111 11111 333333333333 66666666666 11111 111 1 11 11111 111111 222222 1111111 11 11111111111111111 333333333 222222222222 222222222222 1 2222222222 1111 111 1111111 3 11111 11111 5555555555555555555555555555 11111 1111 111111111 22222222222 11 66666666666666666666666666666666666666666 11111
lowQualScore : 2 333 3 3 6 3 7777 3333333 6 7 3 6 7 6 88 99999999 8 55 1111111111111111 6 11 5555 0 0 3 777 2 00 6 00 7 88 2 3 6 111 0 0 0 33 8 88 5 99 444 6 5 5 55555 44444 888888888888 5 3 5 5 0 77 5 22222222222 2 22222 9 5 5 5 5 888 5 5 5 1 1 5 33 5 66 66 0 8 66 4 4 777 55555 88 4 1 999999 4 66 333333 8 8888888 4 8 44 777 33333333333333333 55 4 2 111111111 4 4 8 777 4 4 4 9999 777777777777 66 4 777 9999 222222222222 4 5 5 5 1111111111 888888 5555 5 5 333 5 5 5555555 5 66 5 5 66 77777 5 22222 5 66 3 0000000000000000000000000000 4 55555 2222 4 666666666 55 4 55 4 4 777 55 3 8888 99 5 55 66 5 0 33333333333 5 33 00000000000000000000000000000000000000000 4 5 2 77 55 55 8888 666 4 0 00000 3
lowQualScore : . ... . . . . .... ....... . . . . . . .. ........ . .. ................ . .. .... . . . ... . .. . .. . .. . . . ... . . . .. . .. . .. ... . . . ..... ..... ............ . . . . . .. . ........... . ..... . . . . . ... . . . . . . .. . .. .. . . .. . . ... ..... .. . . ...... . .. ...... . ....... . . .. ... ................. .. . . ......... . . . ... . . . .... ............ .. . ... .... ............ . . . . .......... ...... .... . . ... . . ....... . .. . . .. ..... . ..... . .. . ............................ . ..... .... . ......... .. . .. . . ... .. . .... .. . .. .. . . ........... . .. ......................................... . . . .. .. .. .... ... . . ..... .
lowQualScore : 5 333 3 3 7 3 0000 3333333 7 0 3 7 3 7 33 33333333 3 77 0000000000000000 0 00 0000 0 0 2 555 5 77 7 77 3 33 3 3 0 000 0 2 0 88 0 88 8 22 000 7 7 7 99999 33333 999999999999 7 0 7 7 7 44 7 66666666666 5 55555 5 0 0 0 7 111 7 7 7 4 7 7 66 7 99 99 1 1 11 4 4 888 66666 00 4 9 111111 4 11 777777 9 9999999 4 9 22 000 88888888888888888 55 0 5 000000000 0 0 0 000 0 0 0 4444 222222222222 11 4 888 4444 888888888888 5 0 0 0 9999999999 555555 5555 0 0 888 0 0 6666666 0 99 0 0 99 55555 6 55555 0 99 2 1111111111111111111111111111 4 88888 4444 0 000000000 55 0 55 0 0 000 55 8 5555 55 7 55 99 0 2 88888888888 0 88 33333333333333333333333333333333333333333 2 7 3 99 55 88 5555 000 0 3 00000 0
consensus : ATACAAGGAANATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGT-AAA-G--TTG-------CTAACCACGATCCCACAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTT-AA--C--ATGCAG-GATATTGAT--A-ACAT-------TACGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAAT--CCCC-CCCC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA-TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCT-----N-CTGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC--GAT----C-CGCTGCA-----CAATCACTTTAT-TTATAT-CA-AAT-TTCT-T-G-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGCATTGGT---------A-AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA-CG-A----------GCCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-A--ATATT-AAA--TTGCCT-----AGAGCAT-----CA-CA--TTCTT-------------------------TCTTTT-TC---A-AT-T--T-AAGGC---------CC--AG-T--T-TA-AT---T--TGCACAGG----TCAA--CTTACCCCC--GACGCAACT--GAA-ACTA-----------G-GGG--GGTC-----NAC-TGC-CGC-----CGGATG-----TCGATC-ANTGCGATTTT-TTCTTT--CACA--ACTTTC-GGT----TGTGCA--GT-AGATCGA-----TTGGTGCCCGTG
Reference ( gi|3 ) : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGT-AAA-G--TTG-------CTAACCACGATCCCAAAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTT-A---C--ATGCTG-AATATTGATAAAAACATT-AAAC-TACATATAATTCAATGACATAGTTTCTCCAAATTATGAGATGATTGTGGA----CCCC-CCCC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTT-CAAAA-TATATTAA--TTCATAAA-TCATTTAGAA-T-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGTTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCG--TCT-----T-CTGCACAA-CCCAAAAT-CCC-CTGAGCAAA-TGG-GC--G------T-CGCTGCA-----CAATCAATTTAT-TTATAT-CA-AAT-TT-T-T-G-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATAAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-AAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGCATTGGT---------A-AA-A-T---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA-CA-A----------GCCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-A--AT-TT-AAA--TTGCCT-----AGAGCAT-----CA-CA--TTCTT-------------------------TCTTTT-TC---A-AT-T--T-AAGGC---------CC--AG-T--T-TA-AT---T--TGCACAGG----TCAA--CTTACCCCC--GACGCAACT--GAA-ACTA-----------G-GGG--GGTC-----TAC-TGC-CAC-----CGGAT------TCGATC-CCTGCGATTTT-TTCTTT--CACA--ACTTTT-GGT----TGTGCA--GT-AGATCGA-----TTGGTGCCTGTG
gi|1 : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTG-CCTTGT-AAA-AGTTTG-------CTAACCACGATCCCACAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTT-AA--C--ATGCAG-GATATTGATAAA--CAT--------ACGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAAT--CCCC-CCCC-CCCCCAACACAAA---AACACACACGGACCTGAATGATAAAAAAA--TCTTACAAAAATATATTAA--TTCA-AAA-TCATTTGGAAAT-ACCGGA-CTATTGATTTCCAA-TCTTTCTAA-TAGAA-TATAAGTTTTTCTTTCA---TCATTCTCATTTG-TTT-A--A--TTCAG-----TCGA-TCT-----A-CTGCACAA-CCAAAAAT-CCC-CTGAGCAAA-CGG-GC--GAT----C-CGCTGCA-----CAATCACTTTAT-TTATAT-CA-AAT-TTCT-T-G-AAA-AATAAGCGAACATT-T--TAT-ATCCACC--TTCT--AA-ACATGAT--AGCA-AA-TGAC---GGTGG----TTTA-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAA-GATT-GAGAC-T-GTGCTTTTGTTC-A---AA-----A--G-TTCAA--C-TGCATTGGT---------A-AA-AAT---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AAACA-A----------GCCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-AA-GT---TATAG-A--ATATT-AAA--TTGCCT-----AGAGCAT-----CA-CA--T--CT-------------------------TCTTTTATC---A-AT-T--TAAAGGT---------CC--AG-T--T-TA-AT---T--TGCACAGG----TCAA--CTTACCCCC--GACGCAACT--GAA-ACTA-----------G-GGGNNNNNN-----NNN-NNN-NNN-----NNNNN------NNNNNN-NNNNNNNNNNN-NNNNNN--NNNN--NNNNNN-NNN----NNNNNN--NN-NNNTCGA-----TTGGTGCCCGTG
gi|8 : cgttgttacataccgtggtccatcaatgccccccccccctctagagaaaatcatctgaattgttggtacttttactgggaagaacttatatatacaaacagtgtatacattcaaataattttaaataaaatttgttatttctttagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACAAGGAAAATGAAGTCGGTC---CA-AAGTT-CCTGGCCTTGTAAAA-G--TTG-------CTAACCACGATCCCACAACATCAAGCATGCGTATCAAAATACATTATCTGTTA--TTTAA---C--ATGCTG--ATATTGAT----ACA--------TACATATATTTCAATGACATAATTTCTCCAAATTATGAGATGA-TGTGGA----taa
gi|2 : cccccccccccctcctccctagagaaataccaggtaaatgatcatctgaattgttggtacttttactggaagaacttaatatacaaacagtgtatacataatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaataaagtttttgttatttctgtagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAATGTCGGTGTGGCAGAAGTTGCTTGGCATTGT-AAAAG--TTGGAAAAAATTGAC-ATGATCAAAAAACAGA-A--ATGATTA--AAAATATCTTAT-TGTTAATTTT-AACGCGAATGCAGCAATATTGA---AAACATTAAAACATACATATAA
gi|17 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaTTATGAGATGAT-GTGGAATCCCCCCACCCCACCCCCAACACACA---AACACACACGGACCTGAgcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtcaagagatatgaggtttttctgaggttcatccttattgataaggaatcagtcgatttcgcaaccagattcccgctgagaaatggggaagtacgtgacaatcaaatagtataggcacgatgcttgagaagtagaggatattgttaagtcagcttttagacataatagcatgacggtgttaataattttcagtttgattttacataataagattgagactagtgttttcgttcagaaggttcaagtgcatgtgtaaaataattcacctatcgtcgtacgacaacagaaatttcagcgtcaacaagccagtaagtgaacttggtgtacatgaagtgttatagaatatttaagcctagagatcacattctttattcaatttgtaaggcccagagttgtagatttgacggtaactatccggaacgagacctggaaattggggagg
gi|4 : A----CCCC-CCCC-CCCCCAACACACAAAGAACACACACGGACCTGGAAGAGAAAAAAAA-TCTA-CAAAA-TA-ATCAATCTCCAAAAACTCATTGGAAA-TAACCGGACCTATTGATTCCCACTTCC--CCAACTAGAACTATAACGTTTTTTCTCA---TCATACTCATT-GCTTC-G--ATCTTCAGTAAACTCGACTCT-----T-ATGCACAATCCCAAAATCCCC-CT--GCAAA-CGG-GC--ACCAAATT-CCCTCCA-----CAATTCACTTAT-TTATAT-AT-CAT-TTCT-T-GCAAACAATAAGCGATCATT-TC-TATCATCCACCCTTTCT--ACGACAT-AT--AGCACAA-TGAC---GGTG-----TTAACATATCATTTTA----TA-TTG--CCAA------TT-ACATC------AGAAATAA--ATT--ATAC-T-GTGTTGTTGTTC-A---AA-----AATG-TTCAA--C-T-CATTGCTAAA------A-AA-A-T---TCAC-TACC-CAC-TCG----TAC------------TACCAAAAA-CC---AACACTCTTCA-------------C-TCAAA-CACA----------GCCATCATGA--CTTGAAA-TTGACT---TCACCA-GACA--G----TATAGCA--ATATT-AAAACTTGCCTC----AGAGCAT-----CACCA--TTACT-------------------------TCTTTT-TC---AGATCT--T-AAAGC---------CC--AG----T-CA-AT---TTCTTCACAGA-----CAACTCTTA-CCCC--GAC
gi|5 : cC-CCCC-CCCCC--CACCCA---GG---GCACGGACCTGAATGATAAAAAAAAATCTTACAAAA--ATATTAA--TTCA-AAA-TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGTTTTTT-CTCA---T-ATTCTCATT-G-TTT-A--AA-TTCAG-----TCGA-TCT-----T-CTGCACAA-CCCAAAAT-CCC-CTGAGCAAAATGGCGC--GAT----C-CGCTGCA-----CAATCACTTTAT-TTATAT-CA-AAT-TT-C-TCG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--GCAAT---T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GAGTTTTTGTTCAA---AA-----A--G-TTCAA--C-TGCATTGTA---------A-AA-A-T---TCAC-TACCGGAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA-CA-A----------GCCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--AT---TATAG-A--ATATTAAAA--TTGCCT-----AGAGCAT-----CA-CA--TTCTT-------------------------CTTTTT-TCT--A-AT-T--T-AAGGC---------CC--AG-T--T-TA-AT---C--TGCACAGG----TCAA--CTTA-CCCC--GACGCAACT--GAA-ACTA-----------G-GGG--GG
