lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444 1111111111111111
lowQualScore : 111 1 111111 1111111111111111111 5555555555555555555555 2222 11111 33333333 22222 3333333333333 1111111111 11 1111 22222 1111 222222222 111 1 11 666666666666666666666 1 777777777777 22 99999999999999 1 333333 4 1 1 555555555555555555555555555555555555555555555555555555555555555555555555 1 222 1111111111111111 444 22
lowQualScore : 888 4 2 4 777 4 4 3 88 55 3 3 000000 3 3 8888888888888888888 66 0 777 66 66 0 2222222222222222222222 1111 11111 66 4 66 22222222 9 00000 8 0 4444444444444 5 4 7 666 55 55 6666666666 1 00 5 4444 2 44444 5 555 777 77 2222 0 666666666 8 5 222 1 6 8 88 000000000000000000000 2 8 99 000000000000 77 77777777777777 5 666666 3 777 0 5 7 555555555555555555555555555555555555555555555555555555555555555555555555 5 777 6 9999999999999999 666 6 6 77
lowQualScore : ... . . . ... . . . .. .. . . ...... . . ................... .. . ... .. .. . ...................... .... ..... .. . .. ........ . ..... . . ............. . . . ... .. .. .......... . .. . .... . ..... . ... ... .. .... . ......... . . ... . . . .. ..................... . . .. ............ .. .............. . ...... . ... . . . ........................................................................ . ... . ................ ... . . ..
lowQualScore : 000 0 5 0 000 0 0 6 66 00 6 6 555555 6 6 7777777777777777777 11 8 888 11 11 1 5555555555555555555555 1111 11111 11 4 11 44444444 3 00000 9 8 9999999999999 8 0 8 555 66 55 9999999999 0 88 0 1111 0 88888 0 888 666 99 1111 1 444444444 0 0 444 4 0 3 33 777777777777777777777 0 3 33 555555555555 55 55555555555555 5 000000 0 555 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000 0 000 0 0000000000000000 000 0 0 55
consensus : AAGGT--GGAA-TGACACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--AATG--AC--ANTA-GATCACAA-TTCTTTGT---CATTT-----ATT--T-T--TCA-----NANTTTTTTATTCAT-----TTT-TAAAC-G--------G-AAATTGAATTT-CATCAATTTT-A-AATTG-CAT--ACTCTA-GGAAT-TCTC-GT-TTTGC---TTTTTGAGATA-NT-CCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA-TA----TTTTTA-GTAAT--CATGC-TTTTTAA--ATTA-----ATT-CTNGNGAA---AGGGGCTTTTATAACATCAAACTTCAATNATCAAATCTTCAGAACTGGTGAGGTCAAAATTGTAACAACA-CTACGAATGGAAAATGCTCAACCATGCNTACGTATGAATATGCAACAGTCAAATTGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTCAGATTAAAATTCCCGCATGGAAAGTTTATTGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTGAGCGAGAAAAGGGTACATTATTGGCATAT
Reference ( gi|2 ) : AAGGT--CGAA-TGAGACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--AATA--AC--AATA-GACCATAA-TCCTTTGT---AATTT-----ATT--T-T--TCA-----AATTTTTTTATTCAT-----TTT-TAAAC-G--------A-AAATTGAATTT-CATCAATTCT-A-AATTG-CAT--ACTGTA-GGAAT-TTTC-AT-TTTGC---TTTTTGAGATA-AT-TCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA-TA----TTTTTA-GTCAT--CATGC-TTTTTTA--ATTG-----ATT-CTGGTAAA---AGGGGCTTTTTTAACAATAAACTTCAATT------TCTTGAAAACTGGT--GGTCAAATCTGTACCAACATCTACAAATAGAAAATG--CA--CATGTATGTTTATG-ATATGCAAAAGTCAAATAGAAA----------AAAAAAACAC----------------TTTT--AAAAATG-TT--AGTTAAG----AAATT-TCGCATGCAAGAGTTATCGTTCCTAAAATAGCTAG----CC-CAAT-CCA-CGTGGTTGTTTTTA-CAAGAAAGGGGTACAT--TTGGCATAT
gi|4 : AAGGT--GGAA-TGATACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AT------C-AA-TTCCCTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--ACTA--AC--AATA-GATTACAA-TTCTTTGT---CATTT-----ATT--T-T--ACA-----TAATTTTTTATTCAT-----TTT-TTAAC-G--------G-AAATTGAATTT-CATCAATTTT-A-AACTA-CAT--ACTGTA-GGAAT-TCTC-GT-TTTGT---ATTTTGAAATA-TT-TCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA-TA----TTTTTA-GTCAT--GATGC-TTTT
gi|9 : AAGGT--ATAA-TAACACA-CCTGCTG---G-T-TC-TT--TTCCT-GT-AC------C-AA-TTCCTC---------------------AG--A----T---CTG--T--CAGG--ACCCAGAA-GAC---AA-TTCTTTGT---CTTTC-----ACT--A-T--TCA-----CAGTTT---ATTCAT-----TATATTAAT-G--------A-AA-TTGAATTT-CATAAATTTT-A-TATTG-CAT--GCTCCA-GGACT-TCTa
gi|16 : tAAGGT--GGAA-TGATAAA-CCTGATG---ACT-TT-TT--T--CT-GT-AC------T-AA-TTCCTTGAAT-A-AT-T------
gi|18 : tAAGGT--GGAA-TGATGTA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTTG
gi|1 : tAGGTTGCGAA-TGA--CA-C-TGGTG---A-T-ATATTAAT--CT-GTCAC------C-AAATTCCTTGAAGGA-AT-TTAACAAA--AAG--AAACAT---CTGGGTCAAAGA--AC--ATAA-GAT--TAA-TGTCTTGTCATAATTA-----ACT--C-T--TTAGCCATAACTTTTTTATTCATCCCATTTT-TAAACCG--------G-CAATTGAATTTTCATCAATTTTTA-AATTGGCAT--ACTGTATGGAATATCTC-GGATTTGC---TTTTTGAGAGATATATCTGTATTA-C-ATCT-CTG--ATT----GAAACTACAACAAAACAACTAATACTCTTTA-GTCATCACATGCTTTTTTTATTATTA-----AGT-CTGGTAAAATTAGGGTCTTTTTTAACAATAAAGTTCAATCATCAAATCT--AGAACTGGTGAGGTCAAAATTGTAACAACA-CTACAAA-AGAAAATG--CA--CATGTCTACGTATGAATATGCAACAGTCAAATTGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTCAGATTAAAATTCCCGCATGGAAAGTTTATTGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTGAGCGAGAAAAGGGTACATTATTGGCAT
gi|8 : AGAT--GAAA-TGACACA-CCTGATGGGGA-T-TT-TT--C--TT-GT-ACATGTACC-AA-TTGCACATAT-A-TT-T------A--TCG--AAGCATAATCTG--T--TATG--AC--TCCA-GA---TA-----TTTGT---TATTTTCCCAGTT--T-T--TT--------TTTTTTTTTTAATC----TTT-TAAA--G--------G-AATTTGAATGT-GATCAATCTT-A-AATTG-CAA--ACTTTA-tccgtttcctatctaaaggcaattaccttctttcccagataagtgagatggataaagaagaaaatatgcaatgttataagatcctttttatagaattttagcgcaaactaagaaaataaagttggggttagatttgtagcattctttgcttctgagatgatgcagtataatacggaaattaaaatgcacaattctgtaattatggacataaatgttgtcaacaataacatatttggggcaacaaataatacagtcaatagttcataatatacaactagagagtaattgagaaaaagaaaatcatatgcatacgcagagcaacagacataattaaaaacaaaatcagtgcacttcaaaaataaatgaagaccacatattgaattcaatgatctcataactacctactattgtaagtcagtgactaacaactttcgtcttatataaggttaatatgcttgtacccaatttggcaggaggggggggtgacaaaatgttacagacacacggctgagcacttacaaagagttg
gi|11 : cttGGT---GAA-TGAGGCA-GTTGGTG---A-T-TT-AT--T--CT-GT-GC------C-AA-TTTCTTGAAT-A-AT-T------A--TAG--AAACAC---CTG--C--AATG--AC--CCTA-GATCACAA-TTCTTCGT---AATCT-----CTT--T-T--TCAT----AGTTTTTTT-TTCAT-----TTT-T
gi|5 : GGT--GGAA-TGAGACA--CTGGTG---A-T-TT-TTC-T--CTGGT-AA------A-AA-TT-CTTGAGT-A-TT-A------A--TAG--AAACAT----TG--T--AATA------AATAGGATCACAATTCCTTTGT---CATTT-----ATT--T-TACTCAT----AATTTTTAT-TTCAT-----TTT-TTGAC-GCTCGGTTTA-AA----GATTT-CATCG--TCT----GTT--TATCGAGTGT--GAAATATTTCGGT-TTTG----TCTGTCCGATACAT-GTAGT-TTAGCTATATACTGTTAAT----GAAAA---AGCAAAA
gi|14 : GT--GGAA-TG-TACA-CCTGGTG---A-T-TT-TT--T--CT-GT-A-------C-AT-TTCCTTG-AT-A-AT-T------A--TAG--AAACAT---CTG--T--
gi|3 : T--CGAAATGACACAGCTTGATG---T-TGTT-TC--C--CT-GT-AC------CTAA-TTC-------------------------G--AGAT-T---CTG--T--A-TAGGAC--CTCA-GGTTACA----CATTG-----ATTT-----GTTCAT-T--TCA-----G--TTTTTCGTTCAT-----TTT-TATAT-------------------ATTT--ATAAATTTT-A-AATTT-CAC--ACTCTT-ATA---CTTC--T-TTCAC---TTTTGAAAATA--T-CCTGT-TTA-CCATTC-AAG--AAT----TAAATTGCAACAAAACAA-TC----ATTTTA-GTAAT--TATTTATTCTTAA--ATT-------TT-TTTGC-AA---AGGGGTTTTTATAAGATCAAACttta
gi|7 : aaT-TC--T--CG-AT-AC------C-AA-TTTCTCAGGT-ACATAT------ACTTAGGCACACAT---CTG--T--AATG--GT--ATT--------------TTTCT-----TTC-----ATT--T-A--TGA-----GAATGGTTTATTCAAA----TTT-TAAA--G--------ATAAACTGAATTT-CATATATT-T-ACAATCG-TAT--GCT----------TCCT-AT-TTTGTGTGTTTT---GATA-AA-CCTGT-TTA-CCACAT-TTG--AAT----AAAAATACAAT--AGCAA-CA-----TTTTA-GTAAC--TATAC-TT
gi|10 : T-----ATC--TAT--TCA-----CAGTTTTTCTTTCAT-----TTTATAAA--G--------T-AAATTGGATTT-CACAAATTTT-A-AAGTT-CAC--TCTCTA-GG-AC-TTCC-CT-CTTAA---GTTGTGAGATA-TT-CCTGT-TTA-CGATGC-CAG--AAT----TAAAATga
gi|6 : ttcttttagccag-G--------A-AAATTGAACTT-CATCAATTTT-T-GATTG-CAC--ATTCCG-GAACT-TCTC-AT-TTTGT---CTTTCGGGAT------------TA------T-CTG--AATTATAGAAAACATAATAAAGCA--TC----TCTTCAAGTAAC--CATAC-TTTTCAA--ATTACATGTATTTCTAAAGAA---AGTGG-TTTTATAACATCAATCTTCAATG------TCTTCAAAACTGGT--GGTTAAA--TG----------TATGAATGGAAAATACTCAACCATGCATATTg
gi|13 : AATTGAATTT-CATCAATTTT-A-AACTG-CAT--ACTTTA-GGAAT-TCTC-AT-TTTGC---TTGTTGAGATA-TT-TCTGT-TTA-CC
gi|15 : AAAGGGTACAT--TTGGCATAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CAGTATAATAAAATAAAATGCATTCTGTAGTAGAGCATAATGTTGTCAACAATGCATATGCAACATCAGTAAGATAAATATATCTAAAAGAATCTGAAGAAAAAGAAAATCATA
Unaligned ( gi|17 ): TGGCATATTCTTTCCTCTAAAGGCAATGACATTCTTTCCCAAATAAGTGAAAAAT
Alignments
lowQualScore : 11111111111 11111111 11111 22222222222 11111 111 1111 1111 11111 33333333 11 111 5555555 11 33 2222222222222 3333333 1 4444444444 5555555555555555 11 1 11 2222 1 2222 1 1 1 1 11
lowQualScore : 2 3 666 3 3 3 77 44 3 3 999999 3 3 555 3 33 33333333333 55 777 55 6666 55 4 9 2 4 55 55 11111111 55 4 55 777 1 66 0 4 00000 4 4 4 66666666666 3 1 666 3 3 3 3 5555 3 8 99 4 00000 2 66 333 4 4 2 1 5 66 0000 4444 6 6 6 3 99 6 88888 99999999 1 11 777 6 4 4 9999999 44 0 00 1111111111111 0 88 1111111 11 2 5 2 4 1111111111 9999999999999999 88 5 88 2 4444 5 2 3 3333 5 5 5 2 5 88
lowQualScore : . . ... . . . .. .. . . ...... . . ... . .. ........... .. ... .. .... .. . . . . .. .. ........ .. . .. ... . .. . . ..... . . . ........... . . ... . . . . .... . . .. . ..... . .. ... . . . . . .. .... .... . . . . .. . ..... ........ . .. ... . . . ....... .. . .. ............. . .. ....... .. . . . . .......... ................ .. . .. . .... . . . .... . . . . . ..
