lowQualScore : 111111111111111111111111111111111
lowQualScore : 11111111111111 22222222222222222222 33333333333333333333333333333 11 111111 22 333333333333 1 1 11 11111111 22 2222 666666666666666666666666666666666 1111 111111111 11 11 111 111 11 2222222222 1 1 11 11 4 4 4 4
lowQualScore : 4 5 4 4 4 4 4 4 3 22222222222222 2 2 2 2 2 2 2 6666 11111111111111111111 2 66666666666666666666666666666 1 6 3 3 66 3 666666 3 55 555555555555 3 555 55 777 4 4 4 5 0 5 2 88 4 4 77 4 44444444 0 22 4 5555 4 3 1 4 33 4 4 4 4 5 333333333333333333333333333333333 0 3333 8888 222222222 9 5 66 66 5 5 5 00 3 5 3 6 5 777 5 8 999 66 4 000 3 5 5 55 888 3 1 4444444444 8 44 11 0 0 6 3 0 7 22 4 0 88 0 0 0 0
lowQualScore : . . . . . . . . . .............. . . . . . . . .... .................... . ............................. . . . . .. . ...... . .. ............ . ... .. ... . . . . . . . .. . . .. . ........ . .. . .... . . . . .. . . . . . ................................. . .... .... ......... . . .. .. . . . .. . . . . . ... . . ... .. . ... . . . .. ... . . .......... . .. .. . . . . . . .. . . .. . . . .
lowQualScore : 0 3 0 0 0 0 0 0 3 11111111111111 9 9 9 9 9 9 9 1111 88888888888888888888 9 99999999999999999999999999999 7 2 1 1 11 3 666666 6 77 777777777777 6 444 55 000 0 4 4 0 0 0 3 88 0 0 33 0 55555555 7 77 0 5555 0 9 3 0 99 0 4 4 8 0 444444444444444444444444444444444 9 1111 2222 222222222 0 0 44 11 9 0 0 00 8 0 4 2 0 444 0 8 555 66 2 000 4 1 0 22 888 2 0 0000000000 0 00 44 8 8 6 2 0 8 55 5 7 55 0 0 0 0
consensus : ATACAA-CGTCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-GC----T-----------NT--G----C-TACGAAGCGGA------GAAA-----A-CACAG------TATCGA-T-G-AG-TTTGAAATCGA-TTTGCTC--TTAA-AACATACACAAT-T-T---TGCAAA-AA-T-CATA--GTGC---A-TAGAGTGT-C-GTAGATAT-ATCTT-GATCAATCAA-ATTTGTCA-CCGAA-TTTCAGAAA-CCC-GTACT-T-A------ACTCAAAC-ACT-TC----AA-TCGCGTTTC-ACGAG-TAGG-T-CAACAACG-TTC-A--ANTT-AATGA-----------CATAAACTCA-C--TTTTT-C-GGTCATTT----A----GTCTC-TTCGCTACTTGTGTTTG--TTNA-A-CAG-AGCAGTGNCTATA-TNCTGTTAACG-TGAT--TT-TTNATG--NTTATATCGCCCTTTCCG-TCGCATTTCACA-TGCAAT---TTGCACAAAAAA--ATTC-TC-TAG-TTTGTAATGTGTCGCATGAGGGCTAGGA-TTNGGCGTCN-CGCGTGGACTATACTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGT-GTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGC-AGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTT-TTCACTATACAAAAAGGTGAA
Reference ( gi|2 ) : ATACAA-CGCCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-GC----T-----------CT--G----C-TACGAAGCGGC------GAAA-----A-CACAG------TATTGA-T-G-AG-ATTGAAATCGA-TTTGCTC--TTAA-ACTATACACAGT-TAT---TGCAAA-AA-T-CATA--GTGC---A-TAGAGTGT-C-GTAGATAT-ATCTT-GATCAATCAA-ATTTGTAA-ACGAA-TTTCAGAAA-CCA-GTACT-T-A------ACTCAAAG-ACT-TC----AA-TCGCGTTTC-ATAAG-TAGG-T-CAATAACG-TCC-A--ACTT-AATGGGTTTTT----CC-----CTCA-C--TTTTT-C-AGTCATTT----A----GTATC-TTTGCTACTTG-GTTTG--TTAA-A-CAA-AGCAGTGACTATA-TCCTGTTAACA-TGAT--AT-TTAATG--ATTATGTCGCCCTTTCTG-TCGTATTTCGCA-TGTCAT---TTGCACAAAAAA--ATTC-T--TAG-TTTGTAATGTGTCGCATGAGAGCTAGGA-TTAGGTGTCC-CGCGTGAACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCAC-TTTCCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
gi|1 : ATACAA-CGCCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG--C----T-----------CT--G----C-TACGAAGCGGC------GAAACA---A-CACAT------TATTGA-T-G-AG-ATTGAAATCGA-TTTGCTC--TTAA-ACTATACACAGT-TAT---TGCAAA-AA-T-CATA--GTGC---A-TAGAGTGT-CCGTAGATAT-ATCTTTGATCAATCAA-ATTTGTAA-ACGAA-TTTCAGAAA-CCA-GTACT-T-A------ACTCAAAG-ACT-TC----AA-TCGCGTTTC-ATAAG-TAGG-T-CAATAACG-TCC-A--ACTT-AATGGTGTTTT----CC-----CTCA-C--TTTTT-C-AGTCATTT----A----GTATC-TTTGCTACTTG-GTTTG--TTAA-A-CAA-AGCAGTGACTATA-TTCTGTTAACA-TGAT--AT-TT-ATG--ATTATGTCG-CCTTTCTG-TCGTATTTCGCA-TGTCAT---TTGCACAAAAAA--ATTC-T--TAGTTTTGTAATGTG-CGCATGAGAGCTAGGATTTAGGTGTCCGCGCGTGAACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGT-GTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGC-AGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTT-TTCACTATACAAAAAGGTGAA
gi|4 : ATACAA-CGTCA-CT-CCGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-GC----T-----------AT--GGGCAC-TACGAAGCGGA------GAAA-----A-CACAG------CATCGA-T-G-AG-TTTGAAATCAA-TTTGTTC--ATAA-A--ACACATATT-T-C---TACAAA-AA-C-CATA--GTGC---A-TAGAGTTT-C-TTAGATTT-GTCTT-GATCAATTAA-ATTTGTCA-CCGAA-TTTCAGAAA-TCC-GTACT-T-G------ACTCAAAC-ACT-TC----AA-TTGCGCTTC-ACGAG-TAGC-T-CATCAACG-T-T-A-----T-AA--------------------CCCA-G--TTTTTGC-GGTCATGT----A----GTCTA-TTTGCTACTTG-ATTTG--TTTA-A-CAT-AGCAGTATCTATA-TTCTGTGAACA-TGAT--TT-CTAATG--GTTATATCGCCCTTTCTG-TCACATTTCACA-TGCAAT---TTGCAC--AAAA--TTTCAC--TAG-TTTGTCATGTGTCGCATGAGGGCTAAGA-TTGGGTGTCG-TGTGTGGACTATACTCCg
gi|5 : cATACA--CGTCA-CAACTAG-C-GATA-GTC--TCAAT---------GGTGTTG-TTG-AC-A-C-A-GG-GC----T-----------CT--G----C-TACGAAGCGGA------GAAA-----AACACAG------TATCGA-TTG-AG-TTTGAA-TCAA-TTTGCTT--TTAT-AAAAAAAACGAT-T-T---TGCAAA-AA-T-CACA--GTGC---AGTAGAGTGTAT-GTAGATAT-ATCTT-GATCAATCAA-A-TTGTCA-CCGAA-TTTCAGAAA-CCC-GTACTCT-T------ATCCGAAC-ACT-TC----AA-TCG-ATTTC-ACGAC-TATG-T-TAA------------------AAT-------------------CT------TTTTC-C-GGTCATTT----A----GTCTC-TTTGCTACTT--GTTTG--TTGA-ACCAG-AGCATTGTCTATA-TCCT-TTAACA-TGATTAAA-CTAATG--ATTATATC-CCCTTTCTG-TCGCATTTCACATTGTAAT---TTGCACAAAAAA----TC-TC-TAG-TT--TAATGTGTCGC-TGAG-GCTAGG