gi|12 : caA-CTATTGAATGCCTA-TCT--CCAA-TAGAA-TATAAGATGTT--CTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TTT-----A-CTGCACAA-CCCAAATT-CCC-CTGAGCAAA-CGG-GC--GAT----C-CGCTGCA-----CAATCACTTTAT-TTATAT-CA-CATATC-T-T-G-AAA-gg
gi|2 : CAA-GAGA--TATGAGGTTTTT-CTGAGGTTCATCCTTATT-G-ATA-AGGA--ATCAG-----TCG--ATT-----T-C---GCAA-CC-AGATT-CCCGCTGAG-AAA-TGG-GGAAG------TACG-TG-A-----CAATCAA---ATAGTATAGGCACGAT-GC-T-T-G-AGA-AGTAGAGGA-TATTGT--TA--AGTCAGC--TTTT--A-GACATAAT--AGCA----TGAC---GGTG-----TTAA--TA--ATTTT-----CAGTTT--G-AT----T-TT-ACAT-------A---ATAA-GATT-GAGAC-TAGTGTTTTCGTTC-A---GA-----A--GGTTCAA--G-TGCATGTGT---------A-AA-A-TAATTCACCTATC-G---TCG----TAC------------GAC--AACA-GA---AA----TTTCA------------GCGTC-AA-CA-A----------GCCAGTA--A--GT--GAACTTG-GTG--T-A-CATGA-AGTGT---TATAG-AATAT-TT-AA-----GCCT-----AGAG-AT-----CA-CA--TTCTT-------------------------TA---T-TC---A-AT-TTGT-AAGGC---------CCAGAG-T--TGTAGAT---T--TG-AC-GG----T-AA--C-TATCCGG--AACGAGACCTGGAA-ATTG-----------G-GGA--GG
gi|9 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaataatgtcggtgtggcagaagttgcttggcattgtaaaagttggaaaaaattgacatgatcaaaaaacagaaatgattaaaaatatcttattgttaattttaacgcgaatgcagcaatattgaaaacattaaaacatacatataagcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtCATT-G-TTTTA--A--TTCGG-----TCGA-TCTACATGTACTGCACAA-CCTAAAAT-ATC-CTTTGCAAA-CGC-GC--GATC---T-C-CTGCACTTCTCAATCATTTTAT-T----T-CA-AAT-TTCT-T-G-AAA-AACAAGTGG-CAAT-TCCTAT-AT-TACC--CTTTACAAGACATGAT--AGCT-AA-CGGC---GGTG-----TTAA-GAA-CATTTTACCGGTA-TTT--GCAA----TATC-ATAT-------AG-AAAAG-GATT-GAGACTT-GTG
gi|7 : ttcatttccatctttatcatcaaatatttgttttcttaattacagtacacgtacatgaag-TTT-A--C--TTTAG-----TCGA-TCT-----A-CTGCACAA-CCCAAAAT-CCC-CTGAACAAA-CGG-GC--GAT----C-CCCTGCA------AATCATTCTAT-TTATAT-CA-AAT-TT-CGT-G-AAA-AATAAGCGA-TA-T-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AC-TGAC---GATG-----TTAA-ATA-CATTTT-----TA-TTC--GCAAT---T-TT-ACAT-------AG-AATGA-GATT-GAGAC-T-GTGTTTTTGTTC-----AA-----A--G-TTCAA--C-AGCATTGGT---------A-AACA-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTAA------------GCGTCAAA-CG-A----------GCCATGC-GA--GT--ATA-TTG-CT---T-ACCATGA-T--GT---CATAG-A--ATATT-AAA--TTGCCT-----AGAGCAT-----AA-CA--TTCTT-------------------------CTTTTT-TC-----AT-T--T-AAGGC---------CC--AG-T--T-T--AT---T--TGCAAAGG----TCAA--TTTACCCCC--GACGCAACT--GAA-ACTA-----------G-GAGNNNNNN-----NNN-NNN-NNN-----NNNNN------NNNNNN-NNNNNNNNNNN-NNNNNN--NNNN--NNNNNN-NNN----NNNNNN--NN-NNNTCGA-----TTGGTGCCCGTGggttgtttgagacttgtgggtttttaattggaggttggttttttttcgtcctaaagttcaactttattagtaaaaattcactactaatttgcaagtaaaaaaaaattca
gi|19 : -CGCTGCA-----CAATCACTTTAT-TTATAT-CA-Aa
gi|10 : tcA-TATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAG-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAAAGATT-GAGAC---GTGTTTTTG-------------------------------CAT-GGT---------A-AA-AAT---TCAC-TACC-GAC-TCG----CGC------------GAC--AAAA-CA---AA----TTTAT------------GCGTCAAA-CG-A----------GCCATCA-GA--GT----A-TTG-CT---T-ACCATGG-A--GT---CGTAG-A--ATATT-AAA--TTGCCT-----AGAGCAT-----CA-CA--C----------------------------------------------------AGGC---------CC--AG-T--T-TA-AT---T--TGCACAGG----TCAA--CTTAACCCC--AACGCAACT--GAA-ACTA-----------G-GGA--AGTC-----TACNNNN-NNN-----NNNNN------NNNNNN-NNNNNNNNNNN-NNNNNN--NNNN--NNNNNN-NNN----NNNNNN--NN-NNNTCGA-----TTGGTGCCCGT
gi|14 : ACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--CCAAG---T-TT-ACAT-------GG-AATAA-GATT-GAGAC-C-GTGTTTTTGTTT-A---AA-----A--G-TTCAC--C-TGCATTGGTA--------A-AA-A-T---TCAC-TACC-GAC-T
gi|6 : CATGATTTAGCA-AAATGACCGCGGTGGGGAGTTAA--TA-CATTTT-----TA-TTTTTGCAAACCCT-CT-ATATTATCATTAG-AATAAAGATTTGAAAC-T-GTGTTTGTTTTC-ACCCAATTTTTG--C-TTCAAAACGTGC-TTAGTTCGGAATACACAA-A-T---T-AC-TACC-GACCTCGGTTCCACC-----------GAC--AAAAACAGAAAA----TCTTAACATTGCCCGTCGCATC-AA-AA-ACCATTTTGAGGCCATC--GATCGTT-GAA-TTG-CTCGTT-ACCATGA-A--ATGTGTATAG-A--ATATT-AAA--TTGCCTGTCTTAGAG-A------CA-CAACTTCTT-------------------------TCTTTT-TCTTCA-ATGT--T-AAGGCTAAATCGGCCC--AG-T--T-TA--T---T--TGCACAGGGTCCTCAAA-TTTACCCCCACGACGCAACT--GAAGACTA-----------GCGGG--GGTC-----TAC-TGCACAA-----CAGATAAATTGTCGAT--CCTGCGATTTTATTCTTTTCCACAACACTTTTGGGT----TGTACCCTGTCAGCTTGACGTATTTGGTGCCC
gi|11 : TTTTAGTGC-A---AA-----T--A-TTCAA--C-TTCAATGCT---------A-AA-A-T---TCAC-TTCC-GAC-TTG----CACAGTGGCTGTCACGAC--AAAA-CA---AA----TTCTA------------AC----------A----------GCCATCA------------------------ACTATGC-A--AC---CATAG-G--ATATT-GAA--TTGCTC-----GGAGAATTTAATCA-CA--TTCTTCTTTTTCTTTTCTTCTTTTTCTTTTTTTTTT-TC---A-AT-T--T-AAGGC---------CC--AAAT--C-TA-AT---T--TGCACGGG----TAAA--CTTACCACC--GG---AGTT--GGA-A--AGGGGAGGGGGGG-GGG--GGTCCTAAGCAC-TGC-CGCACATACAGATG-----TCGATCAAATGCCA-TTT-TTCTGT--CACA--ACTGTC-GGTTGCATGTGCA--GT-AAATTGA-----TTGGTGCCT
gi|9 : TTTTCGTCC-T---AA-----A--G-TTCAA--C-TTTATTAGTA--------A-AA-A-T---TCAC-TACT-AAT-TTG----CAA------------G-T--AAAA-AA---AA----ATTCA------------
gi|13 : ttcatttccatctttatcatcaaatatttgttttcttaattacagtacacgtacatgaagcattgttttaattcggtcgatctacatgtactgcacaacctaaaatatcctttgcaaacgcgcgatctcctgcacttctcaatcattttatttcaaatttcttgaaaaacaagtggcaattcctatattaccctttacaagacatgatagctaacggcggtgttaagaacattttaccggtatttgcaatatcatatagaaaaggattgagacttgtgggttgtttgagacttgtgggtttttaattggaggttggttttTT-TC---A-ATAC--T-GACTC---------TC--AG-TAAT-CA-ATACAT--TGTAC-------TCAA--CTCATCCCT--GATGCAATT--GGC-CTTA-----------G-GGA--GGTC-----AAC-AGCACAC-----GGAATG-----TACATC-A-TGCGATTTT-T-CTTT--TACA--ACTTTT-AGT----TGTTCT--GT-ACGTTGA-----TTGGTGCC
gi|16 : -T--T-ATGGC---------TT--AA-T--T-CA-AT---T--TGCACGGG----TCAA--CTTACTCCC--AACG
gi|18 : aaattgacttgtgaaaatgtcacaTTC-TTCTTT--CACA--ACTTTC-GGT----TGTGCG--GT-GGCCTTA-----TTGGTG
gi|1 : --ATTTTT-GGT----TGTGCA--GT-AGATCGA-----CTGaacgtgagaa
gi|5 : cgttgttacataccgtggtccatcaatgccccccccccctctagagaaaatcatctgaattgttggtacttttactgggaagaacttatatatacaaacagtgtatacattcaaataattttaaataaaatttgttatttctttagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacaaggaacatgaagtcggtgcaaagttcctgccttgtaaaagtttgctaaccacgatcccacaacatcagcatgcgtatcaaaatacattatctgttatttaacatgcaggatattgataaacatacgtataattcaatgacataatttctccaaattatgagatgatgtggaatcccccccccccccaacacaaaaacacacacggacctgaatgataaaaaaatcttacaaaaatatattaattcaaaatcatttggaaataccggactattgatttccaatctttctaatagaatataagtttttctttcatcattctcatttgtttaatt--ATTTTG-GGT----TGTGCA--GA-AGATCGA-----CTGcccctgagcaaacgggcgatccgctgcacaatcactttatttatatcaaatttcttgaaaaataagcgaacattttatatccaccttctaaacatgatagcaaatgacggtggtttaatacattttatttgcaattttacatagaataagattgagactgtgcttttgttcaaaagttcaactgcattggtaaaaattcactaccgactcgtacgacaaaacaaatttcagcgtcaaacaagccatcagagtgaattgcttaccatgaaagttatagaatattaaattgcctagagcatcacatcttcttttatcaatttaaaggtccagtttaatttgcacaggtcaacttacccccgacgcaactgaaactaggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattggtgcccgtgtaa
gi|7 : cacccccccccccacccagggcacggacctgaatgataaaaaaaaatcttacaaaaatattaattcaaaatcatttggaaataccggactattgattcccaatctccaatagaatataagttttttctcatattctcattgtttaaatt--ATTTTG-GGT----TGTGCA--GT-AGATCGA-----CTcccctgagcaaaatggcgcgatccgctgcacaatcactttatttatatcaaatttctcgaaaaataagcgacattttatatccaccttctaagacatgatagcaaatgacggtgttaaatacattttatttgcaattttacatagaataagattgagactgagtttttgttcaaaaagttcaactgcattgtaaaaattcactaccggactcgtacgacaaaacaaatttcagcgtcaacaagccatcagagtgaattgcttaccatgaaattatagaatattaaaattgcctagagcatcacattcttcttttttctaatttaaggcccagtttaatctgcacaggtcaacttaccccgacgcaactgaaactagggggggg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAGTAAAGACCGTCCCCCATTGAGGTGAATAAATCTCTGAATTGTTGGTGAAAGATTTCTTTTCTGGGAGACGCTTAAACTTATAT
Alignments
lowQualScore : 111 1 1 2222 3333333 11 11 2222 111 33333333333333 1 111 111 11 11 11 1 11 1 11 111 11111 11111 11111111 1111 11111 1 11 11111 111111 1111 1 1111111 11111 11111111 111 222222222222 222222222222 1 11111111111 111 111 1111111 11111 11111 44444444444444444444444444 1 111111111 22222222222 111111 222222222222222222 111 1111 11111
lowQualScore : 1 777 0 0 2 7777 2222222 2 2 22 3 2 33 3 1111 666 44444444444444 0 0 7 444 8 0 444 33 3 3 33 3 33 0 33 3 3 0 8 8 11 6 6 7 44 111 5 5 5 22222 22222 5 66666666 5 1 5 5 5 5 0000 66 11111 4 1 777 5 5 0 5 11 5 66 66 55 4 4 777 44444 66 4 0 666666 4 55 6666 4 2 7777777 4 8 4 555 00000 11111111 3 55 3 1 666 3 55 333 666 3 7 666 3 3 3 8888 444444444444 55 4 777 8888 000000000000 2 0 66666666666 4 55 66 222 4 4 222 4 4 1111111 4 4 66 11111 4 3 11111 4 66 55555555555555555555555555 0 777 4 666 0 55 888888888 55 3 55 3 3 666 55 66 7777 55 4 55 66 4 4 4 11111111111 555555 444444444444444444 1 888 5 7 66 888 1 0000 999 88888 22222
lowQualScore : . ... . . . .... ....... . . .. . . .. . .... ... .............. . . . ... . . ... .. . . .. . .. . .. . . . . . .. . . . .. ... . . . ..... ..... . ........ . . . . . . .... .. ..... . . ... . . . . .. . .. .. .. . . ... ..... .. . . ...... . .. .... . . ....... . . . ... ..... ........ . .. . . ... . .. ... ... . . ... . . . .... ............ .. . ... .... ............ . . ........... . .. .. ... . . ... . . ....... . . .. ..... . . ..... . .. .......................... . ... . ... . .. ......... .. . .. . . ... .. .. .... .. . .. .. . . . ........... ...... .................. . ... . . .. ... . .... ... ..... .....
