lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 222222 111 222 5555555555555555555555555555 99999999999999 111 6666666666666666666666666666666666666666666666666666 11111 11111111 2222 1111 22222222222222222 11111 1 333333333333333333333333333 3333333 2222222 1 333333333333 1111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 11 5555555555555555555555555555555555555555555555 11111 11111 33333333333333333333333333333333333333333333333333333333333333333333 5555555555555555555555555555555 1 77777777777777777777777777777777777777777777777777 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222 11 33333 222222 2222
lowQualScore : 6 6 333333 222 333 5555555555555555555555555555 4 1 5 66 66 77 44444444444444 0 0 55 2 5 1 3 666 5 1 66 8888888888888888888888888888888888888888888888888888 22222 88888888 777 4444 7 0000 22222222222222222 777 1 3 4 22222 6 6 777777777777777777777777777 3333333 1111111 2 444444444444 7777 8 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333 1 2 11 0000000000000000000000000000000000000000000000 3 77 0 8 99 44444 33333 1 77 5 0 5 1 1 22222222222222222222222222222222222222222222222222222222222222222222 888 99 44 3333333333333333333333333333333 5 3 1 1 44444444444444444444444444444444444444444444444444 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 6 3 44 8888 6 1 88 4 99999 2 000000 6 4 1111
lowQualScore : . . ...... ... ... ............................ . . . .. .. .. .............. . . .. . . . . ... . . .. .................................................... ..... ........ ... .... . .... ................. ... . . . ..... . . ........................... ....... ....... . ............ .... . ................................................................................................................................................................................................................................................................................. ... . . .. .............................................. . .. . . .. ..... ..... . .. . . . . . .................................................................... ... .. .. ............................... . . . . .................................................. . .................................................................................................................................................................................... . . . .. .... . . .. . ..... . ...... . . ....
lowQualScore : 0 0 777777 000 111 0000000000000000000000000000 0 4 0 99 11 88 44444444444444 1 1 22 2 0 4 4 222 4 4 44 4444444444444444444444444444444444444444444444444444 55555 11111111 888 2222 4 6666 66666666666666666 444 0 6 2 99999 7 0 111111111111111111111111111 3333333 7777777 0 222222222222 2222 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555 0 8 55 5555555555555555555555555555555555555555555555 9 99 7 6 66 33333 44444 7 99 7 7 7 7 7 88888888888888888888888888888888888888888888888888888888888888888888 333 22 22 0000000000000000000000000000000 0 5 0 0 88888888888888888888888888888888888888888888888888 8 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 7 7 77 3333 0 0 33 0 55555 5 000000 0 0 0000
consensus : ACAAAAGAAACTGTG-TA-NACT-A-AAAG-TTAAATAAAA-ATAT-A--A-AA--G--TA-TT-CTTTGAT-CG--CTCTTTAT--TCTTAAAGGCATA-C------TAGT-TTAATATACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATATCG-CGTTCGATTCGCCTT---CG-AT-G--CCA----ACG-----N-TN---TT-----CT--------GGAGTTTCGAGCN--TAAGCGACAC----GTGGT------TAGTAATC-GATTAGA--ATTTCTTGCATTCATTGACAATATT---C-A-TG-ATTGA-----A----AAN------G-ATNGTTTGCGTGTT-------ATT-------GGGATGC------------TGGAAGN---T-GGG------------ATG--TC------------GACA-A-----G-GCAA-----TTTG----GAGTTCATA---T-TAACGCT-T-TAAATGCTTTAT--AG-AGACGATATCAGCAAAC--T--GG--CACCGTTCGGGACCN-C-CCACGATCAG---GACGCCN-A----CGTGTAACGT-----C--ACGTCGGCAAG--AT----ACGTATATA-----A---TAT--TTTGCGT-------AAN--C-----NA-TTCGANTCGGNT-TCTTT-GACCGCTAGAAGCACCCCTNNGCATCGA-GGATAAG--TC--CT-----CGTAANG-----AACAGATTGCGAGAG--GCCAACATC-CG-----TCCT---CGACGTCCTGCTATC--CGTCC-TGTTCT-GCTCTN--------G--------CGTT--NCG-------AN---------GTTG--G-----CGN---G----GTGTAGGAG--GCATCGTCGTT--TC--AATAA-AAGAGATTGGG-GGAAGTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-GCAGC--------AGCGACGGTCGTGTTCGG-GNTT-ACCC-ATT-GTGCCGGAGAACGTTAC----------A-TG-TAC---T-T---ATTCAGC-CCGCCA---------------ATTTGGCGGAGGGAGCGTTATNGTTTGNGATGGAATT--ACAACN---CATGNANGGACCCTTT--------GTGATG--------GGCA---ATTTAACCGACGTACGCT-CC-TG----A--AGATTGTAC-TCAGNACGNCATTCCAT----TCATTCACAACAACCAGCG--TANCGTCACATTNTGCAGCACGGCAACGCNCGAACACGCACT
Reference ( gi|1 ) : ATAAAAGAAACTGTT-TA-AACT-A-AAAC-CTAAATGAAA-ACA-----A-AA--A--CA-TC-CTCTGAT-CG--CTCTTTAT--TCTTAAAGGCATA-CT-TAT-TAGT-TTAATATACTAAACGCGTGTTT-GAGTACC--CAGTTTGTTAGATATTC-TGTTTAATTCGCCTT---CG-AT-G--TCA----ACG-----A-TG---TT-----CT--------GGAATTTCAAGTG--TAAGCGATAC----GTGGT------TGGCAATCTGATTAGA--ATTTTTTGCATTCATTGATAGTATT---C-A-TG-ATTGA-----A----AAG------G-ATAGTCTGTGTGTT-------ATT-------GGGATGC------------TGGAAGC---T-GGG------------ATA--T-------------GACA-A-----G-ACAA-----TTTG----GCGTTCATA---G-TAACACTTTTTAAATGCTTCATTTCG-AGCCGTTTTCATTAAAC--T--GA--CACCGTTCTGGAACT-T-CAACAATCCG---GACGCCA-A----CATGTAACGT-----C--ACGTCGGCAAG--AC----A----------------------TTTGCGT-------AAT--C-----CG-TTTAAATT-GCT-TCTGT-GACCGCTAGAAGCATCCCTGGGCATCGAAAGATAAG--TC--CT-----CGTAATG-----AATAGATAGCGAAAG--GCCAGCATT-CG-----TCCT---CGACGTCCTGCTATC--CGTCC-TGTTCT-ACTCTG--------G--------TGTT--CCG-------AT---------GCTG--G-----TGG---G----GTGTGGGAG--GCATCGTC-TA--TC--AATAAGAAGAGATTGGACGGAGGTTCGGTTTACAAACGAGTCGAGATTTCATCTCG-ACAGC--------TGTGACGGTCGTGCTCGG-GCTT-GCCCTATTAGTGCCGCAGAATGTTAC----------A-TG-TAC---------ATTGA----CGCCA---------------ATTCGGCAGAAGGGGCGTTACGGTTTAGGATGGAATT--ACAATT---CATGGAAAGACCCTT---------ATGATT--------GGCA---ATTTAACATGCGTACGCCACCGTGA--CA--AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACTAACG--TAACGTCACATTCTGCAGAAGGAAAGCGCACG-AC-CGCACTCCACACGTGTCACTCTACAGCAGCAGAATGAGAATGTGCTACTTTGTCCTGCGATGTCACC
gi|13 : ACAAAAGAGACCGTG-TA-TACTTG-AAAG-TGAAATAAAA-ATATTAA-A-AA--G--TA-TT-CTTTGAT-CA--CTCTGTAT--TCTTAAAGGGATA----------GT-TTAATGTACTAAATGCAAGTTT-CAGTACA--CAATTTGTTAAATGTC-------AATTCGTCTTGCATG-AT-G--GCA----ACAGCACAA-T----TT-----CT--------TGAGTTTCGATCC--TCAACGACAG----GTGTT------TAGTAATC-GATTAGA--ATTTCTAGC