gi|3 : acATAC---CGTC--CA-TCGG-C-GG-A-GTCGGTCACT---------GA---TG-T-GGAC-A-CGA-GGCGC----T-----------TGAGG----CATACGAAGCGGA------GAAA-----A-CACAA-------ATCGA-T-G-AG-TTTGAATTCAAATTTGTTCAATTAACAC----CACAAT-T-T---TACAAC-AA-C-CATATAGTGC---A-TAGAGT-T-C-TTAGATTT-GTCTTTGATCAATTAATATTTGTCATCCGAA-TTTCAGAAA-CCC-GTACT-TGG------ACTCAAA--ACT-TC----AATTTGCGCTTC-ACGAGCTAGGCT-CAACAAAG-TT-----AC-T-AA--------------------CCCA-C--TTTTT-CGGGTCATTT----AAGTCATATCTTTTGCTACTTG-GTTTGATTTAATT-CAT-AGCAGTTCGTATATTCTTGTGAACATTGAT--TTCTTAATGGTATTA--TCGCC--TTCTC-ACATCTTTCACA-TGCAATTTATTGCAC---ACA--ATTT-TCACAG-TTTTTCATGTGTCG-ATGAG-GCTA-AA-TCTGGTGTCG-TGTGTGGACATTACCTCAGGTTTTTACTG--TTATCAT
gi|9 : acATACGA-AGTCA-CA-CTAG-A-GG-A-GCCA-TCACT---------G----TG-T-G-GC-A-CGA-GG-GT----T-----------AT--G----C-TACGAAGTGGA------GAAA-----A-CACAG------TACCGG-T-G-AG-TATAAAATCAA-TTTTCTC--ACGA-A--ATACAATAT-T-T---TGAAAA-AAAT-CATA--GTGCCGCA-TAGAGTGT-C-GTAGATATTATCTT-AATCAATCAA-ATTTGTCA-CCGAA-TTTCACAAA-CCC-GTACT-T-ACATGTGACTCAAAC-A---TC----AA-------------GAG-TACG-T-CGTTGACA-TTG-ATGATTT-TATTGATTTTTATAACC-----C-AA-C--CTTTT-C-ATTCATTTTTAAA----ATCTC-TTTGCTACCTA-GTTTG--TT
gi|16 : cATACAA-CGTCA-CA-CAGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-GC----T-----------AT--G----G-TACGAAGCGGA------GAAAACAGTA-CACAGTACT--TATCGA-T-G-AG-TTTGAAATCAA-TTTGCTC--t
gi|13 : cATACAA-CGTCA-CG-ATAG-A-GA-A-GTTG-TCGAT---------G----TG-G-G-TC-A-CGA-GG-GC----TTGACGAGGGCCCG--G----C-TTCGAAGCGGA------GCAA-------------------ATCGC-T-G-AGTATC-AAATTGA-TTTTATC--ATAA-A--ATACACAA--TATTTCTTCAAA-AC-T-CATA--GTGC---A-a
gi|12 : ATACAG-CAACG-CA-TTCA-CAGG-A-AT-G-TTACT---------T----TG---G-AT-AGCAA-GG-GC----T-----------CC--A----C-T-CAAAGTGGA------GCAA-----A-CCCAG------TATTGG-C-G-AG-TACGTAATAAA-TTTTCTT--ATAA-AATGCACACAATCTCT---T--AAATAG-T-CATC--TTGG---G-TGGCGTGT-T-GT
gi|10 : atTACAAACGTCA-CA-CTGGGC-GG-A-GTCG-TCACTAGAAAAACAG----TGGT-G-AT-A-CGA-GG-AGATAAT-----------CT--GAA--C-TACGAAGAGACAAGGGAGAAA-----C-CACAAACCCACTATTGA-T-G-AG-TTTGAA
gi|15 : acatCAA-CGTCAACA-CAGG-C-GG-AAGTCT-GCTCT---------G----TG-T-G-GC-A-CGA-GG--C----T-----------CT--T----C-TACGAAGCGGA------GCAA-----A--ACAG------TATCGA-T-GCAG-TTTGAAAT-GA-TTTGC-----CAA---TACATACGAT-TTTC--TGCAAA-AA-T-CAtacaattatcataaaaaaataggcatataccatagt
gi|7 : tgcCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-GT----T-----------GT--G----C-TACGAAGCGG-----------------------------TATCAA-T-G-AG-TTTGAAATCGA-TTTG-----TTAA-AACATATACA------------AAC-GA-TTCATA--GTGC---A-TAGAGTGT-C-GTAGATAT-ATATT-GATCAATCAC-ATTTGTCA-ACGAA-TTTCAGAAA-CCT-GTACT-T-A------AATCAAAC-ACT-TCAATTAA-TCGTGTTTC-ATGAG-TAGG-T-CAACAACG-TTC-A--AATT-GATGA-----------CATAAACTCACC--TTTTT-T-GGCCATTT----A----GTCTC-TACGCTACTTGTTTTTT--TTTA-A-CAG-AGAAGTGACTATA-TACTGTTAACG-TGAT--TT-TTTATT--TTCATATCGCCTTTTCCA-TCGCATTTTACA-TGCAAT---TTGCACAAAA
gi|6 : aa-TCACT---------G----TG-T-G-AC-A-CGA-GG-GT----T-----------GT--G----C-TACGAAGCG---------------------CGT------TATCAAAT-G-AG-TTTGAAATCGA-TTTG-----TTAA-AACATATACAAC-GAT---T-----------CATA--GTGC---A-TAGAGTGT-C-GTAGATAT-ATATT-GATCAATCAC-ATTTGTCA-ACGAT-TTTCGAAAA-CCT-GTACT-T-A------AATCAAAACACT-TCAATTAA-TCGTGTTTC-ATGAG-TAGG-T-CAACAACGTTTC-A--AATTGAATGA-----------CATAAACTCA-CCTTTTTT-T-GGCCATTT----A----GTCTC-TACGCTACTTGTTTTTT--TTTA-A-CAG-AGAAGTGACTATA-TACTG-TAACG-TGAT--TT-TTTATT--TTCATATCGCCTTTTCCATTCGCATTTTACA-TGCAAT---TTGCACAAAAt
gi|11 : CACT---------G----TG-T-G-AC-A-TGA-GG-GC----T-----------AC--A----C-TACGAAGCAGA------AAAA-----A-CAAAG------TATT
gi|8 : T---------G----TG-T-G-ACCA-CGAAGG-GT----T-----------GT--G----C-TACGAAGCG------------------------------TATCAAAT-G-AG-TTTGAAATCGA-TT-G-----TTAA-AACATATACAAC-GAT---T-----------CATA--GTGC---A-TAGAGTGT-C-GTAGATAT-ATATT-GATCAATCAC-ATTTGTCA-ACGAATTTTCAG-AA-CCT-GTACT-T-A------AATCAAAACACT-TCAATTAA-TCGTGTTTC-ATGAG-TAGG-T-CAACAACG-TTCAA--AATT-GATGA-----------CATAAACTCACC--TTTTT-T-GGCCATTT----A----GTCTC-TCCGCTACTTGTTTTTT--TTTA-A-CAG-AGAAGTGACTATA-TACTG-TAACG-TGAT--TT-TTTATT--TTCATATCGCCTTTTCCA-TCGCATTTTACA-TGCAAT---TTGCACAAAAccaaattacgtcattttgaaactgcaagttaatttgagctaggttataaaaaatttcaaaatttgtgtgtacatttcttccacttttcattcatatcaaact
gi|18 : caTTGGTCA-CCAAA-TTTCAGAAACCCATATACT-T-C------ATTCAAAC-ACTGT--------TTGTG-TTC-ACAAG-TA
gi|17 : CGAA-TTTCAGAAC-TC---TACT---A------GCTCA--GCACT-TC----AA-TCGCGTTTCAACGAG-TAGG-TCCAAT
gi|14 : tttgtcaccTG--TAAA-A-TAAGAGCAGTATCTATA-TCTAAGTAACG-TGAT--TT-TTGATG--ATTAATTCGCCTTTTC---------------------------ACACAAAATATCACCC-T--TTC-GTTATA-TGTGTCGCATGAGGGCTAGGA-TTTGGCATCC-CGCGAGCACTATgttataaattgatgatttcagtccaggttgttctctttgct
Alignments
lowQualScore : 111111111 1111111111111111 111111111111111111 11111 222222222222 11111111 1111 55555555555555555555555555555555 11 1111 11 11 1111 111 11 1 2 2 2
lowQualScore : 3 3 3 3 3 3 3 3 000000000 8888 2 2 2 2 2 2 88888888 1 6666666666666666 2 444 444 0 0 999999999999999999 8 2 3 11111 1 1 111111111111 3 0 55 666 3 4 4 4 8 4 55 3 3 55 3 22222222 7 3 5555 3 7777 2 0 3 3 4 4 88888888888888888888888888888888 4 00 4 4 3333 777 4 0 88 4 1 11 1 1 4 4 4 66 4 5 1 1111 0 4 777 1 222 66 6 88 6 1 8 1 2 8 1 1 7 5 0 0 0
lowQualScore : . . . . . . . . ......... .... . . . . . . ........ . ................ . ... ... . . .................. . . . ..... . . ............ . . .. ... . . . . . . .. . . .. . ........ . . .... . .... . . . . . . ................................ . .. . . .... ... . . .. . . .. . . . . . .. . . . .... . . ... . ... .. . .. . . . . . . . . . . . . .
