lowQualScore : 111111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11111111111 11111 1111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 000000 1 1 111 222 22222 4444444 11 1 11 44444444444444 11 11 22 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4444444 22 2222222 11 555555 33 222 00000000000 00000 1 55555555555 111111 1 1 111 2222222222222222222222222222222222222222222222222222222222222222222222222 6666666 33333 1 1 1 11 1 1 2222 1 11111 22222 333333333 111 1 444444444444444444444444444444444444444444444444444 555555555555555 111 11 111111
lowQualScore : 6 666666 5 3 3 6 777 444 8 00000 3 8 0 2 7777777 11 0 66 6 44444444444444 11 3 33 55 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 2 0000000 6 33 66 2222222 22 999999 6 22 6 999 6 22222222222 6 00000 5 4 8 66666666666 6 66 7 111111 3 3 1 0 3 6 0 5 6 111 5555555555555555555555555555555555555555555555555555555555555555555555555 5555555 55555 5 6 0 33 0 0 1111 0 88888 3 55555 0 66 444444444 2 6 444 3 6 99 3 9 555555555555555555555555555555555555555555555555555 1 7 1 888 555555555555555 444 4 1 33 5 1 888888 5 2 6
lowQualScore : . ...... . . . . ... ... . ..... . . . . ....... .. . .. . .............. .. . .. .. ........................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . ....... . .. .. ....... .. ...... . .. . ... . ........... . ..... . . . ........... . .. . ...... . . . . . . . . . ... ......................................................................... ....... ..... . . . .. . . .... . ..... . ..... . .. ......... . . ... . . .. . . ................................................... . . . ... ............... ... . . .. . . ...... . . .
lowQualScore : 0 000000 0 0 3 0 555 222 0 00000 0 0 8 2 0000000 00 0 55 0 22222222222222 55 2 22 88 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5 0000000 0 00 55 5555555 00 000000 0 00 0 000 0 00000000000 0 00000 5 0 3 22222222222 3 11 1 555555 6 6 6 8 4 8 7 7 7 777 7777777777777777777777777777777777777777777777777777777777777777777777777 0000000 00000 0 5 0 88 0 0 2222 0 55555 2 00000 2 88 888888888 5 5 000 0 7 22 3 2 555555555555555555555555555555555555555555555555555 0 8 0 888 000000000000000 000 0 7 66 0 4 111111 7 5 0
consensus : NNGGGTGCC-----AAATGGGGCTNC-ATCTTTTT---GTAA--TCAAAATC-AATT-----TTGTGTAC-ACAAAATTGAATTCCGTC-T--NNACAAAA--TT-ATTTTTGTCGCACAAAAATACGTTGTA-GTACNTGTTTTATGATAACTTCANTTN-TGTATTGACA----T-GTTAAA-AAAA-T-ANATNT---TG-----AT--ACAAAATT--A-TTTTTCAGTGGACGAAA-ATN--ATTTTTGTCATN-ACG------AAATCCATTTTTGTC-----------------T-G----CAAA-CTC-GATTTT-TCA-G--AAATTC-GTTTTGTCAAT-TATG--TATGCAAATATTN--AACTTATT----TGCGTAC---AAAATAGACTTTTGTCA----------NTTAG-TG---------ACAAAANTGNATTTTTGCG-GAACAAATGTTGA-TAT-------CGAGACGC-CAAATGAG--NCTNNCGATT-----TGTACTCNANATNC-----ANTTTTGCGTG-ACGA-------AGACTNAGTT--------------AAAAATGAATTCAACTNNGCA-CAT-AGTNAGTTTTGTNTAACAGAAGCAAATTANTGTACNNAATCCAGTNTATGGATATGCAAATGAAAACTATCACCATGTTTTTGTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGATCAGCAGAC--TATTTCCTAACTTCCTGTGAGAAGCGCATGCTCCAGTATGGAATCTCATTTGTTANCAAATGGAGAT---ATA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCG-AATGTAACATC-ATTT---CCAG------GCCC-AGGGGG-A-GGGGTGCGTT--TGCA---CA---CCCCCAC--CCC---CTG----GAAAAA-GCAAAATGTACTA----TTGAAGTAAGATTTTA--CTCTGAATATT-G--CCTA-TT-AATTAG----TA-ATT--T--ACAGAAATTC-----TCTTTGAATTTGAAG----A-A-ATNTGCT---GAAGACGCA--ATT-AATACGGAT---TTTATTTATCCA--A-----T-ATTGA-CCG-TTG----TAT-AT-ATCAAGTCAGNACCGT-ACAC-----GGGG---GANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
Reference ( gi|1 ) : CAGGGCGCCTGAGTGAATTGAATTTC-ATCCTTTT---GTAT--TCAAAATC-AATT-----TTATGTAC-ACAAAATTGAATTCTGTT-T--TTACAAAA--TT-ATTTTTGTTTCACAAAGATATGTTATACATGCATGTTTCATAATAACTTTAATTA-TGTACGGACAAAAATAATTAAA-AAAA---AAATGT---TG-----A---ACAAAATT--A-TCTTCCAGTAGATAAAA-ATT--ATTTTTGTTTTC-ATA------AAATTCATTTTTGTC----------------TTCG----CAAAATTC-AATTTTGTCATGATAAATTTCCTTTTATCAAT-TATAT-TAGGCAAATATT---AACCTATC----TGTATAC---AAAATTTACTTTTGCAA----------ATTAG------------ACAAAATTGAATTTGTATG-GA--AAATGTTGA-TAT-------CGAGACGC-CACATGAG--CCTAGTGATT-----CGCACTCAAAATCC-----ATTTTCGTGTGGACAA-------AGACTAAGTT--------------AAAAATTAATTCAATTTTATGTCATTAGTCAATTTTGTCTGACAGAAGTAAATT-TTGTATTGAAATTAGTTTACAGAC-TCCTAACGAAAACACTCATCACAATTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATTAGCAGACATCATATC--GACTTCCTGTGAGAGGCGCATGCTC-----TGGAATCTCATTTATTATCAAAAGGAAATC--ATA---CCAGGCAGGGC--CTGTCGACCGCA------GCAATGA-C-AAACCGAATGTTTCGTCATTCGGGATGTCG-AATGTAACATC-ATTT---CCAG------ACCC-TGGGGG-A-GGGGTGCATT--TGCA--ACA---CCCCCAT--CCC---CTG----GAAAAAAGCAAAATGTACTACTAATTAAAGTAAGATTTTG--CGCTCAAAATT-G--CCTA-TT-AATTAG----TA-ATT--T--ACAGAAATTC-----TCTTTGAATTTGAAG----ACA-ATCTGCT---GAAAATGCA--ATT-AATACAGGC---TTCATTTACCCATGAGTGAGTGACTGA-CCG-TTG----TATCATAATCAAGTCAGGACCGT-ATAC-----GGAG---GAAAGG---GGGGGGGGGGTGATTTGC--CTAAAATATCGCAC---CTTC-CTCCTCAAAAGTCTGGGTATGGGCCTGA
gi|2 : GGGTGCC-----AAATGGGACTTCGATCTTTTT---GTAA--TCAAAATC-AATTCAATTTTGTGTAT-ACAAAATTGAATTCCGT---------GATA--CT-ATATTTGTCGTACAAAAACACGATATAGGTACTTGTT---TGATAACTTC-ATTATTGTAGTGACAAAAAT----------------GATGT---TT-----AT--ACAAAATC--A-TCTTTCAGTGGAC-AAT-ATA--ATTTTGGTCATT-AC-------AAATTCATTTT-----------------------G----TAGA---C-AA-------AAGACAAA------TTTGTCAAT-TAGA--TATGCAAATATTA--AACTTATT----TGCGCAC---AAAATTGATTTTTGTCATCTTATTTGCATTAGATA---------ACAAAAGT-CATTTTTGTG-AAACAAAT-TTGA--AT-------T----CGTACACAANNN--NNNNNNNNNN-----NNNNNNCGAAACTCTAACGACTTTTGTG-GTTCAGTTTTGTTAGACAAAGTG--------------AA-----AATTCAATTTTGT-------GTCAATTTTGTAT-------GCAAATTAGTGTACAGAATCCAA-ATATGGATATGCAAATGAAAACTATCACCATGTTTTTGTAAG
gi|7 : gGAGTTGT-ATCTTTTTTTGGTAA--TCAAAACCCAATT-----TTGTGTAC-ACAAA-TTGAATTCTGTC-A--TAACAAAATGTC-ATTTTTGTTACACAAAAGTA--TTGT---TGCA---TTTATAATAACTTTCATT--TGT-TG--------TTATTGAT-AA---------GT---TA-----T---ACGAAATT--AGTTTTTCAAT-GACCAGA-ATTCAATTTTTGTATT--ACG------AAATCAATTTTTGTCACAAACAAAATCCATTTTTGTAGACAAACTTCAAATTTTGTCATGCAAAATTCAATTTTGTCAATATATGTATGGCCAAATATTC--AATCTTTCATTTTGCATACCCAAAAATATACTTTTGTTA----------CTTAGTTGGCATAAATAACAAAAGTAAATTT-TGTGAGAT-AAATgaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtgattgatcagcagactatttcctaacttcctgtgagaagcgcatgctccagtatggaatctcatttgttaacaaatggggaggcaggttgtgccgattattgaaaagataatctgaa
gi|6 : gggtgcgaccgattgggC-ATATTTTT---GTGTGATAAAAATG-AATT-----TTATTTATGACGGAATTCAATTTTGTG-T--ACACAAAA--TT-GATTTTGTTT-ACGAAAATt
gi|6 : TTTC---GTAA--ACAAAATC-AATT-----TTGTGTAC-ACAAAATTGAATTCCGTCAT--AAATAAAA--TTCATTTTTATCACACAAAAATATGT----------TGTTTTATGATAAC-TTATTTT-TGTATTGCTA-----AGTTATA-GAAAGTTATATTTCAGTG-----G---ACAAAACTGAA-TTAT---GTAGACGAAATAAA--ATTTTTGTCATG-ACAAATTTTAAATCCATTTTTG-------------------TAGA---CAAAACTC-GATTTT-TC------AATTTTGTTT-----GT-TATG--TATGCAAATATTGAAAACTTATT----TGCATAC---AAAATAGACTTTTGTCA----------TCTAG-----------------TTTGCATTC---TG-AAACAAATA-TGA-TATTCGTACACAAAACGC-AAACTGAAATTCTCGCGATTTAAAATGTACTCTACATAC-----AATTTTGTGTGGACAA-------A-ATTCAGTT--------------ttgttttatgataacttatttttgtattgctaagttatagaaagttatatttcagtggacaaaactgaattatgtagacgaaataaaatttttgtcatgacaaattttaaatccatttttgtagacaaaactcgatttttcaattttgtttgttatgtatgcaaatattgaaaacttatttgcatacaaaatagacttttgtcatctagtttgcattctgaaacaaatatgatattcgtacacaaaacgcaaactgaaattctcgcgatttaaaatgtactctacatacaattttgtgtggacaaaattcagtttt
gi|2 : atAATTC-AATT-----TTGTATAC-ACAAAATTGAATTGATTT-TGATTACAAAA--tt
gi|13 : ggggtgccaaatgggacttcgatctTATGTTGTACACACCTGTTTTATAATAACTTCATCTC-TGTATTGAC---------TAAACAAAACT-AAATTT---TGCAAGCATCCACAAAATT--A-GGTTTCAGTGGATAAAA-ATC--GCTTATG---TCGACA------AAATTCATGTTTGTC----------------ccgtgatactatatttgtcgtacaaaaacacgatataggtacttgtttgataacttcattattgtagtgacaaaaatgatgtttatacaaaatcatctttcagtggacaatataattttggtcattacaaattcattttgtagacaaaagacaaatttgtcaattagatatgcaaatattaaacttatttgcgcacaaaattgatttttgtcatcttatttgcattagataacaaaagtcatttttgtgaaacaaatttgaattcgtacacaannnnnnnnnnnnnnnnnnncgaaactctaacgacttttgtggttcagttttgttagacaaagtgaaaattcaattttgtgtcaattttgtatgcaaattagtgtacagaatccaaatatggatatgcaaatgaaaactatcaccatgtttttgtaaggaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtgattgatcagcagactatttcctaacttcctgtgagaagcgcatgctccagtatggaatctcatttgttaacaaatggggaggcaggttgtgccgattattgaaaagataatctgaa
gi|11 : caatgAAAATGGAATTTTTACACGA--AA--GTTGAATAT--------GAGACGC-CAAATGAG--ACTATTGAT---------A---AGGATC------ATTTTTACGTG-ACGA-------AAACTGAATTTTTTGTTGTTAGATAAAAATGAA---AACTGAACA-CAT-AGTGAGTTTTGTCTAACAGAAGCAAATT-TTATATTTAATTTAGTTTATGGA
gi|2 : ATTGATCAGCAGAC--TATTTCCTAACTTCCTGTGAGAAGCGCATGCTCCAGTATGGAATCTCATTTGTTAACAAATGGGG-------------AGGCAGGTT--GTGCCGATTATT------GAAAAGA-T-AATCTGAAtatgcacttgaaaatttgtaagaatgccta
gi|3 : ggggtgccaaatgggacttcgatctttttgtaatcaaaatcaattcaattttgtgtatacaaaattgaattccgtgatactatatttgtcgtacaaaaacacgatataggtacttgtttgataacttcattattgtagtgacaaaaatgatgtttatacaaaatcatctttcagtggacaatataattttggtcattacaaattcattttgtagacaaaagacaaatttgtcaattagatatgcaaatattaaacttatttgcgcacaaaattgatttttgtcatcttatttgcattagataacaaaagtcatttttgtgaaacaaatttgaattcgtacacaannnnnnnnnnnnnnnnnnncgaaactctaacgacttttgtggttcagttttgttagacaaagtgaaaattcaattttgtgtcaattttgtatgcaaattagtgtacagaatccaaatatggatatgcaaatgaaaactatcaccatgtttttgtaaggaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtgTTTAT-ATTAAATAGAAA----------CTAGGCAGGGC--CTATCCACAGCA------GCAATGA-C-AAACCGAATGTTTTGTTAATCGGGATATCGAAATGTAACATT-ATTT---CCAG------GTCCGTAAACA-A-GGGG-GAAGT--------------CCC------CCC---CTG----G-AAAATGCAAAATATACT----ATTAAAGTAAGATTTTA--CTCTAAATATC-G--GATA-TT-AATTAG----TA-ATT--T--ACAGAA-----------TTTG---TTAACT----A-A-ATAT-TT---GAGGA-GCA--ATT--ATACGGAT---TTTA-TTATCCA------------TGA-CCG-TTG----T------ATCAAGTCAGTAC
gi|12 : gAAAGGAAATTCTATAAAACGAGGAAGGGC--CTATCAACTGCA------GCAATGA-C-AAAACGAATGTTTTGTCAATCGGGTTGTCG-AATGTAATGTTAATCTTCACCAGGCCCGTACCC-AGGGGGTG-GGGGTGCGAT--CGCA--tatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatcaatttgcctaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|16 : gggactcatagtAGATA--ATG---CTAGGCAGGAT--CTGTCCACTACC------GCAATGA-C-AACCTGAGTTTTTTGTTAATAAGGAT
gi|23 : gacgttgtttatatatttttccacaagtatTA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGG-C-AAACCGAGTATTTa
gi|15 : t---CTAAGCGGGGC--CTGTCGACTGCAGCACGCGCAATGA-C-AAACCGA-------GTAAATGGGGATGTGG-AATATAAC
gi|20 : tccaacctcttgatgtacgtgtaagctagc---CCAGGC-GGGTTACTGTCGATCGCA------GCAATGA-CAAAACCAAATGATTTGT
gi|5 : aaaatctcttAGGCAGGGC--CTGTTGACTGCA------GCAATAG-C-AAACCGAATGTTTTGTCAATCGGTATGTCA-AATGTAACATC-ATTT---CCAG------GCCC-----GT-ACGGGGTGCATT--TGCA--------------C--CCC---CTG----CATAAA-GCAAAATGTATTA----TTGAAGTCAGATTTTA--CTCTGAATATT-G--CCTA-TT-AATGAG----TA-ATT--T--ACAGAAATTC-----TCTTTGAATTTAAAG----AAA-ATCTGCT---GAAGACGCA--ATT-AAAATGGAT---TTTATTTATCCA------------TGA-CTG-TTG----T------ACCAAGTCAGAACCGT-A-AC-------------ACAGG---GGGGGGAGGGTG-TGTGCG-C----AT-TTGCAC---C--C-CCCTGCAAAA
gi|18 : tGGGC--ATATCGAC-GCA------GCAATGA-C-AGACCAAGTGTTTTATAAATCAGGGTATCG-AATGTAACATC-ATTT---CGAG------tgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|9 : CGCA------GCAATGAGC-GAAC--AAT-TTT----------GAAGT-------TAACACC-ATTT---CCAGCTGT--ACCC-AGGGGG-A-GGG-TATGTT--TGC----CC---CCCCC-C--CCC---CTA------------CAAAATGTACTG----TTAAAGCAAGATTTT---CTCTGAACCTTAG--CCTA-TTCAATTAG----TA-ATT--TTAGCAGAAATTC-----TCTTTCATTTCGAAAAAATACATGTATACTTAGGAAGATGTATTATTAAAAATGGGA---T---TTTATTTTTAAAT---TCATT-A-CTG-TTA----TATCATAATCAAGTTAGTA-CGT-GCAT-----GGGG---G--AGG---GGGGGg