gi|8 : AAAAGAAAATGTG-T--ATTT-A-AAAG-TTAAAT----------------A--G--TA-TT-CTTTGAT-CA--CT-TTTGT--TATTAAAG--ATA-C------------TAA---AC-AAACACGTGTTT-GA--------------------ATTC------GATCCTCCT-----GTATGG--CCA----ACGC----A-TGCTTTT-----CT--------GGAGTTGCGAGCC--TAAGCAACAC----GTCGTTACATGTAGTAAT-TGGTTAGA--ATTCCTTGCATTCATTGACGATATT---TAA-TGTATTAAAACAGA----AAA------A-ATGGTTTATGGGCTAAC----ATTTTGATGAGAAATGCCTCGCATACATTTGGGTGCTTTT-GGG------------ATG--CTG-----------GGCA-A-----G-GCAA-----GTTA----GAGTTTAAA---T-CAACAC--TGTGAATGCTTTA--TGG-AGACGGCATCAGCAGACCGT--GAGGCACCGCTTGAGATCG-C-GAACGATCGG---GA----ATA----CGTATAGCAT-----T--ACGTCGGCAAG--
gi|12 : gaAGAACAAACAGTC-TACAATT-A-ACAA-TTAGACCAAACATA-----A-AA--G--TT-TTGTTTTTAT-CA--CTGCTCAT--ACTTAATGGCACA-TTCTATATAG----AATATAC-----ACATGTTT-GGTTACT--CAGTTTGTTAAATATACATTTTCGATTCG-CTA---CG-AT-G--TCC----ATG-----G-TA---CTTATTGCT--------GGAGTTTCGAGCC--AACGCAACAC----GTCGT------CATCAATCAG-TTAGA--TTGTCTTGCATTTATTTACATTATT---C-A-
gi|17 : AAGAAATTATG-TA-TACT-T-AAAA-TTCAATAAAACATA-----A-AA--AGGTA-TT-TCTTGAT-AA--CTCTTTATACTTTTAAAAG---A-C-------AGT-TTAATATACT-AATGCGTGTTT-GAATACTGACA-TTTGTTAAATATCG-CGTTCGATTC-TTTT---TG-AT-G--
gi|21 : AGAAAC-GTTGTA-TACT-TTAAAC-TTAGATAAAA-GCATAA--A-AAGTA--TA-TT-CTTTGAT-CG--CTCTTCAT--TCTTATAGTCATgccag
gi|7 : aatggaaaacgAACTGTG-TATAACT-A-AATG-TTAAATACAC-GTA-----AGAA--A--AA-TT-CTTTGTT-CG--CTCTATAC--TATTAAAGGCATA----------GT-CTAATATCCTAAATGTGTGTT---AGTACT--GAATTTGTT-------------CAATTCGCCTT----G-AT-GAGGCATAGCACG-----A-TT---TT-----CT--------GGAATTTCGAGAA--TAAACGACAT----GTGGT------TAGTTGTC-GATTAGA--ATTTCTTGCATTTATTGACAGTGTT---C-AGTGCATTGA-----A----Aggtattatg
gi|2 : gACT-A-AAAAGTTAAAT-AAA-ACATTAAAA-AA--G--TA-TT-CTTCAATTCG--CTCTTTAT--TCTTGAAG---------CGG-TAGTCTTAATGT-CTAAAAGCGTGTTTCAAGT-TA--CAGTTT-CTAAGCATTC------GATTTGTCTTG--CT-AG-C--CCT----ACG-----CTTGCT-TT-----CTATAGACTCGGAATT----ATG--TGACCAAAACACAAGTGGT------TG----TATG-CTAGATTTTTTTTTGCATTTATTGATAATGTTA--A-A-TGTATTGA-----A----Acagaaaaaagtttttgaaataatattttgattgagagaggcctaggatgattgaaattgatcttttgtgtattattggaatgctgaaagttaggatacctcacataaatgtggcaaagatgtttggggttcatattgaaactaaatgctttatgaagacgatgtcatcaaacttaggtaccgtggggaccgccaacgata
gi|18 : agcagaaaatcgaggat-AA--A--CAGTA-TTCT--T-CGGTCTCTCTAC--TCTTAGAGGCATAACT-TGA-TA--------ATACTAAACGAGTGTTT-GAGTTCT--CAATTTATTAGATATCG-TGTTCGATTCGCCTT---cagaagaatattggttttggtgggggaaatgattgagaggtgccttgcatgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaagaacgtttggagtttttaaacgttgtaaatgcttcatagagacgatatcagcaaactgacactgtttgggttcgcccaagtgtaacgttacgccgacaagatacgtatatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatatatcaaattcttgtagcctacaacgagggacattacgggaggtctaggtcccactgtccgttctgtcctgctctcgtgtcatcgtgtgatcatattgggaggttagcttggtttggtaggcatcgtcgtttcaatagcaagagattggaaggaagctttgttaacagagtagttgagtctc
gi|14 : atactagtgtataaaatgcgtattctttatTAT--TTCAAAAGGCATA----------AT-TTAATATACTGAACGCGTGTTT-GAGTACT--CAGTATGTTAAATATCG-CGTTCAATTCACCTT----G-AT-GA-CCACAACACG-----T-TC---TT-----CT--------GGAATGTCGAACT--TAAGCGACAC----GTGGT------GAGTAATC-GACACGG--A-TTTTTGCATTCATGGAAAATAggt
gi|11 : A----ATG-----C-TT---TT-----CT--------GGAATT--AAGGGCTTAAGAGACAC----GTGGC------TAGAAATAT-ATCAGT--GTTTCTTGCATTCATTGGCATTATT---A-ATTGTATTAA-----A----Aacagaaaaacgtctgt
gi|23 : tcgactctttttcacagccacaa----ACG-----C-TT---TT-----CT--------GGCGTTTCGAGC---TAAGCGACAC----GTGGC------TTGTAATCcagaaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccatacatggtcggaaatgtttgtttgcatgttattgggatgcttgaagctcgagtgttgcagagtaatgtggcaaggcaagttgagttgagtttatatatgctaacactgtcaatg
gi|24 : agaacGT------TG-TAATC-GATTAAA--ATGTCTTGCATTCATTGGCAGTATT---C-A-acaggg
gi|4 : a------TAGTAATC-GGTTAGA--TTTTTTTGCATTTGTTGATAATGTTAAAC-G-T--ATTGA-----AACAGAAG------A-ATAatgtatt
gi|11 : ATA---C-A-TG-GTCGG-----A----AAT------G-TTTGTTTGCATGTT-------ATT-------GGGATGC------------TTGAAGC---TCGAGTGTTGCAGAGTAATG--T-------------GGCA-A-----G-GCAA-----GTTGAGTTGAGTTTATATATGCTAACACTttggttttggtggggaaatgattgagaggtgccttgcgtgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaaggacgtttggagtttttaaacgctgtaaatgctttatagagacgatatcagcaaactgacactgtttgggttcgcccatgtgtaaggttacgtcgacaagatacgtatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatacatcaaatcctcgtagtctacaacgagggacattacgggaggtctaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|19 : tcgactctttttcacagccacaaaatgcttttctggaattaagggcttaagagacacgtggctagaaatatatcagtgtttcttgcattcattggcattattaattgtattaaaacagaaaaaaagtcatgttttttttccgaataaatgtagggttgagagatcccc---C-A-TA-ATTGA-----A----TAT------A-ATCGTCTGTGTGTT-------ATT-------GAGATGC------------Tgtcaatg
gi|7 : attcatattcatattctgttgaatattgatgaggagagttctcg-A-TG-ATTGA-----A----ATT------G-ATCTTTTGTGTATT-------ATT-------GGAATGC------------TGAAAGT---T-AGG------------ATACCT-------------CACATAAATGTG-GCAAAGATGTTTG----GGGTTCATA---T-TGAAAC----TAAATGCTTTAT---GAAGACGATGTCATCAAAC--TTAGG--TACCGT--GGGGACCGC-CAACGATtaatgtagacaatagcagcaaactggcaccgttcgggaccgcccacgatc
gi|2 : gaactgtgtataactaaatgttaaatacacgtaagaaaaattctttgttcgctctatactattaaaggcatagtctaatatcctaaatgtgtgttagtactgaatttgttcaattcgccttgatgaggcatagcacgattttctggaatttcgagaataaacgacatgtggttagttgtcgattagaatttcttgcatttattgacagtgttcagtgcattgaaacagaaaaaagtttttgaaataatattttgattgagagaggcctagg-A-TG-ATTGA-----G----AGGTGCCTTGCAT-GT-TGCGTGCG-------ATT-------GG-ATCC------------TGGAAGA---T-GGG------------ATA--TCTCATAGTAATGTGACA-A-----G-AACG-----TTTG----GAGTTTTTA------AACG--TTGTAAATGCTTCAT--AG-AGACGATATCAGCAAAC--T--GA--CACTGTT-TGGG--T-T-C---------------GCCC-A----AGTGTAACGT-----T--ACGCCGACAAG--AT----ACGTATATATACTAACATTATATTTTGCGT-------AAG--C-----GA-TTCGACTC-GGAATATGTCGACTGCTAGAAGAACCCTTATATATCAAA---------TT--CT-----TGTA--G-----CCTA--CAACGAGGG--AC----ATTACGGGAGGTCT------AGGTCCCACTGTC--CGTTC-TGTCCT-GCTCTC--------G--------TGTCA-TCGTGTGATCAT---------ATTG--GGAGGTTAGCTTG----GTTTGGTAG--GCATCGTCGTT--TC--AATAGCAAGAGATTGGAAGGAAGCTTTGTTAACAGAGTAGTTGAGa
gi|4 : agcagaaaatcgaggatactaaaaagttaaataaaacattaaaaaagtattcttcaattcgctctttattcttgaagcggtagtcttaatgtctaaaagcgtgtttcaagttacagtttctaagcattcgatttgtcttgctagccctacgcttgctttctatagactcggaattatgtgaccaaaacacaagtggttgtatgctagatttttttttgcatttattgataatgttaaatgtattgaaacagaagaatattggttttggtgggggaa-A-TG-ATTGA-----G----AGG---------TGCCTTGCGTGTTGCGTGCGATT-------GG-ATCC------------TGGAAGA---T-GGG------------ATA--TCTCATAGTAATGTGACA-A-----GGACG------TTTG----GAGTTTTTA------AACGCTGT--AAATGCTTTAT--AG-AGACGATATCAGCAAAC--T--GA--CACTGTT-TGGG--T-T----------------CGCCC-A----TGTGTAAGGT-----T--ACGTCGACAAG--AT----ACGTATATACTAACATTATAT--TTTGCGT-------AAG--C-----GA-TTCGACTCGGAA-TATGTCGACTGCTAGAAGAACCCTTATACATC-------AAA--TC--CT-----CGTAGTtctc