lowQualScore : 6 6 6 6 6 6 6 1 777777777 3333 7 7 7 7 7 7 11111111 0 9999999999999999 7 777 777 7 6 999999999999999999 6 9 1 88888 6 8 222222222222 3 8 00 444 6 0 0 4 9 4 00 6 6 00 6 44444444 3 6 5555 6 7777 6 4 6 6 0 0 00000000000000000000000000000000 4 66 4 4 9999 888 4 7 33 4 0 99 0 0 4 6 4 11 4 3 0 4444 1 4 888 9 777 00 7 33 7 0 0 0 8 0 0 4 3 5 0 0 0
consensus : ATACAA-CGTCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTNT-----------G----C-TACGAAG---C---GGAGAAA-----A-CACAG------TATCGA-TG-AGTTTGAAATCGA-TTTGCTC--TTAAAACATACACAA---TT-T--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTCA-CC-GAA-TTTCAGAAACCC--GTACT-T-A------ACTC-AAACACT-TC----AA-T----CGCGTTTC-ACGAG-TAGG-TCAACAACG-TT-C-A--A-NTT-AATGA-------CA--TAAACTCA-C--TTTTT-C-GGTCATTT----AGTC---TC-TTCGCTACTTGTGTTTG-TTTAA--CAGAGCAGTGNCTATATNC-TGTTAACG-TGATT--T-TTNATGNTTATATCGCCCTTTC-CG-TCGCATTTCACA-TGCAAT---TTGCACAAAAAA--ATTCTC-TAG-TTTGTAATGTGTCGCATGAGGGCTAGGA-TTNGGTGT-CGCGCGTGGACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
Reference ( family-1296 ) : ATACAA-CGTCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTNT-----------G----C-TACGAAG---C---GGAGAAA-----A-CACAG------TATCGA-TG-AGTTTGAAATCGA-TTTGCTC--TTAAAACATACACAA---TT-T--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTCA-CC-GAA-TTTCAGAAACCC--GTACT-T-A------ACTC-AAACACT-TC----AA-T----CGCGTTTC-ACGAG-TAGG-TCAACAACG-TT-C-A--A-NTT-AATGA-------CA--TAAACTCA-C--TTTTT-C-GGTCATTT----AGTC---TC-TTCGCTACTTGTGTTTG-TTNAA--CAGAGCAGTGNCTATATNC-TGTTAACG-TGATT--T-TTNATGNTTATATCGCCCTTTC-CG-TCGCATTTCACA-TGCAAT---TTGCACAAAAAA--ATTCTC-TAG-TTTGTAATGTGTCGCATGAGGGCTAGGA-TTNGGCGT-CNCGCGTGGACTATACTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGT-GTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGC-AGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTT-TTCACTATACAAAAAGGTGAA
gi|1 : ATACAA-CGCCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG--------CTCT-----------G----C-TACGAAG---C---GGCGAAACA---A-CACAT------TATTGA-TG-AGATTGAAATCGA-TTTGCTC--TTAAACTATACACAG---TTAT--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-CCGTAGATA-TATCTTTGATCAATCAA-ATTTGTAA-AC-GAA-TTTCAGAAACCA--GTACT-T-A------ACTC-AAAGACT-TC----AA-T----CGCGTTTC-ATAAG-TAGG-TCAATAACG-TC-C-A--A-CTT-AATGG-------TGTTTTCCCTCA-C--TTTTT-C-AGTCATTT----AGTA---TC-TTTGCTACTTG-GTTTG-TTAAA--CAAAGCAGTGACTATATTC-TGTTAACA-TGATA--T-TT-ATGATTATGTCG-CCTTTC-TG-TCGTATTTCGCA-TGTCAT---TTGCACAAAAAA--ATTCT--TAGTTTTGTAATGTG-CGCATGAGAGCTAGGATTTAGGTGTCCGCGCGTGAACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGT-GTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGC-AGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTT-TTCACTATACAAAAAGGTGAA
gi|10 : TACAAACGTCA-CA-CTGGGC-GG-A-GTCG-TCACTAGAAAAACAG----TGGT-G-AT-A-CGA-GG-AGATAATCTGA-----------A----C-TACGAAGAGACAAGGGAGAAA-----C-CACAAACCCACTATTGA-TG-AGTTTGAAg
gi|11 : acatCACT---------G----TG-T-G-AC-A-TGA-GG-G------CTAC-----------A----C-TACGAAG---C---AGAAAAA-----A-CAAAG------TATtacaattatcataaaaaaataggcatataccatagt
gi|12 : ATACAG-CAACG-CA-TTCA-CAGG-A-AT-G-TTACT---------T----TG---G-AT-AGCAA-GG-G------CTCC-----------A----C-T-CAAAG---T---GGAGCAA-----A-CCCAG------TATTGG-CG-AGTACGTAATAAA-TTTTCTT--ATAAAATGCACACAA---TC-T--CT-TAAATAGTCATC--TT---GGG-TGGCGTGT-T-GTtccaaattacgtcattttgaaactgcaagttaatttgagctaggttataaaaaatttcaaaatttgtgtgtacatttcttccacttttcattcatatcaaact
gi|13 : atATACAA-CGTCA-CG-ATAG-A-GA-A-GTTG-TCGAT---------G----TG-G-G-TC-A-CGA-GG-G------CTTGACGAGGGCCCGG----C-TTCGAAG---C---GGAGCAA-------------------ATCGC-TG-AGTATCAAATTGA-TTTTATC--ATAAA--ATACACAATATTT-C--TT-CAAA-ACTCATA--GT---GCA-
gi|14 : AGAGCAGTATCTATATCT-AAGTAACG-TGATT--T-TTGATGATTAATTCGCCTTTTC----------------------------ACACAAAATATCACCCTT-TCG-TT-ATA-TGTGTCGCATGAGGGCTAGGA-TTTGGCAT-CCCGCGAGCACTAT
gi|15 : tgtaaaataCAA-CGTCAACA-CAGG-C-GG-AAGTCT-GCTCT---------G----TG-T-G-GC-A-CGA-GG--------CTCT-----------T----C-TACGAAG---C---GGAGCAA-----A--ACAG------TATCGA-TGCAGTTTGAAAT-GA-TTTGCC-------AATACATACGA---TT-TTCTG-CAAA-AATCA
gi|16 : tgcATACAA-CGTCA-CA-CAGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTAT-----------G----G-TACGAAG---C---GGAGAAAACAGTA-CACAGTACT--TATCGA-TG-AGTTTGAAATCAA-TTTGCTC--
gi|17 : cTTTGTCA-CCCGAA-TTTCAGAA-CTC---TACT---A------GCTC-AG-CACT-TC----AA-T----CGCGTTTCAACGAG-TAGG-TC--CAATG-TTAT-A--A-ATT-GATGA-------a
gi|18 : TTGGTCA-CC-AAA-TTTCAGAAACCCATATACT-T-C------ATTC-AAACACTGT--------T----TGTG-TTC-ACAAG-TAtttcagtccaggttgttctctttgct
gi|2 : ATACAA-CGCCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTCT-----------G----C-TACGAAG---C---GGCGAAA-----A-CACAG------TATTGA-TG-AGATTGAAATCGA-TTTGCTC--TTAAACTATACACAG---TTAT--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTAA-AC-GAA-TTTCAGAAACCA--GTACT-T-A------ACTC-AAAGACT-TC----AA-T----CGCGTTTC-ATAAG-TAGG-TCAATAACG-TC-C-A--A-CTT-AATGGGTTTTTCC-------CTCA-C--TTTTT-C-AGTCATTT----AGTA---TC-TTTGCTACTTG-GTTTG-TTAAA--CAAAGCAGTGACTATATCC-TGTTAACA-TGATA--T-TTAATGATTATGTCGCCCTTTC-TG-TCGTATTTCGCA-TGTCAT---TTGCACAAAAAA--ATTCT--TAG-TTTGTAATGTGTCGCATGAGAGCTAGGA-TTAGGTGT-CCCGCGTGAACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCAC-TTTCCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