gi|8 : aattttttaatatgaaccttattgatctA-T-AAATCGAATGGTTTGTCAATCGGCATGTCG-AATGTAACATA-ATTC---CCAG------GCCC-------------GT-CGTT--TGCACCCCA---CCCCCACTGCCC---CCG----GAcattcac
gi|4 : GCATTCCTGAA--ACATGGCCACCAGG-CCCTTACTGTTAAGGAAGAAGCAAAATGTA--ACTA-TTGAAGTAAGATTTTAACTACTGAATATT-GTCCCTAATT-AATTAGGCCCCATATTAAT--ACAAAAATTCATCTATTTTGGAATTTGAAG----A-A-ATCTGCA---GAAGACGCA--ATCAAATAC-GGCATTTTTATGTATCCA--------TGACC---CCGTTTG----TATACT--TTAA------ACCGC-ATACACTGGGGTG---GGTGGGGGTGGGGGGGGGGCTACTCGCAAC-AAAACAGCACAC---ATCC-CTtacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|14 : aggata---GAAAATGAA--ATT-AGTATAG-------TATTTAAT--TGAG-GAGTGATTGGTCCA-TTA----GA--ATCATTAGGTGAGAATTGTGATAT-----GTAAAATGAAAGG---GGGGGGGGGGGGGTTTacaaagaaggcaagatttactcctgtacatttgactatattatcaattgcctaaattatcgcactccctcttcaaaagtctgggtacgggtctgatgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|8 : ACGCA--ATT-AATACGGAT---TTTATTTATTCA--A----------GA-CTG-TTGTACTTATCATAATCATGTCAGGACCGT-ACAC-----CGGG---AAGAGG---GGGGGGGGGGcgaaa
gi|3 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccccggatATTTGC--CTAAAATAT-GCAC---CTCC-CTCCTCAgcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|8 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatcaATTTGC--CTAAAATATCGCACAGTCTCC-CTTCTCCATTGTCTGGGTACGGGCCTGAggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|21 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccccggatacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaATTTGC--CTAAAATCTCGCAC---CCCCTCTCCACAAAATTCTGGGTACAGGCattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|4 : atcaTTGC--CTAAATTATCGCAC----TCC-CTCTTCAAAAGTCTGGGTACGGGTCTGAtg
gi|5 : aggatagcattcctgaaacatggccaccaggcccttactgttaaggaagaagcaaaatgtaactattgaagtaagattttaactactgaatattgtccctaattaattaggccccatattaatacaaaaattcatctattttggaatttgaagaaatctgcagaagacgcaatcaaatacggcatttttatgtatccatgaccccgtttgtatactttaaaccgcatacactggggtgggtgggggtggggggggggctactcgcaacaaaacagcacacatccctacaaagaaggcaagatttactcctgtacatttgactatattatcaaC--CTAAAATATCACAC---CTCC-TTCTT--AAAGT-TGGGTACtgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ATTATTAAGTGGATTTTATTCTGATATTGACTAGTTATTTATTACCGGTAGATATAGAGATAATAAAATATTTAATCTGATGAAAATTTGCTGAGACGACAATTAAATTACAGGATTTATTTCTCACATGTCCATTTATCGTCAACCAGGATGTGTGGGGTGCTTTGACCTCCCTCTATAAAAAAAAAAGCAAATGAAGTTGAAAAGTCAATTCATCAGTATGTTAACTATTAATTATTTCTAAATTATGCACCTCCTCCAAAAAAGTTTGATCGGGCA
Unaligned ( gi|17 ): GGGTCTGATGTCGGCCTGCGTTTGAAAAGGGTTCACACCATATTAACAAAGGAAATTAATGATTATATGCGGAAAGTAATTAATGAGTAACAA
Unaligned ( gi|19 ): CAAATTGAGACTCTTCCGAAAATCTACATGAGAGAAAAGTTTGTGTGGACAAAATTCAGTTATG
Unaligned ( gi|22 ): AAAATAGACTTTTGTTATCTAGATTGCATTTAAATAACAAAAGTAAATTTTGCG
Unaligned ( gi|24 ): CGCATAGATAAAACATGCTTGCATACGTATACT
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111
lowQualScore : 4444444444 22222222 111 1 22222 22222 11 1 3333333 11111111111111111111111111111111111111 11 1 111 3333333 4444444444444444444444444444444444444444444444444444444444444444444444444444 1 11 222 1 1111 111 00000000000000000000000000000 1 33333333 111 5555555555555 1111 11 1 1 1 777777777777777777 11 3333333333 1 22 3333333333333333333333333333333 22 11 22222 444444444444 111111 111 22222222222 22222222 111 33333333333333333 1111111 1111 1 1111111111 1 22222 222222 111 7777777777777777777777777777777777777 11 111111 111 11
lowQualScore : 7777777777 00000000 777 0 55555 3 99999 0 33 0 4 9 22 8888888 0 8 3 1 99 8 11111111111111111111111111111111111111 11 8 1 3 6 1 8 222 99 1 2222222 0 3333333333333333333333333333333333333333333333333333333333333333333333333333 0 33 444 0 4444 2 444 1 1 44444444444444444444444444444 1 44 7 555 3 99 0 55555555 33 2 444 222 7777777777777 1 2222 1 00 0 0 2 3 1 333333333333333333 88 7 0 8888888888 1 0 1 2 44 222 11 88 7 3 4 1111111111111111111111111111111 77 4 88 66666 3 1 6 444444444444 55 1 000000 3 3 0 1 5 5 000 33333333333 77777777 000 4444 99999999999999999 5555555 5 0000 6 1 77 5 1 2 66 5 66 0 5 888 8888888888 0 66 66 6 55555 1 2 6 6 555555 1 1 000 0 1 5 77 5 77 77 666 1 4444444444444444444444444444444444444 3 11 3 777777 1 444 2 11 3 0 888 5
lowQualScore : .......... ........ ... . ..... . ..... . .. . . . .. ....... . . . . .. . ...................................... .. . . . . . . ... .. . ....... . ............................................................................ . .. ... . .... . ... . . ............................. . .. . ... . .. . ........ .. . ... ... ............. . .... . .. . . . . . .................. .. . . .......... . . . . .. ... .. .. . . . ............................... .. . .. ..... . . . ............ .. . ...... . . . . . . ... ........... ........ ... .... ................. ....... . .... . . .. . . . .. . .. . . ... .......... . .. .. . ..... . . . . ...... . . ... . . . .. . .. .. ... . ..................................... . .. . ...... . ... . .. . . ... .
lowQualScore : 7777777777 33333333 555 0 00000 2 00000 2 88 0 2 6 22 6666666 8 0 2 0 00 0 66666666666666666666666666666666666666 00 0 8 8 4 4 0 000 22 0 6666666 8 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 88 555 0 8888 0 000 4 4 44444444444444444444444444444 0 77 3 111 2 88 0 00000000 55 5 888 888 5555555555555 0 5555 0 88 0 0 8 2 0 111111111111111111 33 3 7 7777777777 0 7 0 3 77 777 33 33 3 0 0 0000000000000000000000000000000 55 0 00 55555 7 0 0 999999999999 55 5 555555 3 3 5 9 0 7 000 11111111111 33333333 111 6666 22222222222222222 0000000 0 6666 2 9 22 0 4 0 99 0 99 0 0 888 9999999999 0 99 99 7 88888 0 5 7 7 888888 0 0 000 1 7 7 99 7 99 99 777 4 8888888888888888888888888888888888888 3 00 2 222222 0 000 2 99 2 1 888 0
consensus : NNGGGCGC---C-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TTAACAAAA--TT-ATTTTTGTCGCACAAAAATATGTTGTACGCAC-TGTTTTATAATAAC-TTCATTT-TTG-TATTGACA----AG-TTAAA-AAAA--TAAATNTCG-----AT--ACAAAATT--A-TCTTTCAGTGGACAAAA-AT--AATTTTTGTCATNACA------AAATTCATTTTTGTCG--AC-AAA-C----TCGATTTT-T-CA-GAC-AA--TT-C--ATTTTGTC------AATT---------------ATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA----------NTTAGAT-GCAT--A--TAACAAAANTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCNAAATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTNTTANCAAATGGAAAT---A-TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGGGGG-A-GGGGTGCGTTTGC-A---CACCCCCA-C--CCCCTGG-AAAAAGCAAAATGTA-CT----ATTAAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA------TCTGCT---GAAGACG-CA--ATT-AA--TA--CGG-A-TTTTATTTATCC---AA--------TGA--CCG-TTGTA--T-AT----ATCAAGTCAGNACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
Reference ( family-1321 ) : NNGGGTGC---C-----AAATGGGG--CTNC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TNNACAAAA--TT-ATTTTTGTCGCACAAAAATACGTTGTA-GTACNTGTTTTATGATAAC-TTCANTT-NTG-TATTGACA----TG-TTAAA-AAAA--TANATNTTG-----AT--ACAAAATT--A-TTTTTCAGTGGACGAAA-AT--NATTTTTGTCATNACG------AAATCCATTTTTGTCT--GC-AAA-C----TCGATTTT-T-CA-GA--AA--TT-C--GTTTTGTC------AATT---------------ATGT-ATG--CAAATATT--NAA-CTT--A-TTTGCGTAC---AAAATAGACTTTTGTCA----------NTTAG------------TGACAAAANTGNATTTTTGCGGAACAAATGTTGA-TAT-------CGAGACGCCAAATGAG--NCTNNCGATT-----TGT----ACTCNANATNCANTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAACTNNGCA-CAT-AGTNAGTTTTGTNTAACAGAAGCAAATTANTGTACNNAATCCAGTNTATGGATATGCAAATGAAAACTATCACCATGTTTTTGTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGATCAGCAGAC--TATTTCCTAACTTCCTGTGAGAAGCGCATGCTCCAGTATGGAATCTCATTTGTTANCAAATGGAGAT---A-TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGGGGG-A-GGGGTGCGTTTGC-A---CACCCCCA-C--CCCCTGG-AAAAAGCAAAATGTA-CT----ATTGAAGTAAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA------TNTGCT---GAAGACG-CA--ATT-AA--TA--CGG-A-TTTTATTTATCC---AAT-----ATTGA--CCG-TTGTA--T-AT----ATCAAGTCAGNACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
gi|1 : GGGCGC---CTGAGTGAATTGAA--TTTC-ATCCTTTT---GTATTCAAAATC-AA-----TTTTATGTACACAAAATTGAATTCTGTT-TTTACAAAA--TT-ATTTTTGTTTCACAAAGATATGTTATACATGCATGTTTCATAATAAC-TTTAATT-ATG-TACGGACAAAAATAATTAAA-AAAA---AAATGTTG-----A---ACAAAATT--A-TCTTCCAGTAGATAAAA-AT--TATTTTTGTTTTCATA------AAATTCATTTTTGTCTTCGC-AAAAT----TCAATTTTGT-CATGATAAA--TTTC--CTTTTATC------AATT---------------ATATTAGG--CAAATATT---AA-CCT--A-TCTGTATAC---AAAATTTACTTTTGCAA----------ATTAG--------------ACAAAATTGAATTTGTATGGAA--AATGTTGA-TAT-------CGAGACGCCACATGAG--CCTAGTGATT-----CGC----ACTCAAAATCCATTTTCGTGT-GGACAAAGACTAAGTT--------------A---AAAATT--AATTCAATTTTATGTCATTAGTCAATTTTGTCTGACAGAAGTAAATT-TTGTATTGAAATTAGTTTACAGAC-TCCTAACGAAAACACTCATCACAATTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATTAGCAGACATCATATC--GACTTCCTGTGAGAGGCGCATGCTC-----TGGAATCTCATTTATTATCAAAAGGAAATC--A-TA---CCAGGCAGGGC--CTGTCGACCGCA------GCAATGA-C-AAACCGAATGTTTCGTCATTCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----A------CCC-------TGGGGG-A-GGGGTGCATTTGCAA---CACCCCCA-T--CCCCTGGAAAAAAGCAAAATGTA-CTACTAATTAAAGTAAGATTTTG-CG-CTCAAAAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-ACAA------TCTGCT---GAAAATG-CA--ATT-AA--TA--CAG-G-CTTCATTTACCCATGAGTGAGTGACTGA--CCG-TTGTA--TCATA---ATCAAGTCAGGACCG--TATAC-GGA--GGAAAGG---GGGGGGGGGGTGATTTGC--CTAAAATATCGCAC---CTTC-CTCCTCAAAAGTCTGGGTATGGGCCTGA
gi|10 : caA-TT----ATT-AAGTG-GATTTTA-TT-CTGA-TAT--T-G--ACTAGTT-ATTTATTACCGG----TAGATA--T--AGAGATAATAAAA---TATTT-AATCTGATG-A-AAA-----TTTGCT---GA-GACGACA--ATT-AAATTA--CAG-G-ATTTATTTCTC
gi|11 : AAAATGGAATTTTTAC---ACGAAAGTTGAATAT--------GAGACGCCAAATGAG--ACTATTGAT-----------------AAGGATCATTTTTACGT-G-ACGAAAACTGAATTTTTTGTTGTTAGATA---AAAATG--AA---AACTGAACA-CAT-AGTGAGTTTTGTCTAACAGAAGCAAATT-TTATATTTAATTTAGTTTATGGATATGCACTTGAAAATTacatgtccatttatcgtcaaccaggatgtgtggggtgctttgacctccctctataaaaaaaaaagcaaatgaagttgaaaagtcaattcatcagtatgttaactattaattatttctaaattatgcacctcctccaaaaaagtttgatcgggca
gi|12 : TAGTAAA-GGAAATTCTA-TAAAACGAGGAAGGGC--CTATCAACTGCA------GCAATGA-C-AAAACGAATGTTTTGTCAATCGGGTTGTCGAA-TGTAATGTTAATCTTCACCAG----GCCCGTACCC-------AGGGGGTG-GGGGTGCGATCGC-A---tgtaagaatgccta
gi|13 : gggactcaTATGTTGTACACACCTGTTTTATAATAAC-TTCATCT-CTG-TATTGAC---------TAAACAAAAC-TAAATTTTGCAAGCATCCACAAAATT--A-GGTTTCAGTGGATAAAA-AT--CGCTTATGTC--GACA------AAATTCATGTTTGTC
gi|15 : caatg---CTAAGCGGGGC--CTGTCGACTGCAGCACGCGCAATGA-C-AAACCGA-------GTAAATGGGGATGTGGAA-TATAAC
gi|16 : tccaacctcttgatgtacgtgtaagctagcATTTTTCCACAAGTATAGAT---AATG---CTAGGCAGGAT--CTGTCCACTACC------GCAATGA-C-AACCTGAGTTTTTTGTTAATAAGGAT
gi|18 : gacgttgtttatatGGGC--ATATCGAC-GCA------GCAATGA-C-AGACCAAGTGTTTTATAAATCAGGGTATCGAA-TGTAACATC-ATTT---CGAG----G------a
gi|2 : GGGTGC---C-----AAATGGGA--CTTCGATCTTTTT---GTAATCAAAATC-AATTCAATTTTGTGTATACAAAATTGAATTCCGT-------GATA--CT-ATATTTGTCGTACAAAAACACGATATAGGTACTTGTT---TGATAAC-TTCATTA-TTG-TAGTGAC------------A-AAAA--T-GATGTTT-----AT--ACAAAATC--A-TCTTTCAGTGGAC-AAT-AT--AATTTTGGTCATTAC-------AAATTCA-TTTTGTAG--AC-AAA-------AGA-------CA-AA--------------TTTGTC------AATT---------------AGAT-ATG--CAAATATT--AAA-CTT--A-TTTGCGCAC---AAAATTGATTTTTGTCATCTTATTTGCATTAGA-----------TAACAAAAGT-CATTTTTGTGAAACAAAT-TTGA-ATT-------CG-TACACAANNNNNN--NNNNNNNNNN-----NNNCGAAACTCTAA--CGACTTTT--GT-G-GTTCAG-TTTTGTT--------------AGACAAAGTGAAAATTCAATTTTGT-------GTCAATTTTGTAT-------GCAAATTAGTGTACAGAATCCAA-ATATGGATATGCAAATGAAAACTATCACCATGTTTTTGTAAG