lowQualScore : 0 555 0 0 5 8888 5555555 5 5 55 2 5 88 2 2222 000 22222222222222 7 0 3 000 0 8 000 22 2 2 22 2 88 0 88 2 2 0 0 0 00 7 7 5 88 777 7 0 0 88888 55555 0 55555555 0 4 0 0 0 0 6666 11 11111 4 9 888 0 0 0 0 99 0 11 11 55 0 0 000 00000 33 0 8 333333 0 55 5555 0 0 0000000 0 0 0 444 00000 00000000 6 00 6 4 444 6 00 666 444 6 3 444 6 6 6 5555 555555555555 55 0 000 5555 555555555555 9 0 88888888888 4 66 11 444 4 4 222 4 4 8888888 4 4 11 11111 4 9 11111 4 11 66666666666666666666666666 9 000 0 333 9 00 222222222 00 6 00 6 6 444 00 33 7777 00 3 00 11 4 4 4 11111111111 333333 444444444444444444 9 000 0 0 99 888 2 6666 888 55555 55555
consensus : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAAAG--TTG-------CTAACCACGATCCCANAACATCA-GCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTAG-G-GG-----------GGTCT-----ACTGC-CAC-----CGGA-----TGTCGATCAC-TGCGATTTT-TTCTTT--CACAAC---TTTCGGTTG----TGCN--GT-AGN-TCGA-----TTGGTGCCCGTG
Reference ( family-1340 ) : ATACAAGGAANATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAA-G--TTG-------CTAACCACGATCCCACAACATCA-GCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAA---CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTAG-G-GG-----------GGTCN-----ACTGC-CGC-----CGGA-----TGTCGATCAN-TGCGATTTT-TTCTTT--CACAAC---TTTCGGTTG----TGCA--GT-AGA-TCGA-----TTGGTGCCCGTG
gi|1 : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTG-CCTTGTAAA-AGTTTG-------CTAACCACGATCCCACAACATCA-GCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CAT-A-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACAAA---AACACACACGGACCTGAATGATAAAAAAA--TCTTACAAAAATATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTTCCAA-TCTTTCTAA-TAGAA-TATAAGTTTTTCTTTCA---TCATTCTCATTTG-TTT-A--A--TTCAG-----TCGA-TCTAC------TGCACAA-CCAAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGAACATT-T--TAT-ATCCACC--TTCT--AA-ACATGAT--AGCA-AA-TGAC---GGTGG----TTTA-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAA-GATT-GAGAC-T-GTGCTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-AAT---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-AA-GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TC---------------------------TTCTTT---TATC-A-AT-T--TAAA--------GGTCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTAG-G-GG-----------NNNNN-----NNNNN-NNN-----NNNN-----NNNNNNNNNN-NNNNNNNNN-NNNNNN--NNNNNN---NNNNNNNNN----NNNN--NN-NNNNTCGA-----TTGGTGCCCGTG
gi|10 : cgttgttacataccgtggtccatcaatgccccccccccctctagagaaaatcatctgaattgttggtacttttactgggaagaacttatatatacaaacagtgtatacattcaaataattttaaataaaatttgttatttctttagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-TATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAG-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAAAGATT-GAGAC---GTGTTTTTG-------------------------------C---AT--GG--T---A---AA-AAT---TCAC-TACC-GAC-TCG----CGC------------GAC--AAAA-CA---AA----TTTAT------------GCGTCAAA--------CG-AG-CCATCA-GA--GT----A-TTG-CT---T-ACCATGG-A--GT---CGTAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--C----------------------------------------------------A---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTAACCC--CAACGCAACT--GAA-ACTAG-G-GA-----------AGTCT-----ACNNN-NNN-----NNNN-----NNNNNNNNNN-NNNNNNNNN-NNNNNN--NNNNNN---NNNNNNNNN----NNNN--NN-NNN-TCGA-----TTGGTGCCCGTtaa
gi|11 : TTTTAGTGC-A---AA-----T--A-TTCAA--C-TTC---AAT-GC--T---A---AA-A-T---TCAC-TTCC-GAC-TTG----CACAGTGGCTGTCACGAC--AAAA-CA---AA----TTCTA------------AC-----------------AG-CCATCA------------------------ACTATGC-A--AC---CATAG-GATATT-GAA--TTGCT-----C-GGAGAATTTAATCA-CA--TTCTTCTTTTTCTTTTCTTCTTTTTCTTTTTTTTT---T-TC-A-AT-T--TAA---------GGCCC--AAAT--C-TA-AT---T--TGCACG-GGTA----AA--CTTACCAC--CGG---AGTT--GGA-A--AG-G-GGAGGGGGGGGGGGGTCCTAAGCACTGC-CGCACATACAGA-----TGTCGATCAAATGCCATTTT-T-CTGT--CACAAC---TGTCGGTTGCATGTGCA--GT-AAA-TTGA-----TTGGTGCCTG
gi|12 : A-CTATTGAATGCCTA-TCT--CCAA-TAGAA-TATAAGATGTT--CTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TTTAC------TGCACAA-CCCAAATT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CACATATCTTG-AAA-
gi|13 : T---T-TC-A-ATAC--TGA---------CTCTC--AG-TAAT-CA-ATACAT--TGTAC----TC----AA--CTCATCCC--TGATGCAATT--GGC-CTTAG-G-GA-----------GGTCA-----ACAGCACAC-----GGAA-----TGTACATCA--TGCGATTTT-T-CTTT--TACAAC---TTTTAGTTG----TTCT--GT-ACG-TTGA-----TTGGTGCC
gi|14 : ACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--CCAAG---T-TT-ACAT-------GG-AATAA-GATT-GAGAC-C-GTGTTTTTGTTT-A---AA-----A--G-TTCAC--C-TGC---ATT-GG--TA--A---AA-A-T---TCAC-TACC-GAC-T
gi|16 : -T--TAT---------GGCTT--AA-T--T-CA-AT---T--TGCACG-GGTC----AA--CTTACTCC--CAACG
gi|17 : aaattgacttgtgaaaatgtcacaTTATGAGATGAT-GTGGAATCCCCCCACCCCACCCCCAACACACA---AACACACACGGACCTGA
gi|18 : TTC-TTCTTT--CACAAC---TTTCGGTTG----TGCG--GT-GGC-CTTA-----TTGGTGAACGTG
gi|19 : --TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAagaa
gi|2 : ATAATGTCGGTGTGGCAGAAGTTGCTTGGCATTGTAAAAG--TTGGAAAAAATTGAC-ATGATCAAAAAACAGAA---ATGATTA--AAAATATCTTAT-TGTTAATTTTAACGCGAATGCAGCAATATTGAAAA---CATTA-----
gi|2 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaCAA-GAGA--TATGAGGTTTTT-CTGAGGTTCATCCTTATT-G-ATA-AGGA--ATCAG-----TCGA-TTT----------CGCAA-CC-AGATT-CCCGCTGAG-AAA-TGG-G-----GAAGTACG-TG-A-----CAA-TCA----AATAGTATAGGCACGATGCTTG-AGA-AGTAGAGGA-TATTGT--TA--AGTCAGC--TTTT--A-GACATAAT--AGCA----TGAC---GGTG-----TTAA--TA--ATTTT-----CAGTTT--G-AT----T-TT-ACAT-------A---ATAA-GATT-GAGAC-TAGTGTTTTCGTTC-A---GA-----A--GGTTCAA--G-TGC---ATG-TG--T---A---AA-A-TAATTCACCTATC-G---TCG----TAC------------GAC--AACA-GA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCAGTA--A--GT--GAACTTG-GTG--T-A-CATGA-AGTGT---TATAG-AATATT-TAA----GCC-----T-AGAG-AT-----CA-CA--TTC-------------------------TTTA------T-TC-A-AT-TTGTAA---------GGCCCAGAG-T--TGTAGAT---T--TG-AC--GGT-----AA--C-TATCCG--GAACGAGACCTGGAA-ATTGG-G-GA-----------GGaaacatacatataagcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtcaagagatatgaggtttttctgaggttcatccttattgataaggaatcagtcgatttcgcaaccagattcccgctgagaaatggggaagtacgtgacaatcaaatagtataggcacgatgcttgagaagtagaggatattgttaagtcagcttttagacataatagcatgacggtgttaataattttcagtttgattttacataataagattgagactagtgttttcgttcagaaggttcaagtgcatgtgtaaaataattcacctatcgtcgtacgacaacagaaatttcagcgtcaacaagccagtaagtgaacttggtgtacatgaagtgttatagaatatttaagcctagagatcacattctttattcaatttgtaaggcccagagttgtagatttgacggtaactatccggaacgagacctggaaattggggagg
gi|3 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaataatgtcggtgtggcagaagttgcttggcattgtaaaagttggaaaaaattgacatgatcaaaaaacagaaatgattaaaaatatcttattgttaattttaacgcgaatgcagcaatattgaaaacattaaaacatacatataagcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAA-G--TTG-------CTAACCACGATCCCAAAACATCA-GCATGCGTATCAAAATACATTATCTGTTA--TTTA-C----ATGCTG-AATATTGATAAAAACATTAAACTACATATAATTCAATGACATAGTTTCTCCAAATTATGAGATGATTGTGGA--CCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTT-CAAAA-TATATTAA--TTCATAAA--TCATTTAGAA-T-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGTTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCG--TCTTC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-TGG-GC----G----TCGCTGCA-----CAA-TCAATTTATTTATAT---CAAATTT-TTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATAAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-AAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AAT-TT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTAG-G-GG-----------GGTCT-----ACTGC-CAC-----CGGA-----T-TCGATCCC-TGCGATTTT-TTCTTT--CACAAC---TTTTGGTTG----TGCA--GT-AGA-TCGA-----TTGGTGCCTGTG
gi|4 : CCCCCC---CC-CCCCCAACACACAAAGAACACACACGGACCTGGAAGAGAAAAAAAA-TC-TACAAAA-TA-ATCAATCTCCA-AAAACTCA-TTGGAAATAACCGGACCTATTGATTCCCACTTCC--CCAACTAGAACTATAACGTTTTTTCTCA---TCATACTCATT-GCTTC-G--ATCTTCAGTAAACTCGACTCTTA------TGCACAATCCCAAAATCCCC-CT--GCAAA-CGG-GCACCAAA--TTCCCTCCA-----CAATTCAC-TTATTTATAT---ATCATTTCTTGCAAACAATAAGCGATCATT-TC-TATCATCCACCCTTTCT--ACGACAT-AT--AGCACAA-TGAC---GGTG-----TTAACATATCATTTTA----TA-TTG--CCAA------TT-ACATC------AGAAATAA--ATT--ATAC-T-GTGTTGTTGTTC-A---AA-----AATG-TTCAA--C-T-C---ATT-GC--TAAAA---AA-A-T---TCAC-TACC-CAC-TCG----TAC------------TACCAAAAA-CC---AACACTCTTCA-------------C-TCAAA--------CACAG-CCATCATGA--CTTGAAA-TTGACT---TCACCA-GACA--G----TATAGCAATATT-AAAACTTGCC-----TCAGAGCAT-----CACCA--TTA-------------------------CTTCTTT---T-TC-AGATCT--TAA---------AGCCC--AG----T-CA-AT---TTCTTCACA-GA-C----AACTCTTA-CCC--CGAC
gi|5 : caCCC---CC-CCCCC--CACCCA---GG---GCACGGACCTGAATGATAAAAAAAAATCTTACAAAA--ATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAG-TTTTTTCTCA---T-ATTCTCATT-G-TTT-A--AA-TTCAG-----TCGA-TCTTC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAAATGGCGC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTCG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--GCAAT---T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GAGTTTTTGTTCAA---AA-----A--G-TTCAA--C-TGC---ATT-GT--A---A---AA-A-T---TCAC-TACCGGAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--AT---TATAG-AATATTAAAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTCTTTT---T-TCTA-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---C--TGCACA-GGTC----AA--CTTA-CCC--CGACGCAACT--GAA-ACTAG-G-GG-----------GG
