lowQualScore : 11111111 22 111 222222 11111111111 111111111 555555555 11 2222222 111 222222222 111 444444444444444444444444444444444 22 2
lowQualScore : 99 5 5 5 0 5 66666666 33 4 55 000 8 999999 99999999999 3 44 3 777777777 44 3 6 6 3 77 222222222 3 3 3 3 77777 1 4 66 00 5 6 8 1 2222222 444 11 888888888 000 8 0 999999999999999999999999999999999 66 11 7 6 7
lowQualScore : .. . . . . . ........ .. . .. ... . ...... ........... . .. . ......... .. . . . . .. ......... . . . . ..... . . .. .. . . . . ....... ... .. ......... ... . . ................................. .. .. . . .
lowQualScore : 22 7 7 7 6 0 22222222 11 4 55 888 0 000000 22222222222 1 22 1 333333333 66 5 2 7 3 99 111111111 3 3 3 3 77777 1 0 99 66 7 7 0 4 4444444 888 66 888888888 666 0 8 444444444444444444444444444444444 22 77 3 7 0
consensus : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCG-GAT-ATAG--AAAAAA-A-T-GAG----TTGAAG-----------ATTTCA-C--A-TT---A-T---TTA--TTCCAGA-GCGCTT-TC-GC--CCTA--------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGA-CGTCGC--T---ATTA--TGACGTCATAGTAA---G--ACGACG-TCAA-TTTTTTG-CGCAATAA----ATG-T-TA--A--TGAAAATGCGCGAAAATAATTACTACATCTATGA
Reference ( gi|4 ) : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCC-GAT-ATAG--AAAAAA-A-T-GAG----T-GAAG-----------ATTTCA-C--A-TT---A-T---TTA--TTCCAGA-GCGCTT-TC-GC--CCT---------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGA-CGTCGC--T---ATTA--TGACGTCATAGT-A---G--ACAACG-TTAA-TTTTTTGGCGCAATAA----TTG-T-TA--A--TG-AAATTCACCCAAATAATTA-TACATATATGA
gi|1 : AAGT--A-AGT-C-CATGGT-A-T----A-GTCCGGAT-ATAG--AAAAAA-ATT-GAGT---T-GAAG-----------ATGTCA-C--A-TT---ATT---TTA--TTCCAGACGCGCTT-TC-G---CCT---------CGG-CTT-CTTCAGTGGGAATTT---C--AATAA-TAAGCCAC-TATCATAAAGTTGA-CGTCGC--TCCCATTA--TGACGTCATAGTAA---G--ACAACGCTTAATTTTTTTGCCGCAATAA----ATGCT-TA--A--TGAAAATGCACGAAAAT-ATTACTACATCTAT
gi|10 : tacgAAGT--A-CGT-C-CGTGGCCA-T--A-AAGTCG-GAT-ACAG--AAAAAATA-T-AGT----T-GAAG-----------AGTTCA-C--A-TT---A-T---TTA--TTCCAGA-GCGacatgtatctagcacaatgaatacatttcaatttacgaaaaattgtaaaaatcctatatatattgtacatatctgttttggatttaaaatttgtcaatgaaaatacaat
gi|6 : gAAAC--A-AAT-C-CTTGGT-A----A-A-GTA--AAC-ACAG--AAAACA-A-T-CAG----T-CAAATATATATATATATTTCA-C--G-TT----------TA--TTCCAAAAGCGCTT-TCCGC--CCG---------TGG-C-T-TATTGGT-TGAATTTATTT-GAAAAA-CAA--CGA-TATCATAAA-TTG
gi|13 : AAGTTCA-AGT-CACATGGT-AAT--A-C-GTCC-GAT-ATAG--AAAAAA-A-T-G-GTT--T-GAAG-----------ATTTCA-C--A-T
gi|12 : aacgAAGT--ACAGT-C-CATGGT-A-TTAA-A-GTC--GAT-ATAG--AAAAAA-T-TTGAG----TTGAAG-----------ATTTAG-C--A-TT---A-T---TTA--at
gi|7 : aagcg--A-AGT-T-CTTGGT-G-T--A-A-GTAG-GAT-ATAG--AGCAAA-T-T-GAG----TTGGAT-----------ATTTCA-C--A-TT---A-TCATTTA--TTC--GC-TCCCCTATC-GG--CCTACGTACG--CGG-C-T-CT------GGGATTT---C-AAATGA-T--------TATCATa