gi|2 : gATTGATCAGCAGAC--TATTTCCTAACTTCCTGTGAGAAGCGCATGCTCCAGTATGGAATCTCATTTGTTAACAAATGGGG--------------AGGCAGGTT--GTGCCGATTATT------GAAAAGA-T-AATCTGAAgaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtgattgatcagcagactatttcctaacttcctgtgagaagcgcatgctccagtatggaatctcatttgttaacaaatggggaggcaggttgtgccgattattgaaaagataatctgaa
gi|20 : ggggtgccaaatgggacttcgatctttttgtaatcaaaatcaattcaattttgtgtatacaaaattgaattccgtgatactatatttgtcgtacaaaaacacgatataggtacttgtttgataacttcattattgtagtgacaaaaatgatgtttatacaaaatcatctttcagtggacaatataattttggtcattacaaattcattttgtagacaaaagacaaatttgtcaattagatatgcaaatattaaacttatttgcgcacaaaattgatttttgtcatcttatttgcattagataacaaaagtcatttttgtgaaacaaatttgaattcgtacacaannnnnnnnnnnnnnnnnnncgaaactctaacgacttttgtggttcagttttgttagacaaagtgaaaattcaattttgtgtcaattttgtatgcaaattagtgtacagaatccaaatatggatatgcaaatgaaaactatcaccatgtttttgtaaggaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtg---CCAGGC-GGGTTACTGTCGATCGCA------GCAATGA-CAAAACCAAATGATTTGT
gi|21 : aaaatctcttCAATTTGC--CTAAAATCTCGCAC---CCCCTCTCCACAAAATTCTGGGTACAGGC
gi|22 : at---AAAATAGACTTTTGTTA----------TCTAGATTGCATTTAAATAACAAAAGTAAA-TTTTGCGtg
gi|23 : -TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGG-C-AAACCGAGTATTT
gi|3 : tTATTAAATAGAAA-----------CTAGGCAGGGC--CTATCCACAGCA------GCAATGA-C-AAACCGAATGTTTTGTTAATCGGGATATCGAAATGTAACATT-ATTT---CCAG----G------TCCGTAAACAAGGGGG-A-AG--------------------TCC--C--CCCCTGG-AAAATGCAAAATATA-CT----ATTAAAGTAAGATTTTA-CT-CTAAATAT--C-G--GATA-TT-A---ATTA---G----TA-ATT--T--ACAGA-A-----------TTTG---TTAACT-A-AA------TAT-TT---GAGGA-G-CA--ATT--A--TA--CGG-A-TTTTA-TTATCC---A---------TGA--CCG-TTG-------T----ATCAAGTCAGTAC
gi|3 : gtttaAAATGCA-CT----AT-AAAGTCAGAATTCA-CT-CTGTGCAT--T-G--CCTA-TT-A---AT----------CA-ATT--T--GCtatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatcaatttgcctaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|3 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcCAATTTGC--CTAAAATAT-GCAC---CTCC-CTCCTCActaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatGG-AAGAAGCAAAATGTAACT----ATTGAAGTAAGATTTTAACTACTGAATAT--T-GTCCCTAATT-A---ATTA---GGCCCCATATTAAT--ACAAA-AATTCATCTATTTTGGAATTTGAAG-A-AA------TCTGCA---GAAGACG-CA--ATCAAA--TA--CGGCATTTTTATGTATCC---A---------TGACCCCGTTTGTA--T-AC----TTTAA------ACCGCATACACTGGGGTGGGTGGGGGTGGGGGGGGGGCTACTCGCAAC-AAAACAGCACAC---ATCC-CTggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : aggatagcattcctgaaacatggccaccaggcccttactgttaaTTGC--CTAAATTATCGCAC----TCC-CTCTTCAAAAGTCTGGGTACGGGTCTGAacaaagaaggcaagatttactcctgtacatttgactatattatcaattgcctaaattatcgcactccctcttcaaaagtctgggtacgggtctgatgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : aggatagcattcctgaaacatggccaccaggcccttactgttaaggaagaagcaaaatgtaactattgaagtaagattttaactactgaatattgtccctaattaattaggccccatattaatacaaaaattcatctattttggaatttgaagaaatctgcagaagacgcaatcaaatacggcatttttatgtatccatgaccccgtttgtatactttaaaccgcatacactggggtgggtgggggtggggggggggctactcgcaacaaaacagcacacatccctacaaagaaggcaagatttactcctgtacatttgactatattatcaaTAGGCAGGGC--CTGTTGACTGCA------GCAATAG-C-AAACCGAATGTTTTGTCAATCGGTATGTCAAA-TGTAACATC-ATTT---CCAG----G------CCC-----------GT-ACGGGGTGCATTTGC-A---C-----------CCCCTGC-ATAAAGCAAAATGTA-TT----ATTGAAGTCAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATGA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTAAAGAA-AA------TCTGCT---GAAGACG-CA--ATT-AA--AA--TGG-A-TTTTATTTATCC---A---------TGA--CTG-TTG-------T----ACCAAGTCAGAACCG--TA-AC--------ACAGG---GGGGGGAGGGTG-TGTGCG-C----AT-TTGCAC---CCCC-CT--GCAAAAtgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : C-------AGGGGG-G-GGAGGGTGTGTGC-G---CATTTGCACC--CCCCT--------GCAAAATGCA-CT----GTCACAGTCAGATTTCT-CT-CT---TACCGT-G--ACTA-TT-A---AT----------CA-ATT--T--GCtgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|5 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacaC--CTAAAATATCACAC---CTCC-TTCTT--AAAGT-TGGGTACGctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|6 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacacaggggggggagggtgtgtgcgcatttgcacccccctgcaaaatgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcaTTTTC---GTAAACAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTCATAAATAAAA--TTCATTTTTATCACACAAAAATATGT----------TGTTTTATGATAAC-TT-ATTT-TTG-TATTGCTA----AG-TTATA-GAAAGTTATATTTCA-----GTGGACAAAACTGAA-TTAT---GTAGACGAAATAA--AATTTTTGTCATGACAAATTTTAAATCCATTTTTGTAG--ACAAAA-C----TCGATTTT-T-CA---------------ATTTTGTT------TGTT---------------ATGT-ATG--CAAATATTGAAAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA----------TCTAG------------T-------TTGCATTCT---GAAACAAATA-TGA-TATTCGTACACAAAACGCAAACTGAAATTCTCGCGATTTAAAATGT----ACTCTACATACAATTTTGTGTGG-AC-AAAATTCAGTT--------------tcgggtgttgatttct
gi|7 : aGGGTGCGACC-----GATTGGGGAGTTGT-ATCTTTTTTTGGTAATCAAAACCCAA-----TTTTGTGTACAC-AAATTGAATTCTGTC-ATAACAAAATGTC-ATTTTTGTTACACAAAAGTA--TTGTT-GCA-----TTTATAATAACTTTCATTTGTTGTTATTGATA----AG-TT------------------------AT--ACGAAATT--AGTTTTTCAAT-GACCAGA-ATTCAATTTTTGT-ATTACG------AAATCAATTTTTGTC---AC-AAA-CAAAATCCATTTT-TGTA-GAC-AAACTT-CAAATTTTGTCATGCAAAATTCAATTTTGTCAATATATGT-ATGGCCAAATATT--CAATCTTTCATTTTGCATACCCAAAAATATACTTTTGTTA----------CTTAGTTGGCATAAA--TAACAAAAGTAAA-TTTTGTGAGATAAATtt
gi|8 : A-T-AAATCGAATGGTTTGTCAATCGGCATGTCGAA-TGTAACATA-ATTC---CCAG----G------CCC-------------------GT-CGTTTGC-ACCCCACCCCCA-CTGCCCCCGG-At
gi|8 : CC---GGATACG-CA--ATT-AA--TA--CGG-A-TTTTATTTATTC---AA---------GA--CTG-TTGTACTT-ATCATAATCATGTCAGGACCG--TACAC-CGG--GAAGAGG---GGGGGGGGGGtacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|8 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccCAATTTGC--CTAAAATATCGCACAGTCTCC-CTTCTCCATTGTCTGGGTACGGGCCTGAgcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|9 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccccggatacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatGCA------GCAATGAGC-GAAC--AAT--TTTG--AA-------GT-------TAACACC-ATTT---CCAGCTGTA------CCC-------AGGGGG-A-GGG-TATGTTTGC-C---C-CCCCC--C--CCCCTA--------CAAAATGTA-CT----GTTAAAGCAAGATTTT--CT-CTGAACCT--TAG--CCTA-TTCA---ATTA---G----TA-ATT--TTAGCAGA-AATTC-----TCTTTCATTTCGAAA-A-AATACATGTATACTTAGGAAGATG-TATTATT-AA--AAATGGG-A-TTTTATTT-TTA---AATTC---ATT-A--CTG-TTATA--TCATA---ATCAAGTTAGTA-CG--TGCAT-GGG--GGAGGGG---GGGattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAAATGAAATTAGTATAGTATTTAATTGAGGAGTGATTGGTCCATTAGAATCATTAGGTGAGAATTGTGATATGTAAAATGAAAGGGGGGGGGGGGGGGTTTCGAAA
Unaligned ( gi|17 ): GGGTCTGATGTCGGCCTGCGTTTGAAAAGGGTTCACACCATATTAACAAAGGAAATTAATGATTATATGCGGAAAGTAATTAATGAGTAACAA
Unaligned ( gi|19 ): CAAATTGAGACTCTTCCGAAAATCTACATGAGAGAAAAGTTTGTGTGGACAAAATTCAGTTATG
Unaligned ( gi|24 ): CGCATAGATAAAACATGCTTGCATACGTATACT
Alignments
lowQualScore : 1 33333 11 1 111 1 22222 22222 1111 4444444444 11 666666666666666666666666666666666666666666 22 1111 222222 1111 1 77777777777777777777777777777 1 1 11 111111 1111 111 7777777777777777 1 33333333 111 5555555555555 111111 11 1 1 1 777777777777777777 11 3333333 1 1 11 11 22222 444444444444 111111 111 22222222222 33333333 11111 5555555555555555 1111111 1111 1 1111111111 1 22222 2222222 111 1111 4444444444444444444444444444444444444 11 111111 111 11
lowQualScore : 3 33333 88 3 777 0 55555 3 77777 0 8888 4 8 22 9999999999 3 11 8 8 0 888888888888888888888888888888888888888888 22 1 999 8 4444 6 1 8 333333 0 0 9999 0 77777777777777777777777777777 3 0 0 33 555555 4444 444 1 1 99 4444444444444444 3 3 7 2 3 99 0 55555555 33 1 444 0 7777777777777 4 999999 1 00 0 0 2 3 1 333333333333333333 88 7 5555555 2 3 7 0 7 0 1 1 88 1 88 66666 1 3 1 6 444444444444 55 1 000000 3 3 0 1 5 5 000 33333333333 33333333 888 11111 3 77 1111111111111111 8888888 5 0000 1 77 5 1 2 66 5 66 0 5 888 8888888888 0 66 66 6 55555 1 2 6 6 6 0000000 1 000 0 1 5 77 5 77 77 666 2222 8888888888888888888888888888888888888 4 3 11 3 777777 1 444 2 11 3 0 888 5
lowQualScore : . ..... .. . ... . ..... . ..... . .... . . .. .......... . .. . . . .......................................... .. . ... . .... . . . ...... . . .... . ............................. . . . .. ...... .... ... . . .. ................ . . . . . .. . ........ .. . ... . ............. . ...... . .. . . . . . .................. .. . ....... . . . . . . . . .. . .. ..... . . . . ............ .. . ...... . . . . . . ... ........... ........ ... ..... . .. ................ ....... . .... . .. . . . .. . .. . . ... .......... . .. .. . ..... . . . . . ....... . ... . . . .. . .. .. ... .... ..................................... . . .. . ...... . ... . .. . . ... .
lowQualScore : 3 33333 33 3 555 0 00000 2 00000 2 5555 2 0 22 8888888888 8 22 0 0 8 666666666666666666666666666666666666666666 00 4 444 0 2222 0 0 0 000000 8 8 0000 0 00000000000000000000000000000 2 0 0 88 000000 8888 000 4 4 00 0000000000000000 3 7 3 2 2 88 0 00000000 55 0 888 8 0000000000000 5 000000 2 88 0 0 8 2 0 111111111111111111 33 3 7777777 0 3 3 7 3 7 0 0 55 0 00 55555 0 8 0 0 999999999999 55 5 555555 3 3 5 9 0 7 000 11111111111 33333333 000 44444 0 99 2222222222222222 6666666 0 6666 0 22 0 4 0 99 0 99 0 0 888 9999999999 0 99 99 7 88888 0 5 7 7 7 2222222 0 000 1 7 7 99 7 99 99 777 1111 3333333333333333333333333333333333333 3 0 00 2 222222 0 000 2 99 2 1 888 0
consensus : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AATT-----TTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-T-GTTTTATAATAACTT-CATTT-TTGT-ATTGACAAG-----TTA-AA-GAAA--TAAATTT--CG-----AT--A--CAAAATT-AATCTTTCAGTAG-ACGAAA-ATAATTTTTGTCATNA-CA------AAATTCATTTTTGTA---GAC-AAACTC--GATTTTGTCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-CTTAGT-T-GCATTA--ATAACAAAAGTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCTAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTATTANCAAATGGAAAT---A-TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGGGGG-A-GGG---GTGCG--TTTGC-A---C-CCCCC-C--CCCCTGG-AAAAAGCAAAATGTA-CT----ATTAAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TA--CGG-A-TTTTATTT----ATCC---A---------TGA--CCG-TTGTA--T-AT----ATCAAGTCAGGACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
Reference ( family-1321 ) : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AATT-----TTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-T-GTTTTATAATAACTT-CATTT-TTGT-ATTGACAAG-----TTA-AA-AAAA--TAAATNT--CG-----AT--A--CAAAATT--ATCTTTCAGTGG-ACAAAA-ATAATTTTTGTCATNA-CA------AAATTCATTTTTGTC---GAC-AAACTC--GATTTT-TCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-NTTAGA-T-GCAT----ATAACAAAANTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCNAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTNTTANCAAATGGAAAT---A-TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGGGGG-A-GGG---GTGCG--TTTGC-A---CACCCCCAC--CCCCTGG-AAAAAGCAAAATGTA-CT----ATTAAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TA--CGG-A-TTTTATTT----ATCCA--A---------TGA--CCG-TTGTA--T-AT----ATCAAGTCAGNACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