gi|6 : caCATGATTTAGCA-AAATGACCGCGGTGGGGAGTTAA--TA-CATTTT-----TA-TTTTTGCAAACCCT-CT-ATATTATCATTAG-AATAAAGATTTGAAAC-T-GTGTTTGTTTTC-ACCCAATTTTTG--C-TTCAAAACGTGCTTAGTTCGGAAT---ACACAA-A-T---T-AC-TACC-GACCTCGGTTCCACC-----------GAC--AAAAACAGAAAA----TCTTAACATTGCCCGTCGCATCAAAAACCATTTTG-AGGCCATC--GATCGTT-GAA-TTG-CTCGTT-ACCATGA-A--ATGTGTATAG-AATATT-AAA--TTGCCTGTCTT-AGAG-A------CA-CAACTTC-------------------------TTTCTTTTTCT-TC-A-ATGT--TAAGGCTAAATCGGCCC--AG-T--T-T--AT---T--TGCACAGGGTCCTCAAA--TTTACCCCCACGACGCAACT--GAAGACTAGCG-GG-----------GGTCT-----ACTGCACAA-----CAGATAAATTGTCGATC-C-TGCGATTTTATTCTTTTCCACAACACTTTTGGGTTG----TACCCTGTCAGC-TTGACGTATTTGGTGCCCGgg
gi|7 : -TTT-A--C--TTTAG-----TCGA-TCTAC------TGCACAA-CCCAAAAT-CCC-CTGAACAAA-CGG-GC----GA--TCCCCTGCA------AA-TCATTCTATTTATAT---CAAATTTCGTG-AAA-AATAAGCGA-TATT-T---AT-ATCCACC--TTCT--AAGACATGAT--AGCA-AC-TGAC---GATG-----TTAA-ATA-CATTTT-----TA-TTC--GCAA----T-TTTACAT-------AG-AATGA-GATT-GAGAC-T-GTGTTTTTGTTC-----AA-----A--G-TTCAA--C-AGC---ATT-GG--T---A---AACA-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTAA------------GCGTCAAA--------CG-AG-CCATGC-GA--GT--ATA-TTG-CT---T-ACCATGA-T--GT---CATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----AA-CA--TTC-------------------------TTCTTTT---T-TC---AT-T--TAA---------GGCCC--AG-T--T-T--AT---T--TGCAAA-GGTC----AA--TTTACCCC--CGACGCAACT--GAA-ACTAG-GAGN-----------NNNNN-----NNNNN-NNN-----NNNN-----NNNNNNNNNN-NNNNNNNNN-NNNNNN--NNNNNN---NNNNNNNNN----NNNN--NN-NNN-TCGA-----TTGGTGCCCGTG
gi|8 : ATACAAGGAAAATGAAGTCGGTC---CA-AAGTT-CCTGGCCTTGTAAAAG--TTG-------CTAACCACGATCCCACAACATCAAGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGC-T-GATATTGATA----CAT-A-----CATATATTTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAa
gi|9 : cccccccccccctcctccctagagaaataccaggtaaatgatcatctgaattgttggtacttttactggaagaacttaatatacaaacagtgtatacataatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaataaagtttttgttatttctgtagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATT-G-TTTTA--A--TTCGG-----TCGA-TCTACATGTACTGCACAA-CCTAAAAT-ATC-CTTTGCAAA-CGC-GC----GA--TCTCCTGCACTTCTCAA-TCATTTTATT----T---CAAATTTCTTG-AAA-AACAAGTGG-CAAT-TCCTAT-AT-TACC--CTTTACAAGACATGAT--AGCT-AA-CGGC---GGTG-----TTAA-GAA-CATTTTACCGGTA-TTT--GCAA----TATC-ATAT-------AG-AAAAG-GATT-GAGACTT-GTG
gi|9 : ttcatttccatctttatcatcaaatatttgttttcttaattacagtacacgtacatgaagTTTTCGTCC-T---AA-----A--G-TTCAA--C-TTT---ATT-AG--TA--A---AA-A-T---TCAC-TACT-AAT-TTG----CAA------------G-T--AAAA-AA---AA----ATTCA------------ggttgtttgagacttgtgggtttttaattggaggttggttttttttcgtcctaaagttcaactttattagtaaaaattcactactaatttgcaagtaaaaaaaaattca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGTAAAGACCGTCCCCCATTGAGGTGAATAAATCTCTGAATTGTTGGTGAAAGATTTCTTTTCTGGGAGACGCTTAAACTTATAT
Alignments
lowQualScore : 111 1 1 1 3333333 1 11 2222 111 11 22222 1 111 111 11 11 11 1 11 1 11 111 11111 11111 11111111 1111 11111 1 11 11111 111111 1111 1 1111111 11111 11111111 111 222222222222 222222222222 1 11111111111 111 111 1111111 11111 11111 44444444444444444444444444 1 111111111 22222222222 11111 222222222222222222 111 1111 11111
lowQualScore : 777 0 0 2 3 0 2222222 2 1 0 2 3 2 33 3 1111 666 66 33 66 55555 0 0 7 444 8 0 444 33 3 3 33 3 33 0 33 3 3 0 8 8 11 6 6 7 44 111 5 5 5 22222 22222 5 66666666 5 1 5 5 5 5 0000 66 11111 4 1 777 5 5 0 5 11 5 66 66 55 4 4 777 44444 66 4 0 666666 4 55 6666 4 2 7777777 4 8 4 555 00000 11111111 3 55 3 1 666 3 55 333 666 3 7 666 3 3 3 8888 444444444444 55 4 777 8888 000000000000 2 0 66666666666 4 55 66 222 4 4 222 4 4 1111111 4 4 66 11111 4 3 11111 4 66 55555555555555555555555555 0 777 4 666 0 55 888888888 55 3 55 3 3 666 55 66 7777 55 4 55 66 4 11111111111 4 4 44444 000000000000000000 1 666 2 5 0 66 888 1 0000 66 1 66666 22222
lowQualScore : ... . . . . . ....... . . . . . . .. . .... ... .. .. .. ..... . . . ... . . ... .. . . .. . .. . .. . . . . . .. . . . .. ... . . . ..... ..... . ........ . . . . . . .... .. ..... . . ... . . . . .. . .. .. .. . . ... ..... .. . . ...... . .. .... . . ....... . . . ... ..... ........ . .. . . ... . .. ... ... . . ... . . . .... ............ .. . ... .... ............ . . ........... . .. .. ... . . ... . . ....... . . .. ..... . . ..... . .. .......................... . ... . ... . .. ......... .. . .. . . ... .. .. .... .. . .. .. . ........... . . ..... .................. . ... . . . .. ... . .... .. . ..... .....
lowQualScore : 555 0 0 5 2 0 5555555 5 0 0 5 2 5 88 2 2222 000 55 88 55 00000 7 0 3 000 0 8 000 22 2 2 22 2 88 0 88 2 2 0 0 0 00 7 7 5 88 777 7 0 0 88888 55555 0 55555555 0 4 0 0 0 0 6666 11 11111 4 9 888 0 0 0 0 99 0 11 11 55 0 0 000 00000 33 0 8 333333 0 55 5555 0 0 0000000 0 0 0 444 00000 00000000 6 00 6 4 444 6 00 666 444 6 3 444 6 6 6 5555 555555555555 55 0 000 5555 555555555555 9 0 88888888888 4 66 11 444 4 4 222 4 4 8888888 4 4 11 11111 4 9 11111 4 11 66666666666666666666666666 9 000 0 333 9 00 222222222 00 6 00 6 6 444 00 33 7777 00 3 00 11 4 11111111111 4 4 33333 333333333333333333 9 999 3 0 9 99 888 2 6666 99 0 99999 55555
consensus : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCANAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----TGTCGATC-ACTGCGATTTT-TTCTTT--CACAAC---TTTCGGT----TGTG--CNGT-AGN-TCGA-----TTGGTGCCCGTG
Reference ( family-1340 ) : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCANAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----TGTCGATC-ACTGCGATTTT-TTCTTT--CACAAC---TTTCGGT----TGTG--CNGT-AGN-TCGA-----TTGGTGCCCGTG
gi|1 : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTG-CCTTGTAAAAGTTTG-------CTAACCACGATCCCACAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CAT-A-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACAAA---AACACACACGGACCTGAATGATAAAAAAA--TCTTACAAAAATATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTTCCAA-TCTTTCTAA-TAGAA-TATAAGTTTTTCTTTCA---TCATTCTCATTTG-TTT-A--A--TTCAG-----TCGA-TCTAC------TGCACAA-CCAAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGAACATT-T--TAT-ATCCACC--TTCT--AA-ACATGAT--AGCA-AA-TGAC---GGTGG----TTTA-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAA-GATT-GAGAC-T-GTGCTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-AAT---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-AA-GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TC---------------------------TTCTTT---TATC-A-AT-T--TAAA--------GGTCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGNNNN-----NNNNNN-NNN-----NNNN-----NNNNNNNN-NNNNNNNNNNN-NNNNNN--NNNNNN---NNNNNNN----NNNN--NNNN-NNNNTCGA-----TTGGTGCCCGTG
gi|10 : cgttgttacataccgtggtccatcaatgccccccccccctctagagaaaatcatctgaattgttggtacttttactgggaagaacttatatatacaaacagtgtatacattcaaataattttaaataaaatttgttatttctttagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-TATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAG-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAAAGATT-GAGAC---GTGTTTTTG-------------------------------C---AT--GG--T---A---AA-AAT---TCAC-TACC-GAC-TCG----CGC------------GAC--AAAA-CA---AA----TTTAT------------GCGTCAAA--------CG-AG-CCATCA-GA--GT----A-TTG-CT---T-ACCATGG-A--GT---CGTAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--C----------------------------------------------------A---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTAACCC--CAACGCAACT--GAA-ACTA-----------G-G-GAAGTC-----TACNNN-NNN-----NNNN-----NNNNNNNN-NNNNNNNNNNN-NNNNNN--NNNNNN---NNNNNNN----NNNN--NNNN-NNN-TCGA-----TTGGTGCCCGTtaa
gi|11 : TTTTAGTGC-A---AA-----T--A-TTCAA--C-TTC---AAT-GC--T---A---AA-A-T---TCAC-TTCC-GAC-TTG----CACAGTGGCTGTCACGAC--AAAA-CA---AA----TTCTA------------AC-----------------AG-CCATCA------------------------ACTATGC-A--AC---CATAG-GATATT-GAA--TTGCT-----C-GGAGAATTTAATCA-CA--TTCTTCTTTTTCTTTTCTTCTTTTTCTTTTTTTTT---T-TC-A-AT-T--TAA---------GGCCC--AAAT--C-TA-AT---T--TGCACG-GGTA----AA--CTTACCAC--CGG---AGTT--GGA-A--AGGGGAGGGGGGG-G-GGGGTCCTAAGCACTGC-CGCACATACAGA-----TGTCGATCAAATGCCA-TTT-TTCTGT--CACAAC---TGTCGGTTGCATGTG--CAGT-AAA-TTGA-----TTGGTGCCTG
gi|12 : A-CTATTGAATGCCTA-TCT--CCAA-TAGAA-TATAAGATGTT--CTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TTTAC------TGCACAA-CCCAAATT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CACATATCTTG-AAA-
gi|13 : T---T-TC-A-ATAC--TGA---------CTCTC--AG-TAAT-CA-ATACAT--TGTAC----TC----AA--CTCATCCC--TGATGCAATT--GGC-CTTA-----------G-G-GAGGTC-----AACAGCACAC-----GGAA-----TGTACATC-A-TGCGATTTT-T-CTTT--TACAAC---TTTTAGT----TGTT--CTGT-ACG-TTGA-----TTGGTGCC
gi|14 : ACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--CCAAG---T-TT-ACAT-------GG-AATAA-GATT-GAGAC-C-GTGTTTTTGTTT-A---AA-----A--G-TTCAC--C-TGC---ATT-GG--TA--A---AA-A-T---TCAC-TACC-GAC-T
gi|16 : -T--TAT---------GGCTT--AA-T--T-CA-AT---T--TGCACG-GGTC----AA--CTTACTCC--CAACG