gi|3 : ATAC---CGTC--CA-TCGG-C-GG-A-GTCGGTCACT---------GA---TG-T-GGAC-A-CGA-GGCG------CTTGAG---------G----CATACGAAG---C---GGAGAAA-----A-CACAA-------ATCGA-TG-AGTTTGAATTCAAATTTGTTCAATTAACAC---CACAA---TT-T--TA-CAAC-AACCATATAGT---GCA-TAGAGT-T-C-TTAGATT-TGTCTTTGATCAATTAATATTTGTCATCC-GAA-TTTCAGAAACCC--GTACT-TGG------ACTC-AAA-ACT-TC----AATT----TGCGCTTC-ACGAGCTAGGCTCAACAAAG-TT------A-CT--------------------AACCCA-C--TTTTT-CGGGTCATTTA---AGTCATATCTTTTGCTACTTG-GTTTGATTTAATTCATAGCAGTTCGTATATTCTTGTGAACATTGATT--TCTTAATGGTATTATCGCCTTCTCACA-TC---TTTCACA-TGCAATTTATTGCAC---ACA--ATTTTCACAG-TTTTTCATGTGTCG-ATGA-GGCTA-AA-TCTGGTGT-CGTGTGTGGACATTACCTCAGGTTTTTACTG--TTATCAT
gi|4 : acATACAA-CGTCA-CT-CCGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTAT-----------GGGCAC-TACGAAG---C---GGAGAAA-----A-CACAG------CATCGA-TG-AGTTTGAAATCAA-TTTGTTC--ATAAAACA--CATAT---TT-C--TA-CAAA-AACCATA--GT---GCA-TAGAGTTT-C-TTAGATT-TGTCTT-GATCAATTAA-ATTTGTCA-CC-GAA-TTTCAGAAATCC--GTACT-T-G------ACTC-AAACACT-TC----AA-T----TGCGCTTC-ACGAG-TAGC-TCATCAACG-TT-------------------------A--TAA-CCCA-G--TTTTTGC-GGTCATGT----AGTC---TA-TTTGCTACTTG-ATTTG-TTTAA--CATAGCAGTATCTATATTC-TGTGAACA-TGATT--T-CTAATGGTTATATCGCCCTTTC-TG-TCACATTTCACA-TGCAAT---TTGCAC--AAAA--TTTCAC-TAG-TTTGTCATGTGTCGCATGAGGGCTAAGA-TTGGGTGT-CGTGTGTGGACTATACTCC
gi|5 : cATACA--CGTCA-CAACTAG-C-GATA-GTC--TCAAT---------GGTGTTG-TTG-AC-A-C-A-GG-G------CTCT-----------G----C-TACGAAG---C---GGAGAAA-----AACACAG------TATCGATTG-AGTTTG-AATCAA-TTTGCTT--TTATAAAAAAAACGA---TT-T--TG-CAAA-AATCACA--GT---GCAGTAGAGTGTAT-GTAGATA-TATCTT-GATCAATCAA-A-TTGTCA-CC-GAA-TTTCAGAAACCC--GTACTCT-T------ATCC-GAACACT-TC----AA-T----CG-ATTTC-ACGAC-TATG-TTAA--------------------AAT-----------------CT------TTTTC-C-GGTCATTT----AGTC---TC-TTTGCTACT--TGTTTG-TTGAAC-CAGAGCATTGTCTATATCC-T-TTAACA-TGATTAAA-CTAATGATTATATC-CCCTTTC-TG-TCGCATTTCACATTGTAAT---TTGCACAAAAAA----TCTC-TAG-TT--TAATGTGTCGC-TGA-GGCTAGG
gi|6 : ac-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------TTGT-----------G----C-TACGAAG---C---G---------------CGT------TATCAAATG-AGTTTGAAATCGA-TTTG-----TTAAAACATATACAA---C-----------G-ATTCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATATT-GATCAATCAC-ATTTGTCA-AC-GAT-TTTCGAAAACCT--GTACT-T-A------AATCAAAACACT-TCAATTAA-T----CGTGTTTC-ATGAG-TAGG-TCAACAACGTTT-C-A--A-ATTGAATGA-------CA--TAAACTCA-CCTTTTTT-T-GGCCATTT----AGTC---TC-TACGCTACTTGTTTTTT-TTTAA--CAGAGAAGTGACTATATAC-TG-TAACG-TGATT--T-TTTATTTTCATATCGCCTTTTC-CATTCGCATTTTACA-TGCAAT---TTGCACAAAA
gi|7 : CG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------TTGT-----------G----C-TACGAAG---C---GG-----------------------TATCAA-TG-AGTTTGAAATCGA-TTTG-----TTAAAACATATACAA-------------ACG-ATTCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATATT-GATCAATCAC-ATTTGTCA-AC-GAA-TTTCAGAAACCT--GTACT-T-A------AATC-AAACACT-TC----AA-TTAATCGTGTTTC-ATGAG-TAGG-TCAACAACG-TT-C-A--A-ATT-GATGA-------CA--TAAACTCA-CC-TTTTT-T-GGCCATTT----AGTC---TC-TACGCTACTTGTTTTTT-TTTAA--CAGAGAAGTGACTATATAC-TGTTAACG-TGATT--T-TTTATTTTCATATCGCCTTTTC-CA-TCGCATTTTACA-TGCAAT---TTGCACAAAA
gi|8 : aaT---------G----TG-T-G-ACCA-CGAAGG-G------TTGT-----------G----C-TACGAAG---C---G------------------------TATCAAATG-AGTTTGAAATCGA-TT-G-----TTAAAACATATACAA---C-----------G-ATTCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATATT-GATCAATCAC-ATTTGTCA-AC-GAATTTTCAG-AACCT--GTACT-T-A------AATCAAAACACT-TCAATTAA-T----CGTGTTTC-ATGAG-TAGG-TCAACAACG-TT-CAA--A-ATT-GATGA-------CA--TAAACTCACC--TTTTT-T-GGCCATTT----AGTC---TC-TCCGCTACTTGTTTTTT-TTTAA--CAGAGAAGTGACTATATAC-TG-TAACG-TGATT--T-TTTATTTTCATATCGCCTTTTC-CA-TCGCATTTTACA-TGCAAT---TTGCACAAAAt
gi|9 : caATACGA-AGTCA-CA-CTAG-A-GG-A-GCCA-TCACT---------G----TG-T-G-GC-A-CGA-GG-G------TTAT-----------G----C-TACGAAG---T---GGAGAAA-----A-CACAG------TACCGG-TG-AGTATAAAATCAA-TTT--TC--TCACGAAATACAATA---TT-T--TGAAAAA-AATCATA--GTGCCGCA-TAGAGTGT-C-GTAGATATTATCTT-AATCAATCAA-ATTTGTCA-CC-GAA-TTTCACAAACCC--GTACT-T-ACATGTGACTC-AAACA---TC----AA-----------------GAG-TACG-TCGTTGACA-TT-G-ATGATTTT-ATTGATTTT---TA--TAACCCAA-C--CTTTT-C-ATTCATTTTTAAAATC---TC-TTTGCTACCTA-GTTTG-TT
Alignments
lowQualScore : 111111111 1111111111111111 111111111111111111 11111 222222222222 11111111 1111 55555555555555555555555555555555 11 1111 11 11 1111 111 11 1 1 1 1
lowQualScore : 3 3 3 3 3 3 3 3 000000000 8888 2 2 2 2 2 2 88888888 1 6666666666666666 2 444 444 0 0 999999999999999999 8 2 3 11111 1 1 111111111111 3 0 55 666 3 4 4 4 8 4 55 3 3 55 3 22222222 7 3 5555 3 7777 2 0 3 3 4 4 88888888888888888888888888888888 4 00 4 4 3333 777 4 0 88 4 11 1 1 4 4 4 66 4 5 1 1111 0 4 777 1 222 66 6 88 6 1 8 1 8 1 7 5 5 5 5
lowQualScore : . . . . . . . . ......... .... . . . . . . ........ . ................ . ... ... . . .................. . . . ..... . . ............ . . .. ... . . . . . . .. . . .. . ........ . . .... . .... . . . . . . ................................ . .. . . .... ... . . .. . .. . . . . . .. . . . .... . . ... . ... .. . .. . . . . . . . . . . .