gi|5 : -AGTGC-CATGTT-A-T--ACA-GTC--GATTATAGCAAAAAAA-A-TTGAG----TTGAAGT----------ATTTCAACGAA-TT---A-T---T-A--TTC-AGA-GCAGCT-TC-GCT-CCTA--------CGGAC-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TGCTATAttg
gi|8 : atttaaagcgagaggtTAGT-A-T--A---GTCG-AGT-ATAG--ATAAAA-A-T-AAACATTT-GAAG------------TTTCA-T--A-TT-----T---ATA--TTCTAGA-GCGTAA-TC-GC--CAAA--------CGG-C-T-CTTTAAA-TGAATTT---C-AAAAAA-ttat
gi|9 : ct-ATAG--AACAAA-T-T-GAG----TTGAAT-----------ATTTCA-C--A-TTCTCA-T---TTA--ATCTAGA-GCGCTT-TC-GC--ACTA--------CGG-C-T-CTTTTGT-GGAATTT---C-A
gi|2 : --AAATAATA-T-GAG----TTGATG-----------ATTTCA-C--ACTT---A-T---TTA--TTCCAGA-GCGCTT-TC-GC--CCTA--------CGG-C-T--TTCAGT-GGAATTT---C-AAATAA-TAA--CAACTA-CATAAA-TTGA-CGTCGC--T---ATT---TGACGTCAT-GTAA---G--ACAACG-TTAA-TTTTTTGGCGC-ATAA----ATG-T-T---A--TGAAAATGCACCAAAATAATTATTACATCTATGA
gi|3 : AAG-----------TTTTCA-C--A-TT----------TA--TTTCAAA-GCACTT-TC-GC--CCTA--------TGG-G-T-CTTAAGT-GGAATTT---G-AAA-----AA--CA----------------------T--T---ATTG--TGATGTCATAGT-ATAGG--AAAACG----A-T--------GTAAAAA----ATG-TCCA--A--AG-AAA-GCGCGAAAGTAATTA-TACATAatgtatctagcacatgaaataacatttcaatttacggaaaaattgtaaatccaattatgtatgtacatatctgtagtttggattaaatttgtcaatgaaacaata
gi|15 : aaaatattcagtttG-----------ATTTCA-C--A-TT-----T---ATA--TTCTACA-GCGCTT-TC-GC--CTTGCGCTGTTGCGG-C-T-CTTCAGT-AGAATTT---gatatgtaacatatatttacctgctataaacaactcacgaaacattataaattcaattatacacataaca
gi|11 : TTTCA-C--A-TT---A-T---TTAGTTTCCAGA--CGCTTCTC-GC--CCTTA-------CGG-C-TGCTTCAGT-GGAATTT---CGAAATAA-TAA--CA
gi|14 : AAA-ACGCTT-----C--CCTA--------CGG-C-T-CTTCAAG-GGAATTT---C-AAATAATTAA--CAA-
gi|16 : -GCGTTT-TC-GCGCCCTA--------CGG-C-T-TCTCAGT-GGAATTT------AATAA-TAatgttattatttcgaaat
gi|1 : AAA-TTAAGCGTTGTCTT---ACTA--TGACGTCATAAT-G---GGAGCGACG-TCAA-CTTTATG-----ATAGTGGCTTA-T-TA--T--TG-AAATTC
gi|2 : tacgaagtaagtccatggtatagtccggatatagaaaaaaattgagttgaagatgtcacattattttattccagacgcgctttcgcctcggcttcttcagtggAAA-TTAA-CGTTG---T---CTTACATGACGTCA-AAT-A---G---CGACG-TCAA-TTTAT-------GTAG----TTG-T-TATTATTTG-AAATTCttttgccgcaataaatgcttaatgaaaatgcacgaaaatattactacatctatacatgtatctagcacaatgaatacatttcaatttacgaaaaattgtaaaaatcctatatatattgtacatatctgttttggatttaaaatttgtcaatgaaaatacaat
Alignments
lowQualScore : 1111111111 11111 111111111111111111 111 222222 1 11 222 111 1
lowQualScore : 77 5 5 5 4 7777 999 0 44 999 6 555 3 2222222222 2 33 2 99999 44 2 5 6 3 77 666666666666666666 3 3 3 3 66666 0 3 66 88 3 8 777 7 3 888888 2 0 8 33 666 9 111 3 3 3 2 2 3 9 55
lowQualScore : .. . . . . .... ... . .. ... . ... . .......... . .. . ..... .. . . . . .. .................. . . . . ..... . . .. .. . . ... . . ...... . . . .. ... . ... . . . . . . . ..