gi|17 : aaattgacttgtgaaaatgtcacaTTATGAGATGAT-GTGGAATCCCCCCACCCCACCCCCAACACACA---AACACACACGGACCTGA
gi|18 : TTC-TTCTTT--CACAAC---TTTCGGT----TGTG--CGGT-GGC-CTTA-----TTGGTGAACGTG
gi|19 : --TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAagaa
gi|2 : ATAATGTCGGTGTGGCAGAAGTTGCTTGGCATTGTAAAAGTT-GGAAAAAATTGA-CATGATCAAAAAACAGA-A--ATGATTA--AAAATATCTTAT-TGTTAATTTTAACGCGAATGCAGCAATATTGA-AAA--CATTA-----
gi|2 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaCAA-GAGA--TATGAGGTTTTT-CTGAGGTTCATCCTTATT-G-ATA-AGGA--ATCAG-----TCGA-TTT----------CGCAA-CC-AGATT-CCCGCTGAG-AAA-TGG-G-----GAAGTACG-TG-A-----CAA-TCA----AATAGTATAGGCACGATGCTTG-AGA-AGTAGAGGA-TATTGT--TA--AGTCAGC--TTTT--A-GACATAAT--AGCA----TGAC---GGTG-----TTAA--TA--ATTTT-----CAGTTT--G-AT----T-TT-ACAT-------A---ATAA-GATT-GAGAC-TAGTGTTTTCGTTC-A---GA-----A--GGTTCAA--G-TGC---ATG-TG--T---A---AA-A-TAATTCACCTATC-G---TCG----TAC------------GAC--AACA-GA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCAGTA--A--GT--GAACTTG-GTG--T-A-CATGA-AGTGT---TATAG-AATATT-TAA----GCC-----T-AGAG-AT-----CA-CA--TTC-------------------------TTTA------T-TC-A-AT-TTGTAA---------GGCCCAGAG-T--TGTAGAT---T--TG-AC--GGT-----AA--C-TATCCG--GAACGAGACCTGGAA-ATTG-----------G-G-GAGGaaacatacatataagcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtcaagagatatgaggtttttctgaggttcatccttattgataaggaatcagtcgatttcgcaaccagattcccgctgagaaatggggaagtacgtgacaatcaaatagtataggcacgatgcttgagaagtagaggatattgttaagtcagcttttagacataatagcatgacggtgttaataattttcagtttgattttacataataagattgagactagtgttttcgttcagaaggttcaagtgcatgtgtaaaataattcacctatcgtcgtacgacaacagaaatttcagcgtcaacaagccagtaagtgaacttggtgtacatgaagtgttatagaatatttaagcctagagatcacattctttattcaatttgtaaggcccagagttgtagatttgacggtaactatccggaacgagacctggaaattggggagg
gi|3 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaataatgtcggtgtggcagaagttgcttggcattgtaaaagttggaaaaaattgacatgatcaaaaaacagaaatgattaaaaatatcttattgttaattttaacgcgaatgcagcaatattgaaaacattaaaacatacatataagcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAA-GTT-G-------CTAACCACGATCCCAAAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTA-C----ATGCTG-AATATTGATAAAAACATTAAACTACATATAATTCAATGACATAGTTTCTCCAAATTATGAGATGATTGTGGA--CCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTT-CAAAA-TATATTAA--TTCATAAA--TCATTTAGAA-T-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGTTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCG--TCTTC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-TGG-GC----G----TCGCTGCA-----CAA-TCAATTTATTTATAT---CAAATTT-TTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATAAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-AAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AAT-TT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----T-TCGATC-CCTGCGATTTT-TTCTTT--CACAAC---TTTTGGT----TGTG--CAGT-AGA-TCGA-----TTGGTGCCTGTG
gi|4 : CCCCCC---CC-CCCCCAACACACAAAGAACACACACGGACCTGGAAGAGAAAAAAAA-TC-TACAAAA-TA-ATCAATCTCCA-AAAACTCA-TTGGAAATAACCGGACCTATTGATTCCCACTTCC--CCAACTAGAACTATAACGTTTTTTCTCA---TCATACTCATT-GCTTC-G--ATCTTCAGTAAACTCGACTCTTA------TGCACAATCCCAAAATCCCC-CT--GCAAA-CGG-GCACCAAA--TTCCCTCCA-----CAATTCAC-TTATTTATAT---ATCATTTCTTGCAAACAATAAGCGATCATT-TC-TATCATCCACCCTTTCT--ACGACAT-AT--AGCACAA-TGAC---GGTG-----TTAACATATCATTTTA----TA-TTG--CCAA------TT-ACATC------AGAAATAA--ATT--ATAC-T-GTGTTGTTGTTC-A---AA-----AATG-TTCAA--C-T-C---ATT-GC--TAAAA---AA-A-T---TCAC-TACC-CAC-TCG----TAC------------TACCAAAAA-CC---AACACTCTTCA-------------C-TCAAA--------CACAG-CCATCATGA--CTTGAAA-TTGACT---TCACCA-GACA--G----TATAGCAATATT-AAAACTTGCC-----TCAGAGCAT-----CACCA--TTA-------------------------CTTCTTT---T-TC-AGATCT--TAA---------AGCCC--AG----T-CA-AT---TTCTTCACA-GA-C----AACTCTTA-CCC--CGAC
gi|5 : caCCC---CC-CCCCC--CACCCA---GG---GCACGGACCTGAATGATAAAAAAAAATCTTACAAAA--ATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAG-TTTTTTCTCA---T-ATTCTCATT-G-TTT-A--AA-TTCAG-----TCGA-TCTTC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAAATGGCGC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTCG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--GCAAT---T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GAGTTTTTGTTCAA---AA-----A--G-TTCAA--C-TGC---ATT-GT--A---A---AA-A-T---TCAC-TACCGGAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--AT---TATAG-AATATTAAAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTCTTTT---T-TCTA-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---C--TGCACA-GGTC----AA--CTTA-CCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGG
gi|6 : caCATGATTTAGCA-AAATGACCGCGGTGGGGAGTTAA--TA-CATTTT-----TA-TTTTTGCAAACCCT-CT-ATATTATCATTAG-AATAAAGATTTGAAAC-T-GTGTTTGTTTTC-ACCCAATTTTTG--C-TTCAAAACGTGCTTAGTTCGGAAT---ACACAA-A-T---T-AC-TACC-GACCTCGGTTCCACC-----------GAC--AAAAACAGAAAA----TCTTAACATTGCCCGTCGCATCAAAAACCATTTTG-AGGCCATC--GATCGTT-GAA-TTG-CTCGTT-ACCATGA-A--ATGTGTATAG-AATATT-AAA--TTGCCTGTCTT-AGAG-A------CA-CAACTTC-------------------------TTTCTTTTTCT-TC-A-ATGT--TAAGGCTAAATCGGCCC--AG-T--T-T--AT---T--TGCACAGGGTCCTCAAA--TTTACCCCCACGACGCAACT--GAAGACTA-----------GCG-GGGGTC-----TACTGCACAA-----CAGATAAATTGTCGATC--CTGCGATTTTATTCTTTTCCACAACACTTTTGGGT----TGTACCCTGTCAGC-TTGACGTATTTGGTGCCCGgg
gi|7 : -TTT-A--C--TTTAG-----TCGA-TCTAC------TGCACAA-CCCAAAAT-CCC-CTGAACAAA-CGG-GC----GA--TCCCCTGCA------AA-TCATTCTATTTATAT---CAAATTTCGTG-AAA-AATAAGCGA-TATT-T---AT-ATCCACC--TTCT--AAGACATGAT--AGCA-AC-TGAC---GATG-----TTAA-ATA-CATTTT-----TA-TTC--GCAA----T-TTTACAT-------AG-AATGA-GATT-GAGAC-T-GTGTTTTTGTTC-----AA-----A--G-TTCAA--C-AGC---ATT-GG--T---A---AACA-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTAA------------GCGTCAAA--------CG-AG-CCATGC-GA--GT--ATA-TTG-CT---T-ACCATGA-T--GT---CATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----AA-CA--TTC-------------------------TTCTTTT---T-TC---AT-T--TAA---------GGCCC--AG-T--T-T--AT---T--TGCAAA-GGTC----AA--TTTACCCC--CGACGCAACT--GAA-ACTA-----------G-GAGNNNNN-----NNNNNN-NNN-----NNNN-----NNNNNNNN-NNNNNNNNNNN-NNNNNN--NNNNNN---NNNNNNN----NNNN--NNNN-NNN-TCGA-----TTGGTGCCCGTG
gi|8 : ATACAAGGAAAATGAAGTCGGTC---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCACAACATCAAGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGC-T-GATATTGAT--A--CA-TA-----CATATATTTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAa
gi|9 : cccccccccccctcctccctagagaaataccaggtaaatgatcatctgaattgttggtacttttactggaagaacttaatatacaaacagtgtatacataatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaataaagtttttgttatttctgtagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATT-G-TTTTA--A--TTCGG-----TCGA-TCTACATGTACTGCACAA-CCTAAAAT-ATC-CTTTGCAAA-CGC-GC----GA--TCTCCTGCACTTCTCAA-TCATTTTATT----T---CAAATTTCTTG-AAA-AACAAGTGG-CAAT-TCCTAT-AT-TACC--CTTTACAAGACATGAT--AGCT-AA-CGGC---GGTG-----TTAA-GAA-CATTTTACCGGTA-TTT--GCAA----TATC-ATAT-------AG-AAAAG-GATT-GAGACTT-GTG
gi|9 : ttcatttccatctttatcatcaaatatttgttttcttaattacagtacacgtacatgaagTTTTCGTCC-T---AA-----A--G-TTCAA--C-TTT---ATT-AG--TA--A---AA-A-T---TCAC-TACT-AAT-TTG----CAA------------G-T--AAAA-AA---AA----ATTCA------------ggttgtttgagacttgtgggtttttaattggaggttggttttttttcgtcctaaagttcaactttattagtaaaaattcactactaatttgcaagtaaaaaaaaattca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGTAAAGACCGTCCCCCATTGAGGTGAATAAATCTCTGAATTGTTGGTGAAAGATTTCTTTTCTGGGAGACGCTTAAACTTATAT
Alignments
lowQualScore : 111 1 1 1 3333333 1 11 2222 111 11 22222 1 111 111 11 11 11 1 11 1 11 111 11111 11111 11111111 1111 11111 1 11 11111 111111 1111 1 1111111 11111 11111111 111 222222222222 222222222222 1 11111111111 111 111 1111111 11111 11111 44444444444444444444444444 1 111111111 22222222222 11111 222222222222222222 111 1111 11111
lowQualScore : 777 0 0 2 3 0 2222222 2 1 0 2 3 2 33 3 1111 666 66 33 66 55555 0 0 7 444 8 0 444 33 3 3 33 3 33 0 33 3 3 0 8 8 11 6 6 7 44 111 5 5 5 22222 22222 5 66666666 5 1 5 5 5 5 0000 66 11111 4 1 777 5 5 0 5 11 5 66 66 55 4 4 777 44444 66 4 0 666666 4 55 6666 4 2 7777777 4 8 4 555 00000 11111111 3 55 3 1 666 3 55 333 666 3 7 666 3 3 3 8888 444444444444 55 4 777 8888 000000000000 2 0 66666666666 4 55 66 222 4 4 222 4 4 1111111 4 4 66 11111 4 3 11111 4 66 55555555555555555555555555 0 777 4 666 0 55 888888888 55 3 55 3 3 666 55 66 7777 55 4 55 66 4 11111111111 4 4 44444 000000000000000000 1 666 2 5 0 66 888 1 0000 66 1 66666 22222
lowQualScore : ... . . . . . ....... . . . . . . .. . .... ... .. .. .. ..... . . . ... . . ... .. . . .. . .. . .. . . . . . .. . . . .. ... . . . ..... ..... . ........ . . . . . . .... .. ..... . . ... . . . . .. . .. .. .. . . ... ..... .. . . ...... . .. .... . . ....... . . . ... ..... ........ . .. . . ... . .. ... ... . . ... . . . .... ............ .. . ... .... ............ . . ........... . .. .. ... . . ... . . ....... . . .. ..... . . ..... . .. .......................... . ... . ... . .. ......... .. . .. . . ... .. .. .... .. . .. .. . ........... . . ..... .................. . ... . . . .. ... . .... .. . ..... .....