lowQualScore : 6 6 444 6 6 3 99 66 3 3 666666 3 3 222 6 77 11111111111 55 000 55 5555 77 4 2 9 0 55 55 99999999 55 0 55 000 0 44 3 0 00000 0 0 0 22222222222 6 4 444 6 6 6 6 2222 0 0 99 4 33333 4 11 333 4 4 9 0 0 99 6666 2222 0 7 7 0 22 7 88888 00000000 0 55 555 5 0 0 3333333 00 7 33 3333333333333 7 00 7777777 77 5 5 5 0 5555555555 0000000000000000 00 5 00 5 5555 0 5 0 5555 5 0 5 5 0 55
consensus : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTA-GATCACAATT-CTTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTC-AT-----T-T-T-TAAAC-G---G----AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTC-GT-TTTG-C---TTTTCGAGA--TATTCCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTNATCA--TGC-TTTTTN-A--ATTA-A-----TTCTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN------TCTT-AAAACTGGT--GGTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
Reference ( family-1311 ) : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTA-GATCACAATT-CTTT--GTCAT--TT-----A--TT--T-T--T---CANAN-TTTTTTATTC-AT-----T-T-T-TAAAC-G---G----AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTCTA-GGAAT-TCTC-GT-TTTG-C---TTTTTGAGA--TANTCCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTAATCA--TGC-TTTTTA-A--ATTA-A-----TTCTNGNGAAA---GGGGCTTTTATAACATCAAACTTCAATNATCAAATCTTCAGAACTGGTGAGGTCAAAATTGTAACAACA-CTACGAATGGAAAATGCTCAACCATGCNTACGTATGAATATGCAACAGTCAAATTGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTCAGATTAAAATTCCCGCATGGAAAGTTTATTGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTGAGCGAGAAAAGGGTACATTATTGGCATAT
gi|1 : GAATGACAC----TGGTG---A-T-ATATTAAT--CT-GTCAC------C-AAATTCCTTGAAGGA-AT-TTAACAAA--AAG--AAACAT---CTGGGTCAA-AGAACATAA-GATTA--ATG-TCTT--GTCATAATT-----AACTC--T-T--TAGCCATAACTTTTTTATTC-ATCCCATT-T-T-TAAACCG---G----CAATTGAATTTTCATCA---AT-TTTTA-AATTGGCATACTGTATGGAATATCTC-GGATTTG-C---TTTTTGAGAGATATATCTGTATTA-C-ATCT-CTG--ATT----GAAACTACAACAAAACAACTAATACTCTTT-AGTCATCACATGC-TTTTTTTATTATTA-A-----GTCTGGTAAAATTAGGGTCTTTTTTAACAATAAAGTTCAATCATCAAATCT--AGAACTGGTGAGGTCAAAATTGTAACAACA-CTACAAA-AGAAAATGC---AC-ATGTCTACGTATGAATATGCAACAGTCAAATTGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTCAGATTAAAATTCCCGCATGGAAAGTTTATTGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTGAGCGAGAAAAGGGTACATTATTGGCAT
gi|10 : aggttgcTT-CTTTTAGCCAG--T------A--TC--TAT--T---CACAG-TTTTTCTTTC-AT-----T-T-TATAAA--G---T----AAATTGGATTT-CACAA---AT-TTT-A-AAGTT-CACTCTCTA-GGACT-TCCC--T-CTTA-A---GTTGTGAGA--TATTCCTGT-TTA-CGATGC-CAG--AAT----TAAAATtccgtttcctatctaaaggcaattaccttctttcccagataagtgagatggataaagaagaaaatatgcaatgttataagatcctttttatagaattttagcgcaaactaagaaaataaagttggggttagatttgtagcattctttgcttctgagatgatgcagtataatacggaaattaaaatgcacaattctgtaattatggacataaatgttgtcaacaataacatatttggggcaacaaataatacagtcaatagttcataatatacaactagagagtaattgagaaaaagaaaatcatatgcatacgcagagcaacagacataattaaaaacaaaatcagtgcacttcaaaaataaatgaagaccacatattgaattcaatgatctcataactacctactattgtaagtcagtgactaacaactttcgtcttatataaggttaatatgcttgtacccaatttggcaggaggggggggtgacaaaatgttacagacacacggctgagcacttacaaagagttg
gi|11 : GGTG-AATGAGGCA-GTTGGTG---A-T-TT-AT--T--CT-GT-GC------C-AA-TTTCTTGAAT-A-AT-T------A--TAG--AAACAC---CTG--C--A-ATGACCCTA-GATCACAATT-CTTC--GTAAT--CT-----C--TT--T-T--T---CATAG-TTTTTTTTTC-AT-----T-T-T-Tg
gi|13 : AATTGAATTT-CATCA---AT-TTT-A-AACTG-CATACTTTA-GGAAT-TCTC-AT-TTTG-C---TTGTTGAGA--TATTTCTGT-TTA-CC
gi|14 : GTGGAATG-TACA-CCTGGTG---A-T-TT-TT--T--CT-GT-A-------C-AT-TTCCTTG-AT-A-AT-T------A--TAG--AAACAT---CTG--T--
gi|16 : AAGGTGGAATGATAAA-CCTGATG---ACT-TT-TT--T--CT-GT-AC------T-AA-TTCCTTGAAT-A-AT-T------ttta
gi|18 : tAAGGTGGAATGATGTA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTTG
gi|2 : tAAGGTCGAATGAGACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATAACAATA-GACCATAATC-CTTT--GTAAT--TT-----A--TT--T-T--T---CAAAT-TTTTTTATTC-AT-----T-T-T-TAAAC-G---A----AAATTGAATTT-CATCA---AT-TCT-A-AATTG-CATACTGTA-GGAAT-TTTC-AT-TTTG-C---TTTTTGAGA--TAATTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTCATCA--TGC-TTTTTT-A--ATTG-A-----TTCTGGTAAAA---GGGGCTTTTTTAACAATAAACTTCAATT------TCTTGAAAACTGGT--GGTCAAATCTGTACCAACATCTACAAATAGAAAATG--CA--CATGTATGTTTATG-ATATGCAAAAGTCAAATAGAAA----------AAAAAAACAC----------------TTTT--AAAAATG-TT--AGTTAAG----AAATT-TCGCATGCAAGAGTTATCGTTCCTAAAATAGCTAG----CC-CAAT-CCA-CGTGGTTGTTTTTA-CAAGAAAGGGGTACAT--TTGGCATAT
gi|3 : GAAATGACACAGCTTGATG---T-TGTT-TC--C--CT-GT-AC------CTAA-TTC-------------------------G--AGAT-T---CTG--T--ATAGGACCTCA-GGTTACA----CATT--G--AT--TT-----G--TTCAT-T--T---CAG---TTTTTCGTTC-AT-----T-T-T-TA-----------------TATATTT--ATAA---AT-TTT-A-AATTT-CACACTCTT-ATACT-TC----T-TTCA-C---TTTTGAAAA--TA-TCCTGT-TTA-CCATTC-AAG--AAT----TAAATTGCAACAAAACAA----TCAT-TTT-AGTAATTA--TTTATTCTTA-A--ATT--------TTTTTGC-AAA---GGGGTTTTTATAAGATCAAAC
gi|4 : aatcAAGGTGGAATGATACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AT------C-AA-TTCCCTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-CTAACAATA-GATTACAATT-CTTT--GTCAT--TT-----A--TT--T-T--A---CATAA-TTTTTTATTC-AT-----T-T-T-TTAAC-G---G----AAATTGAATTT-CATCA---AT-TTT-A-AACTA-CATACTGTA-GGAAT-TCTC-GT-TTTG-T---ATTTTGAAA--TATTTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTCATGA--TGC-TTTT
gi|5 : GGTGGAATGAGACA--CTGGTG---A-T-TT-TTC-T--CTGGT-AA------A-AA-TT-CTTGAGT-A-TT-A------A--TAG--AAACAT----TG--T--A-ATA--AATAGGATCACAATTCCTTT--GTCAT--TT-----A--TT--T-TACT---CATAA-TTTTTATTTC-AT-----T-T-T-TTGAC-GCTCGGTTTAAA---GATTT-CATCGTCTGT-TT-----ATCG----AGTGT--GAAATATTTCGGT-TTTGTC---TGTCCGATA--CA-TGTAGT-TTAGCTATATACTGTTAAT----GAAAA---AGCAAAAa
gi|6 : -G---A----AAATTGAACTT-CATCA---AT-TTT-T-GATTG-CACATTCCG-GAACT-TCTC-AT-TTTG-T---CTTTCGGGA--T----------------TAT-CTG--AATTATAGAAAACATAATAAAGC-A----TCTC-TTCAAGTAACCA--TAC-TTTTCA-A--ATTACATGTATTTCTAAAGAAA---GTGG-TTTTATAACATCAATCTTCAATG------TCTTCAAAACTGGT--GGTTAAA--TG----------TATGAATGGAAAATACTCAACCATGCATA
gi|7 : T-TC--T--CG-AT-AC------C-AA-TTTCTCAGGT-ACATAT------ACTTAGGCACACAT---CTG--T--A-ATGGTATT----T-----TT-CTT----TCAT--TT-----A-----------T---GAGAA-TGGTTTATTCAAA-----T-T-T-TAAAG-A---T----AAACTGAATTT-CAT-----ATATTT-ACAATCG-TATGC---------T-TCCT-AT-TTTG-TGTGTTTT---GA--TAAACCTGT-TTA-CCACAT-TTG--AAT----AAAAATACAAT--AGCAA----CA-T-TTT-AGTAACTA--TAC-TTtt
gi|8 : AGATGAAATGACACA-CCTGATGGGGA-T-TT-TT--C--TT-GT-ACATGTACC-AA-TTGCACATAT-A-TT-T------A--TCG--AAGCATAATCTG--T--T-ATGACTCCA-GAT----ATT----T--GTTAT--TTTCCCAG--TT--T-T--T---TTTTT-TTTTTTAATC--------T-T-T-TAAA--G---G----AATTTGAATGT-GATCA---AT-CTT-A-AATTG-CAAACTTTA-ga
gi|9 : cttAAGGTATAATAACACA-CCTGCTG---G-T-TC-TT--TTCCT-GT-AC------C-AA-TTCCTC---------------------AG--A----T---CTG--T--C-AGGAC-CCA-GAAGACAATT-CTTT--GTCTT--TC-----A--CT--A-T--T---CACAG-TTT---ATTC-AT-----TATAT-TAA---T---G----AAATTGAATTT-CATAA---AT-TTT-A-TATTG-CATGCTCCA-GGACT-TCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGTATAATAAAATAAAATGCATTCTGTAGTAGAGCATAATGTTGTCAACAATGCATATGCAACATCAGTAAGATAAATATATCTAAAAGAATCTGAAGAAAAAGAAAATCATA