gi|20 : tagtaatcggttagatttttttgcatttgttgataatgttaaacgtattgaaacagaagaatattggttttggtggggaa------------ATG--C-------------GACA-A-----A-GCAG-----CTTG----GAGTTCATT---T-TAAAACTTT--AAATGCT--ATATAG-AGATGTATGCA---AAC--T--GG--CACCGTTCTGGA-CT-GACCACAA-CCG--------CG-A-------GTAACGT-----C--ACctacaacgagggacattacgggaggtctaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|16 : ttggatggcataaagcaGTTCATA---T-TAACACTGTC--AATGCTTTATG--G-AGATGATATCAGCAAAC--T--GG--CACCATTTGAGACCG-T-CCAGGATCAG---GACGCC-------C-CG---CGT---------CGTCGGTAAGATAC----A----------------------TATATGT-------A
gi|3 : gcaaaggaagtgaaTCAGCAAGC--T--GG--CACCGTTTGGGACCG-C-CCACCATCAGTTTGACAGTA-AGATACATGTA-CGTATAAACGGACGTC--------AC----A----------------------TATGCAT-------AATAAC-----TT-CTTAGAG--GCT-TCTTT-GACTGCTGGAAACATCCGTACACAT----------G--TA--C------AGTAAGG-----AACAGATTGAGAGAT--GCCAATTTC-CG-----TCCT---TGACGTTCTGCAATC-------------T-ACTCTG--------GCGACAATATGTT--TCG-------AG---------GTTA--G-----CGT---G----GTGTAGAGG--ACATCGTCGTT--TC--AATAACA-GAAATTGGGCGAACGTTCTTTTTATGAACAATTCGAGATTTCATCT---------------------------TGTTCGG-GGTT-AACC-ATTA-TGCCGGAGATTGTTAC----------A-TT-GACGACTGTGTTATTGAATACCGCCA---------------ATTTCGAGGAGGGAGCATTAAAGT-----ATGGAGTTTAATAACTACACATGCACGGACCCTTTG-------GTGATG--------GGGAGGAATTTAACCGACGTATGCTACCCTGC--GA--AGATTGTACTTCAGGACGTCAATCCATCCACTCATTCACAATAAGCAGCG--tatggatgtcacattagcacaaccga
gi|10 : aAAAC--T--GG--CACCGTTCGGGACCG-C-CCACGATCAG---AACGCCC-C----TGTGTGACGT-----C--ACATTGGCATG--ATACAGA----------------------TTTGCATGTACGGAAAT--CACAATCGATTCTAATCGGCT-TCTTT-GA-CACTAGAAGCAACCCTGGGCATTGATGGATAAGCATCGTAT-----TGTAAAG-----AACAGAT--TGAAAGATGCCACCATC-CA-----TCGT---CGACGTCATCTTATCCTCACCT-TGTTGTGAGTTTA--------G--------TGTaatttgcagattcaagctgc
gi|5 : agatgcttaatgtagacaatagcagcT-TCTTT-GACCGCTAGAAGTCTTCCTTAGAATCGATGGATAAG--AC--ATTGTGCCGTAAGA-----AACAGATTACGAGAG--ACCAACATC-CG-----TCCT---CAACGTCCTGCTATC--CATCCATTTTCT-GTTTCT--------G--------CGCTTACCGCTTT---ATACAAAACAAGCT---------TGG---T----GTTTGA-AG--GCATCGTC-GT--TTGGAATAA-AAGAG--------GAAGTTCTACTTACAGACGAGTCGACATTTCATCTTGCGCAGCAACTCGCACGCG-TGGTCGTGTTCAGAGCTT-ACC--ATC--TGTCAAAGAACGTTAA----------AATGATGCCTGTTTT--ATTCAG---CGCCA---------------AACC-----AATTGGCATGA-GGT---AGAT---ATT--ACAACA---CATAAAGGAACTCAT---------TTGGTTTTAGTGGAGGCA---ATTTAACCGACATACGCT-TCGTGATTCATGAGATTGTACGTCAGTACAGTATTCCAT----ACATTCACAACAACCAAGG--TATCGT--CATTCTGCAACACGACAACGCTCGAACACGCACTggtactaaaggcatggtcattccaac
gi|6 : -TCTTC-GACCGCTAGAAGCACCCCTTGGCATCGACGGATAAG--TC--CT-----TGTGCCG-------TA---AG---GAG--GCCCACATC-CA-----TCTT---TGACGTCCTGCTTTC--CGTCA-TGTTCT-ACTCTGGAGTCACCG--------TGTT--GCG-------AG---------GTTGCAG-----CGT---G----GTGTATGAG--GCA-AATT-TATTTC--AATAA-CAGAGATTGAGTGTAAGGTCTGTTTACAGATGAGTCGAGATTTCATATCG-A-AGC--------AGTGACGGTCGTGCTCGG-ACTTAGC----TTCGTGTCGGAGAACTTTAC----------ACTG--AC---------GCCTA----CGTCATTCGGAATATTCTATATTTGGCGGAAGGAGTGTTCTCGATTGTGCTGGAATG--GCAACC---CATGGAAGGACCCTTTTGGTGATAGTGATG--------GACA---ATTTAACCAGCGAACG------------A--A----------CTGCACACCATTTCAT----TCATTCACAACAACCAGCGTATAACGTCA-A-TGTGCAGCAGAGCAACGCACG-AC-CGCgc
gi|15 : aaATAAG--TC--CT-----CGTACTGTAAGGAACAGAATGCAAGAG--GCAAACCTC-CG-----TTCTGTTC--CGTTCTCGTATC--CGTCC-TGTTCT-GATGTCACC-----G--------TGTT--GCG-------AG---------GTTA--G-----CGT---G----GTGTAGGAG--GCACCG-------TC--AA---------------------TTCTATTTACGGACGAATCGAGATATCATCTCG-GC
gi|9 : cgacgt-----CGTAAGG-----AACACTTTGCGAGGG--AACAACATC-CG-----TCCT---CATAGTCCTATTATC--CGTCC-TGCTAT-ATTATT--------G--------CGT----CA-------AT---------G-TGTTG-----TGA---GCAACGCGT-GGAGTAGAAT-GTCGTT--TC--AATAA-CACAGCCTGGATGGAATTTCTGTAAACGGACAATTTGAAATGTTATTTAG-ACAGC--------AGTTACAATTGTGTTTGG-GATC-ACTCT-T--GTGCCGTAGAATGTTTCATTGTCGCCTA-TG-T-T---------ATTCAGCTCCACCA---------------ATTTGACAGCGGGAGCGTTAT-GTTTAGGGTGAAATT--ACAACA---CATGg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): CGTACAGAACAGATTACGAGAGGCCGAATCATAAACCGGTCCTCTACATTCTGCTACCCGTTACTCCGTTTCTAACGCTTGAT
Alignments
lowQualScore : 1111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 1 22222222 3333333333 111111111 3333333333333333333 22222222222 11111 111111 1111111 111 1 2222222 4444444 1111111 222222222222 111 0000000000000000000000000000 1111 11111 1111 11111 1111 22222222222222 77777777777777777777777 111 1 333333 111111111 4444444444 6666666666666666666666666666666666666666666666666666 11 2222 111 3333333333333 1 11 11 0000000000000000000000000000000000000000000000 22 11 6666666666666 222222 7777777777777777777777 3 2222 11 111 1
lowQualScore : 1 1 0 999 55 0 44444444 4 777 4 4 2 55 55 1 5555555555 4 4 4 4 999 3 5 333333333 1 1111111111111111111 11111111111 11111 5 222222 66 4444444 55 3 0 1 111 9 4 3333333 11 7777777 8888888 8 999999999999 1 111 2222222222222222222222222222 5 2222 44444 0000 66666 2 7 55 0 888 1 4444 0 0 44 2 0 55555555555555 5 1 88888888888888888888888 1 777 1 1 444 8 1 1 0 22 222222 66 000000000 5555555555 1 0 66 777 4 777 4 0 555 0 1 55 0 4444444444444444444444444444444444444444444444444444 1 66 1 6 5 66 4 7777 5 5 111 5555555555555 8 1 0 88 11 3 3333333333333333333333333333333333333333333333 8 0 8 00 22 55 1 88 1 1 1 1 33 1111111111111 111111 0 2 6666666666666666666666 0 2 1 1 1111 33 1 222 7 1 6 0 1 7 5
lowQualScore : . . . ... .. . ........ . ... . . . .. .. . .......... . . . . ... . . ......... . ................... ........... ..... . ...... .. ....... .. . . . ... . . ....... .. ....... ....... . ............ . ... ............................ . .... ..... .... ..... . . .. . ... . .... . . .. . . .............. . . ....................... . ... . . ... . . . . .. ...... .. ......... .......... . . .. ... . ... . . ... . . .. . .................................................... . .. . . . .. . .... . . ... ............. . . . .. .. . .............................................. . . . .. .. .. . .. . . . . .. ............. ...... . . ...................... . . . . .... .. . ... . . . . . . .