lowQualScore : 555 0 0 5 2 0 5555555 5 0 0 5 2 5 88 2 2222 000 55 88 55 00000 7 0 3 000 0 8 000 22 2 2 22 2 88 0 88 2 2 0 0 0 00 7 7 5 88 777 7 0 0 88888 55555 0 55555555 0 4 0 0 0 0 6666 11 11111 4 9 888 0 0 0 0 99 0 11 11 55 0 0 000 00000 33 0 8 333333 0 55 5555 0 0 0000000 0 0 0 444 00000 00000000 6 00 6 4 444 6 00 666 444 6 3 444 6 6 6 5555 555555555555 55 0 000 5555 555555555555 9 0 88888888888 4 66 11 444 4 4 222 4 4 8888888 4 4 11 11111 4 9 11111 4 11 66666666666666666666666666 9 000 0 333 9 00 222222222 00 6 00 6 6 444 00 33 7777 00 3 00 11 4 11111111111 4 4 33333 333333333333333333 9 999 3 0 9 99 888 2 6666 99 0 99999 55555
consensus : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCANAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----TGTCGATC-ACTGCGATTTT-TTCTTT--CACAAC---TTTCGGT----TGTG--CNGT-AGN-TCGA-----TTGGTGCCCGTG
Reference ( family-1340 ) : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCANAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----TGTCGATC-ACTGCGATTTT-TTCTTT--CACAAC---TTTCGGT----TGTG--CNGT-AGN-TCGA-----TTGGTGCCCGTG
gi|1 : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTG-CCTTGTAAAAGTTTG-------CTAACCACGATCCCACAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CAT-A-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACAAA---AACACACACGGACCTGAATGATAAAAAAA--TCTTACAAAAATATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTTCCAA-TCTTTCTAA-TAGAA-TATAAGTTTTTCTTTCA---TCATTCTCATTTG-TTT-A--A--TTCAG-----TCGA-TCTAC------TGCACAA-CCAAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGAACATT-T--TAT-ATCCACC--TTCT--AA-ACATGAT--AGCA-AA-TGAC---GGTGG----TTTA-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAA-GATT-GAGAC-T-GTGCTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-AAT---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-AA-GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TC---------------------------TTCTTT---TATC-A-AT-T--TAAA--------GGTCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGNNNN-----NNNNNN-NNN-----NNNN-----NNNNNNNN-NNNNNNNNNNN-NNNNNN--NNNNNN---NNNNNNN----NNNN--NNNN-NNNNTCGA-----TTGGTGCCCGTG
gi|10 : cgttgttacataccgtggtccatcaatgccccccccccctctagagaaaatcatctgaattgttggtacttttactgggaagaacttatatatacaaacagtgtatacattcaaataattttaaataaaatttgttatttctttagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-TATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAG-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAAAGATT-GAGAC---GTGTTTTTG-------------------------------C---AT--GG--T---A---AA-AAT---TCAC-TACC-GAC-TCG----CGC------------GAC--AAAA-CA---AA----TTTAT------------GCGTCAAA--------CG-AG-CCATCA-GA--GT----A-TTG-CT---T-ACCATGG-A--GT---CGTAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--C----------------------------------------------------A---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTAACCC--CAACGCAACT--GAA-ACTA-----------G-G-GAAGTC-----TACNNN-NNN-----NNNN-----NNNNNNNN-NNNNNNNNNNN-NNNNNN--NNNNNN---NNNNNNN----NNNN--NNNN-NNN-TCGA-----TTGGTGCCCGTtaa
gi|11 : TTTTAGTGC-A---AA-----T--A-TTCAA--C-TTC---AAT-GC--T---A---AA-A-T---TCAC-TTCC-GAC-TTG----CACAGTGGCTGTCACGAC--AAAA-CA---AA----TTCTA------------AC-----------------AG-CCATCA------------------------ACTATGC-A--AC---CATAG-GATATT-GAA--TTGCT-----C-GGAGAATTTAATCA-CA--TTCTTCTTTTTCTTTTCTTCTTTTTCTTTTTTTTT---T-TC-A-AT-T--TAA---------GGCCC--AAAT--C-TA-AT---T--TGCACG-GGTA----AA--CTTACCAC--CGG---AGTT--GGA-A--AGGGGAGGGGGGG-G-GGGGTCCTAAGCACTGC-CGCACATACAGA-----TGTCGATCAAATGCCA-TTT-TTCTGT--CACAAC---TGTCGGTTGCATGTG--CAGT-AAA-TTGA-----TTGGTGCCTG
gi|12 : A-CTATTGAATGCCTA-TCT--CCAA-TAGAA-TATAAGATGTT--CTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TTTAC------TGCACAA-CCCAAATT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CACATATCTTG-AAA-
gi|13 : T---T-TC-A-ATAC--TGA---------CTCTC--AG-TAAT-CA-ATACAT--TGTAC----TC----AA--CTCATCCC--TGATGCAATT--GGC-CTTA-----------G-G-GAGGTC-----AACAGCACAC-----GGAA-----TGTACATC-A-TGCGATTTT-T-CTTT--TACAAC---TTTTAGT----TGTT--CTGT-ACG-TTGA-----TTGGTGCC
gi|14 : ACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--CCAAG---T-TT-ACAT-------GG-AATAA-GATT-GAGAC-C-GTGTTTTTGTTT-A---AA-----A--G-TTCAC--C-TGC---ATT-GG--TA--A---AA-A-T---TCAC-TACC-GAC-T
gi|16 : -T--TAT---------GGCTT--AA-T--T-CA-AT---T--TGCACG-GGTC----AA--CTTACTCC--CAACG
gi|17 : aaattgacttgtgaaaatgtcacaTTATGAGATGAT-GTGGAATCCCCCCACCCCACCCCCAACACACA---AACACACACGGACCTGA
gi|18 : TTC-TTCTTT--CACAAC---TTTCGGT----TGTG--CGGT-GGC-CTTA-----TTGGTGAACGTG
gi|19 : --TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAagaa
gi|2 : ATAATGTCGGTGTGGCAGAAGTTGCTTGGCATTGTAAAAGTT-GGAAAAAATTGA-CATGATCAAAAAACAGA-A--ATGATTA--AAAATATCTTAT-TGTTAATTTTAACGCGAATGCAGCAATATTGA-AAA--CATTA-----
gi|2 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaCAA-GAGA--TATGAGGTTTTT-CTGAGGTTCATCCTTATT-G-ATA-AGGA--ATCAG-----TCGA-TTT----------CGCAA-CC-AGATT-CCCGCTGAG-AAA-TGG-G-----GAAGTACG-TG-A-----CAA-TCA----AATAGTATAGGCACGATGCTTG-AGA-AGTAGAGGA-TATTGT--TA--AGTCAGC--TTTT--A-GACATAAT--AGCA----TGAC---GGTG-----TTAA--TA--ATTTT-----CAGTTT--G-AT----T-TT-ACAT-------A---ATAA-GATT-GAGAC-TAGTGTTTTCGTTC-A---GA-----A--GGTTCAA--G-TGC---ATG-TG--T---A---AA-A-TAATTCACCTATC-G---TCG----TAC------------GAC--AACA-GA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCAGTA--A--GT--GAACTTG-GTG--T-A-CATGA-AGTGT---TATAG-AATATT-TAA----GCC-----T-AGAG-AT-----CA-CA--TTC-------------------------TTTA------T-TC-A-AT-TTGTAA---------GGCCCAGAG-T--TGTAGAT---T--TG-AC--GGT-----AA--C-TATCCG--GAACGAGACCTGGAA-ATTG-----------G-G-GAGGaaacatacatataagcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtcaagagatatgaggtttttctgaggttcatccttattgataaggaatcagtcgatttcgcaaccagattcccgctgagaaatggggaagtacgtgacaatcaaatagtataggcacgatgcttgagaagtagaggatattgttaagtcagcttttagacataatagcatgacggtgttaataattttcagtttgattttacataataagattgagactagtgttttcgttcagaaggttcaagtgcatgtgtaaaataattcacctatcgtcgtacgacaacagaaatttcagcgtcaacaagccagtaagtgaacttggtgtacatgaagtgttatagaatatttaagcctagagatcacattctttattcaatttgtaaggcccagagttgtagatttgacggtaactatccggaacgagacctggaaattggggagg
gi|3 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaataatgtcggtgtggcagaagttgcttggcattgtaaaagttggaaaaaattgacatgatcaaaaaacagaaatgattaaaaatatcttattgttaattttaacgcgaatgcagcaatattgaaaacattaaaacatacatataagcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAA-GTT-G-------CTAACCACGATCCCAAAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTA-C----ATGCTG-AATATTGATAAAAACATTAAACTACATATAATTCAATGACATAGTTTCTCCAAATTATGAGATGATTGTGGA--CCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTT-CAAAA-TATATTAA--TTCATAAA--TCATTTAGAA-T-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGTTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCG--TCTTC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-TGG-GC----G----TCGCTGCA-----CAA-TCAATTTATTTATAT---CAAATTT-TTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATAAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-AAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AAT-TT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----T-TCGATC-CCTGCGATTTT-TTCTTT--CACAAC---TTTTGGT----TGTG--CAGT-AGA-TCGA-----TTGGTGCCTGTG
gi|4 : CCCCCC---CC-CCCCCAACACACAAAGAACACACACGGACCTGGAAGAGAAAAAAAA-TC-TACAAAA-TA-ATCAATCTCCA-AAAACTCA-TTGGAAATAACCGGACCTATTGATTCCCACTTCC--CCAACTAGAACTATAACGTTTTTTCTCA---TCATACTCATT-GCTTC-G--ATCTTCAGTAAACTCGACTCTTA------TGCACAATCCCAAAATCCCC-CT--GCAAA-CGG-GCACCAAA--TTCCCTCCA-----CAATTCAC-TTATTTATAT---ATCATTTCTTGCAAACAATAAGCGATCATT-TC-TATCATCCACCCTTTCT--ACGACAT-AT--AGCACAA-TGAC---GGTG-----TTAACATATCATTTTA----TA-TTG--CCAA------TT-ACATC------AGAAATAA--ATT--ATAC-T-GTGTTGTTGTTC-A---AA-----AATG-TTCAA--C-T-C---ATT-GC--TAAAA---AA-A-T---TCAC-TACC-CAC-TCG----TAC------------TACCAAAAA-CC---AACACTCTTCA-------------C-TCAAA--------CACAG-CCATCATGA--CTTGAAA-TTGACT---TCACCA-GACA--G----TATAGCAATATT-AAAACTTGCC-----TCAGAGCAT-----CACCA--TTA-------------------------CTTCTTT---T-TC-AGATCT--TAA---------AGCCC--AG----T-CA-AT---TTCTTCACA-GA-C----AACTCTTA-CCC--CGAC
gi|5 : caCCC---CC-CCCCC--CACCCA---GG---GCACGGACCTGAATGATAAAAAAAAATCTTACAAAA--ATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAG-TTTTTTCTCA---T-ATTCTCATT-G-TTT-A--AA-TTCAG-----TCGA-TCTTC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAAATGGCGC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTCG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--GCAAT---T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GAGTTTTTGTTCAA---AA-----A--G-TTCAA--C-TGC---ATT-GT--A---A---AA-A-T---TCAC-TACCGGAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--AT---TATAG-AATATTAAAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTCTTTT---T-TCTA-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---C--TGCACA-GGTC----AA--CTTA-CCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGG
gi|6 : caCATGATTTAGCA-AAATGACCGCGGTGGGGAGTTAA--TA-CATTTT-----TA-TTTTTGCAAACCCT-CT-ATATTATCATTAG-AATAAAGATTTGAAAC-T-GTGTTTGTTTTC-ACCCAATTTTTG--C-TTCAAAACGTGCTTAGTTCGGAAT---ACACAA-A-T---T-AC-TACC-GACCTCGGTTCCACC-----------GAC--AAAAACAGAAAA----TCTTAACATTGCCCGTCGCATCAAAAACCATTTTG-AGGCCATC--GATCGTT-GAA-TTG-CTCGTT-ACCATGA-A--ATGTGTATAG-AATATT-AAA--TTGCCTGTCTT-AGAG-A------CA-CAACTTC-------------------------TTTCTTTTTCT-TC-A-ATGT--TAAGGCTAAATCGGCCC--AG-T--T-T--AT---T--TGCACAGGGTCCTCAAA--TTTACCCCCACGACGCAACT--GAAGACTA-----------GCG-GGGGTC-----TACTGCACAA-----CAGATAAATTGTCGATC--CTGCGATTTTATTCTTTTCCACAACACTTTTGGGT----TGTACCCTGTCAGC-TTGACGTATTTGGTGCCCGgg
gi|7 : -TTT-A--C--TTTAG-----TCGA-TCTAC------TGCACAA-CCCAAAAT-CCC-CTGAACAAA-CGG-GC----GA--TCCCCTGCA------AA-TCATTCTATTTATAT---CAAATTTCGTG-AAA-AATAAGCGA-TATT-T---AT-ATCCACC--TTCT--AAGACATGAT--AGCA-AC-TGAC---GATG-----TTAA-ATA-CATTTT-----TA-TTC--GCAA----T-TTTACAT-------AG-AATGA-GATT-GAGAC-T-GTGTTTTTGTTC-----AA-----A--G-TTCAA--C-AGC---ATT-GG--T---A---AACA-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTAA------------GCGTCAAA--------CG-AG-CCATGC-GA--GT--ATA-TTG-CT---T-ACCATGA-T--GT---CATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----AA-CA--TTC-------------------------TTCTTTT---T-TC---AT-T--TAA---------GGCCC--AG-T--T-T--AT---T--TGCAAA-GGTC----AA--TTTACCCC--CGACGCAACT--GAA-ACTA-----------G-GAGNNNNN-----NNNNNN-NNN-----NNNN-----NNNNNNNN-NNNNNNNNNNN-NNNNNN--NNNNNN---NNNNNNN----NNNN--NNNN-NNN-TCGA-----TTGGTGCCCGTG
gi|8 : ATACAAGGAAAATGAAGTCGGTC---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCACAACATCAAGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGC-T-GATATTGAT--A--CA-TA-----CATATATTTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAa
gi|9 : cccccccccccctcctccctagagaaataccaggtaaatgatcatctgaattgttggtacttttactggaagaacttaatatacaaacagtgtatacataatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaataaagtttttgttatttctgtagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATT-G-TTTTA--A--TTCGG-----TCGA-TCTACATGTACTGCACAA-CCTAAAAT-ATC-CTTTGCAAA-CGC-GC----GA--TCTCCTGCACTTCTCAA-TCATTTTATT----T---CAAATTTCTTG-AAA-AACAAGTGG-CAAT-TCCTAT-AT-TACC--CTTTACAAGACATGAT--AGCT-AA-CGGC---GGTG-----TTAA-GAA-CATTTTACCGGTA-TTT--GCAA----TATC-ATAT-------AG-AAAAG-GATT-GAGACTT-GTG
gi|9 : ttcatttccatctttatcatcaaatatttgttttcttaattacagtacacgtacatgaagTTTTCGTCC-T---AA-----A--G-TTCAA--C-TTT---ATT-AG--TA--A---AA-A-T---TCAC-TACT-AAT-TTG----CAA------------G-T--AAAA-AA---AA----ATTCA------------ggttgtttgagacttgtgggtttttaattggaggttggttttttttcgtcctaaagttcaactttattagtaaaaattcactactaatttgcaagtaaaaaaaaattca
blockSeqs : TGG G G G A . GAAAAAA C A A G T C AT A GCGA AGC TA AA TT AACTA T A ACC A AAG AA T A T T TC T AC T A A C T . C C A TT GGT . C T GGA TAAAC C ACATGTAC T C C G A C ACCA AG CTTCT T C AGG C C T G CC C CT AC TT C A CGC GGGAG CA T ACCGGT G TT ACCC A T TATCATT A A T TA ACCC TTTTTG G AA G T TTA C AA AAA CAC C A AAT C G C GTTC AGTGGCTGTCAC CA A GAA CACT ACATTGCCCGTC G A AACCATTTTG G TG TC TGA C A CGT C C ATGTG C A AC TGTCT C C TTAAT C AC CTTCTTTTTCTTTTCTTCTTTTTCTT TTC . AG A TG GGCTAAATC AG A AA G G ACA TC AG CTCA CT A CA TG G GGGGAGGGGGG C A CTAAG ACAACAGATAAAT N AAA N A TC ACT N TGCA CC N CAGC CGTAT
blockSeqs : . . . G A . . C A . G T C . A . TG A . TT . . . . . . A T A T T . . . T A . . . . . . G TT . . . . ATC . . AC . C . . . . . . . . C . . . . . C . . . . . . . . A . AT . . G . T C . A . TT AA AAT . . . G . . . A . . . . . . . . C . . . . . G A CAC . G . TG . . G . . GTGT . . . . . A . . . C . . TA C . . . . . . . . . A . . C . . . . . . . CGCACATACAGA G NN T . . . C . . A NNN .