Unaligned ( gi|15 ): AAAGGGTACATTTGGCATATTCTTTCCTTTAAAGGCAATTACCTTCTTTCCCAGATA
Unaligned ( gi|17 ): TGGCATATTCTTTCCTCTAAAGGCAATGACATTCTTTCCCAAATAAGTGAAAAAT
Alignments
lowQualScore : 111111111111111111111 11111111 11111 22222222222 1111 11111 1111 1111 11111 33333333 111 11 4444444 11 5555555555555 3333333 1 4444444444 5555555555555555 11 1 11 2222 1 2222 1 1 1 1 11
lowQualScore : 2 3 666 3 3 3 77 44 3 3 999999 3 3 444444444444444444444 55 777 55 6666 88 4 9 2 4 55 55 11111111 99999999999 3 55 0 44444 4 4 4 77777777777 3 1 666 3 3 3 3 5555 3 8 0000 00000 7 66 99 4 4 2 1 5 66 0000 4444 6 6 6 1 99 6 55555 99999999 0 88 777 6 1 1 44 2222222 88 9999999999999 0 7 8888888 2 5 1 1 1111111111 9999999999999999 88 5 88 1 4444 5 1 1 3333 5 5 5 1 5 88
lowQualScore : . . ... . . . .. .. . . ...... . . ..................... .. ... .. .... .. . . . . .. .. ........ ........... . .. . ..... . . . ........... . . ... . . . . .... . . .... ..... . .. .. . . . . . .. .... .... . . . . .. . ..... ........ . .. ... . . . .. ....... .. ............. . . ....... . . . . .......... ................ .. . .. . .... . . . .... . . . . . ..
lowQualScore : 6 6 444 6 6 3 99 66 3 3 666666 3 3 999999999999999999999 55 000 55 5555 33 4 2 9 0 55 55 99999999 99999999999 9 44 3 00000 0 0 0 77777777777 6 4 444 6 6 6 6 5555 0 0 7777 33333 2 11 22 4 4 9 0 0 99 6666 2222 0 7 7 0 22 7 88888 00000000 2 22 555 5 0 0 33 0000000 33 7777777777777 7 3 0000000 5 5 0 0 5555555555 0000000000000000 00 5 00 0 5555 0 0 0 5555 5 0 5 0 0 55
consensus : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTAG-ATCACAATTC-TTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTCG-T-TTTG-C---TTTTCGAGA--TATTTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTNATCA--TGC-TTTTTN-A--ATTA-A-----TTCTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
Reference ( family-1311 ) : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTAG-ATCACAATTC-TTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTCG-T-TTTG-C---TTTTCGAGA--TATTCCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTNATCA--TGC-TTTTTN-A--ATTA-A-----TTCTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
gi|1 : GAATGACAC----TGGTG---A-T-ATATTAAT--CTG-TCAC------C-AAATTCCTTGAAGGA-AT-TTAACAAA--AAG--AAACAT---CTGGGTCAA-AGAACATAAG-ATTA--ATGT-CTT--GTCATAATT-----AACTC--T-T--TAGCCATAACTTTTTTATTCATCCCATT-T-T-TAAACCG----G---CAATTGAATTTTCATCA---AT-TTTTA-AATTGGCATACTGTATGGAATATCTCG-GATTTG-C---TTTTTGAGAGATATATCTGTATTA-C-ATCT-CTG--ATT----GAAACTACAACAAAACAACTAATACTCTTT-AGTCATCACATGC-TTTTTTTATTATTA-A-----GTCTGGTAAAATTAGGGTCTTTTTTAACAATAAAGTTCAATCATCAAATCT-AGAACTGGTGAGGTCAAAATTGTAACAACA-CTACAAA-AGAAAATGC---AC-ATGTCTACGTATGAATATGCAACAGTCAAATTGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTCAGATTAAAATTCCCGCATGGAAAGTTTATTGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTGAGCGAGAAAAGGGTACATTATTGGCAT
gi|10 : aggttgcTTC-TTTTAGCCAG--T------A--TC--TAT--T---CACAG-TTTTTCTTTCAT-----T-T-TATAAA--G----T---AAATTGGATTT-CACAA---AT-TTT-A-AAGTT-CACTCTCTA-GGACT-TCCC--T-CTTA-A---GTTGTGAGA--TATTCCTGT-TTA-CGATGC-CAG--AAT----TAAAATtccgtttcctatctaaaggcaattaccttctttcccagataagtgagatggataaagaagaaaatatgcaatgttataagatcctttttatagaattttagcgcaaactaagaaaataaagttggggttagatttgtagcattctttgcttctgagatgatgcagtataatacggaaattaaaatgcacaattctgtaattatggacataaatgttgtcaacaataacatatttggggcaacaaataatacagtcaatagttcataatatacaactagagagtaattgagaaaaagaaaatcatatgcatacgcagagcaacagacataattaaaaacaaaatcagtgcacttcaaaaataaatgaagaccacatattgaattcaatgatctcataactacctactattgtaagtcagtgactaacaactttcgtcttatataaggttaatatgcttgtacccaatttggcaggaggggggggtgacaaaatgttacagacacacggctgagcacttacaaagagttg
gi|11 : GGTG-AATGAGGCA-GTTGGTG---A-T-TT-AT--T--CTG-T-GC------C-AA-TTTCTTGAAT-A-AT-T------A--TAG--AAACAC---CTG--C--A-ATGACCCTAG-ATCACAATTC-TTC--GTAAT--CT-----C--TT--T-T--T---CATAG-TTTTTTTTTCAT-----T-T-T-Tg
gi|13 : AATTGAATTT-CATCA---AT-TTT-A-AACTG-CATACTTTA-GGAAT-TCTCA-T-TTTG-C---TTGTTGAGA--TATTTCTGT-TTA-CC
gi|14 : GTGGAATG-TACA-CCTGGTG---A-T-TT-TT--T--CTG-T-A-------C-AT-TTCCTTG-AT-A-AT-T------A--TAG--AAACAT---CTG--T--
gi|16 : AAGGTGGAATGATAAA-CCTGATG---ACT-TT-TT--T--CTG-T-AC------T-AA-TTCCTTGAAT-A-AT-T------ttta
gi|18 : tAAGGTGGAATGATGTA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTTG
gi|2 : tAAGGTCGAATGAGACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATAACAATAG-ACCATAATCC-TTT--GTAAT--TT-----A--TT--T-T--T---CAAAT-TTTTTTATTCAT-----T-T-T-TAAAC-G----A---AAATTGAATTT-CATCA---AT-TCT-A-AATTG-CATACTGTA-GGAAT-TTTCA-T-TTTG-C---TTTTTGAGA--TAATTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTCATCA--TGC-TTTTTT-A--ATTG-A-----TTCTGGTAAAA---GGGGCTTTTTTAACAATAAACTTCAATT-TC----TTGAAAACTGGTG--GTCAAATCTGTACCAACATCTACAAATAGAAAATG--CA--CATGTATGTTTATG-ATATGCAAAAGTCAAATAGAAA----------AAAAAAACAC----------------TTTT--AAAAATG-TT--AGTTAAG----AAATT-TCGCATGCAAGAGTTATCGTTCCTAAAATAGCTAG----CC-CAAT-CCA-CGTGGTTGTTTTTA-CAAGAAAGGGGTACAT--TTGGCATAT
gi|3 : GAAATGACACAGCTTGATG---T-TGTT-TC--C--CTG-T-AC------CTAA-TTC-------------------------G--AGAT-T---CTG--T--ATAGGACCTCAG-GTTACA---C-ATT--G--AT--TT-----G--TTCAT-T--T---CA--G-TTTTTCGTTCAT-----T-T-T-TATAT-----------------ATTT--ATAA---AT-TTT-A-AATTT-CACACTCTT-ATACT-TCT-----TTCA-C---TTTTGAAAA--TAT-CCTGT-TTA-CCATTC-AAG--AAT----TAAATTGCAACAAAACAA----TCAT-TTT-AGTAATTA--TTTATTCTTA-A--ATT--------TTTTTGC-AAA---GGGGTTTTTATAAGATCAAAC
gi|4 : aatcAAGGTGGAATGATACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AT------C-AA-TTCCCTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-CTAACAATAG-ATTACAATTC-TTT--GTCAT--TT-----A--TT--T-T--A---CATAA-TTTTTTATTCAT-----T-T-T-TTAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AACTA-CATACTGTA-GGAAT-TCTCG-T-TTTG-T---ATTTTGAAA--TATTTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTCATGA--TGC-TTTT
gi|5 : GGTGGAATGAGACA-C-TGGTG---A-T-TT-TTC-T--CTGGT-AA------A-AA-TTCTT-GAGT-A-TT-A------A--TAG--AAACAT----TG--T--A-ATAA--ATAGGATCACAATTCCTTT--GTCAT--TT-----A--TT--T-TACT---CATAA-TTTTTATTTCAT-----T-T-T-TTGAC-GCTCGGTTTAAA---GATTT-CATCGTCTGT-TT-----ATCG----AGTGT--GAAATATTTCGGT-TTTGTC---TGTCCGATA--CATGTA-GT-TTAGCTATATACTGTTAAT----GAAAA---AGCAAAAa
gi|6 : -G----A---AAATTGAACTT-CATCA---AT-TTT-T-GATTG-CACATTCCG-GAACT-TCTCA-T-TTTG-T---CTTTCGGGA--T----------------TAT-CTG--AATTATAGAAAACATAATAAAGC-A----TCTC-TTCAAGTAACCA--TAC-TTTTCA-A--ATTACATGTATTTCTAAAGAAA---GTGG-TTTTATAACATCAATCTTCAATG-TC----TTCAAAACTGGTG--GTTAAA--TG----------TATGAATGGAAAATACTCAACCATGCATA
gi|7 : T-TC--T--CGA-T-AC------C-AA-TTTCTCAGGT-ACATAT------ACTTAGGCACACAT---CTG--T--A-ATGGTATT----T-----TTC-TTT----CAT--TT-----A--TG------------AGAA-TGGTTTATTCAAA----T-T-T-TAAAG-A----T---AAACTGAATTT-CAT-----ATATTT-ACAATCG-TATGCT----------TCCTA-T-TTTG-TGTGTTTT---GA--TAAACCTGT-TTA-CCACAT-TTG--AAT----AAAAATACAAT--AGCAA----CA-T-TTT-AGTAACTA--TAC-TTtt