lowQualScore : 0 0 0 444 22 1 55555555 4 888 4 4 7 55 00 3 7777777777 4 4 4 4 888 7 7 444444444 6 1111111111111111111 33333333333 11111 3 888888 11 1111111 00 6 1 8 000 2 5 5555555 77 1111111 6666666 9 333333333333 0 777 4444444444444444444444444444 7 1111 33333 6666 99999 0 0 55 1 111 0 0000 5 8 55 5 7 00000000000000 0 7 22222222222222222222222 8 444 0 0 000 8 0 4 4 00 111111 99 222222222 0000000000 0 8 11 888 4 888 7 1 777 1 1 33 1 5555555555555555555555555555555555555555555555555555 0 22 1 5 0 11 9 6666 7 2 333 2222222222222 0 0 0 66 22 2 4444444444444444444444444444444444444444444444 0 8 0 66 00 22 8 22 0 0 0 0 22 5555555555555 222222 2 5 0000000000000000000000 0 5 0 0 2222 88 0 333 3 0 7 7 0 3 5
consensus : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGT-ACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----TT----TT-----CTGGAGTTTCGAGCCTAAGCGAC------AC--GTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAAA-----NNGATNGTTTGCGTGTT-------ATT-------GGGATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCAG-----TTTG----GAGTTCATAT----TAACACTGT--AAATGCTTTAT--GGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATAC------GTATATAC---------ATATTTTGCGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCGA-G-GATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC-TGTTCTG-CTCT--------CGC---G----------------TTGCGAGGTTA----------GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NAGAGATTGG-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTTA--------CA-TG-----T-ACG--TG--TTATTCAG--C-CC--GCCA-ATTTGGCG-GAGGGAGCGTTAC-GTTTGGGGTGGAATTACAACACATGGAAGGACCC-TTT--------G----TGATG--G---GCAATTTAACCGGCGTACGCT--NC-C--G----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
Reference ( family-1268 ) : ACAAAAGAAACTGTGTANA-CT-A-AAA-GTTAAATAAAA-AT-AT--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGT-ACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----TN----TT-----CTGGAGTTTCGAGCNTAAGCGAC------AC--GTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAATATT---CA-TG-ATTGAAA-----ANGATNGTTTGCGTGTT-------ATT-------GGGATGC------------TGGAAGNT---GGGATG--T------------C------------G-ACAA----GGCAA-----TTTG----GAGTTCATAT----TAACGCTTT--AAATGCTTTAT--AGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCNCCCACGATCAG---GACGCCNACGTGTAACGT-CACGTCGGCAAGATAC------GTATATA----------ATATTTTGCGTAANCNATTC---GANTCGGNTTCT-TTGACCGCTAGAAGCACCCCTNNGCATCGA-G-GATAAG--TC--CT-----CGTA----------ANGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC-TGTTCTG-CTCT--------NGC---G----------------TTNCGANGTTG----------GCGNGGTGTA-GGAGGCATCGTCGTTTC-AATAA-AAGAGATTGG-G-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-GCAGCA--------GCGACGGTCGTGTTC-GGGNTTACCC-ATT-GTGCCGGAGAACGTTA--------CA-TG-----T-AC-------TTATTCAG--C-CC--GCCA-ATTTGGCG-GAGGGAGCGTTATNGTTTGNGATGGAATTACAACNCATGNANGGACCC-TTT--------G----TGATG--G---GCAATTTAACCGACGTACGCT--CC-T--G----A------AGATTGTAC-TCAGNACGNCATTCCAT----TCATTCACAACAACCAGCG--TANCGTCACATTNTGCAGCACGGCAACGCNCGAACACGCACT
gi|1 : ATAAAAGAAACTGTTTAAA-CT-A-AAA-CCTAAATGAAA-AC-A----AA-AA---CATC-CTCTGAT-CGCTCTTTAT--TCTTAAAGGCATACTTATTAGT-TTA-ATA-TACTAAACGCGTGTTT-GAGT-ACC--CAGTTTGTTAGATAT-TCTGTTTAATTCGCCTT---CG-AT--G-TCA----ACGA----TG----TT-----CTGGAATTTCAAGTGTAAGCGAT------AC--GTGGTTG------GCA--ATCTGATTAGAATTTTTTGCATTCATTGATAGTATT---CA-TG-ATTGAAA-----AGGATAGTCTGTGTGTT-------ATT-------GGGATGC------------TGGAAGCT---GGGATA--T-------------------------G-ACAA----GACAA-----TTTG----GCGTTCATAG----TAACACTTTTTAAATGCTTCATTTCGAGCCGTTTTCATTAAACT----GACACCGTTCTGGAACTTCAACAATCCG---GACGCCAACATGTAACGT-CACGTCGGCAAGACA----------------------------TTTGCGTAATCCGTTT---AAATTG-CTTCT-GTGACCGCTAGAAGCATCCCTGGGCATCGA-AAGATAAG--TC--CT-----CGTA----------ATGAATAGATAGCGAAAGGCCAG--CAT---TC-GTCCT---CGACGTCCTGCTATCCGTCC-TGTTCTA-CTCT--------GGT---G----------------TTCCGATGCTG----------GTGGGGTGTG-GGAGGCATCGTC-TATC-AATAAGAAGAGATTGG-ACGGAG-GTTCGGTTTACAAACGAGTCGAGATTTCATCTCG-ACAGCT--------GTGACGGTCGTGCTC-GGGCTTGCCCTATTAGTGCCGCAGAATGTTA--------CA-TG-----T-AC---------ATTGA------C--GCCA-ATTCGGCA-GAAGGGGCGTTACGGTTTAGGATGGAATTACAATTCATGGAAAGACCC--TT--------A----TGATT--G---GCAATTTAACATGCGTACGCC--AC-C--GTGACA------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACTAACG--TAACGTCACATTCTGCAGAAGGAAAGCGCACG-AC-CGCACT
gi|10 : --AGATGCTTAAT--GTAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---AACGCCCCTGTGTGACGT-CACATTGGCATGATACAGATTTGCATGTACGG-------AAAT----CACAATCGATTC---TAATCGGCTTCT-TTGA-CACTAGAAGCAACCCTGGGCATTGATG-GATAAGCATCGTAT-----TGTA----------AAGAACAGATTGAAAGATGCCAC--CAT---CC-ATCGT---CGACGTCATCTTATCC-TCA-CCTT----------------------G----------------TTGTGAGTTTA----------GTGTGGTACT-AAAGGCATGGTCATTCC-AAccacacgtgtcactctacagcagcagaatgagaatgtgctactttgtcctgcgatgtcacc
gi|11 : TCGACTCTTTTT---CA-CA--G-CCACAAAATGC----TT----TT-----CTGGAATTAAGGGCTTAAGAGAC------AC--GTGGCTA------GAA--ATA-TATCAGTGTTTCTTGCATTCATTGGCATTATT---AATTGTATTAAAA-----CAGAc
gi|11 : ATA---CA-TG-GTCGGAA-----ATGTTTGTTTGCATGTT-------ATT-------GGGATGC------------TTGAAGCT---CGAGTG--TTGCAGAGTAATGT------------G-GCAA----GGCAA-----GTTGAGTTGAGTTTATATATGCTAACACTGT--CAATGaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccatacatggtcggaaatgtttgtttgcatgttattgggatgcttgaagctcgagtgttgcagagtaatgtggcaaggcaagttgagttgagtttatatatgctaacactgtcaatg
gi|12 : tcgactctttttcacagccacaaaatgcttttctggaattaagggcttaagagacacgtggctagaaatatatcagtgtttcttgcattcattggcattattaattgtattaaaacagaaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccAGAACAAACAGTCTACAATT-A-ACA-ATTAGACCAAA--C-AT--AAA-AG---TTTTGTTTTTAT-CACTGCTCAT--ACTTAATGGCACATT--------CTATATA-GAATATACACATGTTT-GGTT-ACT--CAGTTTGTTAAATATACATTTTCGATTCGC-TA---CG-AT--G-TCC----ATGG----TA----CTTATTGCTGGAGTTTCGAGCCAACGCAAC------AC--GTCGTCA------TCA--ATC-AGTTAGATTGTCTTGCATTTATTTACATTATT---CA-