gi|1 : GGGCG-CCTGAGTGAATTGAA--TTTC-ATCCTTTT---GTATTCAAAATC-AATT-----TTATGTACACAAAATTGAATTCTGTT-TTTACAAAAT--T-ATTTTTGTTTCACAAAGATAT-GTTATACATGCA--T-GTTTCATAATAACTT-TAATT-ATGT-ACGGACAAAAATAATTA-AA-AAAA---AAATGT--TG-----A---A--CAAAATT--ATCTTCCAGTAG-ATAAAA-ATTATTTTTGTTTTCA-TA------AAATTCATTTTTGTCTTCGCA-AAATTC--AATTTTGTCATGAT--AAATTTC-CTTTTATCAAT-TATATTAGG--CAAATATT--AA--CCT--A-TCTGTATAC---AAAATTTACTTTTGCAA-ATTAGA---------------CAAAATTGAATTTGTATGGAA--AATGTTGA-TAT-------CGAGACGCCACATGAG--CCTAGTGATT-----CGC----ACTCAAA--ATCCATTTTCGTGT-GGACAAAGACTAAGTT--------------A---AAAATT--AATTCAATTTTATGTCATTAGTCAATTTTGTCTGACAGAAGTAAATT-TTGTATTGAAATTAGTTTACAGAC-TCCTAACGAAAACACTCATCACAATTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATTAGCAGACATCATATC--GACTTCCTGTGAGAGGCGCATGCTC-----TGGAATCTCATTTATTATCAAAAGGAAATC--A-TA---CCAGGCAGGGC--CTGTCGACCGCA------GCAATGA-C-AAACCGAATGTTTCGTCATTCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----A------CCC-------TGGGGG-A-GGG---GTGCA--TTTGCAA---CACCCCCAT--CCCCTGGAAAAAAGCAAAATGTA-CTACTAATTAAAGTAAGATTTTG-CG-CTCAAAAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-ACAA-T-C-----TGCT---GAAAATG-CA--ATT-AA--TA--CAG-G-CTTCATTT----ACCCATGAGTGAGTGACTGA--CCG-TTGTA--TCATA---ATCAAGTCAGGACCG--TATAC-GGA--GGAAAGG---GGGGGGGGGGTGATTTGC--CTAAAATATCGCAC---CTTC-CTCCTCAAAAGTCTGGGTATGGGCCTGA
gi|10 : caA-TT----ATTAA-GTG-GATTTTA-TT-CTGA-TAT--T-G--ACTAGTT-ATTTATTACCGG----TAGATA--T--AGAGATAATAAAA---TATTT-AATCTGATG-A-AAAT-T-----TGCT---GA-GACGACA--ATT-AAATTA--CAG-G-ATTTATTT----CTCAC--A---------TGT--CCA-TT-TA--T--C----GTCAA-CCAGGA
gi|11 : AAAATGGAATTTTTAC---ACGAAAGTTGAATAT--------GAGACGCCAAATGAG--ACTATTGAT------------------AAGGATC-ATTTTTACGT-G-ACGAAAACTGAATTTTTTGTTGTTAGATA---AAAATG--AA---AACTGAACA-CAT-AGTGAGTTTTGTCTAACAGAAGCAAATT-TTATATTTAATTTAGTTTATGGATATGCACTTGAAAATTtgtgtggggtgctttgacctccctctataaaaaaaaaagcaaatgaagttgaaaagtcaattcatcagtatgttaactattaattatttctaaattatgcacctcctccaaaaaagtttgatcgggca
gi|12 : TAGTAAA-GGAAATTCTA-TAAAACGAGGAAGGGC--CTATCAACTGCA------GCAATGA-C-AAAACGAATGTTTTGTCAATCGGGTTGTCGAA-TGTAATGTTAATCTTCACCAG----GCCCGTACCC-------AGGGGGTG-GGG---GTGCG--ATCGC-A---tgtaagaatgccta
gi|13 : gggactcaTAT-GTTGTAC--ACACCT-GTTTTATAATAACTT-CATCT-CTGT-ATTGAC---------TA-AACAAAAC-TAAATTT--TGCAAGCATCCA--CAAAATT--AGGTTTCAGTGG-ATAAAA-ATCGCTTATGTC--GA-CA------AAATTCATGTTTGTC---
gi|15 : caatg---CTAAGCGGGGC--CTGTCGACTGCAGCACGCGCAATGA-C-AAACCGA-------GTAAATGGGGATGTGGAA-TATAAC
gi|16 : tccaacctcttgatgtacgtgtaagctagcATTTTTCCACAAGTATAGAT---AATG---CTAGGCAGGAT--CTGTCCACTACC------GCAATGA-C-AACCTGAGTTTTTTGTTAATAAGGAT
gi|18 : gacgttgtttatatGGGC--ATATCGAC-GCA------GCAATGA-C-AGACCAAGTGTTTTATAAATCAGGGTATCGAA-TGTAACATC-ATTT---CGAG----G------a
gi|2 : GGGTG-CC-----AAATGGGA--CTTCGATCTTTTT---GTAATCAAAATC-AATTCAATTTTGTGTATACAAAATTGAATTCCGT-------GATAC--T-ATATTTGTCGTACAAAAACAC-GATATAG--GTAC-TTGTTT---GATAACTT-CATTA-TTGT-AGTGACAA--------------AAA--TGA-TGT--TT-----AT--A--CAAAATC--ATCTTTCAGTGG-ACAATA--TAATTTTGGTCATTA-CA------AA-TTCATTTT-GTA---GAC-AAA--------------A-GAC--AA------ATTT-GTCAAT-TAGAT-ATG--CAAATATT--AAA-CTT--A-TTTGCGCAC---AAAATTGATTTTTGTCATCTTATT-T-GCATTAG-ATAACAAAAGT-CATTTTTGTGAAACAAAT-TTGA-ATT-------CG-TACACAANNNNNN--NNNNNNNNNN-----NNNCGAAACTCTAA----CGACTTTT--GT-G-GTTCAG-TTTTGTT--------------AGACAAAGTGAAAATTCAATTTTGT-------GTCAATTTTGTAT-------GCAAATTAGTGTACAGAATCCAA-ATATGGATATGCAAATGAAAACTATCACCATGTTTTTGTAAG
gi|2 : gATTGATCAGCAGAC--TATTTCCTAACTTCCTGTGAGAAGCGCATGCTCCAGTATGGAATCTCATTTGTTAACAAATGGGG--------------AGGCAGGTT--GTGCCGATTATT------GAAAAGA-T-AATCTGAAgaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtgattgatcagcagactatttcctaacttcctgtgagaagcgcatgctccagtatggaatctcatttgttaacaaatggggaggcaggttgtgccgattattgaaaagataatctgaa
gi|20 : ggggtgccaaatgggacttcgatctttttgtaatcaaaatcaattcaattttgtgtatacaaaattgaattccgtgatactatatttgtcgtacaaaaacacgatataggtacttgtttgataacttcattattgtagtgacaaaaatgatgtttatacaaaatcatctttcagtggacaatataattttggtcattacaaattcattttgtagacaaaagacaaatttgtcaattagatatgcaaatattaaacttatttgcgcacaaaattgatttttgtcatcttatttgcattagataacaaaagtcatttttgtgaaacaaatttgaattcgtacacaannnnnnnnnnnnnnnnnnncgaaactctaacgacttttgtggttcagttttgttagacaaagtgaaaattcaattttgtgtcaattttgtatgcaaattagtgtacagaatccaaatatggatatgcaaatgaaaactatcaccatgtttttgtaaggaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtg---CCAGGC-GGGTTACTGTCGATCGCA------GCAATGA-CAAAACCAAATGATTTGT
gi|21 : aaaatctcttCAATTTGC--CTAAAATCTCGCAC---CCCCTCTCCACAAAATTCTGGGTACAGGC
gi|22 : at---AAAATAGACTTTTGTTA-TCTAGATT-GCATTTAAATAACAAAAGTAAA-TTTTGCGtg
gi|23 : -TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGG-C-AAACCGAGTATTT
gi|3 : tTTTAT-ATTAAATAGAAA-----------CTAGGCAGGGC--CTATCCACAGCA------GCAATGA-C-AAACCGAATGTTTTGTTAATCGGGATATCGAAATGTAACATT-ATTT---CCAG----G------TCCGTAAACAAGGGGG-A-AG-------------------------TCC-C--CCCCTGG-AAAATGCAAAATATA-CT----ATTAAAGTAAGATTTTA-CT-CTAAATAT--C-G--GATA-TT-A---ATTA---G----TA-ATT--T--ACAGA-A-----------TTTG---TTAACT-A-AA-T-A-----T-TT---GAGGA-G-CA--ATT--A--TA--CGG-A-TTTTA-TT----ATCC---A---------TGA--CCG-TTG-------T----ATCAAGTCAGTAC
gi|3 : gAAATGCA-CT----AT-AAAGTCAGAATTCA-CT-CTGTGCAT--T-G--CCTA-TT-A---AT----------CA-ATT--T--GCtatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatcaatttgcctaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|3 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcCAATTTGC--CTAAAATAT-GCAC---CTCC-CTCCTCActaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatGG-AAGAAGCAAAATGTAACT----ATTGAAGTAAGATTTTAACTACTGAATAT--T-GTCCCTAATT-A---ATTA---GGCCCCATATTAAT--ACAAA-AATTCATCTATTTTGGAATTTGAAG-A-AA-T-C-----TGCA---GAAGACG-CA--ATCAAA--TA--CGGCATTTTTATGT----ATCC---A---------TGACCCCGTTTGTA--T-AC----TTTAA------ACCGCATACACTGGGGTGGGTGGGGGTGGGGGGGGGGCTACTCGCAAC-AAAACAGCACAC---ATCC-CTggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : aggatagcattcctgaaacatggccaccaggcccttactgttaaTTGC--CTAAATTATCGCAC----TCC-CTCTTCAAAAGTCTGGGTACGGGTCTGAacaaagaaggcaagatttactcctgtacatttgactatattatcaattgcctaaattatcgcactccctcttcaaaagtctgggtacgggtctgatgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : aggatagcattcctgaaacatggccaccaggcccttactgttaaggaagaagcaaaatgtaactattgaagtaagattttaactactgaatattgtccctaattaattaggccccatattaatacaaaaattcatctattttggaatttgaagaaatctgcagaagacgcaatcaaatacggcatttttatgtatccatgaccccgtttgtatactttaaaccgcatacactggggtgggtgggggtggggggggggctactcgcaacaaaacagcacacatccctacaaagaaggcaagatttactcctgtacatttgactatattatcaaTAGGCAGGGC--CTGTTGACTGCA------GCAATAG-C-AAACCGAATGTTTTGTCAATCGGTATGTCAAA-TGTAACATC-ATTT---CCAG----G------CCC-----------GT-ACGGG---GTGCA--TTTGC-A---C----------CCCCTGC-ATAAAGCAAAATGTA-TT----ATTGAAGTCAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATGA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTAAAGAA-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--AA--TGG-A-TTTTATTT----ATCC---A---------TGA--CTG-TTG-------T----ACCAAGTCAGAACCG--TA-AC--------ACAGG---GGGGGGAGGGTG-TGTGCG-C----AT-TTGCAC---CCCC-CT--GCAAAAtgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : GGGGG-A-GGGTGTGTGCGCATTTGC-A---C-------C--CCCCTG--------CAAAATGCA-CT----GTCACAGTCAGATTTCT-CT-CT---TACCGT-G--ACTA-TT-A---AT----------CA-ATT--T--GCtgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|5 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacacagggC--CTAAAATATCACAC---CTCC-TTCTT--AAAGT-TGGGTACGctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|6 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacacaggggggggagggtgtgtgcgcatttgcacccccctgcaaaatgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcaTTTTC---GTAAACAAAATC-AATT-----TTGTGTACACAAAATTGAATTCCGTCATAAATAAAAT--TCATTTTTATCACACAAAAATAT-GT------------T-GTTTTATGATAACTT--ATTT-TTGT-ATTGCTAAG-----TTA-TA-GAAAGTTATATTT--CA-----GTGGA--CAAAACTGAATTAT---GTAG-ACGAAATAAAATTTTTGTCATGA-CAAATTTTAAATCCATTTTTGTA---GACAAAACTC--GATTTT-TCA--------------ATTTTGTTTGT-TATGT-ATG--CAAATATTGAAAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-TCTAGT-T-------------------TGCATTCT---GAAACAAATA-TGA-TATTCGTACACAAAACGCAAACTGAAATTCTCGCGATTTAAAATGT----ACTCTAC--ATACAATTTTGTGTGG-AC-AAAATTCAGTT--------------tcgggtgttgatttct
gi|7 : aGCGACC-----GATTGGGGAGTTGT-ATCTTTTTTTGGTAATCAAAACCCAATT-----TTGTGTACACAAA-TTGAATTCTGTC-ATAACAAAATGTC-ATTTTTGTTACACAAAAGTATTGTTGCA------------TTTATAATAACTTTCATTTGTTGTTATTGATAAG-----TTATAC-GAAA--TTAGTTTTTCA-----AT--GACCAGAATTCAATTTTT--GTATTACGAAA-TCAATTTTTGTCACAAACA------AAATCCATTTTTGTA---GAC-AAACTTCAAATTTTGTCA-TGCAAAA--TTCAATTTTGTCAATATATGT-ATGGCCAAATATT--CAATCTTTCATTTTGCATACCCAAAAATATACTTTTGTTA-CTTAGT-TGGCATAA--ATAACAAAAGTAAA-TTTTGTGAGATAAATtt
gi|8 : gggtA-T-AAATCGAATGGTTTGTCAATCGGCATGTCGAA-TGTAACATA-ATTC---CCAG----G------CCC----------------------GT-CG--TTTGC-ACCCCACCCCCACTGCCCCCGG-At
gi|8 : CC---GGATACG-CA--ATT-AA--TA--CGG-A-TTTTATTT----ATTCA--A----------GA--CTG-TTGTACTT-ATCATAATCATGTCAGGACCG--TACAC-CGG--GAAGAGG---GGGGGGGGGGtacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|8 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccCAATTTGC--CTAAAATATCGCACAGTCTCC-CTTCTCCATTGTCTGGGTACGGGCCTGAgcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|9 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccccggatacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatGCA------GCAATGAGC-GAAC--AAT--TTTG--AA-------GT-------TAACACC-ATTT---CCAGCTGTA------CCC-------AGGGGG-A-GGG----TATG--TTTGC-C---C-CCCCC-C--CCCCTA--------CAAAATGTA-CT----GTTAAAGCAAGATTTT--CT-CTGAACCT--TAG--CCTA-TTCA---ATTA---G----TA-ATT--TTAGCAGA-AATTC-----TCTTTCATTTCGAAA-A-AA-TACATGTATACTTAGGAAGATG-TATTATT-AA--AAATGGG-A-TTTTATTTTTAAATTC---A---------TTA--CTG-TTATA--TCATA---ATCAAGTTAGTA-CG--TGCAT-GGG--GGAGGGG---GGGattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAAATGAAATTAGTATAGTATTTAATTGAGGAGTGATTGGTCCATTAGAATCATTAGGTGAGAATTGTGATATGTAAAATGAAAGGGGGGGGGGGGGGGTTTCGAAA
Unaligned ( gi|17 ): GGGTCTGATGTCGGCCTGCGTTTGAAAAGGGTTCACACCATATTAACAAAGGAAATTAATGATTATATGCGGAAAGTAATTAATGAGTAACAA
Unaligned ( gi|19 ): CAAATTGAGACTCTTCCGAAAATCTACATGAGAGAAAAGTTTGTGTGGACAAAATTCAGTTATG
Unaligned ( gi|24 ): CGCATAGATAAAACATGCTTGCATACGTATACT
Alignments
lowQualScore : 1 33333 11 1 111 1 22222 22222 1111 55555555 11 666666666666666666666666666666666666666666 22222 222222222 111 1 222222 6666666666666666 1 1 11 111111 1111 111 4444444444444444 1 33333333 111 5555555555555 111111 11 1 1 1 777777777777777777 11 3333333 1 1 11 11 22222 444444444444 111111 111 22222222222 22222222 111 222222222222222 1111111111 1 22222 2222222 111 1111 222222222222 44444444444444 11 111111 111 11
lowQualScore : 3 33333 88 3 777 0 55555 3 77777 0 8888 4 8 22 44444444 0 11 8 8 0 777777777777777777777777777777777777777777 22222 999 8 6 8 1 6 1 555555555 0 777 0 111111 8 6666666666666666 0 0 33 555555 4444 444 1 1 99 6666666666666666 2 3 7 2 3 99 0 55555555 33 1 444 0 7777777777777 3 999999 1 00 0 0 2 3 1 333333333333333333 88 7 5555555 2 3 7 0 7 0 1 1 88 1 88 66666 1 3 1 6 444444444444 55 1 000000 3 3 0 1 5 5 000 33333333333 77777777 66 999 888 1 000 888 5 777777777777777 1 1 4 9999 66 1 55 4 0 0 66 4 777 8 4 777 5555555555 0 66 66 6 55555 1 2 6 6 6 0000000 1 000 0 1 5 77 5 77 77 666 2222 5 999999999999 77 5 00000000000000 4 3 11 3 777777 8 444 2 11 3 0 888 5
lowQualScore : . ..... .. . ... . ..... . ..... . .... . . .. ........ . .. . . . .......................................... ..... ... . . . . . . ......... . ... . ...... . ................ . . .. ...... .... ... . . .. ................ . . . . . .. . ........ .. . ... . ............. . ...... . .. . . . . . .................. .. . ....... . . . . . . . . .. . .. ..... . . . . ............ .. . ...... . . . . . . ... ........... ........ .. ... ... . ... ... . ............... . . . .... .. . .. . . . .. . ... . . ... .......... . .. .. . ..... . . . . . ....... . ... . . . .. . .. .. ... .... . ............ .. . .............. . . .. . ...... . ... . .. . . ... .