gi|8 : AGATGAAATGACACA-CCTGATGGGGA-T-TT-TT--C--TTG-T-ACATGTACC-AA-TTGCACATAT-A-TT-T------A--TCG--AAGCATAATCTG--T--T-ATGACTCCAG-AT----ATT----T--GTTAT--TTTCCCAG--TT--T-T--T---TTTTT-TTTTTTAATC-------T-T-T-TAAA--G----G---AATTTGAATGT-GATCA---AT-CTT-A-AATTG-CAAACTTTA-ga
gi|9 : cttAAGGTATAATAACACA-CCTGCTG---G-T-TC-TT--TTCCTG-T-AC------C-AA-TTCCTC---------------------AG--A----T---CTG--T--C-AGGAC-CCAG-AAGACAATTC-TTT--GTCTT--TC-----A--CT--A-T--T---CACAG-TTT---ATTCAT-----TATAT-TAA---T----G---AAATTGAATTT-CATAA---AT-TTT-A-TATTG-CATGCTCCA-GGACT-TCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGTATAATAAAATAAAATGCATTCTGTAGTAGAGCATAATGTTGTCAACAATGCATATGCAACATCAGTAAGATAAATATATCTAAAAGAATCTGAAGAAAAAGAAAATCATA
Unaligned ( gi|15 ): AAAGGGTACATTTGGCATATTCTTTCCTTTAAAGGCAATTACCTTCTTTCCCAGATA
Unaligned ( gi|17 ): TGGCATATTCTTTCCTCTAAAGGCAATGACATTCTTTCCCAAATAAGTGAAAAAT
Alignments
lowQualScore : 111111111111111111111 11111111 11111 22222222222 1111 11111 1111 1111 11111 33333333 111 11 4444444 11 5555555555555 3333333 1 4444444444 5555555555555555 11 1 11 2222 1 2222 1 1 1 1 11
lowQualScore : 2 3 666 3 3 3 77 44 3 3 999999 3 3 444444444444444444444 55 777 55 6666 88 4 9 2 4 55 55 11111111 99999999999 3 55 0 44444 4 4 4 77777777777 3 1 666 3 3 3 3 5555 3 8 0000 00000 7 66 66 4 4 2 1 5 66 0000 4444 6 6 6 1 99 6 55555 99999999 0 88 777 6 1 1 44 2222222 88 9999999999999 0 7 8888888 2 5 1 1 1111111111 9999999999999999 88 5 88 1 4444 5 1 1 3333 5 5 5 1 5 88
lowQualScore : . . ... . . . .. .. . . ...... . . ..................... .. ... .. .... .. . . . . .. .. ........ ........... . .. . ..... . . . ........... . . ... . . . . .... . . .... ..... . .. .. . . . . . .. .... .... . . . . .. . ..... ........ . .. ... . . . .. ....... .. ............. . . ....... . . . . .......... ................ .. . .. . .... . . . .... . . . . . ..
lowQualScore : 6 6 444 6 6 3 99 66 3 3 666666 3 3 999999999999999999999 55 000 55 5555 33 4 2 9 0 55 55 99999999 99999999999 9 44 3 00000 0 0 0 77777777777 6 4 444 6 6 6 6 5555 0 0 7777 33333 2 11 22 4 4 9 0 0 99 6666 2222 0 7 7 0 22 7 88888 00000000 2 22 555 5 0 0 33 0000000 33 7777777777777 7 3 0000000 5 5 0 0 5555555555 0000000000000000 00 5 00 0 5555 0 0 0 5555 5 0 5 0 0 55
consensus : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTAG-ATCACAATTC-TTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTCG-T-TTTG-C---TTTTCGAGA--TATNTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTNATCA--TGC-TTTTTN-A--ATTA-A-----TTCTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
Reference ( family-1311 ) : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTAG-ATCACAATTC-TTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTCG-T-TTTG-C---TTTTCGAGA--TATTTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTNATCA--TGC-TTTTTN-A--ATTA-A-----TTCTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
gi|1 : GAATGACAC----TGGTG---A-T-ATATTAAT--CTG-TCAC------C-AAATTCCTTGAAGGA-AT-TTAACAAA--AAG--AAACAT---CTGGGTCAA-AGAACATAAG-ATTA--ATGT-CTT--GTCATAATT-----AACTC--T-T--TAGCCATAACTTTTTTATTCATCCCATT-T-T-TAAACCG----G---CAATTGAATTTTCATCA---AT-TTTTA-AATTGGCATACTGTATGGAATATCTCG-GATTTG-C---TTTTTGAGAGATATATCTGTATTA-C-ATCT-CTG--ATT----GAAACTACAACAAAACAACTAATACTCTTT-AGTCATCACATGC-TTTTTTTATTATTA-A-----GTCTGGTAAAATTAGGGTCTTTTTTAACAATAAAGTTCAATCATCAAATCT-AGAACTGGTGAGGTCAAAATTGTAACAACA-CTACAAA-AGAAAATGC---AC-ATGTCTACGTATGAATATGCAACAGTCAAATTGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTCAGATTAAAATTCCCGCATGGAAAGTTTATTGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTGAGCGAGAAAAGGGTACATTATTGGCAT
gi|10 : aggttgcTTC-TTTTAGCCAG--T------A--TC--TAT--T---CACAG-TTTTTCTTTCAT-----T-T-TATAAA--G----T---AAATTGGATTT-CACAA---AT-TTT-A-AAGTT-CACTCTCTA-GGACT-TCCC--T-CTTA-A---GTTGTGAGA--TATTCCTGT-TTA-CGATGC-CAG--AAT----TAAAATtccgtttcctatctaaaggcaattaccttctttcccagataagtgagatggataaagaagaaaatatgcaatgttataagatcctttttatagaattttagcgcaaactaagaaaataaagttggggttagatttgtagcattctttgcttctgagatgatgcagtataatacggaaattaaaatgcacaattctgtaattatggacataaatgttgtcaacaataacatatttggggcaacaaataatacagtcaatagttcataatatacaactagagagtaattgagaaaaagaaaatcatatgcatacgcagagcaacagacataattaaaaacaaaatcagtgcacttcaaaaataaatgaagaccacatattgaattcaatgatctcataactacctactattgtaagtcagtgactaacaactttcgtcttatataaggttaatatgcttgtacccaatttggcaggaggggggggtgacaaaatgttacagacacacggctgagcacttacaaagagttg
gi|11 : GGTG-AATGAGGCA-GTTGGTG---A-T-TT-AT--T--CTG-T-GC------C-AA-TTTCTTGAAT-A-AT-T------A--TAG--AAACAC---CTG--C--A-ATGACCCTAG-ATCACAATTC-TTC--GTAAT--CT-----C--TT--T-T--T---CATAG-TTTTTTTTTCAT-----T-T-T-Tg
gi|13 : AATTGAATTT-CATCA---AT-TTT-A-AACTG-CATACTTTA-GGAAT-TCTCA-T-TTTG-C---TTGTTGAGA--TATTTCTGT-TTA-CC
gi|14 : GTGGAATG-TACA-CCTGGTG---A-T-TT-TT--T--CTG-T-A-------C-AT-TTCCTTG-AT-A-AT-T------A--TAG--AAACAT---CTG--T--
gi|16 : AAGGTGGAATGATAAA-CCTGATG---ACT-TT-TT--T--CTG-T-AC------T-AA-TTCCTTGAAT-A-AT-T------ttta
gi|18 : tAAGGTGGAATGATGTA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTTG
gi|2 : tAAGGTCGAATGAGACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATAACAATAG-ACCATAATCC-TTT--GTAAT--TT-----A--TT--T-T--T---CAAAT-TTTTTTATTCAT-----T-T-T-TAAAC-G----A---AAATTGAATTT-CATCA---AT-TCT-A-AATTG-CATACTGTA-GGAAT-TTTCA-T-TTTG-C---TTTTTGAGA--TAATTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTCATCA--TGC-TTTTTT-A--ATTG-A-----TTCTGGTAAAA---GGGGCTTTTTTAACAATAAACTTCAATT-TC----TTGAAAACTGGTG--GTCAAATCTGTACCAACATCTACAAATAGAAAATG--CA--CATGTATGTTTATG-ATATGCAAAAGTCAAATAGAAA----------AAAAAAACAC----------------TTTT--AAAAATG-TT--AGTTAAG----AAATT-TCGCATGCAAGAGTTATCGTTCCTAAAATAGCTAG----CC-CAAT-CCA-CGTGGTTGTTTTTA-CAAGAAAGGGGTACAT--TTGGCATAT
gi|3 : GAAATGACACAGCTTGATG---T-TGTT-TC--C--CTG-T-AC------CTAA-TTC-------------------------G--AGAT-T---CTG--T--ATAGGACCTCAG-GTTACA---C-ATT--G--AT--TT-----G--TTCAT-T--T---CA--G-TTTTTCGTTCAT-----T-T-T-TATAT-----------------ATTT--ATAA---AT-TTT-A-AATTT-CACACTCTT-ATACT-TCT-----TTCA-C---TTTTGAAAA--TATC-CTGT-TTA-CCATTC-AAG--AAT----TAAATTGCAACAAAACAA----TCAT-TTT-AGTAATTA--TTTATTCTTA-A--ATT--------TTTTTGC-AAA---GGGGTTTTTATAAGATCAAAC
gi|4 : aatcAAGGTGGAATGATACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AT------C-AA-TTCCCTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-CTAACAATAG-ATTACAATTC-TTT--GTCAT--TT-----A--TT--T-T--A---CATAA-TTTTTTATTCAT-----T-T-T-TTAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AACTA-CATACTGTA-GGAAT-TCTCG-T-TTTG-T---ATTTTGAAA--TATTTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTCATGA--TGC-TTTT