lowQualScore : 99 0 0 0 4 0000 777 9 66 777 7 888 1 5555555555 9 99 9 99999 22 3 7 2 1 33 999999999999999999 1 1 1 1 33333 2 6 11 11 6 0 555 0 2 222222 0 0 2 22 222 2 000 2 2 2 0 5 2 0 88
consensus : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG--AAAAAA-A-T-GAG---TTGAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAGT-----AAGACAACG-TTAA-TTTTTTGG-CGCAATAAATG-T-TAATGAAAATGCACNAAAATAATTACTACATCTATGA
Reference ( family-1322 ) : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG--AAAAAA-A-T-GAG---TTGAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAGT-----AAGACGACG-TCAA-TTTTTT-G-CGCAATAAATG-T-TAATGAAAATGCGCGAAAATAATTACTACATCTATGA
gi|1 : AAGT--A-AGT-C-CATGGT-A-T--A-G-TCCGGATATAG--AAAAAA-ATT-GAG---TTGAAG-AT----------GTCA-C--A-TT---ATTTTA--TTCCAGACGCGCTT-TC-GC--C--------T---------CGG-CTT-CTTCAGTGGGAATTT---C--AATAA-TAAGCCAC-TATCATAAAGTTGACGTCGCTCCCATTATGACGTCATAGT-----AAGACAACGCTTAATTTTTTT-GCCGCAATAAATGCT-TAATGAAAATGCACGAAAAT-ATTACTACATCTAT
gi|10 : tacgAAGT--A-CGT-C-CGTGGCCA-T--A-AAGTCGGATACAG--AAAAAATA-T--AG---TTGAAG-AG----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGacatgtatctagcacaatgaatacatttcaatttacgaaaaattgtaaaaatcctatatatattgtacatatctgttttggatttaaaatttgtcaatgaaaatacaat
gi|11 : gT----------TTCA-C--A-TT---A-TTTAGTTTCCAGA--CGCTTCTC-GC--C--------CTTA------CGG-C-TGCTTCAGT-GGAATTT---CGAAATAA-TAA--CA
gi|12 : AAGT--ACAGT-C-CATGGT-A-TTAA-A-GTCG-ATATAG--AAAAAA-T-TTGAG---TTGAAG-AT----------TTAG-C--A-TT---A-TTTA--
gi|13 : aagcgAAGTTCA-AGT-CACATGGT-AAT--A-C-GTCCGATATAG--AAAAAA-A-T-GGT---TTGAAG-AT----------TTCA-C--A-Ta
gi|14 : aacgAAA-ACGCTT-----C--C--------CT-A------CGG-C-T-CTTCAAG-GGAATTT---C-AAATAATTAA--CAA-at
gi|15 : G-AT----------TTCA-C--A-TT-----TATA--TTCTACA-GCGCTT-TC-GC--CTTGCGCTGTT-G------CGG-C-T-CTTCAGT-AGAATTT---atgttattatttcgaaat
gi|16 : -GCGTTT-TC-GCGCC--------CT-A------CGG-C-T-TCTCAGT-GGAATTT------AATAA-TA
gi|2 : --AAATAATA-T-GAG---TTGATG-AT----------TTCA-C--ACTT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T--TTCAGT-GGAATTT---C-AAATAA-TAA--CAACTA-CATAAA-TTGACGTCGCT---ATT-TGACGTCAT-GT-----AAGACAACG-TTAA-TTTTTTGG-CGC-ATAAATG-T-T-ATGAAAATGCACCAAAATAATTATTACATCTATGA
gi|3 : --AAAATA-T-T-CAG---TTTAAG-TT----------TTCA-C--A-TT-------TA--TTTCAAA-GCACTT-TC-GC--C--------CT-A------TGG-G-T-CTTAAGT-GGAATTT---G-AAA-----AA--CA---------------------TT---ATTGTGATGTCATAGTATAGGAAAACGATG-TAAA----------------AAATG-TCCAAAGAAA--GCGCGAAAGTAATTA-TACA--TATGAatgtatctagcacatgaaataacatttcaatttacggaaaaattgtaaatccaattatgtatgtacatatctgtagtttggattaaatttgtcaatgaaacaata
gi|4 : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCCGATATAG--AAAAAA-A-T-GAG---T-GAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT--------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAGT------AGACAACG-TTAA-TTTTTTGG-CGCAATAATTG-T-TAATG-AAATTCACCCAAATAATTA-TACATATATGAtatgtaacatatatttacctgctataaacaactcacgaaacattataaattcaattatacacataaca