lowQualScore : 3 33333 33 3 555 0 00000 2 00000 2 5555 2 0 22 00000000 8 22 0 0 8 888888888888888888888888888888888888888888 88888 444 0 4 0 0 0 0 000000000 8 555 0 888888 8 2222222222222222 0 0 88 000000 8888 000 4 4 44 0000000000000000 5 7 3 2 2 88 0 00000000 55 0 888 8 0000000000000 5 000000 2 88 0 0 8 2 0 111111111111111111 33 3 7777777 0 3 3 7 3 7 0 0 55 0 00 55555 2 8 0 0 999999999999 55 5 555555 3 3 5 9 0 7 000 11111111111 33333333 99 111 888 4 222 888 7 555555555555555 6 6 4 4444 11 0 44 4 1 8 11 4 222 9 4 888 5555555555 0 99 99 7 88888 0 5 7 7 7 2222222 0 000 1 7 7 99 7 99 99 777 1111 7 333333333333 99 7 66666666666666 3 0 00 2 222222 8 000 2 99 2 1 888 0
consensus : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-TGTTTTATAATAACTT-CATTT-TTGT-ATTGACAAG-----TTA-AAGAAA--TAA-ATTT--CG-----AT--A--CAAAATT-AATCTTTCAGTAG-ACGAAA-ATAATTTTTGTCATNA-CA------AAATTCATTTTTGTA---GAC-AAACTC--GATTTTGTCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-CTTAG-TT-GCATT--A-ATAACAAAAGTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCTAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTATTANCAAATGGAAAT---A-TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGG--GGG-A-GGG---GTGCG--TTTG---CACCCC-CCCCCCCTG-----G-AAAAAGCAAAATGTA-CT----ATT--AAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TAC--GG-A-TTTTATTT----ATC-CA------------TGA--CCG-TTGTA--T-AT----A-TCAAGTCAGGACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
Reference ( family-1321 ) : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-TGTTTTATAATAACTT-CATTT-TTGT-ATTGACAAG-----TTA-AAGAAA--TAA-ATTT--CG-----AT--A--CAAAATT-AATCTTTCAGTAG-ACGAAA-ATAATTTTTGTCATNA-CA------AAATTCATTTTTGTA---GAC-AAACTC--GATTTTGTCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-CTTAG-TT-GCATT--A-ATAACAAAAGTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCTAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTATTANCAAATGGAAAT---A-TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGG--GGG-A-GGG---GTGCG--TTTG---CACCCC-CCCCCCCTG-----G-AAAAAGCAAAATGTA-CT----ATT--AAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TAC--GG-A-TTTTATTT----ATC-CA------------TGA--CCG-TTGTA--T-AT----A-TCAAGTCAGGACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
gi|1 : GGGCG-CCTGAGTGAATTGAA--TTTC-ATCCTTTT---GTATTCAAAATC-AA-----TTTTATGTACACAAAATTGAATTCTGTT-TTTACAAAAT--T-ATTTTTGTTTCACAAAGATAT-GTTATACATGCA--TGTTTCATAATAACTT-TAATT-ATGT-ACGGACAAAAATAATTA-AAAAAA---AA-ATGT--TG-----A---A--CAAAATT-A-TCTTCCAGTAG-ATAAAA-ATTATTTTTGTTTTCA-TA------AAATTCATTTTTGTCTTCGCA-AAATTC--AATTTTGTCATGAT--AAATTTC-CTTTTATCAAT-TATATTAGG--CAAATATT--AA--CCT--A-TCTGTATAC---AAAATTTACTTTTGCAA-ATTAG----------------ACAAAATTGAATTTGTATGGAA--AATGTTGA-TAT-------CGAGACGCCACATGAG--CCTAGTGATT-----CGC----ACTCAAA--ATCCATTTTCGTGT-GGACAAAGACTAAGTT--------------A---AAAATT--AATTCAATTTTATGTCATTAGTCAATTTTGTCTGACAGAAGTAAATT-TTGTATTGAAATTAGTTTACAGAC-TCCTAACGAAAACACTCATCACAATTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATTAGCAGACATCATATC--GACTTCCTGTGAGAGGCGCATGCTC-----TGGAATCTCATTTATTATCAAAAGGAAATC--A-TA---CCAGGCAGGGC--CTGTCGACCGCA------GCAATGA-C-AAACCGAATGTTTCGTCATTCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----A------CCC-------TGG--GGG-A-GGG---GTGCA--TTTGCAACACCCC-CATCCCCTG-----GAAAAAAGCAAAATGTA-CTACTAATT--AAAGTAAGATTTTG-CG-CTCAAAAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-ACAA-T-C-----TGCT---GAAAATG-CA--ATT-AA--TAC--AG-G-CTTCATTT----ACC-CATGAGTGAGTGACTGA--CCG-TTGTA--TCATA---A-TCAAGTCAGGACCG--TATAC-GGA--GGAAAGG---GGGGGGGGGGTGATTTGC--CTAAAATATCGCAC---CTTC-CTCCTCAAAAGTCTGGGTATGGGCCTGA
gi|10 : caA-TT----ATT--AA-GTG-GATTTTA-TT-CTGA-TAT--T-G--ACTAGTT-ATTTATTACCGG----TAGATA--T--AGAGATAATAAAA---TATTT-AATCTGATG-A-AAAT-T-----TGCT---GA-GACGACA--ATT-AAATTAC--AG-G-ATTTATTT----CTCACA------------TGT--CCA-TT-TA--T--C----G-TCAA-CCAGGA
gi|10 : CC-------AGGATGTG-T-GGG---GTGC---TTTG----ACCTC-CCTC---TATAAAAA-AAAAAGCAAA-TGAA-------GTTGAAAAGTCAA--TTCA--T-CAGTATGT--T-A--ACTA-TT-A---ATTA---tgtgtggggtgctttgacctccctctataaaaaaaaaagcaaatgaagttgaaaagtcaattcatcagtatgttaactattaattatttctaaattatgcacctcctccaaaaaagtttgatcgggca
gi|11 : attattaagtggattttattctgatattgactagttatttattaccggtagatatagagataataaaatatttaatctgatgaaaatttgctgagacgacaattaaattacaggatttatttctcacatgtccatttatcgtcaaAAAATGGAATTTTTAC---ACGAAAGTTGAATAT--------GAGACGCCAAATGAG--ACTATTGAT------------------AAGGATC-ATTTTTACGT-G-ACGAAAACTGAATTTTTTGTTGTTAGATA---AAAATG--AA---AACTGAACA-CAT-AGTGAGTTTTGTCTAACAGAAGCAAATT-TTATATTTAATTTAGTTTATGGATATGCACTTGAAAATTtttctaaattatgcacctcctccaaaaaagtttgatcgggca
gi|12 : TAGTAAA-GGAAATTCTA-TAAAACGAGGAAGGGC--CTATCAACTGCA------GCAATGA-C-AAAACGAATGTTTTGTCAATCGGGTTGTCGAA-TGTAATGTTAATCTTCACCAG----GCCCGTACCC-------AGG--GGGTG-GGG---GTGCG--ATCG---CAtgtaagaatgccta
gi|13 : gggactcaTAT-GTTGTAC--ACACCTGTTTTATAATAACTT-CATCT-CTGT-ATTGAC---------TA-AACAAAACTAA-ATTT--TGCAAGCATCCA--CAAAATT-AG-GTTTCAGTGG-ATAAAA-ATCGCTTATGTC--GA-CA------AAATTCATGTTTGT
gi|15 : caatg---CTAAGCGGGGC--CTGTCGACTGCAGCACGCGCAATGA-C-AAACCGA-------GTAAATGGGGATGTGGAA-TATAACc
gi|16 : tccaacctcttgatgtacgtgtaagctagcATTTTTCCACAAGTATAGAT---AATG---CTAGGCAGGAT--CTGTCCACTACC------GCAATGA-C-AACCTGAGTTTTTTGTTAATAAGGAT
gi|18 : gacgttgtttatatGGGC--ATATCGAC-GCA------GCAATGA-C-AGACCAAGTGTTTTATAAATCAGGGTATCGAA-TGTAACATC-ATTT---CGAG----G------a
gi|2 : GGGTG-CC-----AAATGGGA--CTTCGATCTTTTT---GTAATCAAAATC-AATTCAATTTTGTGTATACAAAATTGAATTCCGT-------GATAC--T-ATATTTGTCGTACAAAAACAC-GATATAG--GTACTTGTT---TGATAACTT-CATTA-TTGT-AGTGACAA-------------AAA--TGATGTTT---------AT--A--CAAAATC--ATCTTTCAGTGG-AC-AAT-ATAATTTTGGTCATTA-C-------AAATTCA-TTTTGTA---GAC-AAA--------------A-GAC--AA------A-TTTGTCAAT-TAGAT-ATG--CAAATATT--AAA-CTT--A-TTTGCGCAC---AAAATTGATTTTTGTCATCTTAT-TT-GCATT--AGATAACAAAAGT-CATTTTTGTGAAACAAAT-TTGA-ATT-------CG-TACACAANNNNNN--NNNNNNNNNN-----NNNCGAAACTCTAA----CGACTTTT--GT-G-GTTCAG-TTTTGTT--------------AGACAAAGTGAAAATTCAATTTTGT-------GTCAATTTTGTAT-------GCAAATTAGTGTACAGAATCCAA-ATATGGATATGCAAATGAAAACTATCACCATGTTTTTGTAAG
gi|2 : gATTGATCAGCAGAC--TATTTCCTAACTTCCTGTGAGAAGCGCATGCTCCAGTATGGAATCTCATTTGTTAACAAATGGGG--------------AGGCAGGTT--GTGCCGATTATT------GAAAAGA-T-AATCTGAAgaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtgattgatcagcagactatttcctaacttcctgtgagaagcgcatgctccagtatggaatctcatttgttaacaaatggggaggcaggttgtgccgattattgaaaagataatctgaa
gi|20 : ggggtgccaaatgggacttcgatctttttgtaatcaaaatcaattcaattttgtgtatacaaaattgaattccgtgatactatatttgtcgtacaaaaacacgatataggtacttgtttgataacttcattattgtagtgacaaaaatgatgtttatacaaaatcatctttcagtggacaatataattttggtcattacaaattcattttgtagacaaaagacaaatttgtcaattagatatgcaaatattaaacttatttgcgcacaaaattgatttttgtcatcttatttgcattagataacaaaagtcatttttgtgaaacaaatttgaattcgtacacaannnnnnnnnnnnnnnnnnncgaaactctaacgacttttgtggttcagttttgttagacaaagtgaaaattcaattttgtgtcaattttgtatgcaaattagtgtacagaatccaaatatggatatgcaaatgaaaactatcaccatgtttttgtaaggaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtg---CCAGGC-GGGTTACTGTCGATCGCA------GCAATGA-CAAAACCAAATGATTTGT
gi|21 : aaaatctcttCAATTTGC--CTAAAATCTCGCAC---CCCCTCTCCACAAAATTCTGGGTACAGGC
gi|22 : at---AAAATAGACTTTTGTTA-TCTAGATT-GCATTTAA-ATAACAAAAGTAAA-TTTTGCGtg
gi|23 : -TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGG-C-AAACCGAGTATTT
gi|3 : tTTTAT-ATTAAATAGAAA-----------CTAGGCAGGGC--CTATCCACAGCA------GCAATGA-C-AAACCGAATGTTTTGTTAATCGGGATATCGAAATGTAACATT-ATTT---CCAG----G------TCCGTAAACAAGG--GGG-A-AG-----------------------T-CCCCCCCTG-----G-AAAATGCAAAATATA-CT----ATT--AAAGTAAGATTTTA-CT-CTAAATAT--C-G--GATA-TT-A---ATTA---G----TA-ATT--T--ACAGA-A-----------TTTG---TTAACT-A-AA-T-A-----T-TT---GAGGA-G-CA--ATT--A--TAC--GG-A-TTTTA-TT----ATC-CA------------TGA--CCG-TTG-------T----A-TCAAGTCAGTAC
gi|3 : gAAATGCA-CT----AT---AAAGTCAGAATTCA-CT-CTGTGCAT--T-G--CCTA-TT-A---AT----------CA-ATT--T--GCtatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatcaatttgcctaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|3 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcCAATTTGC--CTAAAATAT-GCAC---CTCC-CTCCTCActaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatG-----G-AAGAAGCAAAATGTAACT----ATT--GAAGTAAGATTTTAACTACTGAATAT--T-GTCCCTAATT-A---ATTA---GGCCCCATATTAAT--ACAAA-AATTCATCTATTTTGGAATTTGAAG-A-AA-T-C-----TGCA---GAAGACG-CA--ATCAAA--TAC--GGCATTTTTATGT----ATC-CA------------TGACCCCGTTTGTA--T-AC----T-TTAA------ACCGCATACACTGGGGTGGGTGGGGGTGGGGGGGGGGCTACTCGCAAC-AAAACAGCACAC---ATCC-CTggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : aggatagcattcctgaaacatggccaccaggcccttactgttaaTTGC--CTAAATTATCGCAC----TCC-CTCTTCAAAAGTCTGGGTACGGGTCTGAacaaagaaggcaagatttactcctgtacatttgactatattatcaattgcctaaattatcgcactccctcttcaaaagtctgggtacgggtctgatgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : aggatagcattcctgaaacatggccaccaggcccttactgttaaggaagaagcaaaatgtaactattgaagtaagattttaactactgaatattgtccctaattaattaggccccatattaatacaaaaattcatctattttggaatttgaagaaatctgcagaagacgcaatcaaatacggcatttttatgtatccatgaccccgtttgtatactttaaaccgcatacactggggtgggtgggggtggggggggggctactcgcaacaaaacagcacacatccctacaaagaaggcaagatttactcctgtacatttgactatattatcaaTAGGCAGGGC--CTGTTGACTGCA------GCAATAG-C-AAACCGAATGTTTTGTCAATCGGTATGTCAAA-TGTAACATC-ATTT---CCAG----G------CCC-------------GT-ACGGG---GTGCA--TTTG---CACCCC-C------TG-----C-ATAAAGCAAAATGTA-TT----ATT--GAAGTCAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATGA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTAAAGAA-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--AAT--GG-A-TTTTATTT----ATC-CA------------TGA--CTG-TTG-------T----A-CCAAGTCAGAACCG--TA-AC--------ACAGG---GGGGGGAGGGTG-TGTGCG-C----AT-TTGCAC---CCCC-CT--GCAAAAtgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : GG--GGG-A-GGGTGTGTGCGCATTTG---CACCCC-CCT------------------GCAAAATGCA-CT----GTC--ACAGTCAGATTTCT-CT-CT---TACCGT-G--ACTA-TT-A---AT----------CA-ATT--T--GCtgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|5 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacacagggC--CTAAAATATCACAC---CTCC-TTCTT--AAAGT-TGGGTACGctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|6 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacacaggggggggagggtgtgtgcgcatttgcacccccctgcaaaatgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcaTTTTC---GTAAACAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTCATAAATAAAAT--TCATTTTTATCACACAAAAATAT-GT------------TGTTTTATGATAACTT--ATTT-TTGT-ATTGCTAAG-----TTA-TAGAAAGTTAT-ATTT--CA-----GTGGA--CAAAACTGAATTAT---GTAG-ACGAAATAAAATTTTTGTCATGA-CAAATTTTAAATCCATTTTTGTA---GACAAAACTC--GATTTT-TCA--------------ATTTTGTTTGT-TATGT-ATG--CAAATATTGAAAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-TCTAG-TT--------------------TGCATTCT---GAAACAAATA-TGA-TATTCGTACACAAAACGCAAACTGAAATTCTCGCGATTTAAAATGT----ACTCTAC--ATACAATTTTGTGTGG-AC-AAAATTCAGTT--------------tcgggtgttgatttct
gi|7 : aGCGACC-----GATTGGGGAGTTGT-ATCTTTTTTTGGTAATCAAAACCCAA-----TTTTGTGTACACAAA-TTGAATTCTGTC-ATAACAAAATGTC-ATTTTTGTTACACAAAAGTATTGTTGCA-----------TTTATAATAACTTTCATTTGTTGTTATTGATAAG-----TTATACGAAA--TTA-GTTTTTCA-----AT--GACCAGAATTCAATTTTT--GTATTACGAAA-TCAATTTTTGTCACAAACA------AAATCCATTTTTGTA---GAC-AAACTTCAAATTTTGTCA-TGCAAAA--TTCAATTTTGTCAATATATGT-ATGGCCAAATATT--CAATCTTTCATTTTGCATACCCAAAAATATACTTTTGTTA-CTTAG-TTGGCATA--A-ATAACAAAAGTAAA-TTTTGTGAGATAAATtt
gi|8 : gggtA-T-AAATCGAATGGTTTGTCAATCGGCATGTCGAA-TGTAACATA-ATTC---CCAG----G------CCC------------------------GT-CG--TTTG---CACCCCACCCCCACTG-----t
gi|8 : CC---GGATACG-CA--ATT-AA--TAC--GG-A-TTTTATTT----ATT-CA------------AGA--CTG-TTGTACTT-ATCATAA-TCATGTCAGGACCG--TACAC-CGG--GAAGAGG---GGGGGGGGGGcccccggatacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|8 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccCAATTTGC--CTAAAATATCGCACAGTCTCC-CTTCTCCATTGTCTGGGTACGGGCCTGAgcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|9 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccccggatacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatGCA------GCAATGAGC-GAAC--AAT--TTTG--AA-------GT-------TAACACC-ATTT---CCAGCTGTA------CCC-------AGG--GGG-A-GGG----TATG--TTTG---CCCCCC-CCCCCCCTA-------------CAAAATGTA-CT----GTT--AAAGCAAGATTTT--CT-CTGAACCT--TAG--CCTA-TTCA---ATTA---G----TA-ATT--TTAGCAGA-AATTC-----TCTTTCATTTCGAAA-A-AA-TACATGTATACTTAGGAAGATG-TATTATT-AA--AAATGGG-A-TTTTATTTTTAAATT-CA------------TTA--CTG-TTATA--TCAT----AATCAAGTTAGTAC-G--TGCAT-GGG--GGA---------GGGGGGGattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAAATGAAATTAGTATAGTATTTAATTGAGGAGTGATTGGTCCATTAGAATCATTAGGTGAGAATTGTGATATGTAAAATGAAAGGGGGGGGGGGGGGGTTTCGAAA
Unaligned ( gi|17 ): GGGTCTGATGTCGGCCTGCGTTTGAAAAGGGTTCACACCATATTAACAAAGGAAATTAATGATTATATGCGGAAAGTAATTAATGAGTAACAA
Unaligned ( gi|19 ): CAAATTGAGACTCTTCCGAAAATCTACATGAGAGAAAAGTTTGTGTGGACAAAATTCAGTTATG
Unaligned ( gi|24 ): CGCATAGATAAAACATGCTTGCATACGTATACT
Alignments
lowQualScore : 1 33333 11 1 111 1 22222 22222 1111 55555555 11 666666666666666666666666666666666666666666 22222 222222222 111 1 222222 6666666666666666 1 1 11 111111 1111 111 4444444444444444 1 33333333 111 5555555555555 111111 11 1 1 1 777777777777777777 11 3333333 1 1 11 11 22222 444444444444 111111 111 22222222222 22222222 111 222222222222222 1111111111 1 22222 2222222 111 1111 222222222222 44444444444444 11 111111 111 11
lowQualScore : 3 33333 88 3 777 0 55555 3 77777 0 8888 4 8 22 44444444 0 11 8 8 0 777777777777777777777777777777777777777777 22222 999 8 6 8 1 6 1 555555555 0 777 0 111111 8 6666666666666666 0 0 33 555555 4444 444 1 1 99 6666666666666666 2 3 7 2 3 99 0 55555555 33 1 444 0 7777777777777 3 999999 1 00 0 0 2 3 1 333333333333333333 88 7 5555555 2 3 7 0 7 0 1 1 88 1 88 66666 1 3 1 6 444444444444 55 1 000000 3 3 0 1 5 5 000 33333333333 77777777 66 999 888 1 000 888 5 777777777777777 1 1 4 9999 66 1 55 4 0 0 66 4 777 8 4 777 5555555555 0 66 66 6 55555 1 2 6 6 6 0000000 1 000 0 1 5 77 5 77 77 666 2222 5 999999999999 77 5 00000000000000 4 3 11 3 777777 8 444 2 11 3 0 888 5
lowQualScore : . ..... .. . ... . ..... . ..... . .... . . .. ........ . .. . . . .......................................... ..... ... . . . . . . ......... . ... . ...... . ................ . . .. ...... .... ... . . .. ................ . . . . . .. . ........ .. . ... . ............. . ...... . .. . . . . . .................. .. . ....... . . . . . . . . .. . .. ..... . . . . ............ .. . ...... . . . . . . ... ........... ........ .. ... ... . ... ... . ............... . . . .... .. . .. . . . .. . ... . . ... .......... . .. .. . ..... . . . . . ....... . ... . . . .. . .. .. ... .... . ............ .. . .............. . . .. . ...... . ... . .. . . ... .