gi|13 : ACAAAAGAGACCGTGTATA-CTTG-AAA-GTGAAATAAAA-AT-ATTAAAA-AG---TATT-CTTTGAT-CACTCTGTAT--TCTTAAAGGGATA-------GT-TTA-ATG-TACTAAATGCAAGTTT-CAGT-ACA--CAATTTGTTAAATGT-CA------ATTCGTCTTGCATG-AT--G-GCA----ACAG----CACAATTT-----CTTGAGTTTCGATCCTCAACGAC------AG--GTGTTTA------GTA--ATC-GATTAGAATTTCTAGC
gi|14 : TAT--TTCAAAAGGCATA-------AT-TTA-ATA-TACTGAACGCGTGTTT-GAGT-ACT--CAGTATGTTAAATAT-CGCGTTCAATTCACCTT----G-AT--GACCACAACACGT----TC----TT-----CTGGAATGTCGAACTTAAGCGAC------AC--GTGGTGA------GTA--ATC-GACACGGATTT-TTGCATTCATGGAAAATA
gi|15 : ATAAG--TC--CT-----CGTACTGTA-----AGGAACAGAATGCAAGAGGCAAA--CCT---CC-GTTCTGTTC--CGTTCTCGTATCCGTCC-TGTTCTG-ATGT--------CACCGTG----------------TTGCGAGGTTA----------GCGTGGTGTA-GGAGGCACCGTC----------------------------A-ATTCTATTTACGGACGAATCGAGATATCATCTCG-GCacagaaaaacgtctgt
gi|16 : cgacgtTG----AAGTTCATAT----TAACACTGT--CAATGCTTTAT--GGAGATGATATCAGCAAACT----GGCACCATTTGAGACCGTCCAGGATCAG---GACGCCC-CGCGT--------CGTCGGTAAGATAC------ATATATGT---------ATATg
gi|17 : gcaaaggaagAAGAAATTATGTATA-CT-T-AAA-ATTCAATAAAACAT-AA--AAA-GG---TATT-TCTTGAT-AACTCTTTATACTTTTAAAAG---AC-----AGT-TTA-ATA-TACT-AATGCGTGTTT-GAAT-ACTGACA-TTTGTTAAATAT-CGCGTTCGATTC-TTTT---TG-ATG-G-CCA----ggatgtcacattagcacaaccga
gi|18 : T-AT--AAACAG---TATT-CTTCGGT-C--TCTCTAC--TCTTAGAGGCATA-------AC-TTG-ATAATACTAAACGAGTGTTT-GAGT-TCT--CAATTTATTAGATAT-CGTGTTCGATTCGCCTT---g
gi|19 : atactagtgtataaaatgcgtattctt---CA-TA-ATTGAAT-----ATAATCGTCTGTGTGTT-------ATT-------GAGATGC------------Tggt
gi|19 : attcatattcatattctgttgaatattgatgaggagagttctcgTTG--AGATGCTTAAT--GTAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCtaatgtagacaatagcagcaaactggcaccgttcgggaccgcccacgatc
gi|2 : attcatattcatattctgttgaatattgatgaggagagttctcgcataattgaatataatcgtctgtgtgttaAAATCGAGGATA-CT-A-AAAAGTTAAATAAAACATTAA--AAA-AG---TATT-CTTCAATTCGCTCTTTAT--TCTTGAAG---CGGT----AGTCTTA-ATG-T-CTAAAAGCGTGTTTCAAGTTAC----AGTTT-CTAA------GCATTCGATTTGTCTTG--CT-AG--C-CCT----ACGC----TTGCT-TT-----CTATAGACTCGGAATTATGTGACCAAAACACAAGTGGTT-------GTATGCTA-GATTT---TTTTTTGCATTTATTGATAATGTTA--AA-TGTATTGAAA-----CAGA
gi|2 : agcagaA-TG-ATTGAGA-------GGTGCCTTGCATGTTGCGTGCGATT-------GG-ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GAACG-----TTTG----GAGTTTTTA------AACGTTGT--AAATGCTTCAT--AGAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCAAGTGTAACGT-TACGCCGACAAGATAC------GTATATATACTAACATTATATTTTGCGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATATATC--------AAA--TT--CT-----TGTAGCCTACAACGAGGGAC--ATTACGGGAGG-------------------T---CTAGGTCCCACTGTCCGTTC-TGTCCTG-CTCT--------CGT---GTCATCGTGTGATCATATTGGGAGGTTA----------GCTTGGTTTG-GTAGGCATCGTCGTTTC-AATAGCAAGAGATTGGAA-GGAA-GCTTTGTTAACAGAGTAGTTGAGagaatattggttttggtgggggaaatgattgagaggtgccttgcatgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaagaacgtttggagtttttaaacgttgtaaatgcttcatagagacgatatcagcaaactgacactgtttgggttcgcccaagtgtaacgttacgccgacaagatacgtatatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatatatcaaattcttgtagcctacaacgagggacattacgggaggtctaggtcccactgtccgttctgtcctgctctcgtgtcatcgtgtgatcatattgggaggttagcttggtttggtaggcatcgtcgtttcaatagcaagagattggaaggaagctttgttaacagagtagttgagtctc
gi|20 : agcagaaaatcgaggatactaaaaagttaaataaaacattaaaaaagtattcttcaattcgctctttattcttgaagcggtagtcttaatgtctaaaagcgtgtttcaagttacagtttctaagcattcgatttgtcttgctagccctacgcttgctttctatagactcggaattatgtgaccaaaacacaagtggttgtatgctagatttttttttgcatttattgataatgttaaatgtattgaaacagaagaatattggttttggtgggggaaATG---------------C------------G-ACAA----AGCAG-----CTTG----GAGTTCATTT----TAAAACTTT--AAATGCTATAT--AGAGATG-TAT--GCAAACT----GGCACCGTTCTGGACTGACCACAA------------CCGCGAGTAACGT-CACtctc
gi|21 : ttggatggcataaagcaAGAAACGTTGTATA-CT-TTAAA-CTTAGATAAAA-GC-AT--AAA-AAGTATATT-CTTTGAT-CGCTCTTCAT--TCTTATAGTCAT
gi|22 : aatggaaaacg-----CGTA----------CAGAACAGATTACGAGAGGCCGAATCATAAACCGGTCCT---CTACATTCTGCTACCCGT---TACTCCGTTTCT--------AAC---G----------------CTggtattatg
gi|23 : ----ACGC----TT----TT-----CTGGCGTTTCGAGC-TAAGCGAC------AC--GTGGCTT------GTA--ATC-tgat
gi|24 : agaacGTT-------GTA--ATC-GATTAAAATGTCTTGCATTCATTGGCAGTATT---CA-acaggg
gi|3 : aATCAGCAAGCT----GGCACCGTTTGGGACCGCCCACCATCAGTTTGACA-------GTAAGATACATGTACGTATAA-AC------GGACGTC----------ACATAT-GCATAATAACTTCTTAGA---GGCTTCT-TTGACTGCTGGAAACATCCGTACACAT----G-TACA----------------GTA----------AGGAACAGATTGAGAGATGCCAA--TTT---CC-GTCCT---TGACGTTCTGCAATC-----------TA-CTCT--------GGC---GACAATATG--------TTTCGAGGTTA----------GCGTGGTGTA-GAGGACATCGTCGTTTC-AATAA-CAGAAATTGG-G-CGAACGTTCTTTTTATGAACAATTCGAGATTTCATCT---------------------------TGTTC-GGGGTTAACC-ATT-ATGCCGGAGATTGTTA--------CA-TT-----G-ACGACTGTGTTATTGAA--TACC--GCCA-ATTTCGAG-GAGGGAGCATTAAAGTATGGAGTTTAATAACTACACATGCACGGACCC-TTTG-------G----TGATG--GGGAGGAATTTAACCGACGTATGCTACCC-TGCG----A------AGATTGTACTTCAGGACGTCAATCCATCCACTCATTCACAATAAGCAGCG--atgtatt
gi|4 : TA------GTA--ATC-GGTTAGATTTTTTTGCATTTGTTGATAATGTTAAACG-T--ATTGAAA-----aatttgcagattcaagctgc