gi|5 : -AGTGC-CATGTT-A-T--ACA-GTCGATTATAGCAAAAAAA-A-TTGAG---TTGAAGTAT----------TTCAACGAA-TT---A-TT-A--TTC-AGA-GCAGCT-TC-GCT-C--------CT-A------CGGAC-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TGCTATA
gi|6 : atttaaagcgagaggtAAAC--A-AAT-C-CTTGGT-A----A-A-GT-AAACACAG--AAAACA-A-T-CAG---TCAAAT-ATATATATATATTTCA-C--G-TT-------TA--TTCCAAAAGCGCTT-TCCGC--C--------C--G------TGG-C-T-TATTGGT-TGAATTTATTT-GAAAAA-CAA--CGA-TATCATAAA-TTGttat
gi|7 : --A-AGT-T-CTTGGT-G-T--A-A-GTAGGATATAG--AGCAAA-T-T-GAG---TTGGAT-AT----------TTCA-C--A-TTATCA-TTTA--TTC--GC-TCCCCTATC-GG--C--------CT-ACGTACGCGG-C-T-C-----T-GGGATTT---C-AAATGA-T--------TATCAT
gi|8 : TAGT-A-T--A---GTCGAGTATAG--ATAAAA-A-T-AAACATTTGAAG--T----------TTCA-T--A-TT-----TATA--TTCTAGA-GCGTAA-TC-GC--C--------AA-A------CGG-C-T-CTTTAAA-TGAATTT---C-AAAAAA-ttg
gi|9 : ctATAG--AACAAA-T-T-GAG---TTGAAT-AT----------TTCA-C--A-TTCTCA-TTTA--ATCTAGA-GCGCTT-TC-GC--A--------CT-A------CGG-C-T-CTTTTGT-GGAATTT---C-A
Alignments
lowQualScore : 1111111111 11111 111111111111111111 111 11 11 1 111 1
lowQualScore : 77 5 5 5 4 7777 999 0 44 999 6 555 3 2222222222 2 33 2 99999 44 2 5 6 3 77 666666666666666666 3 3 3 3 66666 0 3 66 88 3 8 777 7 3 33 3 33 0 3 2 3 111 3 3 3 1 3 9 55
lowQualScore : .. . . . . .... ... . .. ... . ... . .......... . .. . ..... .. . . . . .. .................. . . . . ..... . . .. .. . . ... . . .. . .. . . . . ... . . . . . . ..
lowQualScore : 99 0 0 0 4 0000 777 9 66 777 7 888 1 5555555555 9 99 9 99999 22 3 7 2 1 33 999999999999999999 1 1 1 1 33333 2 6 11 11 6 0 555 0 2 88 2 22 0 2 5 2 000 2 2 2 0 2 0 88
consensus : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG--AAAAAA-A-T-GAG---TTGAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--TAAGACAACG-TTAA-TTTTTTGGCGCAATAAATG-T-TAATGAAAATGCACNAAAATAATTACTACATCTATGA
Reference ( family-1322 ) : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG--AAAAAA-A-T-GAG---TTGAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--TAAGACAACG-TTAA-TTTTTTGGCGCAATAAATG-T-TAATGAAAATGCACNAAAATAATTACTACATCTATGA
gi|1 : AAGT--A-AGT-C-CATGGT-A-T--A-G-TCCGGATATAG--AAAAAA-ATT-GAG---TTGAAG-AT----------GTCA-C--A-TT---ATTTTA--TTCCAGACGCGCTT-TC-GC--C--------T---------CGG-CTT-CTTCAGTGGGAATTT---C--AATAA-TAAGCCAC-TATCATAAAGTTGACGTCGCTCCCATTATGACGTCATAG--TAAGACAACGCTTAATTTTTTTGCCGCAATAAATGCT-TAATGAAAATGCACGAAAAT-ATTACTACATCTAT
gi|10 : tacgAAGT--A-CGT-C-CGTGGCCA-T--A-AAGTCGGATACAG--AAAAAATA-T--AG---TTGAAG-AG----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGacatgtatctagcacaatgaatacatttcaatttacgaaaaattgtaaaaatcctatatatattgtacatatctgttttggatttaaaatttgtcaatgaaaatacaat
gi|11 : gT----------TTCA-C--A-TT---A-TTTAGTTTCCAGA--CGCTTCTC-GC--C--------CTTA------CGG-C-TGCTTCAGT-GGAATTT---CGAAATAA-TAA--CA
gi|12 : AAGT--ACAGT-C-CATGGT-A-TTAA-A-GTCG-ATATAG--AAAAAA-T-TTGAG---TTGAAG-AT----------TTAG-C--A-TT---A-TTTA--