lowQualScore : 6 6 6 6 6 6 6 1 777777777 3333 7 7 7 7 7 7 11111111 0 9999999999999999 7 777 777 7 6 999999999999999999 6 9 1 88888 6 8 222222222222 3 8 00 444 6 0 0 4 9 4 00 6 6 00 6 44444444 3 6 5555 6 7777 6 4 6 6 0 0 00000000000000000000000000000000 4 66 4 4 9999 888 4 7 33 4 99 0 0 4 6 4 11 4 3 0 4444 1 4 888 9 777 00 7 33 7 0 0 0 0 4 3 5 0 5 0
consensus : ATACAA-CGTCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTNT-----------G----C-TACGAAG---C---GGAGAAA-----A-CACAG------TATCGA-TG-AGTTTGAAATCGA-TTTGCTC--TTAAAACATACACAA---TT-T--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTCA-CC-GAA-TTTCAGAAACCC--GTACT-T-A------ACTC-AAACACT-TC----AA-T----CGCGTTTC-ACGAG-TAGG-TCAACAACG-TT-C-A--A-NTT-AATGA-------CA--TAAACTCA-C--TTTTT-C-GGTCATTT----AGTC---TC-TTCGCTACTTGTGTTTG-TTTAA--CAGAGCAGTGNCTATATNC-TGTTAACG-TGATT--T-TTNATGNTTATATCGCCCTTTC-CG-TCGCATTTCACA-TGCAAT---TTGCACAAAAAA--ATTCTC-TAG-TTTGTAATGTGTCGCATGAGGGCTAGGA-TTNGGTGT-CGCGCGTGGACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
Reference ( family-1296 ) : ATACAA-CGTCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTNT-----------G----C-TACGAAG---C---GGAGAAA-----A-CACAG------TATCGA-TG-AGTTTGAAATCGA-TTTGCTC--TTAAAACATACACAA---TT-T--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTCA-CC-GAA-TTTCAGAAACCC--GTACT-T-A------ACTC-AAACACT-TC----AA-T----CGCGTTTC-ACGAG-TAGG-TCAACAACG-TT-C-A--A-NTT-AATGA-------CA--TAAACTCA-C--TTTTT-C-GGTCATTT----AGTC---TC-TTCGCTACTTGTGTTTG-TTTAA--CAGAGCAGTGNCTATATNC-TGTTAACG-TGATT--T-TTNATGNTTATATCGCCCTTTC-CG-TCGCATTTCACA-TGCAAT---TTGCACAAAAAA--ATTCTC-TAG-TTTGTAATGTGTCGCATGAGGGCTAGGA-TTNGGTGT-CGCGCGTGGACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
gi|1 : ATACAA-CGCCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG--------CTCT-----------G----C-TACGAAG---C---GGCGAAACA---A-CACAT------TATTGA-TG-AGATTGAAATCGA-TTTGCTC--TTAAACTATACACAG---TTAT--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-CCGTAGATA-TATCTTTGATCAATCAA-ATTTGTAA-AC-GAA-TTTCAGAAACCA--GTACT-T-A------ACTC-AAAGACT-TC----AA-T----CGCGTTTC-ATAAG-TAGG-TCAATAACG-TC-C-A--A-CTT-AATGG-------TGTTTTCCCTCA-C--TTTTT-C-AGTCATTT----AGTA---TC-TTTGCTACTTG-GTTTG-TTAAA--CAAAGCAGTGACTATATTC-TGTTAACA-TGATA--T-TT-ATGATTATGTCG-CCTTTC-TG-TCGTATTTCGCA-TGTCAT---TTGCACAAAAAA--ATTCT--TAGTTTTGTAATGTG-CGCATGAGAGCTAGGATTTAGGTGTCCGCGCGTGAACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGT-GTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGC-AGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTT-TTCACTATACAAAAAGGTGAA
gi|10 : TACAAACGTCA-CA-CTGGGC-GG-A-GTCG-TCACTAGAAAAACAG----TGGT-G-AT-A-CGA-GG-AGATAATCTGA-----------A----C-TACGAAGAGACAAGGGAGAAA-----C-CACAAACCCACTATTGA-TG-AGTTTGAAg
gi|11 : acatCACT---------G----TG-T-G-AC-A-TGA-GG-G------CTAC-----------A----C-TACGAAG---C---AGAAAAA-----A-CAAAG------TATtacaattatcataaaaaaataggcatataccatagt
gi|12 : ATACAG-CAACG-CA-TTCA-CAGG-A-AT-G-TTACT---------T----TG---G-AT-AGCAA-GG-G------CTCC-----------A----C-T-CAAAG---T---GGAGCAA-----A-CCCAG------TATTGG-CG-AGTACGTAATAAA-TTTTCTT--ATAAAATGCACACAA---TC-T--CT-TAAATAGTCATC--TT---GGG-TGGCGTGT-T-GTtccaaattacgtcattttgaaactgcaagttaatttgagctaggttataaaaaatttcaaaatttgtgtgtacatttcttccacttttcattcatatcaaact
gi|13 : atATACAA-CGTCA-CG-ATAG-A-GA-A-GTTG-TCGAT---------G----TG-G-G-TC-A-CGA-GG-G------CTTGACGAGGGCCCGG----C-TTCGAAG---C---GGAGCAA-------------------ATCGC-TG-AGTATCAAATTGA-TTTTATC--ATAAA--ATACACAATATTT-C--TT-CAAA-ACTCATA--GT---GCA-
gi|14 : AGAGCAGTATCTATATCT-AAGTAACG-TGATT--T-TTGATGATTAATTCGCCTTTTC----------------------------ACACAAAATATCACCCTT-TCG-TT-ATA-TGTGTCGCATGAGGGCTAGGA-TTTGGCAT-CCCGCGAGCACTAT
gi|15 : tgtaaaataCAA-CGTCAACA-CAGG-C-GG-AAGTCT-GCTCT---------G----TG-T-G-GC-A-CGA-GG--------CTCT-----------T----C-TACGAAG---C---GGAGCAA-----A--ACAG------TATCGA-TGCAGTTTGAAAT-GA-TTTGCC-------AATACATACGA---TT-TTCTG-CAAA-AATCA
gi|16 : tgcATACAA-CGTCA-CA-CAGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTAT-----------G----G-TACGAAG---C---GGAGAAAACAGTA-CACAGTACT--TATCGA-TG-AGTTTGAAATCAA-TTTGCTC--
gi|17 : cTTTGTCA-CCCGAA-TTTCAGAA-CTC---TACT---A------GCTC-AG-CACT-TC----AA-T----CGCGTTTCAACGAG-TAGG-TC--CAATG-TTAT-A--A-ATT-GATGA-------a
gi|18 : TTGGTCA-CC-AAA-TTTCAGAAACCCATATACT-T-C------ATTC-AAACACTGT--------T----TGTG-TTC-ACAAG-TAtttcagtccaggttgttctctttgct
gi|2 : ATACAA-CGCCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTCT-----------G----C-TACGAAG---C---GGCGAAA-----A-CACAG------TATTGA-TG-AGATTGAAATCGA-TTTGCTC--TTAAACTATACACAG---TTAT--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTAA-AC-GAA-TTTCAGAAACCA--GTACT-T-A------ACTC-AAAGACT-TC----AA-T----CGCGTTTC-ATAAG-TAGG-TCAATAACG-TC-C-A--A-CTT-AATGGGTTTTTCC-------CTCA-C--TTTTT-C-AGTCATTT----AGTA---TC-TTTGCTACTTG-GTTTG-TTAAA--CAAAGCAGTGACTATATCC-TGTTAACA-TGATA--T-TTAATGATTATGTCGCCCTTTC-TG-TCGTATTTCGCA-TGTCAT---TTGCACAAAAAA--ATTCT--TAG-TTTGTAATGTGTCGCATGAGAGCTAGGA-TTAGGTGT-CCCGCGTGAACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTT-CCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
gi|3 : ATAC---CGTC--CA-TCGG-C-GG-A-GTCGGTCACT---------GA---TG-T-GGAC-A-CGA-GGCG------CTTGAG---------G----CATACGAAG---C---GGAGAAA-----A-CACAA-------ATCGA-TG-AGTTTGAATTCAAATTTGTTCAATTAACAC---CACAA---TT-T--TA-CAAC-AACCATATAGT---GCA-TAGAGT-T-C-TTAGATT-TGTCTTTGATCAATTAATATTTGTCATCC-GAA-TTTCAGAAACCC--GTACT-TGG------ACTC-AAA-ACT-TC----AATT----TGCGCTTC-ACGAGCTAGGCTCAACAAAG-TT------A-CT--------------------AACCCA-C--TTTTT-CGGGTCATTTA---AGTCATATCTTTTGCTACTTG-GTTTGATTTAATTCATAGCAGTTCGTATATTCTTGTGAACATTGATT--TCTTAATGGTATTATCGCCTTCTCACA-TC---TTTCACA-TGCAATTTATTGCAC---ACA--ATTTTCACAG-TTTTTCATGTGTCG-ATGA-GGCTA-AA-TCTGGTGT-CGTGTGTGGACATTACCTCAGGTTTTTACTG--TTATCAT