gi|4 : A-TG-ATTGAGA-------GGTGCCTTGCGTGTTGCGTGCGATT-------GG-ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GGACG-----TTTG----GAGTTTTTA------AACGCTGT--AAATGCTTTAT--AGAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCATGTGTAAGGT-TACGTCGACAAGATAC------GTATATACTAACATT--ATATTTTGCGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATACATC--------AAA--TC--CT-----CGTAGTCTACAACGAGGGAC--ATTACGGGAGGTCcagaagaatattggttttggtggggaaatgattgagaggtgccttgcgtgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaaggacgtttggagtttttaaacgctgtaaatgctttatagagacgatatcagcaaactgacactgtttgggttcgcccatgtgtaaggttacgtcgacaagatacgtatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatacatcaaatcctcgtagtctacaacgagggacattacgggaggtctaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|5 : tagtaatcggttagatttttttgcatttgttgataatgttaaacgtattgaaacagaagaatattggttttggtggggaaTTCT-TTGACCGCTAGAAGTCTTCCTTAGAATCGATG-GATAAG--AC--ATTGTGCCGTA----------AGAAACAGATTACGAGAGACCAA--CAT---CC-GTCCT---CAACGTCCTGCTATCCATCCATTTTCTG-TTTC--------TGC---GC---------------TTACCGCTTTATACAAAACAAGCTTGGTGTTTGAAGGCATCGTCGTTTGGAATAA-AAGAG---------GAA-GTTCTACTTACAGACGAGTCGACATTTCATCTTGCGCAGCAACTCGCACGCG-TGGTCGTGTTCAGAGCTTA-CC-ATC--TGTCAAAGAACGTTAAAATGATGCC-TG-----T--T-------TTATTCAG--CGCCAAACCA-A-TTGGCATGAGG------TA--------GAT---ATTACAACACATAAAGGAACTCATTT--------GGTTTTAGTGGAG---GCAATTTAACCGACATACGCT--TCGT--G----ATTCATGAGATTGTACGTCAGTACAGTATTCCAT----ACATTCACAACAACCAAGG--TATCGT--CATTCTGCAACACGACAACGCTCGAACACGCACTtaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|6 : TCT-TCGACCGCTAGAAGCACCCCTTGGCATCGACG-GATAAG--TC--CT-----TGTG----------CCGTA-AG-------GAGGCCCA--CAT---CC-ATCTT---TGACGTCCTGCTTTCCGTCA-TGTTCTA-CTCTGGAGTCACCGT---G----------------TTGCGAGGTTGCA--------GCGTGGTGTA-TGAGGCAAATTTATTTC-AATAA-CAGAGATTGA-GTGTAA-GGTCTGTTTACAGATGAGTCGAGATTTCATATCG-A-AGCA--------GTGACGGTCGTGCTC-GGACTTAGCT--TC-GTGTCGGAGAACTTTA--------CACTGACGCCT-ACG------TCATTCGGAAT-AT--TCTATATTTGGCG-GAAGGAGTGTTCTCGATTGTGCTGGAATGGCAACCCATGGAAGGACCC-TTTTGGTGATAG----TGATG--G---ACAATTTAACCAGCGAAC-----------G----A-------------AC-T--GCACACCATTTCAT----TCATTCACAACAACCAGCGTATAACGTCA-A-TGTGCAGCAGAGCAACGCACGAgc
gi|7 : aaAACTGTGTATAACT-A-AAT-GTTAAATACAC-GT-AA--GAA-AA----ATT-CTTTGTT-CGCTCTATAC--TATTAAAGGCA---T----AGT-CTA-ATA-TCCTAAATGTGTGTT---AGT-ACT--GAATTT-------------GTTCAATTCGCCTT----G-ATGAG-GCATAGCACGA----TT----TT-----CTGGAATTTCGAGAATAAACGAC------AT--GTGGTTA------GTT--GTC-GATTAGAATTTCTTGCATTTATTGACAGTGTT---CAGTGCATTGAAA-----CAGAccgc
gi|7 : gA-TG-ATTGAAA-----TTGATCTTTTGTGTATT-------ATT-------GGAATGC------------TGAAAGTT---AGGATACCT------------C------------ACATAAATGTGGCAAAGATGTTTG----GGGTTCATAT----TGAAAC--T--AAATGCTTTAT--GAAGACGATGTCATCAAACTTA--GGTACCG-TGGGGACCGCCAACGATaaaaagtttttgaaataatattttgattgagagaggcctaggatgattgaaattgatcttttgtgtattattggaatgctgaaagttaggatacctcacataaatgtggcaaagatgtttggggttcatattgaaactaaatgctttatgaagacgatgtcatcaaacttaggtaccgtggggaccgccaacgata
gi|8 : gaactgtgtataactaaatgttaaatacacgtaagaaaaattctttgttcgctctatactattaaaggcatagtctaatatcctaaatgtgtgttagtactgaatttgttcaattcgccttgatgaggcatagcacgattttctggaatttcgagaataaacgacatgtggttagttgtcgattagaatttcttgcatttattgacagtgttcagtgcattgaaacagaaaaaagtttttgaaataatattttgattgagagaggcctaggAAAAGAAAATGTGTAT--TT-A-AAA-GTTAAATA----------------G---TATT-CTTTGAT-CACT-TTTGT--TATTAAAG--ATACT----AA-----------AC-AAACACGTGTTT-GAAT---------------------------TCGATCCTCCT-----GTAT--GGCCA----ACGCATGCTT----TT-----CTGGAGTTGCGAGCCTAAGCAAC------AC--GTCGTTACATGTAGTA--ATT-GGTTAGAATTCCTTGCATTCATTGACGATATT---TAATGTATTAAAACAGAAAAAATGGTTTATGGGCTAAC----ATTTTGATGAGAAATGCCTCGCATACATTTGGGTGCTTTTGGGATGC-T------------G------------G-GCAA----GGCAA-----GTTA----GAGTTTAAAT----CAACACTGT--GAATGCTTTAT--GGAGACGGCATCAGCAGACCGTGAGGCACCGCTTGAGATCGCGAACGATCGG---GA---ATACGTATAGCAT-TACGTCGGCAAGa
gi|9 : ga-----CGTA----------AGGAACACTTTGCGAGGGAACAA--CAT---CC-GTCCT---CATAGTCCTATTATCCGTCC-TGCTATA-TTAT--------TGC---G----------------TCAATGTGTTGTGAGCAAC--GCGTGGAGTA-GAA-----TGTCGTTTC-AATAA-CACAGCCTGG-ATGGAA-TTTCTGTAAACGGACAATTTGAAATGTTATTTAG-ACAGCA--------GTTACAATTGTGTTT-GGGATCACTC--TT-GTGCCGTAGAATGTTT--------CATTG-----TCGCCTATG--TTATTCAG--CTCC--ACCA-ATTTGACA-GCGGGAGCGTTAT-GTTTAGGGTGAAATTACAACACATG
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 1 11111111 3333333333 11 111111111 333333333333333333333333333333333 11111111 1111111 111 1 11 4444444444444 222222 222222222222 111 0000000000000000000000000000 1111 11111 1111 11111 1111 2222222222 5555555555555555555 1111 111 1 44444444444444444444444444444444444444 111111 999999999999999999999999999999999999 11 222222 333333333 222222 666666666666666666666666666666666666 2222 11 6666666666666 11 111 555555555555555555555 2222 11 111 1
lowQualScore : 4 0 999 55 0 99999999 999999 4 4 2 55 55 1 5555555555 4 4 4 4 00 3 5 333333333 1 888888888888888888888888888888888 66666666 4 4 4444444 55 3 0 2 111 9 4 11 99999 11 2222222222222 333333 999999999999 1 111 2222222222222222222222222222 5 0000 22222 0000 66666 55 0 66 1 4444 0 0 0 2 0 0000000000 55 5 1 3 1 4444444444444444444 6 0 7777 0 444 8 1 0 22 55555555555555555555555555555555555555 3 66 777 4 777 4 0 444444 77 1 333333333333333333333333333333333333 66 1 66 66 66 1 6 5 44 4 444444 5 5 999 000000000 5 8 8 000000 1 999999999999999999999999999999999999 8 0 22 7777 22 8 1 1 0 0 33 1111111111111 33 777 0 6 777777777777777777777 2 2 0 0 1111 33 222 7 7 5
lowQualScore : . . ... .. . ........ ...... . . . .. .. . .......... . . . . .. . . ......... . ................................. ........ . . ....... .. . . . ... . . .. ..... .. ............. ...... ............ . ... ............................ . .... ..... .... ..... .. . .. . .... . . . . . .......... .. . . . . ................... . . .... . ... . . . .. ...................................... . .. ... . ... . . ...... .. . .................................... .. . .. .. .. . . . .. . ...... . . ... ......... . . . ...... . .................................... . . .. .... .. . . . . . .. ............. .. ... . . ..................... . . . . .... .. ... . . .