gi|13 : aagcgAAGTTCA-AGT-CACATGGT-AAT--A-C-GTCCGATATAG--AAAAAA-A-T-GGT---TTGAAG-AT----------TTCA-C--A-Ta
gi|14 : aacgAAA-ACGCTT-----C--C--------CT-A------CGG-C-T-CTTCAAG-GGAATTT---C-AAATAATTAA--CAA-at
gi|15 : G-AT----------TTCA-C--A-TT-----TATA--TTCTACA-GCGCTT-TC-GC--CTTGCGCTGTT-G------CGG-C-T-CTTCAGT-AGAATTT---atgttattatttcgaaat
gi|16 : -GCGTTT-TC-GCGCC--------CT-A------CGG-C-T-TCTCAGT-GGAATTT------AATAA-TA
gi|2 : --AAATAATA-T-GAG---TTGATG-AT----------TTCA-C--ACTT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T--TTCAGT-GGAATTT---C-AAATAA-TAA--CAACTA-CATAAA-TTGACGTCGCT---ATT-TGACGTCAT-G--TAAGACAACG-TTAA-TTTTTTGGCGC-ATAAATG-T-T-ATGAAAATGCACCAAAATAATTATTACATCTATGA
gi|3 : --AAAATA-T-T-CAG---TTTAAG-TT----------TTCA-C--A-TT-------TA--TTTCAAA-GCACTT-TC-GC--C--------CT-A------TGG-G-T-CTTAAGT-GGAATTT---G-AAA-----AA--CA---------------------TT---ATTGTGATGTCATAGTATAGGAAAACG----A-T--------GTAAAAAATG-TCCAAAGAAA--GCGCGAAAGTAATTA-TACA--TATGAatgtatctagcacatgaaataacatttcaatttacggaaaaattgtaaatccaattatgtatgtacatatctgtagtttggattaaatttgtcaatgaaacaata
gi|4 : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCCGATATAG--AAAAAA-A-T-GAG---T-GAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT--------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--T-AGACAACG-TTAA-TTTTTTGGCGCAATAATTG-T-TAATG-AAATTCACCCAAATAATTA-TACATATATGAtatgtaacatatatttacctgctataaacaactcacgaaacattataaattcaattatacacataaca
gi|5 : -AGTGC-CATGTT-A-T--ACA-GTCGATTATAGCAAAAAAA-A-TTGAG---TTGAAGTAT----------TTCAACGAA-TT---A-TT-A--TTC-AGA-GCAGCT-TC-GCT-C--------CT-A------CGGAC-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TGCTATA
gi|6 : atttaaagcgagaggtAAAC--A-AAT-C-CTTGGT-A----A-A-GT-AAACACAG--AAAACA-A-T-CAG---TCAAAT-ATATATATATATTTCA-C--G-TT-------TA--TTCCAAAAGCGCTT-TCCGC--C--------C--G------TGG-C-T-TATTGGT-TGAATTTATTT-GAAAAA-CAA--CGA-TATCATAAA-TTGttat
gi|7 : --A-AGT-T-CTTGGT-G-T--A-A-GTAGGATATAG--AGCAAA-T-T-GAG---TTGGAT-AT----------TTCA-C--A-TTATCA-TTTA--TTC--GC-TCCCCTATC-GG--C--------CT-ACGTACGCGG-C-T-C-----T-GGGATTT---C-AAATGA-T--------TATCAT
gi|8 : TAGT-A-T--A---GTCGAGTATAG--ATAAAA-A-T-AAACATTTGAAG--T----------TTCA-T--A-TT-----TATA--TTCTAGA-GCGTAA-TC-GC--C--------AA-A------CGG-C-T-CTTTAAA-TGAATTT---C-AAAAAA-ttg
gi|9 : ctATAG--AACAAA-T-T-GAG---TTGAAT-AT----------TTCA-C--A-TTCTCA-TTTA--ATCTAGA-GCGCTT-TC-GC--A--------CT-A------CGG-C-T-CTTTTGT-GGAATTT---C-A
Alignments
lowQualScore : 1111111111 11111 111111111111111111 111 11 11 1 111 1
lowQualScore : 77 5 5 5 4 7777 999 0 44 999 6 555 3 2222222222 2 33 2 99999 44 2 5 6 3 77 666666666666666666 3 3 3 3 66666 0 3 66 88 3 8 777 7 3 33 3 33 0 3 2 3 111 3 3 3 1 3 9 55
lowQualScore : .. . . . . .... ... . .. ... . ... . .......... . .. . ..... .. . . . . .. .................. . . . . ..... . . .. .. . . ... . . .. . .. . . . . ... . . . . . . ..