gi|5 : GGTGGAATGAGACA-C-TGGTG---A-T-TT-TTC-T--CTGGT-AA------A-AA-TTCTT-GAGT-A-TT-A------A--TAG--AAACAT----TG--T--A-ATAA--ATAGGATCACAATTCCTTT--GTCAT--TT-----A--TT--T-TACT---CATAA-TTTTTATTTCAT-----T-T-T-TTGAC-GCTCGGTTTAAA---GATTT-CATCGTCTGT-TT-----ATCG----AGTGT--GAAATATTTCGGT-TTTGTC---TGTCCGATA--CATGTA-GT-TTAGCTATATACTGTTAAT----GAAAA---AGCAAAAa
gi|6 : -G----A---AAATTGAACTT-CATCA---AT-TTT-T-GATTG-CACATTCCG-GAACT-TCTCA-T-TTTG-T---CTTTCGGGA--T----------------TAT-CTG--AATTATAGAAAACATAATAAAGC-A----TCTC-TTCAAGTAACCA--TAC-TTTTCA-A--ATTACATGTATTTCTAAAGAAA---GTGG-TTTTATAACATCAATCTTCAATG-TC----TTCAAAACTGGTG--GTTAAA--TG----------TATGAATGGAAAATACTCAACCATGCATA
gi|7 : T-TC--T--CGA-T-AC------C-AA-TTTCTCAGGT-ACATAT------ACTTAGGCACACAT---CTG--T--A-ATGGTATT----T-----TTC-TTT----CAT--TT-----A--TG------------AGAA-TGGTTTATTCAAA----T-T-T-TAAAG-A----T---AAACTGAATTT-CAT-----ATATTT-ACAATCG-TATGCT----------TCCTA-T-TTTG-TGTGTTTT---GA--TAAACCTGT-TTA-CCACAT-TTG--AAT----AAAAATACAAT--AGCAA----CA-T-TTT-AGTAACTA--TAC-TTtt
gi|8 : AGATGAAATGACACA-CCTGATGGGGA-T-TT-TT--C--TTG-T-ACATGTACC-AA-TTGCACATAT-A-TT-T------A--TCG--AAGCATAATCTG--T--T-ATGACTCCAG-AT----ATT----T--GTTAT--TTTCCCAG--TT--T-T--T---TTTTT-TTTTTTAATC-------T-T-T-TAAA--G----G---AATTTGAATGT-GATCA---AT-CTT-A-AATTG-CAAACTTTA-ga
gi|9 : cttAAGGTATAATAACACA-CCTGCTG---G-T-TC-TT--TTCCTG-T-AC------C-AA-TTCCTC---------------------AG--A----T---CTG--T--C-AGGAC-CCAG-AAGACAATTC-TTT--GTCTT--TC-----A--CT--A-T--T---CACAG-TTT---ATTCAT-----TATAT-TAA---T----G---AAATTGAATTT-CATAA---AT-TTT-A-TATTG-CATGCTCCA-GGACT-TCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGTATAATAAAATAAAATGCATTCTGTAGTAGAGCATAATGTTGTCAACAATGCATATGCAACATCAGTAAGATAAATATATCTAAAAGAATCTGAAGAAAAAGAAAATCATA
Unaligned ( gi|15 ): AAAGGGTACATTTGGCATATTCTTTCCTTTAAAGGCAATTACCTTCTTTCCCAGATA
Unaligned ( gi|17 ): TGGCATATTCTTTCCTCTAAAGGCAATGACATTCTTTCCCAAATAAGTGAAAAAT
Alignments
lowQualScore : 111111111111111111111 11111111 11111 22222222222 1111 11111 1111 1111 11111 333333 1 111 11 4444444 11 5555555555555 3333333 1 4444444444 5555555555555555 11 1 11 2222 1 2222 1 1 1 1 11
lowQualScore : 2 3 666 3 3 3 77 44 3 3 999999 3 3 444444444444444444444 55 777 55 6666 88 4 9 2 4 55 55 11111111 99999999999 3 55 0 44444 4 4 4 77777777777 3 1 666 3 3 3 3 5555 3 8 0000 00000 7 66 55 4 4 2 1 5 66 0000 4444 6 6 6 1 99 6 55555 222222 0 0 88 777 6 1 1 44 2222222 88 9999999999999 0 7 8888888 2 5 1 1 1111111111 9999999999999999 88 5 88 1 4444 5 1 1 3333 5 5 5 1 5 88
lowQualScore : . . ... . . . .. .. . . ...... . . ..................... .. ... .. .... .. . . . . .. .. ........ ........... . .. . ..... . . . ........... . . ... . . . . .... . . .... ..... . .. .. . . . . . .. .... .... . . . . .. . ..... ...... . . .. ... . . . .. ....... .. ............. . . ....... . . . . .......... ................ .. . .. . .... . . . .... . . . . . ..
lowQualScore : 6 6 444 6 6 3 99 66 3 3 666666 3 3 999999999999999999999 55 000 55 5555 33 4 2 9 0 55 55 99999999 99999999999 9 44 3 00000 0 0 0 77777777777 6 4 444 6 6 6 6 5555 0 0 7777 33333 2 11 00 4 4 9 0 0 99 6666 2222 0 7 7 0 22 7 88888 000000 0 2 22 555 5 0 0 33 0000000 33 7777777777777 7 3 0000000 5 5 0 0 5555555555 0000000000000000 00 5 00 0 5555 0 0 0 5555 5 0 5 0 0 55
consensus : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTAG-ATCACAATTC-TTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTCG-T-TTTG-C---TTTTCGAGA--TATNTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTNATCA--TGC-TTTTTN-A--ATTA-----ATT-CTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
Reference ( family-1311 ) : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTAG-ATCACAATTC-TTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTCG-T-TTTG-C---TTTTCGAGA--TATNTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTNATCA--TGC-TTTTTN-A--ATTA-----ATT-CTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
gi|1 : GAATGACAC----TGGTG---A-T-ATATTAAT--CTG-TCAC------C-AAATTCCTTGAAGGA-AT-TTAACAAA--AAG--AAACAT---CTGGGTCAA-AGAACATAAG-ATTA--ATGT-CTT--GTCATAATT-----AACTC--T-T--TAGCCATAACTTTTTTATTCATCCCATT-T-T-TAAACCG----G---CAATTGAATTTTCATCA---AT-TTTTA-AATTGGCATACTGTATGGAATATCTCG-GATTTG-C---TTTTTGAGAGATATATCTGTATTA-C-ATCT-CTG--ATT----GAAACTACAACAAAACAACTAATACTCTTTA-GTCATCACATGC-TTTTTTTATTATTA-----AGT-CTGGTAAAATTAGGGTCTTTTTTAACAATAAAGTTCAATCATCAAATCT-AGAACTGGTGAGGTCAAAATTGTAACAACA-CTACAAA-AGAAAATGC---AC-ATGTCTACGTATGAATATGCAACAGTCAAATTGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTCAGATTAAAATTCCCGCATGGAAAGTTTATTGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTGAGCGAGAAAAGGGTACATTATTGGCAT
gi|10 : aggttgcTTC-TTTTAGCCAG--T------A--TC--TAT--T---CACAG-TTTTTCTTTCAT-----T-T-TATAAA--G----T---AAATTGGATTT-CACAA---AT-TTT-A-AAGTT-CACTCTCTA-GGACT-TCCC--T-CTTA-A---GTTGTGAGA--TATTCCTGT-TTA-CGATGC-CAG--AAT----TAAAATtccgtttcctatctaaaggcaattaccttctttcccagataagtgagatggataaagaagaaaatatgcaatgttataagatcctttttatagaattttagcgcaaactaagaaaataaagttggggttagatttgtagcattctttgcttctgagatgatgcagtataatacggaaattaaaatgcacaattctgtaattatggacataaatgttgtcaacaataacatatttggggcaacaaataatacagtcaatagttcataatatacaactagagagtaattgagaaaaagaaaatcatatgcatacgcagagcaacagacataattaaaaacaaaatcagtgcacttcaaaaataaatgaagaccacatattgaattcaatgatctcataactacctactattgtaagtcagtgactaacaactttcgtcttatataaggttaatatgcttgtacccaatttggcaggaggggggggtgacaaaatgttacagacacacggctgagcacttacaaagagttg
gi|11 : GGTG-AATGAGGCA-GTTGGTG---A-T-TT-AT--T--CTG-T-GC------C-AA-TTTCTTGAAT-A-AT-T------A--TAG--AAACAC---CTG--C--A-ATGACCCTAG-ATCACAATTC-TTC--GTAAT--CT-----C--TT--T-T--T---CATAG-TTTTTTTTTCAT-----T-T-T-Tg
gi|13 : AATTGAATTT-CATCA---AT-TTT-A-AACTG-CATACTTTA-GGAAT-TCTCA-T-TTTG-C---TTGTTGAGA--TATTTCTGT-TTA-CC
gi|14 : GTGGAATG-TACA-CCTGGTG---A-T-TT-TT--T--CTG-T-A-------C-AT-TTCCTTG-AT-A-AT-T------A--TAG--AAACAT---CTG--T--
gi|16 : AAGGTGGAATGATAAA-CCTGATG---ACT-TT-TT--T--CTG-T-AC------T-AA-TTCCTTGAAT-A-AT-T------ttta
gi|18 : tAAGGTGGAATGATGTA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTTG
gi|2 : tAAGGTCGAATGAGACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATAACAATAG-ACCATAATCC-TTT--GTAAT--TT-----A--TT--T-T--T---CAAAT-TTTTTTATTCAT-----T-T-T-TAAAC-G----A---AAATTGAATTT-CATCA---AT-TCT-A-AATTG-CATACTGTA-GGAAT-TTTCA-T-TTTG-C---TTTTTGAGA--TAATTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTCATCA--TGC-TTTTTT-A--ATTG-----ATT-CTGGTAAAA---GGGGCTTTTTTAACAATAAACTTCAATT-TC----TTGAAAACTGGTG--GTCAAATCTGTACCAACATCTACAAATAGAAAATG--CA--CATGTATGTTTATG-ATATGCAAAAGTCAAATAGAAA----------AAAAAAACAC----------------TTTT--AAAAATG-TT--AGTTAAG----AAATT-TCGCATGCAAGAGTTATCGTTCCTAAAATAGCTAG----CC-CAAT-CCA-CGTGGTTGTTTTTA-CAAGAAAGGGGTACAT--TTGGCATAT