gi|4 : acATACAA-CGTCA-CT-CCGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTAT-----------GGGCAC-TACGAAG---C---GGAGAAA-----A-CACAG------CATCGA-TG-AGTTTGAAATCAA-TTTGTTC--ATAAAACA--CATAT---TT-C--TA-CAAA-AACCATA--GT---GCA-TAGAGTTT-C-TTAGATT-TGTCTT-GATCAATTAA-ATTTGTCA-CC-GAA-TTTCAGAAATCC--GTACT-T-G------ACTC-AAACACT-TC----AA-T----TGCGCTTC-ACGAG-TAGC-TCATCAACG-TT-------------------------A--TAA-CCCA-G--TTTTTGC-GGTCATGT----AGTC---TA-TTTGCTACTTG-ATTTG-TTTAA--CATAGCAGTATCTATATTC-TGTGAACA-TGATT--T-CTAATGGTTATATCGCCCTTTC-TG-TCACATTTCACA-TGCAAT---TTGCAC--AAAA--TTTCAC-TAG-TTTGTCATGTGTCGCATGAGGGCTAAGA-TTGGGTGT-CGTGTGTGGACTATACTCC
gi|5 : cATACA--CGTCA-CAACTAG-C-GATA-GTC--TCAAT---------GGTGTTG-TTG-AC-A-C-A-GG-G------CTCT-----------G----C-TACGAAG---C---GGAGAAA-----AACACAG------TATCGATTG-AGTTTG-AATCAA-TTTGCTT--TTATAAAAAAAACGA---TT-T--TG-CAAA-AATCACA--GT---GCAGTAGAGTGTAT-GTAGATA-TATCTT-GATCAATCAA-A-TTGTCA-CC-GAA-TTTCAGAAACCC--GTACTCT-T------ATCC-GAACACT-TC----AA-T----CG-ATTTC-ACGAC-TATG-TTAA--------------------AAT-----------------CT------TTTTC-C-GGTCATTT----AGTC---TC-TTTGCTACT--TGTTTG-TTGAAC-CAGAGCATTGTCTATATCC-T-TTAACA-TGATTAAA-CTAATGATTATATC-CCCTTTC-TG-TCGCATTTCACATTGTAAT---TTGCACAAAAAA----TCTC-TAG-TT--TAATGTGTCGC-TGA-GGCTAGG
gi|6 : ac-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------TTGT-----------G----C-TACGAAG---C---G---------------CGT------TATCAAATG-AGTTTGAAATCGA-TTTG-----TTAAAACATATACAA---C-----------G-ATTCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATATT-GATCAATCAC-ATTTGTCA-AC-GAT-TTTCGAAAACCT--GTACT-T-A------AATCAAAACACT-TCAATTAA-T----CGTGTTTC-ATGAG-TAGG-TCAACAACGTTT-C-A--A-ATTGAATGA-------CA--TAAACTCA-CCTTTTTT-T-GGCCATTT----AGTC---TC-TACGCTACTTGTTTTTT-TTTAA--CAGAGAAGTGACTATATAC-TG-TAACG-TGATT--T-TTTATTTTCATATCGCCTTTTC-CATTCGCATTTTACA-TGCAAT---TTGCACAAAA
gi|7 : CG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------TTGT-----------G----C-TACGAAG---C---GG-----------------------TATCAA-TG-AGTTTGAAATCGA-TTTG-----TTAAAACATATACAA-------------ACG-ATTCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATATT-GATCAATCAC-ATTTGTCA-AC-GAA-TTTCAGAAACCT--GTACT-T-A------AATC-AAACACT-TC----AA-TTAATCGTGTTTC-ATGAG-TAGG-TCAACAACG-TT-C-A--A-ATT-GATGA-------CA--TAAACTCA-CC-TTTTT-T-GGCCATTT----AGTC---TC-TACGCTACTTGTTTTTT-TTTAA--CAGAGAAGTGACTATATAC-TGTTAACG-TGATT--T-TTTATTTTCATATCGCCTTTTC-CA-TCGCATTTTACA-TGCAAT---TTGCACAAAA
gi|8 : aaT---------G----TG-T-G-ACCA-CGAAGG-G------TTGT-----------G----C-TACGAAG---C---G------------------------TATCAAATG-AGTTTGAAATCGA-TT-G-----TTAAAACATATACAA---C-----------G-ATTCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATATT-GATCAATCAC-ATTTGTCA-AC-GAATTTTCAG-AACCT--GTACT-T-A------AATCAAAACACT-TCAATTAA-T----CGTGTTTC-ATGAG-TAGG-TCAACAACG-TT-CAA--A-ATT-GATGA-------CA--TAAACTCACC--TTTTT-T-GGCCATTT----AGTC---TC-TCCGCTACTTGTTTTTT-TTTAA--CAGAGAAGTGACTATATAC-TG-TAACG-TGATT--T-TTTATTTTCATATCGCCTTTTC-CA-TCGCATTTTACA-TGCAAT---TTGCACAAAAt
gi|9 : caATACGA-AGTCA-CA-CTAG-A-GG-A-GCCA-TCACT---------G----TG-T-G-GC-A-CGA-GG-G------TTAT-----------G----C-TACGAAG---T---GGAGAAA-----A-CACAG------TACCGG-TG-AGTATAAAATCAA-TTT--TC--TCACGAAATACAATA---TT-T--TGAAAAA-AATCATA--GTGCCGCA-TAGAGTGT-C-GTAGATATTATCTT-AATCAATCAA-ATTTGTCA-CC-GAA-TTTCACAAACCC--GTACT-T-ACATGTGACTC-AAACA---TC----AA-----------------GAG-TACG-TCGTTGACA-TT-G-ATGATTTT-ATTGATTTT---TA--TAACCCAA-C--CTTTT-C-ATTCATTTTTAAAATC---TC-TTTGCTACCTA-GTTTG-TTT
blockSeqs : A A A G A T A G AGAAAAACA GTGT G T G C G A AGATAAT G ACGAGGGCCCGG A AGA AAG ACAGTACACAGTACT T C A TTCAA T C TATTTCTT T TA GCC G A . T T T TC C T AT C ACATGTG A G AATT T TAAT C A C C T GATGATTTTATTGATTTTTATAAC C CT G G TTAA ATA T TG A TT T C T G T AA C G A ACA T TTA A TCA CA . TG G G . T . C T . G A C
blockSeqs : . . . . . . . . . A . . . . . . CG A GGGCA . . . CCACAAACCCAC A . . CTT T T TTTTCTG . . . . . . . . . C . . . . GG A . AATT . . T . . . . CAACTTAATGGGTTTTTCC . C . . A . . TT . C A C . T . . . A A CAT . . A A T . TT G G . A . A .
blockSeqs : . . . . . . . . . . . . . . . . G C AGG . . . AACACAG A . . ATC T C TTATTG . . . . . . . . . C . . . . A . . . . . C . . . . CAAATTGAATGACATAAA . . . . . . . TT . . C T . T . . . A G TG . . A A C . TG G A . T . G
blockSeqs : . . . . . . . . . . . . . . . . G T A . . . ACAAAG . . . CTC C T TTTTGA . . . . . . . . . A . . . . C . . . . . C . . . . CAAAATTGATGACATAAA . . . . . . . TT . . T T . T . . . A G TG . . A T C . A . G . G . G
blockSeqs : . . . . . . . . . . . . . . . . G C A . . . ACCCAG . . . CTC C A TCTCT . . . . . . . . . C . . . . A . . . . . C . . . . CAAATTGATGACATAAA . . . . . . . G . . T C . T . . . A A TG . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . G A A . . . ACACAG . . . TTC A T TTTTA . . . . . . . . . C . . . . G . . . . . T . . . . ACTAA . . . . . . . G . . A A . T . . . T T CA . . A
blockSeqs : . . . . . . . . . . . . . . . . G C T . . . ACACAA . . . CTT C T TTCTA . . . . . . . . . A . . . . T . . . . . T . . . . ATAA . . . . . . . A . . A A . . . . . T T CA . . .
blockSeqs : . . . . . . . . . . . . . . . . G T G . . . ACACAG . . . CC C T TTTTG . . . . . . . . . A . . . . A . . . . . T . . . . AAT . . . . . . . G . A A . . . . . T T . . . .
blockSeqs : . . . . . . . . . . . . . . . . G A G . . . ACACAG . . . TC C T C . . . . . . A . . . . A . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . G C G . . . AACAG . . . . A . C . . . . C . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . G G G . . . CGT . . . . . . . .
blockSeqs : . . . . . . . . . G G G . . . . . . . .
blockSeqs : . . . . . . . . G G G . . . . . .
blockSeqs : . . . . . . . . . A G . . . .