lowQualScore : 3 33333 33 3 555 0 00000 2 00000 2 5555 2 0 22 00000000 8 22 0 0 8 888888888888888888888888888888888888888888 88888 444 0 4 0 0 0 0 000000000 8 555 0 888888 8 2222222222222222 0 0 88 000000 8888 000 4 4 44 0000000000000000 5 7 3 2 2 88 0 00000000 55 0 888 8 0000000000000 5 000000 2 88 0 0 8 2 0 111111111111111111 33 3 7777777 0 3 3 7 3 7 0 0 55 0 00 55555 2 8 0 0 999999999999 55 5 555555 3 3 5 9 0 7 000 11111111111 33333333 99 111 888 4 222 888 7 555555555555555 6 6 4 4444 11 0 44 4 1 8 11 4 222 9 4 888 5555555555 0 99 99 7 88888 0 5 7 7 7 2222222 0 000 1 7 7 99 7 99 99 777 1111 7 333333333333 99 7 66666666666666 3 0 00 2 222222 8 000 2 99 2 1 888 0
consensus : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-TGTTTTATAATAACTT-CATTT-TTGT-ATTGACAAG-----TTA-AAGAAA--TAA-ATTT--CG-----AT--A--CAAAATT-AATCTTTCAGTAG-ACGAAA-ATAATTTTTGTCATNA-CA------AAATTCATTTTTGTA---GAC-AAACTC--GATTTTGTCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-CTTAG-TT-GCATT--A-ATAACAAAAGTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCTAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTATTANCAAATGGAAAT---A-TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGG--GGG-A-GGG---GTGCG--TTTG---CACCCC-CCCCCCCTG-----G-AAAAAGCAAAATGTA-CT----ATT--AAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TAC--GG-A-TTTTATTT----ATC-CA------------TGA--CCG-TTGTA--T-AT----A-TCAAGTCAGGACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
Reference ( family-1321 ) : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-TGTTTTATAATAACTT-CATTT-TTGT-ATTGACAAG-----TTA-AAGAAA--TAA-ATTT--CG-----AT--A--CAAAATT-AATCTTTCAGTAG-ACGAAA-ATAATTTTTGTCATNA-CA------AAATTCATTTTTGTA---GAC-AAACTC--GATTTTGTCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-CTTAG-TT-GCATT--A-ATAACAAAAGTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCTAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTATTANCAAATGGAAAT---A-TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGG--GGG-A-GGG---GTGCG--TTTG---CACCCC-CCCCCCCTG-----G-AAAAAGCAAAATGTA-CT----ATT--AAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TAC--GG-A-TTTTATTT----ATC-CA------------TGA--CCG-TTGTA--T-AT----A-TCAAGTCAGGACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
gi|1 : GGGCG-CCTGAGTGAATTGAA--TTTC-ATCCTTTT---GTATTCAAAATC-AA-----TTTTATGTACACAAAATTGAATTCTGTT-TTTACAAAAT--T-ATTTTTGTTTCACAAAGATAT-GTTATACATGCA--TGTTTCATAATAACTT-TAATT-ATGT-ACGGACAAAAATAATTA-AAAAAA---AA-ATGT--TG-----A---A--CAAAATT-A-TCTTCCAGTAG-ATAAAA-ATTATTTTTGTTTTCA-TA------AAATTCATTTTTGTCTTCGCA-AAATTC--AATTTTGTCATGAT--AAATTTC-CTTTTATCAAT-TATATTAGG--CAAATATT--AA--CCT--A-TCTGTATAC---AAAATTTACTTTTGCAA-ATTAG----------------ACAAAATTGAATTTGTATGGAA--AATGTTGA-TAT-------CGAGACGCCACATGAG--CCTAGTGATT-----CGC----ACTCAAA--ATCCATTTTCGTGT-GGACAAAGACTAAGTT--------------A---AAAATT--AATTCAATTTTATGTCATTAGTCAATTTTGTCTGACAGAAGTAAATT-TTGTATTGAAATTAGTTTACAGAC-TCCTAACGAAAACACTCATCACAATTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATTAGCAGACATCATATC--GACTTCCTGTGAGAGGCGCATGCTC-----TGGAATCTCATTTATTATCAAAAGGAAATC--A-TA---CCAGGCAGGGC--CTGTCGACCGCA------GCAATGA-C-AAACCGAATGTTTCGTCATTCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----A------CCC-------TGG--GGG-A-GGG---GTGCA--TTTGCAACACCCC-CATCCCCTG-----GAAAAAAGCAAAATGTA-CTACTAATT--AAAGTAAGATTTTG-CG-CTCAAAAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-ACAA-T-C-----TGCT---GAAAATG-CA--ATT-AA--TAC--AG-G-CTTCATTT----ACC-CATGAGTGAGTGACTGA--CCG-TTGTA--TCATA---A-TCAAGTCAGGACCG--TATAC-GGA--GGAAAGG---GGGGGGGGGGTGATTTGC--CTAAAATATCGCAC---CTTC-CTCCTCAAAAGTCTGGGTATGGGCCTGA
gi|10 : caA-TT----ATT--AA-GTG-GATTTTA-TT-CTGA-TAT--T-G--ACTAGTT-ATTTATTACCGG----TAGATA--T--AGAGATAATAAAA---TATTT-AATCTGATG-A-AAAT-T-----TGCT---GA-GACGACA--ATT-AAATTAC--AG-G-ATTTATTT----CTCACA------------TGT--CCA-TT-TA--T--C----G-TCAA-CCAGGA
gi|10 : CC-------AGGATGTG-T-GGG---GTGC---TTTG----ACCTC-CCTC---TATAAAAA-AAAAAGCAAA-TGAA-------GTTGAAAAGTCAA--TTCA--T-CAGTATGT--T-A--ACTA-TT-A---ATTA---tgtgtggggtgctttgacctccctctataaaaaaaaaagcaaatgaagttgaaaagtcaattcatcagtatgttaactattaattatttctaaattatgcacctcctccaaaaaagtttgatcgggca
gi|11 : attattaagtggattttattctgatattgactagttatttattaccggtagatatagagataataaaatatttaatctgatgaaaatttgctgagacgacaattaaattacaggatttatttctcacatgtccatttatcgtcaaAAAATGGAATTTTTAC---ACGAAAGTTGAATAT--------GAGACGCCAAATGAG--ACTATTGAT------------------AAGGATC-ATTTTTACGT-G-ACGAAAACTGAATTTTTTGTTGTTAGATA---AAAATG--AA---AACTGAACA-CAT-AGTGAGTTTTGTCTAACAGAAGCAAATT-TTATATTTAATTTAGTTTATGGATATGCACTTGAAAATTtttctaaattatgcacctcctccaaaaaagtttgatcgggca
gi|12 : TAGTAAA-GGAAATTCTA-TAAAACGAGGAAGGGC--CTATCAACTGCA------GCAATGA-C-AAAACGAATGTTTTGTCAATCGGGTTGTCGAA-TGTAATGTTAATCTTCACCAG----GCCCGTACCC-------AGG--GGGTG-GGG---GTGCG--ATCG---CAtgtaagaatgccta
gi|13 : gggactcaTAT-GTTGTAC--ACACCTGTTTTATAATAACTT-CATCT-CTGT-ATTGAC---------TA-AACAAAACTAA-ATTT--TGCAAGCATCCA--CAAAATT-AG-GTTTCAGTGG-ATAAAA-ATCGCTTATGTC--GA-CA------AAATTCATGTTTGT
gi|15 : caatg---CTAAGCGGGGC--CTGTCGACTGCAGCACGCGCAATGA-C-AAACCGA-------GTAAATGGGGATGTGGAA-TATAACc
gi|16 : tccaacctcttgatgtacgtgtaagctagcATTTTTCCACAAGTATAGAT---AATG---CTAGGCAGGAT--CTGTCCACTACC------GCAATGA-C-AACCTGAGTTTTTTGTTAATAAGGAT
gi|18 : gacgttgtttatatGGGC--ATATCGAC-GCA------GCAATGA-C-AGACCAAGTGTTTTATAAATCAGGGTATCGAA-TGTAACATC-ATTT---CGAG----G------a
gi|2 : GGGTG-CC-----AAATGGGA--CTTCGATCTTTTT---GTAATCAAAATC-AATTCAATTTTGTGTATACAAAATTGAATTCCGT-------GATAC--T-ATATTTGTCGTACAAAAACAC-GATATAG--GTACTTGTT---TGATAACTT-CATTA-TTGT-AGTGACAA-------------AAA--TGATGTTT---------AT--A--CAAAATC--ATCTTTCAGTGG-AC-AAT-ATAATTTTGGTCATTA-C-------AAATTCA-TTTTGTA---GAC-AAA--------------A-GAC--AA------A-TTTGTCAAT-TAGAT-ATG--CAAATATT--AAA-CTT--A-TTTGCGCAC---AAAATTGATTTTTGTCATCTTAT-TT-GCATT--AGATAACAAAAGT-CATTTTTGTGAAACAAAT-TTGA-ATT-------CG-TACACAANNNNNN--NNNNNNNNNN-----NNNCGAAACTCTAA----CGACTTTT--GT-G-GTTCAG-TTTTGTT--------------AGACAAAGTGAAAATTCAATTTTGT-------GTCAATTTTGTAT-------GCAAATTAGTGTACAGAATCCAA-ATATGGATATGCAAATGAAAACTATCACCATGTTTTTGTAAG
gi|2 : gATTGATCAGCAGAC--TATTTCCTAACTTCCTGTGAGAAGCGCATGCTCCAGTATGGAATCTCATTTGTTAACAAATGGGG--------------AGGCAGGTT--GTGCCGATTATT------GAAAAGA-T-AATCTGAAgaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtgattgatcagcagactatttcctaacttcctgtgagaagcgcatgctccagtatggaatctcatttgttaacaaatggggaggcaggttgtgccgattattgaaaagataatctgaa
gi|20 : ggggtgccaaatgggacttcgatctttttgtaatcaaaatcaattcaattttgtgtatacaaaattgaattccgtgatactatatttgtcgtacaaaaacacgatataggtacttgtttgataacttcattattgtagtgacaaaaatgatgtttatacaaaatcatctttcagtggacaatataattttggtcattacaaattcattttgtagacaaaagacaaatttgtcaattagatatgcaaatattaaacttatttgcgcacaaaattgatttttgtcatcttatttgcattagataacaaaagtcatttttgtgaaacaaatttgaattcgtacacaannnnnnnnnnnnnnnnnnncgaaactctaacgacttttgtggttcagttttgttagacaaagtgaaaattcaattttgtgtcaattttgtatgcaaattagtgtacagaatccaaatatggatatgcaaatgaaaactatcaccatgtttttgtaaggaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtg---CCAGGC-GGGTTACTGTCGATCGCA------GCAATGA-CAAAACCAAATGATTTGT
gi|21 : aaaatctcttCAATTTGC--CTAAAATCTCGCAC---CCCCTCTCCACAAAATTCTGGGTACAGGC
gi|22 : at---AAAATAGACTTTTGTTA-TCTAGATT-GCATTTAA-ATAACAAAAGTAAA-TTTTGCGtg
gi|23 : -TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGG-C-AAACCGAGTATTT
gi|3 : tTTTAT-ATTAAATAGAAA-----------CTAGGCAGGGC--CTATCCACAGCA------GCAATGA-C-AAACCGAATGTTTTGTTAATCGGGATATCGAAATGTAACATT-ATTT---CCAG----G------TCCGTAAACAAGG--GGG-A-AG-----------------------T-CCCCCCCTG-----G-AAAATGCAAAATATA-CT----ATT--AAAGTAAGATTTTA-CT-CTAAATAT--C-G--GATA-TT-A---ATTA---G----TA-ATT--T--ACAGA-A-----------TTTG---TTAACT-A-AA-T-A-----T-TT---GAGGA-G-CA--ATT--A--TAC--GG-A-TTTTA-TT----ATC-CA------------TGA--CCG-TTG-------T----A-TCAAGTCAGTAC
gi|3 : gAAATGCA-CT----AT---AAAGTCAGAATTCA-CT-CTGTGCAT--T-G--CCTA-TT-A---AT----------CA-ATT--T--GCtatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatcaatttgcctaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|3 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcCAATTTGC--CTAAAATAT-GCAC---CTCC-CTCCTCActaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatG-----G-AAGAAGCAAAATGTAACT----ATT--GAAGTAAGATTTTAACTACTGAATAT--T-GTCCCTAATT-A---ATTA---GGCCCCATATTAAT--ACAAA-AATTCATCTATTTTGGAATTTGAAG-A-AA-T-C-----TGCA---GAAGACG-CA--ATCAAA--TAC--GGCATTTTTATGT----ATC-CA------------TGACCCCGTTTGTA--T-AC----T-TTAA------ACCGCATACACTGGGGTGGGTGGGGGTGGGGGGGGGGCTACTCGCAAC-AAAACAGCACAC---ATCC-CTggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : aggatagcattcctgaaacatggccaccaggcccttactgttaaTTGC--CTAAATTATCGCAC----TCC-CTCTTCAAAAGTCTGGGTACGGGTCTGAacaaagaaggcaagatttactcctgtacatttgactatattatcaattgcctaaattatcgcactccctcttcaaaagtctgggtacgggtctgatgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : aggatagcattcctgaaacatggccaccaggcccttactgttaaggaagaagcaaaatgtaactattgaagtaagattttaactactgaatattgtccctaattaattaggccccatattaatacaaaaattcatctattttggaatttgaagaaatctgcagaagacgcaatcaaatacggcatttttatgtatccatgaccccgtttgtatactttaaaccgcatacactggggtgggtgggggtggggggggggctactcgcaacaaaacagcacacatccctacaaagaaggcaagatttactcctgtacatttgactatattatcaaTAGGCAGGGC--CTGTTGACTGCA------GCAATAG-C-AAACCGAATGTTTTGTCAATCGGTATGTCAAA-TGTAACATC-ATTT---CCAG----G------CCC-------------GT-ACGGG---GTGCA--TTTG---CACCCC-C------TG-----C-ATAAAGCAAAATGTA-TT----ATT--GAAGTCAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATGA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTAAAGAA-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--AAT--GG-A-TTTTATTT----ATC-CA------------TGA--CTG-TTG-------T----A-CCAAGTCAGAACCG--TA-AC--------ACAGG---GGGGGGAGGGTG-TGTGCG-C----AT-TTGCAC---CCCC-CT--GCAAAAtgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : GG--GGG-A-GGGTGTGTGCGCATTTG---CACCCC-CCT------------------GCAAAATGCA-CT----GTC--ACAGTCAGATTTCT-CT-CT---TACCGT-G--ACTA-TT-A---AT----------CA-ATT--T--GCtgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|5 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacacagggC--CTAAAATATCACAC---CTCC-TTCTT--AAAGT-TGGGTACGctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|6 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacacaggggggggagggtgtgtgcgcatttgcacccccctgcaaaatgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcaTTTTC---GTAAACAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTCATAAATAAAAT--TCATTTTTATCACACAAAAATAT-GT------------TGTTTTATGATAACTT--ATTT-TTGT-ATTGCTAAG-----TTA-TAGAAAGTTAT-ATTT--CA-----GTGGA--CAAAACTGAATTAT---GTAG-ACGAAATAAAATTTTTGTCATGA-CAAATTTTAAATCCATTTTTGTA---GACAAAACTC--GATTTT-TCA--------------ATTTTGTTTGT-TATGT-ATG--CAAATATTGAAAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-TCTAG-TT--------------------TGCATTCT---GAAACAAATA-TGA-TATTCGTACACAAAACGCAAACTGAAATTCTCGCGATTTAAAATGT----ACTCTAC--ATACAATTTTGTGTGG-AC-AAAATTCAGTT--------------tcgggtgttgatttct
gi|7 : aGCGACC-----GATTGGGGAGTTGT-ATCTTTTTTTGGTAATCAAAACCCAA-----TTTTGTGTACACAAA-TTGAATTCTGTC-ATAACAAAATGTC-ATTTTTGTTACACAAAAGTATTGTTGCA-----------TTTATAATAACTTTCATTTGTTGTTATTGATAAG-----TTATACGAAA--TTA-GTTTTTCA-----AT--GACCAGAATTCAATTTTT--GTATTACGAAA-TCAATTTTTGTCACAAACA------AAATCCATTTTTGTA---GAC-AAACTTCAAATTTTGTCA-TGCAAAA--TTCAATTTTGTCAATATATGT-ATGGCCAAATATT--CAATCTTTCATTTTGCATACCCAAAAATATACTTTTGTTA-CTTAG-TTGGCATA--A-ATAACAAAAGTAAA-TTTTGTGAGATAAATtt
gi|8 : gggtA-T-AAATCGAATGGTTTGTCAATCGGCATGTCGAA-TGTAACATA-ATTC---CCAG----G------CCC------------------------GT-CG--TTTG---CACCCCACCCCCACTG-----t
gi|8 : CC---GGATACG-CA--ATT-AA--TAC--GG-A-TTTTATTT----ATT-CA------------AGA--CTG-TTGTACTT-ATCATAA-TCATGTCAGGACCG--TACAC-CGG--GAAGAGG---GGGGGGGGGGcccccggatacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|8 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccCAATTTGC--CTAAAATATCGCACAGTCTCC-CTTCTCCATTGTCTGGGTACGGGCCTGAgcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|9 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccccggatacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatGCA------GCAATGAGC-GAAC--AAT--TTTG--AA-------GT-------TAACACC-ATTT---CCAGCTGTA------CCC-------AGG--GGG-A-GGG----TATG--TTTG---CCCCCC-CCCCCCCTA-------------CAAAATGTA-CT----GTT--AAAGCAAGATTTT--CT-CTGAACCT--TAG--CCTA-TTCA---ATTA---G----TA-ATT--TTAGCAGA-AATTC-----TCTTTCATTTCGAAA-A-AA-TACATGTATACTTAGGAAGATG-TATTATT-AA--AAATGGG-A-TTTTATTTTTAAATT-CA------------TTA--CTG-TTATA--TCAT----AATCAAGTTAGTAC-G--TGCAT-GGG--GGA---------GGGGGGGattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
blockSeqs : A . AG G TTG C TTCAA A CATAA GTC G T TG CACACC TC G T TAAACAAAACTAAATTTTGCAAGCATCCA GAATT TCA T A T C A G CAAATTTT . A CTTCAA G TGCAAAATTCAAT A . GC GAAAA TCAT CCA T C TC ATTGCATTTAAATA T G T C C GT A TCGTACAC AG C ATT TTAAAATGT T GGATC T AC G . G A G TTTTGTTGTTAGATA AA T CACAT A A T A A T . T CT CAGTA T T G T ATTCTATAAAA TA T GCACGC G A C A A TCA GCCCGTA GTAAACAA AT TG TGT G GCA . A CTCTATAAAAA A A A . GA G AA A CG A TCC G C TTT TAGGCCC G AA TA T ATCTA A G A . A ACATGTA G TAG C A TT A AT TG CAT TTAA A . CC T TACTTATCATAA G G CA C TGGGGT T GGT A AA T AGT T
blockSeqs : . . . . . . . A CATA TC A . TA GGTACT C . . GTTATACGAAATTAGTTTTTCAATGAC CAATT TCA . G . A A T ACA . . CTCG . GACAAA . . . CAAT A . A T T TTGCATTAGATA G A T T C T . C AA A A NNNNCGAA T ATAC C GT . . T A T AGAC . . T . . . A G C A T ATAATG . T . . . A . . . CTGTA A . AC . G G . . CCCCCCTGG A T . . . C A . . . A A . . TACCGG T . . . AA T G . . . T G . C . . . . . G . . . . . TATCATAA G T . C CGG C . A G T . .