blockSeqs : . . . G . . . . C . . . . . . . T T . T . . . . . A . . . . . . . . . . . . . . . T TT . . . . AA . . TC . C . . . . . . . . A . . . . . . . . . . . . . . A . T . . T . . . . . . C A T . . . G . . . A . . . . . . . . . . . . . . G A CG . G . G . . . . . GT . . . . . C . . . C . . A G . . . . . . . . . G . . T . . . . . . . ACACGGAA G CC T . . . T . . T AAA .
blockSeqs : . . . . . . . . G T . . . . A . . TA . C . . . . . . . . C . . . . . . . . . . . . . . A . C . . . . . . . . . T A A . . . G . . . . . . . . . . . . . . . . . . G A CA . G . G . . . . . AC . . . . . C . . . A . . A . . . . . . . . . . G . . C . . . . . . . NNNNNNN G NN T . . . C . . G ACG .
blockSeqs : . . . . . . . . A . . TC . C . . . . . . . . C . . . . . . . . . . . . . . A . T . . . . . . . . . T A A . . . G . . . . . . . . . . . . . . . . . . A . CA . G . G . . . . . GT . . . . . C . . . C . . A . . . . . . . . . . A . . T . . . . . . . CACCGGA N A N . . . T . . A GGC .
blockSeqs : . . . C . . AC . T . . . . . . . . T . . . . . . . . . . . . . . A . T . . . . . . . . . T A A . . . G . . . . . . . . . . . . . . . . . . G . CA . G . A . . . . . AT . . . . . C . . . C . . A . . . . . . . . . . A . . C . . . . . . . NNNNNNN . C . . . . G . . T AGA .
blockSeqs : . . A . . . . . . . . . . . . . T . . . . . . . . . . . . . . G . T . . . . . . . . . T A A . . . G . . . . . . . . . . . . . . . . . . . . CG . . . . . . . . . GT . . . . . . . . . C . . A . . . . . . . . . . A . . C . . . . . . . . . N . . N NNN .
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . T T A . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . A . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : ** ***** T***** GT***** C************************* ********* AGA**
originalCons : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCANAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----TGTCGATC-ACTGCGATTTT-TTCTTT--CACAAC---TTTCGGT----TGTG--CNGT-AGN-TCGA-----TTGGTGCCCGTG
finalCons : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCANAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTTT-----A-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-AGT-----TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----TGTCGATC-ACTGCGATTTT-TTCTTT--CACAAC---TTTCGGT----TGTG--CNGTAGA--TCGA-----TTGGTGCCCGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGTAAAGACCGTCCCCCATTGAGGTGAATAAATCTCTGAATTGTTGGTGAAAGATTTCTTTTCTGGGAGACGCTTAAACTTATAT
Alignments
lowQualScore : 111 1 1 1 3333333 1 11 2222 111 11 22222 1 111 111 11 11 11 1 11 1 11 111 11111 11111 11111111 1111 11111 1 11 11111 111111 1111 1 1111111 11111 11111111 111 222222222222 222222222222 1 11111111111 111 111 1111111 11111 11111 44444444444444444444444444 1 111111111 22222222222 11111 222222222222222222 111 1111 11111
lowQualScore : 777 0 0 2 3 0 2222222 2 1 0 2 3 2 33 3 1111 666 66 33 66 55555 0 0 7 444 8 0 444 33 3 3 33 3 33 0 33 3 3 0 8 8 11 6 6 7 44 111 5 5 5 22222 22222 5 66666666 5 1 5 5 5 5 0000 66 11111 4 1 777 5 5 0 5 11 5 66 66 55 4 4 777 44444 66 4 0 666666 4 55 6666 4 2 7777777 4 8 4 555 00000 11111111 3 55 3 1 666 3 55 333 666 3 7 666 3 3 3 8888 444444444444 55 4 777 8888 000000000000 2 0 66666666666 4 55 66 222 4 4 222 4 4 1111111 4 4 66 11111 4 3 11111 4 66 55555555555555555555555555 0 777 4 666 0 55 888888888 55 3 55 3 3 666 55 66 7777 55 4 55 66 4 11111111111 4 4 44444 000000000000000000 1 666 2 5 0 66 888 1 0000 66 1 88888 22222
lowQualScore : ... . . . . . ....... . . . . . . .. . .... ... .. .. .. ..... . . . ... . . ... .. . . .. . .. . .. . . . . . .. . . . .. ... . . . ..... ..... . ........ . . . . . . .... .. ..... . . ... . . . . .. . .. .. .. . . ... ..... .. . . ...... . .. .... . . ....... . . . ... ..... ........ . .. . . ... . .. ... ... . . ... . . . .... ............ .. . ... .... ............ . . ........... . .. .. ... . . ... . . ....... . . .. ..... . . ..... . .. .......................... . ... . ... . .. ......... .. . .. . . ... .. .. .... .. . .. .. . ........... . . ..... .................. . ... . . . .. ... . .... .. . ..... .....
lowQualScore : 555 0 0 5 2 0 5555555 5 0 0 5 2 5 88 2 2222 000 55 88 55 00000 7 0 3 000 0 8 000 22 2 2 22 2 88 0 88 2 2 0 0 0 00 7 7 5 88 777 7 0 0 88888 55555 0 55555555 0 4 0 0 0 0 6666 11 11111 4 9 888 0 0 0 0 99 0 11 11 55 0 0 000 00000 33 0 8 333333 0 55 5555 0 0 0000000 0 0 0 444 00000 00000000 6 00 6 4 444 6 00 666 444 6 3 444 6 6 6 5555 555555555555 55 0 000 5555 555555555555 9 0 88888888888 4 66 11 444 4 4 222 4 4 8888888 4 4 11 11111 4 9 11111 4 11 66666666666666666666666666 9 000 0 333 9 00 222222222 00 6 00 6 6 444 00 33 7777 00 3 00 11 4 11111111111 4 4 33333 333333333333333333 9 999 3 0 9 99 888 2 6666 99 0 55555 55555
consensus : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCANAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----TGTCGATC-ACTGCGATTTT-TTCTTT--CACAAC---TTTCGGT----TGTG--CNGT-AGN-TCGA-----TTGGTGCCCGTG
Reference ( family-1340 ) : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCANAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CATTA-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTTACAAAA-TATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGNTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TCTNC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CG-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----TGTCGATC-ACTGCGATTTT-TTCTTT--CACAAC---TTTCGGT----TGTG--CNGT-AGA-TCGA-----TTGGTGCCCGTG
gi|1 : ATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTG-CCTTGTAAAAGTTTG-------CTAACCACGATCCCACAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGCAG-GATATTGATAAA--CAT-A-----CGTATAATTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAATCCCCCC---CC-CCCCCAACACAAA---AACACACACGGACCTGAATGATAAAAAAA--TCTTACAAAAATATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTTCCAA-TCTTTCTAA-TAGAA-TATAAGTTTTTCTTTCA---TCATTCTCATTTG-TTT-A--A--TTCAG-----TCGA-TCTAC------TGCACAA-CCAAAAAT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTTG-AAA-AATAAGCGAACATT-T--TAT-ATCCACC--TTCT--AA-ACATGAT--AGCA-AA-TGAC---GGTGG----TTTA-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAA-GATT-GAGAC-T-GTGCTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-AAT---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTCAAA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-AA-GT---TATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TC---------------------------TTCTTT---TATC-A-AT-T--TAAA--------GGTCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGNNNN-----NNNNNN-NNN-----NNNN-----NNNNNNNN-NNNNNNNNNNN-NNNNNN--NNNNNN---NNNNNNN----NNNN--NNNN-NNNNTCGA-----TTGGTGCCCGTG
gi|10 : cgttgttacataccgtggtccatcaatgccccccccccctctagagaaaatcatctgaattgttggtacttttactgggaagaacttatatatacaaacagtgtatacattcaaataattttaaataaaatttgttatttctttagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-TATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAG-ATA-CATTTT------A-TTT--GCAA----T-TTTACAT-------AG-AATAAAGATT-GAGAC---GTGTTTTTG-------------------------------C---AT--GG--T---A---AA-AAT---TCAC-TACC-GAC-TCG----CGC------------GAC--AAAA-CA---AA----TTTAT------------GCGTCAAA--------CG-AG-CCATCA-GA--GT----A-TTG-CT---T-ACCATGG-A--GT---CGTAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--C----------------------------------------------------A---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTAACCC--CAACGCAACT--GAA-ACTA-----------G-G-GAAGTC-----TACNNN-NNN-----NNNN-----NNNNNNNN-NNNNNNNNNNN-NNNNNN--NNNNNN---NNNNNNN----NNNN--NNNN-NNN-TCGA-----TTGGTGCCCGTtaa
gi|11 : TTTTAGTGC-A---AA-----T--A-TTCAA--C-TTC---AAT-GC--T---A---AA-A-T---TCAC-TTCC-GAC-TTG----CACAGTGGCTGTCACGAC--AAAA-CA---AA----TTCTA------------AC-----------------AG-CCATCA------------------------ACTATGC-A--AC---CATAG-GATATT-GAA--TTGCT-----C-GGAGAATTTAATCA-CA--TTCTTCTTTTTCTTTTCTTCTTTTTCTTTTTTTTT---T-TC-A-AT-T--TAA---------GGCCC--AAAT--C-TA-AT---T--TGCACG-GGTA----AA--CTTACCAC--CGG---AGTT--GGA-A--AGGGGAGGGGGGG-G-GGGGTCCTAAGCACTGC-CGCACATACAGA-----TGTCGATCAAATGCCA-TTT-TTCTGT--CACAAC---TGTCGGTTGCATGTG--CAGT-AAA-TTGA-----TTGGTGCCTG
gi|12 : A-CTATTGAATGCCTA-TCT--CCAA-TAGAA-TATAAGATGTT--CTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCGA-TTTAC------TGCACAA-CCCAAATT-CCC-CTGAGCAAA-CGG-GC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CACATATCTTG-AAA-