lowQualScore : 99 0 0 0 4 0000 777 9 66 777 7 888 1 5555555555 9 99 9 99999 22 3 7 2 1 33 999999999999999999 1 1 1 1 33333 2 6 11 11 6 0 555 0 2 88 2 22 0 2 5 2 000 2 2 2 0 2 0 88
consensus : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG--AAAAAA-A-T-GAG---TTGAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--TAAGACAACG-TTAA-TTTTTTGGCGCAATAAATG-T-TAATGAAAATGCACNAAAATAATTACTACATCTATGA
Reference ( family-1322 ) : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG--AAAAAA-A-T-GAG---TTGAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--TAAGACAACG-TTAA-TTTTTTGGCGCAATAAATG-T-TAATGAAAATGCACNAAAATAATTACTACATCTATGA
gi|1 : AAGT--A-AGT-C-CATGGT-A-T--A-G-TCCGGATATAG--AAAAAA-ATT-GAG---TTGAAG-AT----------GTCA-C--A-TT---ATTTTA--TTCCAGACGCGCTT-TC-GC--C--------T---------CGG-CTT-CTTCAGTGGGAATTT---C--AATAA-TAAGCCAC-TATCATAAAGTTGACGTCGCTCCCATTATGACGTCATAG--TAAGACAACGCTTAATTTTTTTGCCGCAATAAATGCT-TAATGAAAATGCACGAAAAT-ATTACTACATCTAT
gi|10 : tacgAAGT--A-CGT-C-CGTGGCCA-T--A-AAGTCGGATACAG--AAAAAATA-T--AG---TTGAAG-AG----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGacatgtatctagcacaatgaatacatttcaatttacgaaaaattgtaaaaatcctatatatattgtacatatctgttttggatttaaaatttgtcaatgaaaatacaat
gi|11 : gT----------TTCA-C--A-TT---A-TTTAGTTTCCAGA--CGCTTCTC-GC--C--------CTTA------CGG-C-TGCTTCAGT-GGAATTT---CGAAATAA-TAA--CA
gi|12 : AAGT--ACAGT-C-CATGGT-A-TTAA-A-GTCG-ATATAG--AAAAAA-T-TTGAG---TTGAAG-AT----------TTAG-C--A-TT---A-TTTA--
gi|13 : aagcgAAGTTCA-AGT-CACATGGT-AAT--A-C-GTCCGATATAG--AAAAAA-A-T-GGT---TTGAAG-AT----------TTCA-C--A-Ta
gi|14 : aacgAAA-ACGCTT-----C--C--------CT-A------CGG-C-T-CTTCAAG-GGAATTT---C-AAATAATTAA--CAA-at
gi|15 : G-AT----------TTCA-C--A-TT-----TATA--TTCTACA-GCGCTT-TC-GC--CTTGCGCTGTT-G------CGG-C-T-CTTCAGT-AGAATTT---atgttattatttcgaaat
gi|16 : -GCGTTT-TC-GCGCC--------CT-A------CGG-C-T-TCTCAGT-GGAATTT------AATAA-TA
gi|2 : --AAATAATA-T-GAG---TTGATG-AT----------TTCA-C--ACTT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T--TTCAGT-GGAATTT---C-AAATAA-TAA--CAACTA-CATAAA-TTGACGTCGCT---ATT-TGACGTCAT-G--TAAGACAACG-TTAA-TTTTTTGGCGC-ATAAATG-T-T-ATGAAAATGCACCAAAATAATTATTACATCTATGA
gi|3 : --AAAATA-T-T-CAG---TTTAAG-TT----------TTCA-C--A-TT-------TA--TTTCAAA-GCACTT-TC-GC--C--------CT-A------TGG-G-T-CTTAAGT-GGAATTT---G-AAA-----AA--CA---------------------TT---ATTGTGATGTCATAGTATAGGAAAACG----A-T--------GTAAAAAATG-TCCAAAGAAA--GCGCGAAAGTAATTA-TACA--TATGAatgtatctagcacatgaaataacatttcaatttacggaaaaattgtaaatccaattatgtatgtacatatctgtagtttggattaaatttgtcaatgaaacaata
gi|4 : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCCGATATAG--AAAAAA-A-T-GAG---T-GAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT--------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--T-AGACAACG-TTAA-TTTTTTGGCGCAATAATTG-T-TAATG-AAATTCACCCAAATAATTA-TACATATATGAtatgtaacatatatttacctgctataaacaactcacgaaacattataaattcaattatacacataaca
gi|5 : -AGTGC-CATGTT-A-T--ACA-GTCGATTATAGCAAAAAAA-A-TTGAG---TTGAAGTAT----------TTCAACGAA-TT---A-TT-A--TTC-AGA-GCAGCT-TC-GCT-C--------CT-A------CGGAC-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TGCTATA
gi|6 : atttaaagcgagaggtAAAC--A-AAT-C-CTTGGT-A----A-A-GT-AAACACAG--AAAACA-A-T-CAG---TCAAAT-ATATATATATATTTCA-C--G-TT-------TA--TTCCAAAAGCGCTT-TCCGC--C--------C--G------TGG-C-T-TATTGGT-TGAATTTATTT-GAAAAA-CAA--CGA-TATCATAAA-TTGttat
gi|7 : --A-AGT-T-CTTGGT-G-T--A-A-GTAGGATATAG--AGCAAA-T-T-GAG---TTGGAT-AT----------TTCA-C--A-TTATCA-TTTA--TTC--GC-TCCCCTATC-GG--C--------CT-ACGTACGCGG-C-T-C-----T-GGGATTT---C-AAATGA-T--------TATCAT
gi|8 : TAGT-A-T--A---GTCGAGTATAG--ATAAAA-A-T-AAACATTTGAAG--T----------TTCA-T--A-TT-----TATA--TTCTAGA-GCGTAA-TC-GC--C--------AA-A------CGG-C-T-CTTTAAA-TGAATTT---C-AAAAAA-ttg
gi|9 : ctATAG--AACAAA-T-T-GAG---TTGAAT-AT----------TTCA-C--A-TTCTCA-TTTA--ATCTAGA-GCGCTT-TC-GC--A--------CT-A------CGG-C-T-CTTTTGT-GGAATTT---C-A
blockSeqs : TC C G A C TTA AA CA TA T CAT T ATATATATAT A GA C ATCA GT C A C C GC TTGCGCTGTTG A . G . ATTT T . AC T . . G A TA A T . T G A TC A A A C A T TC
blockSeqs : . . . . . AT CA . TA T . . . . . . CTCA . C . A . T CTACGTACG . . . . CG . . A C . . A A . A T . T G A T A A A G A . TA
blockSeqs : . . . . . T A . T . . . . . . . A . T . . . . CTTA . . . . C . . A T . . . . . . . . . . . T . . . C A . .