lowQualScore : 2 0 444 22 1 33333333 333333 4 4 7 55 00 3 7777777777 4 4 4 8 66 7 7 444444444 6 888888888888888888888888888888888 11111111 4 7 1111111 00 6 3 7 000 2 5 66 11111 77 4444444444444 111111 333333333333 0 777 4444444444444444444444444444 7 6666 55555 6666 99999 55 1 11 0 0000 5 8 7 5 7 8888888888 22 0 7 0 8 5555555555555555555 0 6 0000 6 000 8 4 4 00 55555555555555555555555555555555555555 2 11 888 4 888 7 1 444444 55 1 888888888888888888888888888888888888 99 4 99 99 22 1 5 0 44 9 444444 7 2 222 000000000 6 0 8 444444 0 000000000000000000000000000000000000 0 8 00 8888 00 0 0 0 2 8 22 5555555555555 88 555 2 5 888888888888888888888 5 5 2 8 2222 88 333 3 3 5
consensus : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----T-----TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAAACAGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACACTGT--AAATGCTTTATG--GAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATAT-A---------C-------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCG-A-GGATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCT--------CGC--------G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NAGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTTA----CA-TGTACGCCTATGTTATTCAG--C-CC--GCCA-ATTTGGCGGAGGGAGCGTTA-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TTT--------GG---TGATG--GGCA---ATTTAACCGGCGTACGCTAC-C----G----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
Reference ( family-1268 ) : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----T-----TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAAANNGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACACTGT--AAATGCTTTATG--GAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATAT-A---------C-------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCG-A-GGATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCT--------CGC--------G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NAGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTTA----CA-TGTACG----TGTTATTCAG--C-CC--GCCA-ATTTGGCGGAGGGAGCGTTA-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TTT--------G----TGATG--GGCA---ATTTAACCGGCGTACGCTNC-C----G----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
gi|1 : ATAAAAGAAACTGTTTAAA-CT-A-AAA-CCTAAATGAAA-AC-AA--AAA------CATC-CTCTGAT-CGCTCTTTAT--TCTTAAAGGCATACTTATTAGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACC--CAGTTTGTTAGATAT-TCTGTTTAATTCGCCTT---CG-AT--G-TCA----ACGA----T-----GTTCT--------GGAATTTCAAG-TGTAAGCGATACGTGGTTG------GCA--ATCTGATTAGAATTTTTTGCATTCATTGATAGTATT---CA-TG-ATTGAAAAGGA-----TAGTCTGTGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATA--T-------------------------G-ACAA----GACA-----ATTTG----GCGTTCATAG----TAACACTTTTTAAATGCTTCATTTCGAGCCGTTTTCATTAAACT----GACACCGTTCTGGAACTTCAACAATCCG---GACGCCAACATGTAACGT-CACGTCGGCAAGACA------------------------------TTTG----CGTAATCCGTTT---AAATT-GCTTCT-GTGACCGCTAGAAGCATCCCTGGGCATCGAA-AGATAAG--TC--CT-----CGTA----------ATGAATAGATAGCGAAAGGCCAG--CAT---TC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTACTCT--------GGT--------G----------------TTC--CGATGCT--G--GTGGGGTGTG-GGAGGCATCGTC-TATC-AATAAGAAGAGATTG-G-ACGGAG-GTTCGGTTTACAAACGAGTCGAGATTTCATCTCG-ACAGCT--------GTGACGGTCGTGCTC-GGGCTTGCCCTATTAGTGCCGCAGAATGTTA----CA-TGTAC---------ATTGA------C--GCCA-ATTCGGCAGAAGGGGCGTTA-CGGTTTAGGATGGA-ATTACAATTCATGGAAAGACCC--TT--------A----TGATT--GGCA---ATTTAACATGCGTACGCCAC-C----GTGACA------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACTAACG--TAACGTCACATTCTGCAGAAGGAAAGCGCACG-AC-CGCACT
gi|10 : --AGATGCTTAATG--TAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---AACGCCCCTGTGTGACGT-CACATTGGCATGATACAGATTT-G---------C-------ATGTACGGAAATCACAATCGATTC---TAATCGGCTTCT-TTGA-CACTAGAAGCAACCCTGGGCATTG-ATGGATAAGCATCGTAT-----TGTA----------AAGAACAGATTGAAAGATGCCAC--CAT---CC-ATCGT---CGACGTCATCTTATCC-TCA------CCTT---------------------------G----------------TTG--TGAGTTT--A--GTGTGGTACT-AAAGGCATGGTCATTCC-AAccacacgtgtcactctacagcagcagaatgagaatgtgctactttgtcctgcgatgtcacc
gi|11 : TCGACTCTTTTT---CA-CA--G-CCACAAAATGC----T-----TTTCT--------GGAATTAAGGG-CTTAAGAGACACGTGGCTA------GAA--ATA-TATCAGTGTTTCTTGCATTCATTGGCATTATT---AATTGTATTAAAACAGA-----c
gi|11 : ATA---CA-TG-GTCGGAAATGT-----TTGTTTGCATGTT-------A-----TTGG-----GATGC------------TTGAAGCT---CGAGTG--TTGCAGAGTAATGT------------G-GCAA----GGCA-----AGTTGAGTTGAGTTTATATATGCTAACACTGT--CAATGaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccatacatggtcggaaatgtttgtttgcatgttattgggatgcttgaagctcgagtgttgcagagtaatgtggcaaggcaagttgagttgagtttatatatgctaacactgtcaatg
gi|12 : tcgactctttttcacagccacaaaatgcttttctggaattaagggcttaagagacacgtggctagaaatatatcagtgtttcttgcattcattggcattattaattgtattaaaacagaaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccAGAACAAACAGTCTACAATT-A-ACA-ATTAGACCAAA--C-AT--AAA-AG---TTTTGTTTTTAT-CACTGCTCAT--ACTTAATGGCACATT--------CTATATA-GAATATACACATGTTT-GGTTACT--CAGTTTGTTAAATATACATTTTCGATTCGC-TA---CG-AT--G-TCC----ATGG----TACTTATTGCT--------GGAGTTTCGAG-CCAACGCAACACGTCGTCA------TCA--ATC-AGTTAGATTGTCTTGCATTTATTTACATTATT---CA-
gi|13 : ACAAAAGAGACCGTGTATA-CTTG-AAA-GTGAAATAAAA-AT-ATTAAAA-AG---TATT-CTTTGAT-CACTCTGTAT--TCTTAAAGGGATA-------GT-TTA-ATG-TACTAAATGCAAGTTT-CAGTACA--CAATTTGTTAAATGT-CA------ATTCGTCTTGCATG-AT--G-GCA----ACAG----CACAA-TTTCT--------TGAGTTTCGAT-CCTCAACGACAGGTGTTTA------GTA--ATC-GATTAGAATTTCTAGC