gi|3 : GAAATGACACAGCTTGATG---T-TGTT-TC--C--CTG-T-AC------CTAA-TTC-------------------------G--AGAT-T---CTG--T--ATAGGACCTCAG-GTTACA---C-ATT--G--AT--TT-----G--TTCAT-T--T---CA--G-TTTTTCGTTCAT-----T-T-T-TATAT-----------------ATTT--ATAA---AT-TTT-A-AATTT-CACACTCTT-ATACT-TCT-----TTCA-C---TTTTGAAAA--TATC-CTGT-TTA-CCATTC-AAG--AAT----TAAATTGCAACAAAACAA----TCAT-TTTA-GTAATTA--TTTATTCTTA-A--ATT-------TT-TTTGC-AAA---GGGGTTTTTATAAGATCAAAC
gi|4 : aatcAAGGTGGAATGATACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AT------C-AA-TTCCCTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-CTAACAATAG-ATTACAATTC-TTT--GTCAT--TT-----A--TT--T-T--A---CATAA-TTTTTTATTCAT-----T-T-T-TTAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AACTA-CATACTGTA-GGAAT-TCTCG-T-TTTG-T---ATTTTGAAA--TATTTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTCATGA--TGC-TTTT
gi|5 : GGTGGAATGAGACA-C-TGGTG---A-T-TT-TTC-T--CTGGT-AA------A-AA-TTCTT-GAGT-A-TT-A------A--TAG--AAACAT----TG--T--A-ATAA--ATAGGATCACAATTCCTTT--GTCAT--TT-----A--TT--T-TACT---CATAA-TTTTTATTTCAT-----T-T-T-TTGAC-GCTCGGTTTAAA---GATTT-CATCGTCTGT-TT-----ATCG----AGTGT--GAAATATTTCGGT-TTTGTC---TGTCCGATA--CATGTA-GT-TTAGCTATATACTGTTAAT----GAAAA---AGCAAAAa
gi|6 : -G----A---AAATTGAACTT-CATCA---AT-TTT-T-GATTG-CACATTCCG-GAACT-TCTCA-T-TTTG-T---CTTTCGGGA--T----------------TAT-CTG--AATTATAGAAAACATAATAAAGCA-----TCTC-TTCAAGTAACCA--TAC-TTTTCA-A--ATTACATGTATTTCTAAAGAAA---GTGG-TTTTATAACATCAATCTTCAATG-TC----TTCAAAACTGGTG--GTTAAA--TG----------TATGAATGGAAAATACTCAACCATGCATA
gi|7 : T-TC--T--CGA-T-AC------C-AA-TTTCTCAGGT-ACATAT------ACTTAGGCACACAT---CTG--T--A-ATGGTATT----T-----TTC-TTT----CAT--TT-----A--TG------------AGAA-TGGTTTATTCAAA----T-T-T-TAAAG-A----T---AAACTGAATTT-CAT-----ATATTT-ACAATCG-TATGCT----------TCCTA-T-TTTG-TGTGTTTT---GA--TAAACCTGT-TTA-CCACAT-TTG--AAT----AAAAATACAAT--AGCAA----CA-T-TTTA-GTAACTA--TAC-TTtt
gi|8 : AGATGAAATGACACA-CCTGATGGGGA-T-TT-TT--C--TTG-T-ACATGTACC-AA-TTGCACATAT-A-TT-T------A--TCG--AAGCATAATCTG--T--T-ATGACTCCAG-AT----ATT----T--GTTAT--TTTCCCAG--TT--T-T--T---TTTTT-TTTTTTAATC-------T-T-T-TAAA--G----G---AATTTGAATGT-GATCA---AT-CTT-A-AATTG-CAAACTTTA-ga
gi|9 : cttAAGGTATAATAACACA-CCTGCTG---G-T-TC-TT--TTCCTG-T-AC------C-AA-TTCCTC---------------------AG--A----T---CTG--T--C-AGGAC-CCAG-AAGACAATTC-TTT--GTCTT--TC-----A--CT--A-T--T---CACAG-TTT---ATTCAT-----TATAT-TAA---T----G---AAATTGAATTT-CATAA---AT-TTT-A-TATTG-CATGCTCCA-GGACT-TCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGTATAATAAAATAAAATGCATTCTGTAGTAGAGCATAATGTTGTCAACAATGCATATGCAACATCAGTAAGATAAATATATCTAAAAGAATCTGAAGAAAAAGAAAATCATA
Unaligned ( gi|15 ): AAAGGGTACATTTGGCATATTCTTTCCTTTAAAGGCAATTACCTTCTTTCCCAGATA
Unaligned ( gi|17 ): TGGCATATTCTTTCCTCTAAAGGCAATGACATTCTTTCCCAAATAAGTGAAAAAT
Alignments
lowQualScore : 111111111111111111111 11111111 11111 22222222222 1111 11111 1111 1111 11111 333333 1 111 11 4444444 11 5555555555555 3333333 1 4444444444 5555555555555555 11 1 11 2222 1 2222 1 1 1 1 11
lowQualScore : 2 3 666 3 3 3 77 44 3 3 999999 3 3 444444444444444444444 55 777 55 6666 88 4 9 2 4 55 55 11111111 99999999999 3 55 0 44444 4 4 4 77777777777 3 1 666 3 3 3 3 5555 3 8 0000 00000 7 66 55 4 4 2 1 5 66 0000 4444 6 6 6 1 99 6 55555 222222 0 0 88 777 6 1 1 44 2222222 88 9999999999999 0 7 8888888 2 5 1 1 1111111111 9999999999999999 88 5 88 1 4444 5 1 1 3333 5 5 5 1 5 88
lowQualScore : . . ... . . . .. .. . . ...... . . ..................... .. ... .. .... .. . . . . .. .. ........ ........... . .. . ..... . . . ........... . . ... . . . . .... . . .... ..... . .. .. . . . . . .. .... .... . . . . .. . ..... ...... . . .. ... . . . .. ....... .. ............. . . ....... . . . . .......... ................ .. . .. . .... . . . .... . . . . . ..
lowQualScore : 6 6 444 6 6 3 99 66 3 3 666666 3 3 999999999999999999999 55 000 55 5555 33 4 2 9 0 55 55 99999999 99999999999 9 44 3 00000 0 0 0 77777777777 6 4 444 6 6 6 6 5555 0 0 7777 33333 2 11 00 4 4 9 0 0 99 6666 2222 0 7 7 0 22 7 88888 000000 0 2 22 555 5 0 0 33 0000000 33 7777777777777 7 3 0000000 5 5 0 0 5555555555 0000000000000000 00 5 00 0 5555 0 0 0 5555 5 0 5 0 0 55
consensus : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTAG-ATCACAATTC-TTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTCG-T-TTTG-C---TTTTCGAGA--TATNTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTNATCA--TGC-TTTTTN-A--ATTA-----ATT-CTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
Reference ( family-1311 ) : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTAG-ATCACAATTC-TTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTCG-T-TTTG-C---TTTTCGAGA--TATNTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTNATCA--TGC-TTTTTN-A--ATTA-----ATT-CTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
gi|1 : GAATGACAC----TGGTG---A-T-ATATTAAT--CTG-TCAC------C-AAATTCCTTGAAGGA-AT-TTAACAAA--AAG--AAACAT---CTGGGTCAA-AGAACATAAG-ATTA--ATGT-CTT--GTCATAATT-----AACTC--T-T--TAGCCATAACTTTTTTATTCATCCCATT-T-T-TAAACCG----G---CAATTGAATTTTCATCA---AT-TTTTA-AATTGGCATACTGTATGGAATATCTCG-GATTTG-C---TTTTTGAGAGATATATCTGTATTA-C-ATCT-CTG--ATT----GAAACTACAACAAAACAACTAATACTCTTTA-GTCATCACATGC-TTTTTTTATTATTA-----AGT-CTGGTAAAATTAGGGTCTTTTTTAACAATAAAGTTCAATCATCAAATCT-AGAACTGGTGAGGTCAAAATTGTAACAACA-CTACAAA-AGAAAATGC---AC-ATGTCTACGTATGAATATGCAACAGTCAAATTGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTCAGATTAAAATTCCCGCATGGAAAGTTTATTGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTGAGCGAGAAAAGGGTACATTATTGGCAT
gi|10 : aggttgcTTC-TTTTAGCCAG--T------A--TC--TAT--T---CACAG-TTTTTCTTTCAT-----T-T-TATAAA--G----T---AAATTGGATTT-CACAA---AT-TTT-A-AAGTT-CACTCTCTA-GGACT-TCCC--T-CTTA-A---GTTGTGAGA--TATTCCTGT-TTA-CGATGC-CAG--AAT----TAAAATtccgtttcctatctaaaggcaattaccttctttcccagataagtgagatggataaagaagaaaatatgcaatgttataagatcctttttatagaattttagcgcaaactaagaaaataaagttggggttagatttgtagcattctttgcttctgagatgatgcagtataatacggaaattaaaatgcacaattctgtaattatggacataaatgttgtcaacaataacatatttggggcaacaaataatacagtcaatagttcataatatacaactagagagtaattgagaaaaagaaaatcatatgcatacgcagagcaacagacataattaaaaacaaaatcagtgcacttcaaaaataaatgaagaccacatattgaattcaatgatctcataactacctactattgtaagtcagtgactaacaactttcgtcttatataaggttaatatgcttgtacccaatttggcaggaggggggggtgacaaaatgttacagacacacggctgagcacttacaaagagttg
gi|11 : GGTG-AATGAGGCA-GTTGGTG---A-T-TT-AT--T--CTG-T-GC------C-AA-TTTCTTGAAT-A-AT-T------A--TAG--AAACAC---CTG--C--A-ATGACCCTAG-ATCACAATTC-TTC--GTAAT--CT-----C--TT--T-T--T---CATAG-TTTTTTTTTCAT-----T-T-T-Tg
gi|13 : AATTGAATTT-CATCA---AT-TTT-A-AACTG-CATACTTTA-GGAAT-TCTCA-T-TTTG-C---TTGTTGAGA--TATTTCTGT-TTA-CC
gi|14 : GTGGAATG-TACA-CCTGGTG---A-T-TT-TT--T--CTG-T-A-------C-AT-TTCCTTG-AT-A-AT-T------A--TAG--AAACAT---CTG--T--
gi|16 : AAGGTGGAATGATAAA-CCTGATG---ACT-TT-TT--T--CTG-T-AC------T-AA-TTCCTTGAAT-A-AT-T------ttta
gi|18 : tAAGGTGGAATGATGTA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTTG
gi|2 : tAAGGTCGAATGAGACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATAACAATAG-ACCATAATCC-TTT--GTAAT--TT-----A--TT--T-T--T---CAAAT-TTTTTTATTCAT-----T-T-T-TAAAC-G----A---AAATTGAATTT-CATCA---AT-TCT-A-AATTG-CATACTGTA-GGAAT-TTTCA-T-TTTG-C---TTTTTGAGA--TAATTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTCATCA--TGC-TTTTTT-A--ATTG-----ATT-CTGGTAAAA---GGGGCTTTTTTAACAATAAACTTCAATT-TC----TTGAAAACTGGTG--GTCAAATCTGTACCAACATCTACAAATAGAAAATG--CA--CATGTATGTTTATG-ATATGCAAAAGTCAAATAGAAA----------AAAAAAACAC----------------TTTT--AAAAATG-TT--AGTTAAG----AAATT-TCGCATGCAAGAGTTATCGTTCCTAAAATAGCTAG----CC-CAAT-CCA-CGTGGTTGTTTTTA-CAAGAAAGGGGTACAT--TTGGCATAT
gi|3 : GAAATGACACAGCTTGATG---T-TGTT-TC--C--CTG-T-AC------CTAA-TTC-------------------------G--AGAT-T---CTG--T--ATAGGACCTCAG-GTTACA---C-ATT--G--AT--TT-----G--TTCAT-T--T---CA--G-TTTTTCGTTCAT-----T-T-T-TATAT-----------------ATTT--ATAA---AT-TTT-A-AATTT-CACACTCTT-ATACT-TCT-----TTCA-C---TTTTGAAAA--TATC-CTGT-TTA-CCATTC-AAG--AAT----TAAATTGCAACAAAACAA----TCAT-TTTA-GTAATTA--TTTATTCTTA-A--ATT-------TT-TTTGC-AAA---GGGGTTTTTATAAGATCAAAC
gi|4 : aatcAAGGTGGAATGATACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AT------C-AA-TTCCCTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-CTAACAATAG-ATTACAATTC-TTT--GTCAT--TT-----A--TT--T-T--A---CATAA-TTTTTTATTCAT-----T-T-T-TTAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AACTA-CATACTGTA-GGAAT-TCTCG-T-TTTG-T---ATTTTGAAA--TATTTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTCATGA--TGC-TTTT
gi|5 : GGTGGAATGAGACA-C-TGGTG---A-T-TT-TTC-T--CTGGT-AA------A-AA-TTCTT-GAGT-A-TT-A------A--TAG--AAACAT----TG--T--A-ATAA--ATAGGATCACAATTCCTTT--GTCAT--TT-----A--TT--T-TACT---CATAA-TTTTTATTTCAT-----T-T-T-TTGAC-GCTCGGTTTAAA---GATTT-CATCGTCTGT-TT-----ATCG----AGTGT--GAAATATTTCGGT-TTTGTC---TGTCCGATA--CATGTA-GT-TTAGCTATATACTGTTAAT----GAAAA---AGCAAAAa
gi|6 : -G----A---AAATTGAACTT-CATCA---AT-TTT-T-GATTG-CACATTCCG-GAACT-TCTCA-T-TTTG-T---CTTTCGGGA--T----------------TAT-CTG--AATTATAGAAAACATAATAAAGCA-----TCTC-TTCAAGTAACCA--TAC-TTTTCA-A--ATTACATGTATTTCTAAAGAAA---GTGG-TTTTATAACATCAATCTTCAATG-TC----TTCAAAACTGGTG--GTTAAA--TG----------TATGAATGGAAAATACTCAACCATGCATA
gi|7 : T-TC--T--CGA-T-AC------C-AA-TTTCTCAGGT-ACATAT------ACTTAGGCACACAT---CTG--T--A-ATGGTATT----T-----TTC-TTT----CAT--TT-----A--TG------------AGAA-TGGTTTATTCAAA----T-T-T-TAAAG-A----T---AAACTGAATTT-CAT-----ATATTT-ACAATCG-TATGCT----------TCCTA-T-TTTG-TGTGTTTT---GA--TAAACCTGT-TTA-CCACAT-TTG--AAT----AAAAATACAAT--AGCAA----CA-T-TTTA-GTAACTA--TAC-TTtt
gi|8 : AGATGAAATGACACA-CCTGATGGGGA-T-TT-TT--C--TTG-T-ACATGTACC-AA-TTGCACATAT-A-TT-T------A--TCG--AAGCATAATCTG--T--T-ATGACTCCAG-AT----ATT----T--GTTAT--TTTCCCAG--TT--T-T--T---TTTTT-TTTTTTAATC-------T-T-T-TAAA--G----G---AATTTGAATGT-GATCA---AT-CTT-A-AATTG-CAAACTTTA-ga
gi|9 : cttAAGGTATAATAACACA-CCTGCTG---G-T-TC-TT--TTCCTG-T-AC------C-AA-TTCCTC---------------------AG--A----T---CTG--T--C-AGGAC-CCAG-AAGACAATTC-TTT--GTCTT--TC-----A--CT--A-T--T---CACAG-TTT---ATTCAT-----TATAT-TAA---T----G---AAATTGAATTT-CATAA---AT-TTT-A-TATTG-CATGCTCCA-GGACT-TCT
blockSeqs : G G GGG C G . C TC G . ATGTAC T . CAGGTACATATACT GC AAT . AT CC G C C C TA . TCCCAG CATTT C G A A A A CGCTCGGTTT . A TCT A . C . CTA C A GGT TGTG T . TC . G G G A TT TATA . T . A C . A TA ACATGT T TA . C T A T TTG . TCTGTACCAACAT T CTCAACC T . A A . . . . . A . . C G . . . . T . .
blockSeqs : T . . . . . . . . . . . . TGAATAATTA . . . A AA . C T . . . A TTACT T G . . . . CGA . C . . . . . TTA A . AT TC T . TT . . C C . . . . A . . A . . AA G . AG . T A T G TTC . TG T CAC
blockSeqs : T . . . . . . . . . . . . TGAATAATTA . . . A CT . T C . . . C TATT A T . . . . CGG . C . . . . . GTA A . AT A T . TT . . C T . . . . T . . C . . AA . . C . . A T
blockSeqs : T . . . . . . . . . . . . TGAATAATTA . . . A AA . T C . . . A TTT T G . . . . GAT . A . . . . . CTT C . GT C G . TT . . C C . . . . T . . A . .
blockSeqs : G . . . . . . . . . . . . CATATATTTA . . . A AT . C C . . . G TTT T A . . . . GT . C . . . . . GTA A . AT C T . GT . . C A . . . . . . . A . .
blockSeqs : C . . . . . . . . . . . . TGATAATTA . . . A TC . G C . . . A TTA G A . . . . GG . C . . . . . CCG A . AT C C . AC . . T A . . .
blockSeqs : T . . . . . . . . . . . . GAGTATTAA . . . T A . . . . . . A TTT T A . . . . TG . C . . . . . TTA C . T T C . C . . C A . . .
blockSeqs : G . . . . . . . . . . . . C . . . C C . . . . . . A ATT C T . . . . T . C . . . . . CCA C . . T . . . . . .
blockSeqs : C . . . . . . . . . . . . . . . . . . . A . . G . . . . . A . . . . . GT . .
blockSeqs : C . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ** CGAATAATTA*********** ** A*** ** A******* TTT******** G* ***** CGG******** CTA* AT** ** **** **
originalCons : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTAG-ATCACAATTC-TTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G----G---AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTCG-T-TTTG-C---TTTTCGAGA--TATNTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTNATCA--TGC-TTTTTN-A--ATTA-----ATT-CTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
finalCons : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CTG-T-AC------C-AA-TTCCTCGAATAATTA-----------TAG--AAACAT---CTG--TA---ATGACANTAG-ATCACAATTC-TTT--GTCAT--TTA-------TTTTT--------CATAG-TTTTTTATTCAT-----T-T-T-TAAACGG--------AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTCTA-GGAAT-TCTCAT--TTTG-C---TTTTCGAGA--TATNTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTTA-GTNATCA--TGC-TTTTTN-A--ATTA-----ATT-CTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGTATAATAAAATAAAATGCATTCTGTAGTAGAGCATAATGTTGTCAACAATGCATATGCAACATCAGTAAGATAAATATATCTAAAAGAATCTGAAGAAAAAGAAAATCATA
Unaligned ( gi|15 ): AAAGGGTACATTTGGCATATTCTTTCCTTTAAAGGCAATTACCTTCTTTCCCAGATA
Unaligned ( gi|17 ): TGGCATATTCTTTCCTCTAAAGGCAATGACATTCTTTCCCAAATAAGTGAAAAAT
Alignments
lowQualScore : 11111111111 11111111 11111 22222222222 11111 1111 1111 11111 33333333 111 11 4444444 11 5555555555555 3333333 1 4444444444 5555555555555555 11 1 11 2222 1 2222 1 1 1 1 11
lowQualScore : 2 3 666 3 3 3 77 44 3 3 999999 3 3 555 3 33 33333333333 55 777 55 6666 55 4 9 2 4 55 55 11111111 99999999999 3 55 0 44444 4 4 4 66666666666 3 1 666 3 3 3 3 7777 3 8 88 4 00000 7 66 55 4 4 2 1 5 66 0000 4444 6 6 6 1 99 6 55555 99999999 0 88 777 6 1 1 44 2222222 88 9999999999999 0 7 8888888 2 5 1 1 1111111111 9999999999999999 88 5 88 1 4444 5 1 1 3333 5 5 5 1 5 88
lowQualScore : . . ... . . . .. .. . . ...... . . ... . .. ........... .. ... .. .... .. . . . . .. .. ........ ........... . .. . ..... . . . ........... . . ... . . . . .... . . .. . ..... . .. .. . . . . . .. .... .... . . . . .. . ..... ........ . .. ... . . . .. ....... .. ............. . . ....... . . . . .......... ................ .. . .. . .... . . . .... . . . . . ..