blockSeqs : . . . . . T C . A . . . . . . . A . C . . . . CTA . . . . C . . A T .
blockSeqs : . . . . . T A . T . . . . . . . A . C . . . . CTA . . . . G . . A .
blockSeqs : . . . . . T A . A . . . . . . . A . C . . . . CTA . . . . C . . . .
blockSeqs : . . . . T A . A . . . . . . . A . C . . . . CTA . . . . C . . .
blockSeqs : . . . . A . . . . . . . A . T . . . . CTA . . . . C . .
blockSeqs : . T . . . . . . . . . T . . . . AAA . . . . C .
blockSeqs : . A . . . . . . . . . . . . . . CTA . . . . C .
blockSeqs : . T . . . . . . . . . . . . . . CT . . . . .
blockSeqs : . . . . . . . . . . . CG . . . .
blockSeqs : . . . . .
blockSeqCons : N** A**** CTA*************** **
originalCons : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG--AAAAAA-A-T-GAG---TTGAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--TAAGACAACG-TTAA-TTTTTTGGCGCAATAAATG-T-TAATGAAAATGCACNAAAATAATTACTACATCTATGA
finalCons : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG--AAAAAAN--T-GAG---TTGAAG-AT----------TTCA-C--A-TTA----TTTA--TTCCAGA-GCGCTT-TC-GC--CCTA---------------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--TAAGACAACG-TTAA-TTTTTTGGCGCAATAAATG-T-TAATGAAAATGCACNAAAATAATTACTACATCTATGA
Alignments
lowQualScore : 1111111111 11111 111111111111111111 111 11 11 1 111 1
lowQualScore : 77 5 5 5 4 7777 999 0 999 44 3 555 3 2222222222 2 33 2 99999 44 2 5 6 3 77 666666666666666666 3 3 3 3 66666 0 3 66 88 3 8 777 7 3 33 3 33 0 3 2 3 111 3 3 3 1 3 9 55
lowQualScore : .. . . . . .... ... . ... .. . ... . .......... . .. . ..... .. . . . . .. .................. . . . . ..... . . .. .. . . ... . . .. . .. . . . . ... . . . . . . ..
lowQualScore : 99 0 0 0 4 0000 777 9 222 33 3 888 1 5555555555 9 99 9 99999 22 3 7 2 1 33 999999999999999999 1 1 1 1 33333 2 6 11 11 6 0 555 0 2 88 2 22 0 2 5 2 000 2 2 2 0 2 0 88
consensus : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG---AAAAAAT-T-GAG---TTGAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--TAAGACAACG-TTAA-TTTTTTGGCGCAATAAATG-T-TAATGAAAATGCACNAAAATAATTACTACATCTATGA
Reference ( family-1322 ) : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCGGATATAG---AAAAAAN-T-GAG---TTGAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--TAAGACAACG-TTAA-TTTTTTGGCGCAATAAATG-T-TAATGAAAATGCACNAAAATAATTACTACATCTATGA
gi|1 : AAGT--A-AGT-C-CATGGT-A-T--A-G-TCCGGATATAGA--AAAAAAT-T-GAG---TTGAAG-AT----------GTCA-C--A-TT---ATTTTA--TTCCAGACGCGCTT-TC-GC--C--------T---------CGG-CTT-CTTCAGTGGGAATTT---C--AATAA-TAAGCCAC-TATCATAAAGTTGACGTCGCTCCCATTATGACGTCATAG--TAAGACAACGCTTAATTTTTTTGCCGCAATAAATGCT-TAATGAAAATGCACGAAAAT-ATTACTACATCTAT
gi|10 : tacgAAGT--A-CGT-C-CGTGGCCA-T--A-AAGTCGGATACAG---AAAAAAT-A-TAG---TTGAAG-AG----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGacatgtatctagcacaatgaatacatttcaatttacgaaaaattgtaaaaatcctatatatattgtacatatctgttttggatttaaaatttgtcaatgaaaatacaat