gi|13 : T---T-TC-A-ATAC--TGA---------CTCTC--AG-TAAT-CA-ATACAT--TGTAC----TC----AA--CTCATCCC--TGATGCAATT--GGC-CTTA-----------G-G-GAGGTC-----AACAGCACAC-----GGAA-----TGTACATC-A-TGCGATTTT-T-CTTT--TACAAC---TTTTAGT----TGTT--CTGT-ACG-TTGA-----TTGGTGCC
gi|14 : ACC--TTCT--AAGACATGAT--AGCA-AA-GAGC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--CCAAG---T-TT-ACAT-------GG-AATAA-GATT-GAGAC-C-GTGTTTTTGTTT-A---AA-----A--G-TTCAC--C-TGC---ATT-GG--TA--A---AA-A-T---TCAC-TACC-GAC-T
gi|16 : -T--TAT---------GGCTT--AA-T--T-CA-AT---T--TGCACG-GGTC----AA--CTTACTCC--CAACG
gi|17 : aaattgacttgtgaaaatgtcacaTTATGAGATGAT-GTGGAATCCCCCCACCCCACCCCCAACACACA---AACACACACGGACCTGA
gi|18 : TTC-TTCTTT--CACAAC---TTTCGGT----TGTG--CGGT-GGC-CTTA-----TTGGTGAACGTG
gi|19 : --TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAagaa
gi|2 : ATAATGTCGGTGTGGCAGAAGTTGCTTGGCATTGTAAAAGTT-GGAAAAAATTGA-CATGATCAAAAAACAGA-A--ATGATTA--AAAATATCTTAT-TGTTAATTTTAACGCGAATGCAGCAATATTGA-AAA--CATTA-----
gi|2 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaCAA-GAGA--TATGAGGTTTTT-CTGAGGTTCATCCTTATT-G-ATA-AGGA--ATCAG-----TCGA-TTT----------CGCAA-CC-AGATT-CCCGCTGAG-AAA-TGG-G-----GAAGTACG-TG-A-----CAA-TCA----AATAGTATAGGCACGATGCTTG-AGA-AGTAGAGGA-TATTGT--TA--AGTCAGC--TTTT--A-GACATAAT--AGCA----TGAC---GGTG-----TTAA--TA--ATTTT-----CAGTTT--G-AT----T-TT-ACAT-------A---ATAA-GATT-GAGAC-TAGTGTTTTCGTTC-A---GA-----A--GGTTCAA--G-TGC---ATG-TG--T---A---AA-A-TAATTCACCTATC-G---TCG----TAC------------GAC--AACA-GA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCAGTA--A--GT--GAACTTG-GTG--T-A-CATGA-AGTGT---TATAG-AATATT-TAA----GCC-----T-AGAG-AT-----CA-CA--TTC-------------------------TTTA------T-TC-A-AT-TTGTAA---------GGCCCAGAG-T--TGTAGAT---T--TG-AC--GGT-----AA--C-TATCCG--GAACGAGACCTGGAA-ATTG-----------G-G-GAGGaaacatacatataagcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtcaagagatatgaggtttttctgaggttcatccttattgataaggaatcagtcgatttcgcaaccagattcccgctgagaaatggggaagtacgtgacaatcaaatagtataggcacgatgcttgagaagtagaggatattgttaagtcagcttttagacataatagcatgacggtgttaataattttcagtttgattttacataataagattgagactagtgttttcgttcagaaggttcaagtgcatgtgtaaaataattcacctatcgtcgtacgacaacagaaatttcagcgtcaacaagccagtaagtgaacttggtgtacatgaagtgttatagaatatttaagcctagagatcacattctttattcaatttgtaaggcccagagttgtagatttgacggtaactatccggaacgagacctggaaattggggagg
gi|3 : tcgttagttatagagtggataagtaaagaccgtcccccattgaggtgaataaatctctgaattgttggtgaaagatttcttttctgggagacgcttaaacttatatatagtaaataattcattaccaataataaatatcatagagatatgttggtatattttttagatatgtattctcgaatgaaagatatttatgatacacagtaacattactcaggccctataaatgtgtaaatggcagtcgtgattccgcaaaggcatacatagagaataaatttaataatgtcggtgtggcagaagttgcttggcattgtaaaagttggaaaaaattgacatgatcaaaaaacagaaatgattaaaaatatcttattgttaattttaacgcgaatgcagcaatattgaaaacattaaaacatacatataagcaactgtaatttggagggatgtggggggtcaggtgtagaactacgaacgcgtatcgccagccacccccattcacgacggtactcgaagtaaataaatctgataaaaaaagttaaacaagtgattgaggggagtgagagggaggtgtATACAAGGAACATGAAGTCGGTG---CA-AAGTT-CCTGGCCTTGTAAA-GTT-G-------CTAACCACGATCCCAAAACATC-AGCATGCGTATCAAAATACATTATCTGTTA--TTTA-C----ATGCTG-AATATTGATAAAAACATTAAACTACATATAATTCAATGACATAGTTTCTCCAAATTATGAGATGATTGTGGA--CCCCCC---CC-CCCCCAACACACA---AACACACACGGACCTGAATGATAAAAAAAA-TCTT-CAAAA-TATATTAA--TTCATAAA--TCATTTAGAA-T-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAGTTTTTTTCTCA---TCATTCTCATT-G-TTT-A--A--TTCAG-----TCG--TCTTC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAA-TGG-GC----G----TCGCTGCA-----CAA-TCAATTTATTTATAT---CAAATTT-TTG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATAAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CATTTT-----TA-TTT--GCAA----T-TT-ACAT-------AG-AATAA-GATT-AAGAC-T-GTGTTTTTGTTC-A---AA-----A--G-TTCAA--C-TGC---ATT-GG--T---A---AA-A-T---TCAC-TACC-GAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--GT---TATAG-AAT-TT-AAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTTCTTT---T-TC-A-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---T--TGCACA-GGTC----AA--CTTACCCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGGTC-----TACTGC-CAC-----CGGA-----T-TCGATC-CCTGCGATTTT-TTCTTT--CACAAC---TTTTGGT----TGTG--CAGT-AGA-TCGA-----TTGGTGCCTGTG
gi|4 : CCCCCC---CC-CCCCCAACACACAAAGAACACACACGGACCTGGAAGAGAAAAAAAA-TC-TACAAAA-TA-ATCAATCTCCA-AAAACTCA-TTGGAAATAACCGGACCTATTGATTCCCACTTCC--CCAACTAGAACTATAACGTTTTTTCTCA---TCATACTCATT-GCTTC-G--ATCTTCAGTAAACTCGACTCTTA------TGCACAATCCCAAAATCCCC-CT--GCAAA-CGG-GCACCAAA--TTCCCTCCA-----CAATTCAC-TTATTTATAT---ATCATTTCTTGCAAACAATAAGCGATCATT-TC-TATCATCCACCCTTTCT--ACGACAT-AT--AGCACAA-TGAC---GGTG-----TTAACATATCATTTTA----TA-TTG--CCAA------TT-ACATC------AGAAATAA--ATT--ATAC-T-GTGTTGTTGTTC-A---AA-----AATG-TTCAA--C-T-C---ATT-GC--TAAAA---AA-A-T---TCAC-TACC-CAC-TCG----TAC------------TACCAAAAA-CC---AACACTCTTCA-------------C-TCAAA--------CACAG-CCATCATGA--CTTGAAA-TTGACT---TCACCA-GACA--G----TATAGCAATATT-AAAACTTGCC-----TCAGAGCAT-----CACCA--TTA-------------------------CTTCTTT---T-TC-AGATCT--TAA---------AGCCC--AG----T-CA-AT---TTCTTCACA-GA-C----AACTCTTA-CCC--CGAC
gi|5 : caCCC---CC-CCCCC--CACCCA---GG---GCACGGACCTGAATGATAAAAAAAAATCTTACAAAA--ATATTAA--TTCA-AAA--TCATTTGGAAAT-ACCGGA-CTATTGATTCCCAA-TCT--CCAA-TAGAA-TATAAG-TTTTTTCTCA---T-ATTCTCATT-G-TTT-A--AA-TTCAG-----TCGA-TCTTC------TGCACAA-CCCAAAAT-CCC-CTGAGCAAAATGGCGC----GA--TCCGCTGCA-----CAA-TCACTTTATTTATAT---CAAATTTCTCG-AAA-AATAAGCGA-CATT-T--TAT-ATCCACC--TTCT--AAGACATGAT--AGCA-AA-TGAC---GGTG-----TTAA-ATA-CA-TTT-----TA-TTT--GCAAT---T-TT-ACAT-------AG-AATAA-GATT-GAGAC-T-GAGTTTTTGTTCAA---AA-----A--G-TTCAA--C-TGC---ATT-GT--A---A---AA-A-T---TCAC-TACCGGAC-TCG----TAC------------GAC--AAAA-CA---AA----TTTCA------------GCGTC-AA--------CA-AG-CCATCA-GA--GT--GAA-TTG-CT---T-ACCATGA-A--AT---TATAG-AATATTAAAA--TTGCC-----T-AGAGCAT-----CA-CA--TTC-------------------------TTCTTTT---T-TCTA-AT-T--TAA---------GGCCC--AG-T--T-TA-AT---C--TGCACA-GGTC----AA--CTTA-CCC--CGACGCAACT--GAA-ACTA-----------G-G-GGGG
gi|6 : caCATGATTTAGCA-AAATGACCGCGGTGGGGAGTTAA--TA-CATTTT-----TA-TTTTTGCAAACCCT-CT-ATATTATCATTAG-AATAAAGATTTGAAAC-T-GTGTTTGTTTTC-ACCCAATTTTTG--C-TTCAAAACGTGCTTAGTTCGGAAT---ACACAA-A-T---T-AC-TACC-GACCTCGGTTCCACC-----------GAC--AAAAACAGAAAA----TCTTAACATTGCCCGTCGCATCAAAAACCATTTTG-AGGCCATC--GATCGTT-GAA-TTG-CTCGTT-ACCATGA-A--ATGTGTATAG-AATATT-AAA--TTGCCTGTCTT-AGAG-A------CA-CAACTTC-------------------------TTTCTTTTTCT-TC-A-ATGT--TAAGGCTAAATCGGCCC--AG-T--T-T--AT---T--TGCACAGGGTCCTCAAA--TTTACCCCCACGACGCAACT--GAAGACTA-----------GCG-GGGGTC-----TACTGCACAA-----CAGATAAATTGTCGATC--CTGCGATTTTATTCTTTTCCACAACACTTTTGGGT----TGTACCCTGTCAGC-TTGACGTATTTGGTGCCCGgg
gi|7 : -TTT-A--C--TTTAG-----TCGA-TCTAC------TGCACAA-CCCAAAAT-CCC-CTGAACAAA-CGG-GC----GA--TCCCCTGCA------AA-TCATTCTATTTATAT---CAAATTTCGTG-AAA-AATAAGCGA-TATT-T---AT-ATCCACC--TTCT--AAGACATGAT--AGCA-AC-TGAC---GATG-----TTAA-ATA-CATTTT-----TA-TTC--GCAA----T-TTTACAT-------AG-AATGA-GATT-GAGAC-T-GTGTTTTTGTTC-----AA-----A--G-TTCAA--C-AGC---ATT-GG--T---A---AACA-T---TCAC-TACC-GAC-TCG----CAC------------GAC--AAAA-CA---AA----TTTAA------------GCGTCAAA--------CG-AG-CCATGC-GA--GT--ATA-TTG-CT---T-ACCATGA-T--GT---CATAG-AATATT-AAA--TTGCC-----T-AGAGCAT-----AA-CA--TTC-------------------------TTCTTTT---T-TC---AT-T--TAA---------GGCCC--AG-T--T-T--AT---T--TGCAAA-GGTC----AA--TTTACCCC--CGACGCAACT--GAA-ACTA-----------G-GAGNNNNN-----NNNNNN-NNN-----NNNN-----NNNNNNNN-NNNNNNNNNNN-NNNNNN--NNNNNN---NNNNNNN----NNNN--NNNN-NNN-TCGA-----TTGGTGCCCGTG
gi|8 : ATACAAGGAAAATGAAGTCGGTC---CA-AAGTT-CCTGGCCTTGTAAAAGTT-G-------CTAACCACGATCCCACAACATCAAGCATGCGTATCAAAATACATTATCTGTTA--TTTAAC----ATGC-T-GATATTGAT--A--CA-TA-----CATATATTTCAATGACATAATTTCTCCAAATTATGAGATGAT-GTGGAa
gi|9 : cccccccccccctcctccctagagaaataccaggtaaatgatcatctgaattgttggtacttttactggaagaacttaatatacaaacagtgtatacataatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaataaagtttttgttatttctgtagattaacctctcattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATT-G-TTTTA--A--TTCGG-----TCGA-TCTACATGTACTGCACAA-CCTAAAAT-ATC-CTTTGCAAA-CGC-GC----GA--TCTCCTGCACTTCTCAA-TCATTTTATT----T---CAAATTTCTTG-AAA-AACAAGTGG-CAAT-TCCTAT-AT-TACC--CTTTACAAGACATGAT--AGCT-AA-CGGC---GGTG-----TTAA-GAA-CATTTTACCGGTA-TTT--GCAA----TATC-ATAT-------AG-AAAAG-GATT-GAGACTT-GTG
gi|9 : ttcatttccatctttatcatcaaatatttgttttcttaattacagtacacgtacatgaagTTTTCGTCC-T---AA-----A--G-TTCAA--C-TTT---ATT-AG--TA--A---AA-A-T---TCAC-TACT-AAT-TTG----CAA------------G-T--AAAA-AA---AA----ATTCA------------ggttgtttgagacttgtgggtttttaattggaggttggttttttttcgtcctaaagttcaactttattagtaaaaattcactactaatttgcaagtaaaaaaaaattca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGTAAAGACCGTCCCCCATTGAGGTGAATAAATCTCTGAATTGTTGGTGAAAGATTTCTTTTCTGGGAGACGCTTAAACTTATAT