blockSeqs : . . . . . T A . TG . C . . GTTATAGAAAGTTATATTTCAGTGGA AGG T . G . A A G CA . . . . AT . . . AAA A . A C T TTGGCATAAATA G G T C C A . . T A N . . CG A . . . . . C A T A T A . T . . . T . . . G A . T . G A . . CCCCCCTA A A . . . A A . . . A . . . TAG . . . . . C G . . . A G . C . . . . . A . . . . . TATACT G A . C GGG G . T . T . .
blockSeqs : . . . . . . AAATGATGTTTATA ATC . . . . A . A C . A T C TT G A . T T . T . . . T . . . A . . . G A . A . G G . . TGC T A . . . C A . . . G . . . GAG . . . . . C C . . . C A . C . . . . . A . . . . . TATCG G G . . . . . G . T . .
blockSeqs : . . . . . C . . . T . . . G . . A . A G . . CT . . . . . A A . . . C . . . TAG . . . . . . . . . . C . . T . . . . . A . . . . . TA . T A . T . .
blockSeqs : . T . . . C . . . G . . A . . . . . . . . . . C A . . . C . . . . . . . . . . . . . . A . . . . . TA . . . . . .
blockSeqs : . A . . . C . . . . . . . . . . C T . . . A . . . . . . . . . . .
blockSeqs : . T . . . . . . . A . . . . C . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : TAAAAAATTAGTTTTCAATNG********************* GATC* CA******* TTGCATAAATA***** A*********** *** CTCTGG********* **** ************ TATCTA********
originalCons : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-TGTTTTATAATAACTT-CATTT-TTGT-ATTGACAAG-----TTA-AAGAAA--TAA-ATTT--CG-----AT--A--CAAAATT-AATCTTTCAGTAG-ACGAAA-ATAATTTTTGTCATNA-CA------AAATTCATTTTTGTA---GAC-AAACTC--GATTTTGTCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-CTTAG-TT-GCATT--A-ATAACAAAAGTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCTAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTATTANCAAATGGAAAT---A-TA---CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGG--GGG-A-GGG---GTGCG--TTTG---CACCCC-CCCCCCCTG-----G-AAAAAGCAAAATGTA-CT----ATT--AAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TAC--GG-A-TTTTATTT----ATC-CA------------TGA--CCG-TTGTA--T-AT----A-TCAAGTCAGGACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
finalCons : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-TGTTTTATAATAACTT-CATTT-TTGT-ATTGACAATAAAAAATTAGTTTTCAATNG---------------------CAAAATTGATC-TTTCAGTAG-ACGAAA-ATAATTTTTGTCATNACA-------AAATTCATTTTTGTA---GAC-AAACTC--GATTTTGTCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-CTTAGTTGCATAAATA-----ACAAAAGTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCTAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTATTANCAAATGGAAA-----------CTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCGAA-TGTAACATC-ATTT---CCAG----G------CCC-------AGG--GGG-A-GGG---GTGCG--TTTG---CACCCC-CCTCTGG---------AAAAAGCAAAATGTA-CT----ATT--AAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TAC--GG-A-TTTTATTT----ATC-CA------------TGA--CCG-TTGTATCTA--------TCAAGTCAGGACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAAATGAAATTAGTATAGTATTTAATTGAGGAGTGATTGGTCCATTAGAATCATTAGGTGAGAATTGTGATATGTAAAATGAAAGGGGGGGGGGGGGGGTTTCGAAA
Unaligned ( gi|17 ): GGGTCTGATGTCGGCCTGCGTTTGAAAAGGGTTCACACCATATTAACAAAGGAAATTAATGATTATATGCGGAAAGTAATTAATGAGTAACAA
Unaligned ( gi|19 ): CAAATTGAGACTCTTCCGAAAATCTACATGAGAGAAAAGTTTGTGTGGACAAAATTCAGTTATG
Unaligned ( gi|24 ): CGCATAGATAAAACATGCTTGCATACGTATACT
Alignments
lowQualScore : 1 33333 11 1 111 1 22222 22222 1111 55555555 11 7777777777777777777777777777777777777777 33 11 222222222 111 1 222222 6666666666666666 1 1 11 111111 1111 111 4444444444444444 1 33333333 111 5555555555555 111111 11 1 1 1 777777777777777777 11 3333333 1 1 11 11 22222 222222 111111 111 22222222222 22222222 111 111 22222222222 1111111111 1 22222 2222222 111 1111 222222222222 222222222 111111 11 111111 111 11
lowQualScore : 3 33333 88 3 777 0 55555 3 77777 0 8888 4 8 22 44444444 0 11 8 8 3333333333333333333333333333333333333333 8 11 22 00 8 6 8 1 6 1 555555555 0 777 0 111111 8 6666666666666666 0 0 33 555555 4444 444 1 1 99 3333333333333333 2 3 7 2 3 99 0 55555555 33 1 444 0 7777777777777 3 999999 1 00 0 0 2 3 1 333333333333333333 88 7 5555555 2 3 7 0 7 0 1 1 88 1 88 66666 7 1 000000 55 1 000000 3 3 0 1 5 5 000 33333333333 77777777 66 999 888 1 000 888 000 44444444444 3 1 4 9999 66 1 55 4 0 0 66 4 777 8 4 777 5555555555 0 66 66 6 55555 1 2 6 6 6 0000000 1 000 0 1 5 77 5 77 77 666 2222 5 999999999999 77 5 999999999 5 888888 3 11 3 777777 1 444 2 11 3 0 888 5
lowQualScore : . ..... .. . ... . ..... . ..... . .... . . .. ........ . .. . . ........................................ . .. .. .. . . . . . . ......... . ... . ...... . ................ . . .. ...... .... ... . . .. ................ . . . . . .. . ........ .. . ... . ............. . ...... . .. . . . . . .................. .. . ....... . . . . . . . . .. . .. ..... . . ...... .. . ...... . . . . . . ... ........... ........ .. ... ... . ... ... ... ........... . . . .... .. . .. . . . .. . ... . . ... .......... . .. .. . ..... . . . . . ....... . ... . . . .. . .. .. ... .... . ............ .. . ......... . ...... . .. . ...... . ... . .. . . ... .
lowQualScore : 3 33333 33 3 555 0 00000 2 00000 2 5555 2 0 22 00000000 8 22 0 0 8888888888888888888888888888888888888888 0 22 44 66 0 4 0 0 0 0 000000000 8 555 0 888888 8 2222222222222222 0 0 88 000000 8888 000 4 4 44 8888888888888888 5 7 3 2 2 88 0 00000000 55 0 888 8 0000000000000 5 000000 2 88 0 0 8 2 0 111111111111111111 33 3 7777777 0 3 3 7 3 7 0 0 55 0 00 55555 3 0 888888 55 5 555555 3 3 5 9 0 7 000 11111111111 33333333 99 111 888 4 222 888 000 99999999999 6 6 4 4444 11 0 44 4 1 8 11 4 222 9 4 888 5555555555 0 99 99 7 88888 0 5 7 7 7 2222222 0 000 1 7 7 99 7 99 99 777 1111 7 333333333333 99 7 000000000 7 666666 0 00 2 222222 0 000 2 99 2 1 888 0
consensus : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-TGTTTTATAATAACTT-CATTT-TTGT-ATTGACA----A-------TANAAAATT-AGTTTT-CAA----TGA-C-AAAATT--ATCTTTCAGTAG-ACGAAA-ATAATTTTTGTCATNA-CA------AAATTCATTTTTGTA---GAC-AAACTC--GATTTTGTCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-CTTAG-TT-GCA-T--AAATAACAAAAGTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCTAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTATTATCAAATGGAA-----ACTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCG-AATGTAACATC-ATTT---CCAG----G------CCC-------AGG--GGG-A-GGG---GTGCG--TTTG---CACCCC---CCCCT-----GG-AAAAAGCAAAATGTA-CT----ATT--AAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TA--CGG-A-TTTTATTT----ATC-CA------------TGA--CCG-TTGTAT-C-T-ATCA-A-----GTCAGGACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
Reference ( family-1321 ) : NNGGGCG-CC-----GAATGGGA--TTTC-ATCTTTTT---GTAATCAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTC-TTAACAAAAT--T-ATTTTTGTCGCACAAAAATAT-GTTGTAC--GCAC-TGTTTTATAATAACTT-CATTT-TTGT-ATTGACA----A-------TAAAAAATT-AGTTTT-CAA----TNG-C-AAAATT-GATCTTTCAGTAG-ACGAAA-ATAATTTTTGTCATNA-CA------AAATTCATTTTTGTA---GAC-AAACTC--GATTTTGTCA-GAC--AA--TTC-ATTTTGTCAAT-TATGT-ATG--CAAATATT--AAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-CTTAG-TT-GCA-T--AAATAACAAAAGTGAATTTTTGCGAAACAAATGTTGA-TAT-------CGAGACGCNAAATGAG--NCTAGCGATT-----CGC----ACTCTAA--ATCCATTTTTGCGT-G-ACGAAGACTNAGTT--------------A---AAAATG--AATTCAATTTTACG-CAT-AGTCAATTTTGTCTGACAGAAGCAAATT-TTGTATTGAATTTAGTTTACGGATATGCAAACGAAAACTNTCACCACGNTTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATCAGCAGACATCATNTCCTGACTTCCTGTGAGAGGCGCATGCTCCAGTATGGAATCTCATTTATTANCAAATGGAA-----ACTAGGCAGGGC--CTGTCGACTGCA------GCAATGA-C-AAACCGAATGTTTTGTCAATCGGGATGTCG-AATGTAACATC-ATTT---CCAG----G------CCC-------AGG--GGG-A-GGG---GTGCG--TTTG---CACCCC---CCTCT-----GG-AAAAAGCAAAATGTA-CT----ATT--AAAGTNAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-A-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--TA--CGG-A-TTTTATTT----ATC-CA------------TGA--CCG-TTGTAT-C-T-ATCA-A-----GTCAGGACCG--TACAC-GGG--GGANAGG---GGGGGGGGGGCGATTTGC--CTAAAATATCGCAC---CTCC-CTCCTCAAAAGTCTGGGTACGGGCCTGA
gi|1 : GGGCG-CCTGAGTGAATTGAA--TTTC-ATCCTTTT---GTATTCAAAATC-AA-----TTTTATGTACACAAAATTGAATTCTGTT-TTTACAAAAT--T-ATTTTTGTTTCACAAAGATAT-GTTATACATGCA--TGTTTCATAATAACTT-TAATT-ATGT-ACGGACA----AAAATAATTAAAAAAAA-AATGTT-GAA--------C-AAAATT--ATCTTCCAGTAG-ATAAAA-ATTATTTTTGTTTTCA-TA------AAATTCATTTTTGTCTTCGCA-AAATTC--AATTTTGTCATGAT--AAATTTC-CTTTTATCAAT-TATATTAGG--CAAATATT--AA--CCT--A-TCTGTATAC---AAAATTTACTTTTGCAA-ATTAG----------------ACAAAATTGAATTTGTATGGAA--AATGTTGA-TAT-------CGAGACGCCACATGAG--CCTAGTGATT-----CGC----ACTCAAA--ATCCATTTTCGTGT-GGACAAAGACTAAGTT--------------A---AAAATT--AATTCAATTTTATGTCATTAGTCAATTTTGTCTGACAGAAGTAAATT-TTGTATTGAAATTAGTTTACAGAC-TCCTAACGAAAACACTCATCACAATTTTGTAAGACGACCTATGTTGAAGTTTGATTTACTAAACATTGATTAGCAGACATCATATC--GACTTCCTGTGAGAGGCGCATGCTC-----TGGAATCTCATTTATTATCAAAAGGAAATCATACCAGGCAGGGC--CTGTCGACCGCA------GCAATGA-C-AAACCGAATGTTTCGTCATTCGGGATGTCG-AATGTAACATC-ATTT---CCAG----A------CCC-------TGG--GGG-A-GGG---GTGCA--TTTGCAACACCCCCATCCCCT-----GGAAAAAAGCAAAATGTA-CTACTAATT--AAAGTAAGATTTTG-CG-CTCAAAAT--T-G--CCTA-TT-A---ATTA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTGAAG-ACAA-T-C-----TGCT---GAAAATG-CA--ATT-AA--TA--CAG-G-CTTCATTT----ACC-CATGAGTGAGTGACTGA--CCG-TTGTAT-CATAATCA-A-----GTCAGGACCG--TATAC-GGA--GGAAAGG---GGGGGGGGGGTGATTTGC--CTAAAATATCGCAC---CTTC-CTCCTCAAAAGTCTGGGTATGGGCCTGA
gi|10 : caA-TT----ATT--AA-GTG-GATTTTA-TT-CTGA-TAT--T-G--ACTAGTT-ATTTATTACCGG----TAGATA--T--AGAGATAATAAAA---TATTT-AATCTGATG-A-AAAT-T-----TGCT---GA-GACGACA--ATT-AAATTA--CAG-G-ATTTATTT----CTCACA------------TGT--CCA-TT-TAT-C---GTCA-A------CCAGGA
gi|10 : CC-------AGGATGTG-T-GGG---GTGC---TTTG----ACCTC---CCTCTATAAAAA-AAAAAGC-AAATGAA-------GTTGAAAAGTCAA--TTCA--T-CAGTATGT--T-A--ACTA-TT-A---ATTA---tgtgtggggtgctttgacctccctctataaaaaaaaaagcaaatgaagttgaaaagtcaattcatcagtatgttaactattaattatttctaaattatgcacctcctccaaaaaagtttgatcgggca