gi|11 : gT----------TTCA-C--A-TT---A-TTTAGTTTCCAGA--CGCTTCTC-GC--C--------CTTA------CGG-C-TGCTTCAGT-GGAATTT---CGAAATAA-TAA--CA
gi|12 : AAGT--ACAGT-C-CATGGT-A-TTAA-A-GTCG-ATATAG---AAAAAAT-TTGAG---TTGAAG-AT----------TTAG-C--A-TT---A-TTTA--
gi|13 : aagcgAAGTTCA-AGT-CACATGGT-AAT--A-C-GTCCGATATAG---AAAAAAA-T-GGT---TTGAAG-AT----------TTCA-C--A-Ta
gi|14 : aacgAAA-ACGCTT-----C--C--------CT-A------CGG-C-T-CTTCAAG-GGAATTT---C-AAATAATTAA--CAA-at
gi|15 : G-AT----------TTCA-C--A-TT-----TATA--TTCTACA-GCGCTT-TC-GC--CTTGCGCTGTT-G------CGG-C-T-CTTCAGT-AGAATTT---atgttattatttcgaaat
gi|16 : -GCGTTT-TC-GCGCC--------CT-A------CGG-C-T-TCTCAGT-GGAATTT------AATAA-TA
gi|2 : ---AAATAATAT-GAG---TTGATG-AT----------TTCA-C--ACTT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT-A------CGG-C-T--TTCAGT-GGAATTT---C-AAATAA-TAA--CAACTA-CATAAA-TTGACGTCGCT---ATT-TGACGTCAT-G--TAAGACAACG-TTAA-TTTTTTGGCGC-ATAAATG-T-T-ATGAAAATGCACCAAAATAATTATTACATCTATGA
gi|3 : ---AAAATAT-T-CAG---TTTAAG-TT----------TTCA-C--A-TT-------TA--TTTCAAA-GCACTT-TC-GC--C--------CT-A------TGG-G-T-CTTAAGT-GGAATTT---G-AAA-----AA--CA---------------------TT---ATTGTGATGTCATAGTATAGGAAAACG----A-T--------GTAAAAAATG-TCCAAAGAAA--GCGCGAAAGTAATTA-TACA--TATGAatgtatctagcacatgaaataacatttcaatttacggaaaaattgtaaatccaattatgtatgtacatatctgtagtttggattaaatttgtcaatgaaacaata
gi|4 : AAGT--A-AGT-C-CATGGT-A-T--A-A-GTCCGATATAG---AAAAAAA-T-GAG---T-GAAG-AT----------TTCA-C--A-TT---A-TTTA--TTCCAGA-GCGCTT-TC-GC--C--------CT--------CGG-C-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TATCATAAA-TTGACGTCGCT---ATTATGACGTCATAG--T-AGACAACG-TTAA-TTTTTTGGCGCAATAATTG-T-TAATG-AAATTCACCCAAATAATTA-TACATATATGAtatgtaacatatatttacctgctataaacaactcacgaaacattataaattcaattatacacataaca
gi|5 : -AGTGC-CATGTT-A-T--ACA-GTCGATTATAGCAAAAAAAAT-T-GAG---TTGAAGTAT----------TTCAACGAA-TT---A-TT-A--TTC-AGA-GCAGCT-TC-GCT-C--------CT-A------CGGAC-T-CTTCAGT-GGAATTT---C-AAATAA-TAA--CAA-TGCTATA
gi|6 : atttaaagcgagaggtAAAC--A-AAT-C-CTTGGT-A----A-A-GT-AAACACAG---AAAACAA-T-CAG---TCAAAT-ATATATATATATTTCA-C--G-TT-------TA--TTCCAAAAGCGCTT-TCCGC--C--------C--G------TGG-C-T-TATTGGT-TGAATTTATTT-GAAAAA-CAA--CGA-TATCATAAA-TTGttat
gi|7 : --A-AGT-T-CTTGGT-G-T--A-A-GTAGGATATAG---AGCAAAT-T-GAG---TTGGAT-AT----------TTCA-C--A-TTATCA-TTTA--TTC--GC-TCCCCTATC-GG--C--------CT-ACGTACGCGG-C-T-C-----T-GGGATTT---C-AAATGA-T--------TATCAT
gi|8 : TAGT-A-T--A---GTCGAGTATAG---ATAAAAA-T-AAACATTTGAAG--T----------TTCA-T--A-TT-----TATA--TTCTAGA-GCGTAA-TC-GC--C--------AA-A------CGG-C-T-CTTTAAA-TGAATTT---C-AAAAAA-ttg
gi|9 : ctATAG---AACAAAT-T-GAG---TTGAAT-AT----------TTCA-C--A-TTCTCA-TTTA--ATCTAGA-GCGCTT-TC-GC--A--------CT-A------CGG-C-T-CTTTTGT-GGAATTT---C-A