blockSeqCons : G******* ACACAG************ TTTTG******* CAAATTGATGCATAAA**************** TN C*
originalCons : ATACAA-CGTCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTNT-----------G----C-TACGAAG---C---GGAGAAA-----A-CACAG------TATCGA-TG-AGTTTGAAATCGA-TTTGCTC--TTAAAACATACACAA---TT-T--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTCA-CC-GAA-TTTCAGAAACCC--GTACT-T-A------ACTC-AAACACT-TC----AA-T----CGCGTTTC-ACGAG-TAGG-TCAACAACG-TT-C-A--A-NTT-AATGA-------CA--TAAACTCA-C--TTTTT-C-GGTCATTT----AGTC---TC-TTCGCTACTTGTGTTTG-TTTAA--CAGAGCAGTGNCTATATNC-TGTTAACG-TGATT--T-TTNATGNTTATATCGCCCTTTC-CG-TCGCATTTCACA-TGCAAT---TTGCACAAAAAA--ATTCTC-TAG-TTTGTAATGTGTCGCATGAGGGCTAGGA-TTNGGTGT-CGCGCGTGGACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
finalCons : ATACAA-CGTCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GGG-------CTNT-----------G----C-TACGAAG---C---GGAGAAAACACAG------------TATCGA-TG-AGTTTGAAATCGA-TTTGCTC--TTAAAACATACACAATTTTG-------CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTCA-CC-GAA-TTTCAGAAACCC--GTACT-T-A------ACTC-AAACACT-TC----AA-T----CGCGTTTC-ACGAG-TAGG-TCAACAACG-TTCAAATTGATGCATAAA----------------CTCA-C--TTTTT-C-GGTCATTT----AGTC---TC-TTCGCTACTTGTNTTTG-TTTAA--CAGAGCAGTGNCTATATNC-TGTTAACG-TGATT--T-TTNATGNTTATATCGCCCTTTC-CG-TCGCATTTCACA-TGCAAT---TTGCACAAAAAA--ATTCTC-TAG-TTTGTAATGTGTCGCATGAGGGCTAGGA-TTNGGTGT-CGCGCGTGGACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
Alignments
lowQualScore : 111111111 1111111111111111 111111111111111111 11111 222222222222 11111111 1111 6666666666666666666666666666666666 11 1111 22 11 1111 111 11 1 1 1 1
lowQualScore : 3 3 3 3 3 3 3 3 000000000 8888 2 2 2 2 2 2 88888888 1 6666666666666666 2 444 444 0 0 999999999999999999 8 2 3 11111 1 1 111111111111 3 0 55 666 3 4 4 4 8 4 55 3 3 55 3 22222222 7 3 5555 3 7777 2 0 3 3 4 1 4 9999999999999999999999999999999999 4 4 00 4 4 3333 777 4 0 66 4 11 1 1 4 4 4 66 4 5 1 4 1111 0 4 777 1 222 66 77 7 6 1 99 8 1 7 5 5 5 5
lowQualScore : . . . . . . . . ......... .... . . . . . . ........ . ................ . ... ... . . .................. . . . ..... . . ............ . . .. ... . . . . . . .. . . .. . ........ . . .... . .... . . . . . . . .................................. . . .. . . .... ... . . .. . .. . . . . . .. . . . . .... . . ... . ... .. .. . . . .. . . . . . . .
lowQualScore : 6 6 6 6 6 6 6 1 777777777 3333 7 7 7 7 7 7 11111111 0 9999999999999999 7 777 777 7 6 999999999999999999 6 9 1 88888 6 8 222222222222 3 8 00 444 6 0 0 4 9 4 00 6 6 00 6 44444444 3 6 5555 6 7777 6 4 6 6 0 0 0 7777777777777777777777777777777777 4 4 66 4 4 9999 888 4 7 22 4 99 0 0 4 6 4 11 4 3 0 4 4444 1 4 888 9 777 00 77 2 7 0 00 0 4 3 5 0 5 0
consensus : ATACAA-CGTCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTNT-----------G----C-TACGAAG---C---GGAGAAA-----A-CACAG------TATCGA-TG-AGTTTGAAATCGA-TTTGCTC--TTAAAACATACACAA---TT-T--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTCA-CC-GAA-TTTCAGAAACCC--GTACT-T-A------ACTC-AAACACT-TC----AA-T----CGCGTTTC-ACGAG-TAGG-TCAACAACG-TT-C-A--A----ATTG-ATG--------C-TA---AACTC-A-C--TTTTT-C-GGTCATTT----AGTC---TC-TTCGCTACTTG-GTTTG-TTTAA--CAGAGCAGTGNCTATATNC-TGTTAACG-TGATT--T-TTNATGNTTATATCGCCTTTTC-CG-TCGCATTTCACA-TGCAAT---TTGCACAAAAAA--ATTCTC-TAGTTT-GTAATGTGTCGCATGAGGGCTAGGATTT-GGTGTC-GCGCGTGGACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
Reference ( family-1296 ) : ATACAA-CGTCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTNT-----------G----C-TACGAAG---C---GGAGAAA-----A-CACAG------TATCGA-TG-AGTTTGAAATCGA-TTTGCTC--TTAAAACATACACAA---TT-T--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTCA-CC-GAA-TTTCAGAAACCC--GTACT-T-A------ACTC-AAACACT-TC----AA-T----CGCGTTTC-ACGAG-TAGG-TCAACAACG-TT-C-A--A----ATTG-ATG--------CATA---AACTC-A-C--TTTTT-C-GGTCATTT----AGTC---TC-TTCGCTACTTGTNTTTG-TTTAA--CAGAGCAGTGNCTATATNC-TGTTAACG-TGATT--T-TTNATGNTTATATCGCCCTTTC-CG-TCGCATTTCACA-TGCAAT---TTGCACAAAAAA--ATTCTC-TAGTTT-GTAATGTGTCGCATGAGGGCTAGGATTN-GGTGTC-GCGCGTGGACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
gi|1 : ATACAA-CGCCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG--------CTCT-----------G----C-TACGAAG---C---GGCGAAACA---A-CACAT------TATTGA-TG-AGATTGAAATCGA-TTTGCTC--TTAAACTATACACAG---TTAT--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-CCGTAGATA-TATCTTTGATCAATCAA-ATTTGTAA-AC-GAA-TTTCAGAAACCA--GTACT-T-A------ACTC-AAAGACT-TC----AA-T----CGCGTTTC-ATAAG-TAGG-TCAATAACG-TC-C-A--A----CTTA-ATGGTGTTTTCC--------CTC-A-C--TTTTT-C-AGTCATTT----AGTA---TC-TTTGCTACTTG-GTTTG-TTAAA--CAAAGCAGTGACTATATTC-TGTTAACA-TGATA--T-TT-ATGATTATGTCGCC-TTTC-TG-TCGTATTTCGCA-TGTCAT---TTGCACAAAAAA--ATTCT--TAGTTTTGTAATGTG-CGCATGAGAGCTAGGATTTAGGTGTCCGCGCGTGAACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTTTCCAGTGTGACGTTGTATGT-GTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGC-AGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTT-TTCACTATACAAAAAGGTGAA
gi|10 : TACAAACGTCA-CA-CTGGGC-GG-A-GTCG-TCACTAGAAAAACAG----TGGT-G-AT-A-CGA-GG-AGATAATCTGA-----------A----C-TACGAAGAGACAAGGGAGAAA-----C-CACAAACCCACTATTGA-TG-AGTTTGAAg
gi|11 : acatCACT---------G----TG-T-G-AC-A-TGA-GG-G------CTAC-----------A----C-TACGAAG---C---AGAAAAA-----A-CAAAG------TATtacaattatcataaaaaaataggcatataccatagt
gi|12 : ATACAG-CAACG-CA-TTCA-CAGG-A-AT-G-TTACT---------T----TG---G-AT-AGCAA-GG-G------CTCC-----------A----C-T-CAAAG---T---GGAGCAA-----A-CCCAG------TATTGG-CG-AGTACGTAATAAA-TTTTCTT--ATAAAATGCACACAA---TC-T--CT-TAAATAGTCATC--TT---GGG-TGGCGTGT-T-GTtccaaattacgtcattttgaaactgcaagttaatttgagctaggttataaaaaatttcaaaatttgtgtgtacatttcttccacttttcattcatatcaaact
gi|13 : atATACAA-CGTCA-CG-ATAG-A-GA-A-GTTG-TCGAT---------G----TG-G-G-TC-A-CGA-GG-G------CTTGACGAGGGCCCGG----C-TTCGAAG---C---GGAGCAA-------------------ATCGC-TG-AGTATCAAATTGA-TTTTATC--ATAAA--ATACACAATATTT-C--TT-CAAA-ACTCATA--GT---GCA-