lowQualScore : 6 6 444 6 6 3 99 66 3 3 666666 3 3 222 6 77 11111111111 55 000 55 5555 77 4 2 9 0 55 55 99999999 99999999999 9 44 3 00000 0 0 0 22222222222 6 4 444 6 6 6 6 5555 0 0 66 4 33333 2 11 00 4 4 9 0 0 99 6666 2222 0 7 7 0 22 7 88888 00000000 2 22 555 5 0 0 33 0000000 33 7777777777777 7 3 0000000 5 5 0 0 5555555555 0000000000000000 00 5 00 0 5555 0 0 0 5555 5 0 5 0 0 55
consensus : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTA-GATCACAATT-CTTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G---G----AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTNTA-GGAAT-TCTC-GT-TTTG-C---TTTTCGAGA--TATNTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTNATCA--TGC-TTTTTN-A--ATTA-A-----TTCTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
Reference ( family-1311 ) : AAGGTGGAATGACACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTCGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATGACANTA-GATCACAATT-CTTT--GTCAT--TT-----A--TT--T-T--T---CATAG-TTTTTTATTCAT-----T-T-T-TAAAC-G---G----AAATTGAATTT-CATCA---AT-TTT-A-AATTG-CATACTCTA-GGAAT-TCTC-AT-TTTG-C---TTTTCGAGA--TATNTCTGT-TTA-CCATNT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTNATCA--TGC-TTTTTN-A--ATTA-A-----TTCTGGTAAAA---GGGGCTTTTNTAACANCAAACTTCAATN-TC----TT-AAAACTGGTG--GTCAAA-CTGTA-CAACA-CTACGAATAGAAAATGC-CAACCATGTATACGTATGAATATGCAANAGTCAAATNGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTNAGATTAAAATTCCCGCATGNAAGGNTTATCGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTNAGCGAGAAAGGGGTACATTATTGGCATAT
gi|1 : GAATGACAC----TGGTG---A-T-ATATTAAT--CT-GTCAC------C-AAATTCCTTGAAGGA-AT-TTAACAAA--AAG--AAACAT---CTGGGTCAA-AGAACATAA-GATTA--ATG-TCTT--GTCATAATT-----AACTC--T-T--TAGCCATAACTTTTTTATTCATCCCATT-T-T-TAAACCG---G----CAATTGAATTTTCATCA---AT-TTTTA-AATTGGCATACTGTATGGAATATCTC-GGATTTG-C---TTTTTGAGAGATATATCTGTATTA-C-ATCT-CTG--ATT----GAAACTACAACAAAACAACTAATACTCTTT-AGTCATCACATGC-TTTTTTTATTATTA-A-----GTCTGGTAAAATTAGGGTCTTTTTTAACAATAAAGTTCAATCATCAAATCT-AGAACTGGTGAGGTCAAAATTGTAACAACA-CTACAAA-AGAAAATGC---AC-ATGTCTACGTATGAATATGCAACAGTCAAATTGAAAAAAATTGAACAAAAAGACACAACATAAAATGAACTATTTTGAAAAGATGATTTGAGTTCAGATTAAAATTCCCGCATGGAAAGTTTATTGTTCCTAAAATAGCTAGGACTCCACAATCCCATCGTGGTTGTTTTGAGCGAGAAAAGGGTACATTATTGGCAT
gi|10 : aggttgcTT-CTTTTAGCCAG--T------A--TC--TAT--T---CACAG-TTTTTCTTTCAT-----T-T-TATAAA--G---T----AAATTGGATTT-CACAA---AT-TTT-A-AAGTT-CACTCTCTA-GGACT-TCCC--T-CTTA-A---GTTGTGAGA--TATTCCTGT-TTA-CGATGC-CAG--AAT----TAAAATtccgtttcctatctaaaggcaattaccttctttcccagataagtgagatggataaagaagaaaatatgcaatgttataagatcctttttatagaattttagcgcaaactaagaaaataaagttggggttagatttgtagcattctttgcttctgagatgatgcagtataatacggaaattaaaatgcacaattctgtaattatggacataaatgttgtcaacaataacatatttggggcaacaaataatacagtcaatagttcataatatacaactagagagtaattgagaaaaagaaaatcatatgcatacgcagagcaacagacataattaaaaacaaaatcagtgcacttcaaaaataaatgaagaccacatattgaattcaatgatctcataactacctactattgtaagtcagtgactaacaactttcgtcttatataaggttaatatgcttgtacccaatttggcaggaggggggggtgacaaaatgttacagacacacggctgagcacttacaaagagttg
gi|11 : GGTG-AATGAGGCA-GTTGGTG---A-T-TT-AT--T--CT-GT-GC------C-AA-TTTCTTGAAT-A-AT-T------A--TAG--AAACAC---CTG--C--A-ATGACCCTA-GATCACAATT-CTTC--GTAAT--CT-----C--TT--T-T--T---CATAG-TTTTTTTTTCAT-----T-T-T-Tg
gi|13 : AATTGAATTT-CATCA---AT-TTT-A-AACTG-CATACTTTA-GGAAT-TCTC-AT-TTTG-C---TTGTTGAGA--TATTTCTGT-TTA-CC
gi|14 : GTGGAATG-TACA-CCTGGTG---A-T-TT-TT--T--CT-GT-A-------C-AT-TTCCTTG-AT-A-AT-T------A--TAG--AAACAT---CTG--T--
gi|16 : AAGGTGGAATGATAAA-CCTGATG---ACT-TT-TT--T--CT-GT-AC------T-AA-TTCCTTGAAT-A-AT-T------ttta
gi|18 : tAAGGTGGAATGATGTA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTTG
gi|2 : tAAGGTCGAATGAGACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AC------C-AA-TTCCTTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-ATAACAATA-GACCATAATC-CTTT--GTAAT--TT-----A--TT--T-T--T---CAAAT-TTTTTTATTCAT-----T-T-T-TAAAC-G---A----AAATTGAATTT-CATCA---AT-TCT-A-AATTG-CATACTGTA-GGAAT-TTTC-AT-TTTG-C---TTTTTGAGA--TAATTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTCATCA--TGC-TTTTTT-A--ATTG-A-----TTCTGGTAAAA---GGGGCTTTTTTAACAATAAACTTCAATT-TC----TTGAAAACTGGTG--GTCAAATCTGTACCAACATCTACAAATAGAAAATG--CA--CATGTATGTTTATG-ATATGCAAAAGTCAAATAGAAA----------AAAAAAACAC----------------TTTT--AAAAATG-TT--AGTTAAG----AAATT-TCGCATGCAAGAGTTATCGTTCCTAAAATAGCTAG----CC-CAAT-CCA-CGTGGTTGTTTTTA-CAAGAAAGGGGTACAT--TTGGCATAT
gi|3 : GAAATGACACAGCTTGATG---T-TGTT-TC--C--CT-GT-AC------CTAA-TTC-------------------------G--AGAT-T---CTG--T--ATAGGACCTCA-GGTTACA----CATT--G--AT--TT-----G--TTCAT-T--T---CA--G-TTTTTCGTTCAT-----T-T-T-TA-----------------TATATTT--ATAA---AT-TTT-A-AATTT-CACACTCTT-ATACT-TC----T-TTCA-C---TTTTGAAAA--TATC-CTGT-TTA-CCATTC-AAG--AAT----TAAATTGCAACAAAACAA----TCAT-TTT-AGTAATTA--TTTATTCTTA-A--ATT--------TTTTTGC-AAA---GGGGTTTTTATAAGATCAAAC
gi|4 : aatcAAGGTGGAATGATACA-CCTGGTG---A-T-TT-TT--T--CT-GT-AT------C-AA-TTCCCTGAAT-A-AT-T------A--TAG--AAACAT---CTG--T--A-CTAACAATA-GATTACAATT-CTTT--GTCAT--TT-----A--TT--T-T--A---CATAA-TTTTTTATTCAT-----T-T-T-TTAAC-G---G----AAATTGAATTT-CATCA---AT-TTT-A-AACTA-CATACTGTA-GGAAT-TCTC-GT-TTTG-T---ATTTTGAAA--TATTTCTGT-TTA-CCATCT-CTG--AAT----GAAAATACAACAAAACAA----TATT-TTT-AGTCATGA--TGC-TTTT
gi|5 : GGTGGAATGAGACA--CTGGTG---A-T-TT-TTC-T--CTGGT-AA------A-AA-TT-CTTGAGT-A-TT-A------A--TAG--AAACAT----TG--T--A-ATA--AATAGGATCACAATTCCTTT--GTCAT--TT-----A--TT--T-TACT---CATAA-TTTTTATTTCAT-----T-T-T-TTGAC-GCTCGGTTTAAA---GATTT-CATCGTCTGT-TT-----ATCG----AGTGT--GAAATATTTCGGT-TTTGTC---TGTCCGATA--CATGTA-GT-TTAGCTATATACTGTTAAT----GAAAA---AGCAAAAa
gi|6 : -G---A----AAATTGAACTT-CATCA---AT-TTT-T-GATTG-CACATTCCG-GAACT-TCTC-AT-TTTG-T---CTTTCGGGA--T----------------TAT-CTG--AATTATAGAAAACATAATAAAGC-A----TCTC-TTCAAGTAACCA--TAC-TTTTCA-A--ATTACATGTATTTCTAAAGAAA---GTGG-TTTTATAACATCAATCTTCAATG-TC----TTCAAAACTGGTG--GTTAAA--TG----------TATGAATGGAAAATACTCAACCATGCATA
gi|7 : T-TC--T--CG-AT-AC------C-AA-TTTCTCAGGT-ACATAT------ACTTAGGCACACAT---CTG--T--A-ATGGTATT----T-----TT-CTTT----CAT--TT-----A--TG------------AGAA-TGGTTTATTCAAA----T-T-T-TAAAG-A---T----AAACTGAATTT-CAT-----ATATTT-ACAATCG-TATGCT----------TCCT-AT-TTTG-TGTGTTTT---GA--TAAACCTGT-TTA-CCACAT-TTG--AAT----AAAAATACAAT--AGCAA----CA-T-TTT-AGTAACTA--TAC-TTtt
gi|8 : AGATGAAATGACACA-CCTGATGGGGA-T-TT-TT--C--TT-GT-ACATGTACC-AA-TTGCACATAT-A-TT-T------A--TCG--AAGCATAATCTG--T--T-ATGACTCCA-GAT----ATT----T--GTTAT--TTTCCCAG--TT--T-T--T---TTTTT-TTTTTTAATC-------T-T-T-TAAA--G---G----AATTTGAATGT-GATCA---AT-CTT-A-AATTG-CAAACTTTA-ga
gi|9 : cttAAGGTATAATAACACA-CCTGCTG---G-T-TC-TT--TTCCT-GT-AC------C-AA-TTCCTC---------------------AG--A----T---CTG--T--C-AGGAC-CCA-GAAGACAATT-CTTT--GTCTT--TC-----A--CT--A-T--T---CACAG-TTT---ATTCAT-----TATAT-TAA---T---G----AAATTGAATTT-CATAA---AT-TTT-A-TATTG-CATGCTCCA-GGACT-TCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGTATAATAAAATAAAATGCATTCTGTAGTAGAGCATAATGTTGTCAACAATGCATATGCAACATCAGTAAGATAAATATATCTAAAAGAATCTGAAGAAAAAGAAAATCATA
Unaligned ( gi|15 ): AAAGGGTACATTTGGCATATTCTTTCCTTTAAAGGCAATTACCTTCTTTCCCAGATA
Unaligned ( gi|17 ): TGGCATATTCTTTCCTCTAAAGGCAATGACATTCTTTCCCAAATAAGTGAAAAAT