gi|11 : attattaagtggattttattctgatattgactagttatttattaccggtagatatagagataataaaatatttaatctgatgaaaatttgctgagacgacaattaaattacaggatttatttctcacatgtccatttatcgtcaaAAAATGGAATTTTTAC---ACGAAAGTTGAATAT--------GAGACGCCAAATGAG--ACTATTGAT------------------AAGGATC-ATTTTTACGT-G-ACGAAAACTGAATTTTTTGTTGTTAGATA---AAAATG--AA---AACTGAACA-CAT-AGTGAGTTTTGTCTAACAGAAGCAAATT-TTATATTTAATTTAGTTTATGGATATGCACTTGAAAATTtttctaaattatgcacctcctccaaaaaagtttgatcgggca
gi|12 : AA-----ACGAGGAAGGGC--CTATCAACTGCA------GCAATGA-C-AAAACGAATGTTTTGTCAATCGGGTTGTCG-AATGTAATGTTAATCTTCACCAG----GCCCGTACCC-------AGG--GGGTG-GGG---GTGCG--ATCG---CAtgtaagaatgccta
gi|13 : gggactcatagtaaaggaaattctataTAT-GTTGTAC--ACACCTGTTTTATAATAACTT-CATCT-CTGT-ATTGACT----A-------AACAAAACTAAATTTTGCAAGCATCCA-C-AAAATT--AGGTTTCAGTGG-ATAAAA-ATCGCTTATGTC--GA-CA------AAATTCATGTTTGT
gi|15 : caatgCTAAGCGGGGC--CTGTCGACTGCAGCACGCGCAATGA-C-AAACCGA-------GTAAATGGGGATGTGG-AATATAACc
gi|16 : tccaacctcttgatgtacgtgtaagctagcCTAGGCAGGAT--CTGTCCACTACC------GCAATGA-C-AACCTGAGTTTTTTGTTAATAAGGAT
gi|18 : gacgttgtttatatatttttccacaagtatagataatgGGGC--ATATCGAC-GCA------GCAATGA-C-AGACCAAGTGTTTTATAAATCAGGGTATCG-AATGTAACATC-ATTT---CGAG----G------a
gi|2 : GGGTG-CC-----AAATGGGA--CTTCGATCTTTTT---GTAATCAAAATC-AATTCAATTTTGTGTATACAAAATTGAATTCCGT-------GATAC--T-ATATTTGTCGTACAAAAACAC-GATATAG--GTACTTGTT---TGATAACTT-CATTA-TTGT-AGTGACA----A--------AAATGAT---GTTT----A----TA--C-AAAATC--ATCTTTCAGTGG-AC-AAT-ATAATTTTGGTCATTA-C-------AAATTCA-TTTTGTA---GAC-AAA--------------A-GAC--AA------A-TTTGTCAAT-TAGAT-ATG--CAAATATT--AAA-CTT--A-TTTGCGCAC---AAAATTGATTTTTGTCATCTTAT-TT-GCATT--AGATAACAAAAGT-CATTTTTGTGAAACAAAT-TTGA-ATT-------CG-TACACAANNNNNN--NNNNNNNNNN-----NNNCGAAACTCTAA----CGACTTTT--GT-G-GTTCAG-TTTTGTT--------------AGACAAAGTGAAAATTCAATTTTGT-------GTCAATTTTGTAT-------GCAAATTAGTGTACAGAATCCAA-ATATGGATATGCAAATGAAAACTATCACCATGTTTTTGTAAG
gi|2 : gATTGATCAGCAGAC--TATTTCCTAACTTCCTGTGAGAAGCGCATGCTCCAGTATGGAATCTCATTTGTTAACAAATGGGG--------AGGCAGGTT--GTGCCGATTATT------GAAAAGA-T-AATCTGAAgaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtgattgatcagcagactatttcctaacttcctgtgagaagcgcatgctccagtatggaatctcatttgttaacaaatggggaggcaggttgtgccgattattgaaaagataatctgaa
gi|20 : ggggtgccaaatgggacttcgatctttttgtaatcaaaatcaattcaattttgtgtatacaaaattgaattccgtgatactatatttgtcgtacaaaaacacgatataggtacttgtttgataacttcattattgtagtgacaaaaatgatgtttatacaaaatcatctttcagtggacaatataattttggtcattacaaattcattttgtagacaaaagacaaatttgtcaattagatatgcaaatattaaacttatttgcgcacaaaattgatttttgtcatcttatttgcattagataacaaaagtcatttttgtgaaacaaatttgaattcgtacacaannnnnnnnnnnnnnnnnnncgaaactctaacgacttttgtggttcagttttgttagacaaagtgaaaattcaattttgtgtcaattttgtatgcaaattagtgtacagaatccaaatatggatatgcaaatgaaaactatcaccatgtttttgtaaggaggtctctcattacaatacttgtaagtgaatcccaatgattgacttctctctgcgttttctcttcttcaaaagcttaattgttcactcacattgaccagcagcaggatgaacgtgatccgtgtgCCAGGC-GGGTTACTGTCGATCGCA------GCAATGA-CAAAACCAAATGATTTGT
gi|21 : aaaatctcttCAATTTGC--CTAAAATCTCGCAC---CCCCTCTCCACAAAATTCTGGGTACAGGC
gi|22 : at---AAAATAGACTTTTGTTA-TCTAGATT-GCA-TTTAAATAACAAAAGTAAA-TTTTGCGtg
gi|23 : -----ACTAGGCAGGGC--CTGTCGACTGCA------GCAATGG-C-AAACCGAGTATTT
gi|3 : ttTTTAT-ATTAAATAGAA-----ACTAGGCAGGGC--CTATCCACAGCA------GCAATGA-C-AAACCGAATGTTTTGTTAATCGGGATATCGAAATGTAACATT-ATTT---CCAG----G------TCCGTAAACAAGG--GGG-A-AG--------------------TCCC---CCCCT-----GG-AAAATGCAAAATATA-CT----ATT--AAAGTAAGATTTTA-CT-CTAAATAT--C-G--GATA-TT-A---ATTA---G----TA-ATT--T--ACAGA-A-----------TTTG---TTAACT-A-AA-T-A-----T-TT---GAGGA-G-CA--ATT--A--TA--CGG-A-TTTTA-TT----ATC-CA------------TGA--CCG-TTG------T-ATCA-A-----GTCAGTAC
gi|3 : gAAATGCA-CT----AT---AAAGTCAGAATTCA-CT-CTGTGCAT--T-G--CCTA-TT-A---AT----------CA-ATT--T--GCtatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaatcaatttgcctaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|3 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcCAATTTGC--CTAAAATAT-GCAC---CTCC-CTCCTCActaaaatatgcacctccctcctcaggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : gtttatattaaatagaaactaggcagggcctatccacagcagcaatgacaaaccgaatgttttgttaatcgggatatcgaaatgtaacattatttccaggtccgtaaacaagggggaagtccccccctggaaaatgcaaaatatactattaaagtaagattttactctaaatatcggatattaattagtaatttacagaatttgttaactaaatatttgaggagcaattatacggattttattatccatgaccgttgtatcaagtcagtactatcaacagtgggcaaatgcactataaagtcagaattcactctgtgcattgcctattaat-----GG-AAGAAGCAAAATGTAACT----ATT--GAAGTAAGATTTTAACTACTGAATAT--T-GTCCCTAATT-A---ATTA---GGCCCCATATTAAT--ACAAA-AATTCATCTATTTTGGAATTTGAAG-A-AA-T-C-----TGCA---GAAGACG-CA--ATCAAA--TA--CGGCATTTTTATGT----ATC-CA------------TGACCCCGTTTGTATAC-T--TTA-A-----------ACCGCATACACTGGGGTGGGTGGGGGTGGGGGGGGGGCTACTCGCAAC-AAAACAGCACAC---ATCC-CTggtactgtctgattttgctgctttgaagaggtgtataccaaattcacaaaggtttcagtttaaaagaaataattgtatatatgcagaaagtacaattaatgcgtaacaacatttcaagtctatg
gi|4 : aggatagcattcctgaaacatggccaccaggcccttactgttaaTTGC--CTAAATTATCGCAC----TCC-CTCTTCAAAAGTCTGGGTACGGGTCTGAacaaagaaggcaagatttactcctgtacatttgactatattatcaattgcctaaattatcgcactccctcttcaaaagtctgggtacgggtctgatgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : aggatagcattcctgaaacatggccaccaggcccttactgttaaggaagaagcaaaatgtaactattgaagtaagattttaactactgaatattgtccctaattaattaggccccatattaatacaaaaattcatctattttggaatttgaagaaatctgcagaagacgcaatcaaatacggcatttttatgtatccatgaccccgtttgtatactttaaaccgcatacactggggtgggtgggggtggggggggggctactcgcaacaaaacagcacacatccctacaaagaaggcaagatttactcctgtacatttgactatattatcaaTAGGCAGGGC--CTGTTGACTGCA------GCAATAG-C-AAACCGAATGTTTTGTCAATCGGTATGTCA-AATGTAACATC-ATTT---CCAG----G------CCC-------------GT-ACGGG---GTGCA--TTTG---CACCCC---C---T-----GC-ATAAAGCAAAATGTA-TT----ATT--GAAGTCAGATTTTA-CT-CTGAATAT--T-G--CCTA-TT-A---ATGA---G----TA-ATT--T--ACAGA-AATTC-----TCTTTGAATTTAAAGAA-AA-T-C-----TGCT---GAAGACG-CA--ATT-AA--AA--TGG-A-TTTTATTT----ATC-CA------------TGA--CTG-TTG------T-ACCA-A-----GTCAGAACCG--TA-AC--------ACAGG---GGGGGGAGGGTG-TGTGCG-C----AT-TTGCAC---CCCC-CT--GCAAAAtgtcggcctggttttgaagaggtgcaaacacatattttgcacaataagtgcatatcaagttcaaaaattacgtgtaacatgcgg
gi|5 : GG--GGG-A-GGGTGTGTGCGCATTTG---CACCCC---CCT---------------GCAAAATGCA-CT----GTC--ACAGTCAGATTTCT-CT-CT---TACCGT-G--ACTA-TT-A---AT----------CA-ATT--T--GCtgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|5 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacacagggC--CTAAAATATCACAC---CTCC-TTCTT--AAAGT-TGGGTACGctaaaatatcacctaaaatatcacacctccttcttaaagttgggtacgtcgggtgttgatttct
gi|6 : taggcagggcctgttgactgcagcaatagcaaaccgaatgttttgtcaatcggtatgtcaaatgtaacatcatttccaggcccgtacggggtgcatttgcaccccctgcataaagcaaaatgtattattgaagtcagattttactctgaatattgcctattaatgagtaatttacagaaattctctttgaatttaaagaaaatctgctgaagacgcaattaaaatggattttatttatccatgactgttgtaccaagtcagaaccgtaacacaggggggggagggtgtgtgcgcatttgcacccccctgcaaaatgcactgtcacagtcagatttctctcttaccgtgactattaatcaatttgcctaaaatatcaTTTTC---GTAAACAAAATC-AA-----TTTTGTGTACACAAAATTGAATTCCGTCATAAATAAAAT--TCATTTTTATCACACAAAAATAT-GT------------TGTTTTATGATAACTT--ATTT-TTGT-ATTGCTAAGTTA-------TAGAAAGTT-ATATTT-CAG----TGGAC-AAAACT-GAATTAT--GTAG-ACGAAATAAAATTTTTGTCATGA-CAAATTTTAAATCCATTTTTGTA---GACAAAACTC--GATTTT-TCA--------------ATTTTGTTTGT-TATGT-ATG--CAAATATTGAAAA-CTT--A-TTTGCATAC---AAAATAGACTTTTGTCA-TCTAG-TT--------------------TGCATTCT---GAAACAAATA-TGA-TATTCGTACACAAAACGCAAACTGAAATTCTCGCGATTTAAAATGT----ACTCTAC--ATACAATTTTGTGTGG-AC-AAAATTCAGTT--------------tcgggtgttgatttct
gi|7 : aGCGACC-----GATTGGGGAGTTGT-ATCTTTTTTTGGTAATCAAAACCCAA-----TTTTGTGTACACAAA-TTGAATTCTGTC-ATAACAAAATGTC-ATTTTTGTTACACAAAAGTATTGTTGCA-----------TTTATAATAACTTTCATTTGTTGTTATTGATA----AGTTA---TACGAAATT-AGTTTTTCAA----TGA-CCAGAATTCAATTTTT--GTATTACGAAA-TCAATTTTTGTCACAAACA------AAATCCATTTTTGTA---GAC-AAACTTCAAATTTTGTCA-TGCAAAA--TTCAATTTTGTCAATATATGT-ATGGCCAAATATT--CAATCTTTCATTTTGCATACCCAAAAATATACTTTTGTTA-CTTAG-TTGGCA-T--AAATAACAAAAGTAAA-TTTTGTGAGATAAATtt
gi|8 : gggtA-T-AAATCGAATGGTTTGTCAATCGGCATGTCG-AATGTAACATA-ATTC---CCAG----G------CCC------------------------GT-CG--TTTG---CACCCC---t
gi|8 : CC---GGATACG-CA--ATT-AA--TA--CGG-A-TTTTATTT----ATT-CA------------AGA--CTG-TTGTAC-T-T-ATCATAATCATGTCAGGACCG--TACAC-CGG--GAAGAGG---GGGGGGGGGGacccccactgcccccggatacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|8 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccCAATTTGC--CTAAAATATCGCACAGTCTCC-CTTCTCCATTGTCTGGGTACGGGCCTGAgcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatcaatttgcctaaaatatcgcacagtctcccttctccattgtctgggtacgggcctgaattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
gi|9 : ataaatcgaatggtttgtcaatcggcatgtcgaatgtaacataattcccaggcccgtcgtttgcaccccacccccactgcccccggatacgcaattaatacggattttatttattcaagactgttgtacttatcataatcatgtcaggaccgtacaccgggaagagggggggggggggcattagcactccctgaaaaggcaccgttaaatttcactctgtacattaataatGCA------GCAATGAGC-GAAC--AAT--TTTG--AA-------GT-------TAACACC-ATTT---CCAGCTGTA------CCC-------AGG--GGG-A-GGG----TATG--TTTG---CCCCCC---CCCCC-----CC-TA----CAAAATGTA-CT----GTT--AAAGCAAGATTTT--CT-CTGAACCT--TAG--CCTA-TTCA---ATTA---G----TA-ATT--TTAGCAGA-AATTC-----TCTTTCATTTCGAAA-A-AA-TACATGTATACTTAGGAAGATG-TATTATT-AA--AAATGGG-A-TTTTATTTTTAAATT-CA------------TTA--CTG-TTATAT-CATAATCA-A-----GTTAGTA-CG--TGCAT-GGG--GGAGGGG---GGGattcggcttggatttgaagagggtgcatactatattactgtatatatactataagtttatgttcaagcgttatgtgcacctttctatcttgattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAAAATGAAATTAGTATAGTATTTAATTGAGGAGTGATTGGTCCATTAGAATCATTAGGTGAGAATTGTGATATGTAAAATGAAAGGGGGGGGGGGGGGGTTTCGAAA
Unaligned ( gi|17 ): GGGTCTGATGTCGGCCTGCGTTTGAAAAGGGTTCACACCATATTAACAAAGGAAATTAATGATTATATGCGGAAAGTAATTAATGAGTAACAA
Unaligned ( gi|19 ): CAAATTGAGACTCTTCCGAAAATCTACATGAGAGAAAAGTTTGTGTGGACAAAATTCAGTTATG
Unaligned ( gi|24 ): CGCATAGATAAAACATGCTTGCATACGTATACT