gi|14 : AGAGCAGTATCTATATCT-AAGTAACG-TGATT--T-TTGATGATTAATTCGCCTTTTC----------------------------ACACAAAATATCACCCTT-TCG-TT-AT-ATGTGTCGCATGAGGGCTAGGATTT-GGCATC-CCGCGAGCACTAT
gi|15 : tgtaaaataCAA-CGTCAACA-CAGG-C-GG-AAGTCT-GCTCT---------G----TG-T-G-GC-A-CGA-GG--------CTCT-----------T----C-TACGAAG---C---GGAGCAA-----A--ACAG------TATCGA-TGCAGTTTGAAAT-GA-TTTGCC-------AATACATACGA---TT-TTCTG-CAAA-AATCA
gi|16 : tgcATACAA-CGTCA-CA-CAGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTAT-----------G----G-TACGAAG---C---GGAGAAAACAGTA-CACAGTACT--TATCGA-TG-AGTTTGAAATCAA-TTTGCTC--
gi|17 : cTTTGTCA-CCCGAA-TTTCAGAA-CTC---TACT---A------GCTC-AG-CACT-TC----AA-T----CGCGTTTCAACGAG-TAGG-TC--CAATG-TTAT-A--A----ATTG-ATG--------a
gi|18 : TTGGTCA-CC-AAA-TTTCAGAAACCCATATACT-T-C------ATTC-AAACACTGT--------T----TGTG-TTC-ACAAG-TAatttcagtccaggttgttctctttgct
gi|2 : ATACAA-CGCCA-CA-CTGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTCT-----------G----C-TACGAAG---C---GGCGAAA-----A-CACAG------TATTGA-TG-AGATTGAAATCGA-TTTGCTC--TTAAACTATACACAG---TTAT--TG-CAAA-AATCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATCTT-GATCAATCAA-ATTTGTAA-AC-GAA-TTTCAGAAACCA--GTACT-T-A------ACTC-AAAGACT-TC----AA-T----CGCGTTTC-ATAAG-TAGG-TCAATAACG-TC-C-A--A----CTTA-ATG--------GGTTTTTCCCTC-A-C--TTTTT-C-AGTCATTT----AGTA---TC-TTTGCTACTTG-GTTTG-TTAAA--CAAAGCAGTGACTATATCC-TGTTAACA-TGATA--T-TTAATGATTATGTCGCCCTTTC-TG-TCGTATTTCGCA-TGTCAT---TTGCACAAAAAA--ATTCT--TAGTTT-GTAATGTGTCGCATGAGAGCTAGGATTA-GGTGTC-CCGCGTGAACTATGCTCCAGGTTTCTACTGTATTGTCATGATAAAATATTTTTTTCTTTGTGCGTCCAAAACGTGTATAGTATCATGATCCTTTTGTCAGTTTTCTTTTCACTTT-CCAGTGTGACGTTGTATGTGGTGACTAGGGAAGCTTATTTTGAAAACTACACAGCTCTCAGGCGTTGCAAGGCAATATATTTTATTTTCACAAATAAAGTTTGACAATGATATCAATTCAATGGTGTTTCTTCACTATACAAAAAGGTGAA
gi|3 : ATAC---CGTC--CA-TCGG-C-GG-A-GTCGGTCACT---------GA---TG-T-GGAC-A-CGA-GGCG------CTTGAG---------G----CATACGAAG---C---GGAGAAA-----A-CACAA-------ATCGA-TG-AGTTTGAATTCAAATTTGTTCAATTAACAC---CACAA---TT-T--TA-CAAC-AACCATATAGT---GCA-TAGAGT-T-C-TTAGATT-TGTCTTTGATCAATTAATATTTGTCATCC-GAA-TTTCAGAAACCC--GTACT-TGG------ACTC-AAA-ACT-TC----AATT----TGCGCTTC-ACGAGCTAGGCTCAACAAAG-TT-----------ACT--------------------AACCC-A-C--TTTTT-CGGGTCATTTA---AGTCATATCTTTTGCTACTTG-GTTTGATTTAATTCATAGCAGTTCGTATATTCTTGTGAACATTGATT--TCTTAATGGTATTATCGCCTTCTCACA-TC---TTTCACA-TGCAATTTATTGCAC---ACA--ATTTTCACAGTTT-TTCATGTGTCG-ATGA-GGCTA-AATCT-GGTGTC-GTGTGTGGACATTACCTCAGGTTTTTACTG--TTATCAT
gi|4 : acATACAA-CGTCA-CT-CCGG-C-GG-A-GTCG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------CTAT-----------GGGCAC-TACGAAG---C---GGAGAAA-----A-CACAG------CATCGA-TG-AGTTTGAAATCAA-TTTGTTC--ATAAAACA--CATAT---TT-C--TA-CAAA-AACCATA--GT---GCA-TAGAGTTT-C-TTAGATT-TGTCTT-GATCAATTAA-ATTTGTCA-CC-GAA-TTTCAGAAATCC--GTACT-T-G------ACTC-AAACACT-TC----AA-T----TGCGCTTC-ACGAG-TAGC-TCATCAACG-TT-----------AT---------------------AACCC-A-G--TTTTTGC-GGTCATGT----AGTC---TA-TTTGCTACTTG-ATTTG-TTTAA--CATAGCAGTATCTATATTC-TGTGAACA-TGATT--T-CTAATGGTTATATCGCCCTTTC-TG-TCACATTTCACA-TGCAAT---TTGCAC--AAAA--TTTCAC-TAGTTT-GTCATGTGTCGCATGAGGGCTAAGATTG-GGTGTC-GTGTGTGGACTATACTCC
gi|5 : cATACA--CGTCA-CAACTAG-C-GATA-GTC--TCAAT---------GGTGTTG-TTG-AC-A-C-A-GG-G------CTCT-----------G----C-TACGAAG---C---GGAGAAA-----AACACAG------TATCGATTG-AGTTTG-AATCAA-TTTGCTT--TTATAAAAAAAACGA---TT-T--TG-CAAA-AATCACA--GT---GCAGTAGAGTGTAT-GTAGATA-TATCTT-GATCAATCAA-A-TTGTCA-CC-GAA-TTTCAGAAACCC--GTACTCT-T------ATCC-GAACACT-TC----AA-T----CG-ATTTC-ACGAC-T----------ATG-TT-A-A--A----AT-----------------------CT-------TTTTC-C-GGTCATTT----AGTC---TC-TTTGCTACTTG--TTTG-TTGAAC-CAGAGCATTGTCTATATCC-T-TTAACA-TGATTAAA-CTAATGATTATATC-CCCTTTC-TG-TCGCATTTCACATTGTAAT---TTGCACAAAAAA----TCTC-TAGTT---TAATGTGTCGC-TGA-GGCTAGG
gi|6 : ac-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------TTGT-----------G----C-TACGAAG---C---G---------------CGT------TATCAAATG-AGTTTGAAATCGA-TTTG-----TTAAAACATATACAA---C-----------G-ATTCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATATT-GATCAATCAC-ATTTGTCA-AC-GAT-TTTCGAAAACCT--GTACT-T-A------AATCAAAACACT-TCAATTAA-T----CGTGTTTC-ATGAG-TAGG-TCAACAACGTTT-C-A--A----ATTGAATGA-------CATA---AACTC-A-CCTTTTTT-T-GGCCATTT----AGTC---TC-TACGCTACTTGTTTTTT-TTTAA--CAGAGAAGTGACTATATAC-TG-TAACG-TGATT--T-TTTATTTTCATATCGCCTTTTC-CATTCGCATTTTACA-TGCAAT---TTGCACAAAA
gi|7 : CG-TCACT---------G----TG-T-G-AC-A-CGA-GG-G------TTGT-----------G----C-TACGAAG---C---GG-----------------------TATCAA-TG-AGTTTGAAATCGA-TTTG-----TTAAAACATATACAA-------------ACG-ATTCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATATT-GATCAATCAC-ATTTGTCA-AC-GAA-TTTCAGAAACCT--GTACT-T-A------AATC-AAACACT-TC----AA-TTAATCGTGTTTC-ATGAG-TAGG-TCAACAACG-TT-C-A--A----ATTG-ATGA-------CATA---AACTC-A-CC-TTTTT-T-GGCCATTT----AGTC---TC-TACGCTACTTGTTTTTT-TTTAA--CAGAGAAGTGACTATATAC-TGTTAACG-TGATT--T-TTTATTTTCATATCGCCTTTTC-CA-TCGCATTTTACA-TGCAAT---TTGCACAAAA
gi|8 : aaT---------G----TG-T-G-ACCA-CGAAGG-G------TTGT-----------G----C-TACGAAG---C---G------------------------TATCAAATG-AGTTTGAAATCGA-TT-G-----TTAAAACATATACAA---C-----------G-ATTCATA--GT---GCA-TAGAGTGT-C-GTAGATA-TATATT-GATCAATCAC-ATTTGTCA-AC-GAATTTTCAG-AACCT--GTACT-T-A------AATCAAAACACT-TCAATTAA-T----CGTGTTTC-ATGAG-TAGG-TCAACAACG-TT-CAA--A----ATTG-ATGA-------CATA---AACTC-ACC--TTTTT-T-GGCCATTT----AGTC---TC-TCCGCTACTTGTTTTTT-TTTAA--CAGAGAAGTGACTATATAC-TG-TAACG-TGATT--T-TTTATTTTCATATCGCCTTTTC-CA-TCGCATTTTACA-TGCAAT---TTGCACAAAAt
gi|9 : caATACGA-AGTCA-CA-CTAG-A-GG-A-GCCA-TCACT---------G----TG-T-G-GC-A-CGA-GG-G------TTAT-----------G----C-TACGAAG---T---GGAGAAA-----A-CACAG------TACCGG-TG-AGTATAAAATCAA-TTT--TC--TCACGAAATACAATA---TT-T--TGAAAAA-AATCATA--GTGCCGCA-TAGAGTGT-C-GTAGATATTATCTT-AATCAATCAA-ATTTGTCA-CC-GAA-TTTCACAAACCC--GTACT-T-ACATGTGACTC-AAACA---TC----AA-----------------GAG-TACG-TCGTTGACA-TT-G-ATGATTTTATTG-ATT--------TTTAT--AACCCAA-C--CTTTT-C-ATTCATTTTTAAAATC---TC-TTTGCTACCTA-GTTTG-TTT