gi|14 : TAT--TTCAAAAGGCATA-------AT-TTA-ATA-TACTGAACGCGTGTTT-GAGTACT--CAGTATGTTAAATAT-CGCGTTCAATTCACCTT----G-AT--GACCACAACACGT----T-----CTTCT--------GGAATGTCGAA-CTTAAGCGACACGTGGTGA------GTA--ATC-GACACGGATTT-TTGCATTCATGGAAAATA
gi|15 : ATAAG--TC--CT-----CGTACTGTA-----AGGAACAGAATGCAAGAGGCAAA--CCT---CC-GTTCTGTTC--CGTTCTCGTATCCGTCC------TGTT-CTGATGT--------CACCGT-----G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCACCGTC-----------------------------A-ATTCTATTTACGGACGAATCGAGATATCATCTCG-GCacagaaaaacgtctgt
gi|16 : cgacgtAA----GGAA-----GT--G----AAGTTCATAT----TAACACTGT--CAATGCTTTATG--GAGATGATATCAGCAAACT----GGCACCATTTGAGACCGTCCAGGATCAG---GACGCCC-CGCGT--------CGTCGGTAAGATACATATAT-G---------T-------ATATg
gi|17 : gcaAAGAAATTATGTATA-CT-T-AAA-ATTCAATAAAACAT-AA--AAA-GG---TATT-TCTTGAT-AACTCTTTATACTTTTAAAAG---AC-----AGT-TTA-ATA-TACT-AATGCGTGTTT-GAATACTGACA-TTTGTTAAATAT-CGCGTTCGATTC-TTTT---TG-ATG-G-CCA----ggatgtcacattagcacaaccga
gi|18 : T-AT--AAACAG---TATT-CTTCGGT-C--TCTCTAC--TCTTAGAGGCATA-------AC-TTG-ATAATACTAAACGAGTGTTT-GAGTTCT--CAATTTATTAGATAT-CGTGTTCGATTCGCCTT---g
gi|19 : atactagtgtataaaatgcgtattctt---CA-TA-ATTGAATATAA-----TCGTCTGTGTGTT-------A-----TTGA-----GATGC------------Tggt
gi|19 : attcatattcatattctgttgaatattgatgaggagagttctcg--AGATGCTTAATG--TAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCtaatgtagacaatagcagcaaactggcaccgttcgggaccgcccacgatc
gi|2 : attcatattcatattctgttgaatattgatgaggagagttctcgcataattgaatataatcgtctgtgtgttattgAAATCGAGGATA-CT-A-AAAAGTTAAATAAAACATTAA--AAA-AG---TATT-CTTCAATTCGCTCTTTAT--TCTTGAAG---CGGT----AGTCTTA-ATG-T-CTAAAAGCGTGTTTCAAGT--TA-CAGTTT-CTAA------GCATTCGATTTGTCTTG--CT-AG--C-CCT----ACGC----TTGC--TTTCTATAGACTCGGAATTATGTGACCAAAAC-ACAAGTGGTT-------GTATGCTA-GATT---TTTTTTTGCATTTATTGATAATGTTA--AA-TGTATTGAAACAGA-----
gi|2 : agcagaA-TG-ATTGAGA--GG-----TGCCTTGCATGTTGCGTGCGA-----TTGG------ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GAAC-----GTTTG----GAGTTTTTA------AACGTTGT--AAATGCTTCATA--GAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCAAGTGTAACGT-TACGCCGACAAGATACGTATAT-ATACTAACATT-------ATATTTTG----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATATATC--------AAA--TT--CT-----TGTAGCCTACAACGAGGGAC--ATTACGGGAGG-------------------T---CTAGGTCCCACTGTCCGTTC------TGTC-CTGCTCT--------CGT--------GTCATCGTGTGATCATATTG--GGAGGTT--A--GCTTGGTTTG-GTAGGCATCGTCGTTTC-AATAGCAAGAGATTG-GAA-GGAA-GCTTTGTTAACAGAGTAGTTGAGagaatattggttttggtgggggaaatgattgagaggtgccttgcatgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaagaacgtttggagtttttaaacgttgtaaatgcttcatagagacgatatcagcaaactgacactgtttgggttcgcccaagtgtaacgttacgccgacaagatacgtatatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatatatcaaattcttgtagcctacaacgagggacattacgggaggtctaggtcccactgtccgttctgtcctgctctcgtgtcatcgtgtgatcatattgggaggttagcttggtttggtaggcatcgtcgtttcaatagcaagagattggaaggaagctttgttaacagagtagttgagtctc
gi|20 : agcagaaaatcgaggatactaaaaagttaaataaaacattaaaaaagtattcttcaattcgctctttattcttgaagcggtagtcttaatgtctaaaagcgtgtttcaagttacagtttctaagcattcgatttgtcttgctagccctacgcttgctttctatagactcggaattatgtgaccaaaacacaagtggttgtatgctagatttttttttgcatttattgataatgttaaatgtattgaaacagaagaatattggttttggtgggggaaATG---------------C------------G-ACAA----AGCA-----GCTTG----GAGTTCATTT----TAAAACTTT--AAATGCTATATA--GAGATG-TAT--GCAAACT----GGCACCGTTCTGGACTGACCACAA------------CCGCGAGTAACGT-CACtctc
gi|21 : ttggatggcataaagcaAGAAACGTTGTATA-CT-TTAAA-CTTAGATAAAA-GC-AT--AAA-AAGTATATT-CTTTGAT-CGCTCTTCAT--TCTTATAGTCAT
gi|22 : aatggaaaacg-----CGTA----------CAGAACAGATTACGAGAGGCCGAATCATAAACCGGTCCT---CTACATTCTGCTACCCGTggtattatg
gi|23 : ----ACGC----T-----TTTCT--------GGCGTTTCGAG-C-TAAGCGACACGTGGCTT------GTA--ATC-tactccgtttctaacgcttgat
gi|24 : agaacGTT-------GTA--ATC-GATTAAAATGTCTTGCATTCATTGGCAGTATT---CA-acaggg
gi|3 : aATCAGCAAGCT----GGCACCGTTTGGGACCGCCCACCATCAGTTTGACA-------GTAAGATACATGTACGTATAA-ACGGACGTCA---------C-------ATAT---G----CATAATAACTTCTTAGA---GGCTTCT-TTGACTGCTGGAAACATCCGTACACAT-----GTACA----------------GTA----------AGGAACAGATTGAGAGATGCCAA--TTT---CC-GTCCT---TGACGTTCTGCAATC-----------------TACTCT--------GGC--------GACAATATG--------TTT--CGAGGTT--A--GCGTGGTGTA-GAGGACATCGTCGTTTC-AATAA-CAGAAATTG-G-G-CGAACGTTCTTTTTATGAACAATTCGAGATTTCATCT---------------------------TGTTC-GGGGTTAACC-ATT-ATGCCGGAGATTGTTA----CA-TTGACGACTGTGTTATTGAA--TACC--GCCA-ATTTCGAGGAGGGAGCATTA-AAGTATGGAGTTTA-ATAACTACACATGCACGGACCC-TTT--------GG---TGATG--GGGAGGAATTTAACCGACGTATGCTAC-CCTGCG----A------AGATTGTACTTCAGGACGTCAATCCATCCACTCATTCACAATAAGCAGCG--atgtatt
gi|4 : TA------GTA--ATC-GGTTAGATTTTTTTGCATTTGTTGATAATGTTAAACG-T--ATTGAAACAGA-----aatttgcagattcaagctgc
gi|4 : A-TG-ATTGAGA--GG-----TGCCTTGCGTGTTGCGTGCGA-----TTGG------ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GGAC-----GTTTG----GAGTTTTTA------AACGCTGT--AAATGCTTTATA--GAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCATGTGTAAGGT-TACGTCGACAAGATACGTATAT-A---------CTAACATTATATTTTG----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATACATC--------AAA--TC--CT-----CGTAGTCTACAACGAGGGAC--ATTACGGGAGGTCagaatattggttttggtggggaaatgattgagaggtgccttgcgtgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaaggacgtttggagtttttaaacgctgtaaatgctttatagagacgatatcagcaaactgacactgtttgggttcgcccatgtgtaaggttacgtcgacaagatacgtatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatacatcaaatcctcgtagtctacaacgagggacattacgggaggtctaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|5 : tagtaatcggttagatttttttgcatttgttgataatgttaaacgtattgaaacagaagaatattggttttggtggggaaTTCT-TTGACCGCTAGAAGTCTTCCTTAGAATCG-ATGGATAAG--AC--ATTGTGCCGTA----------AGAAACAGATTACGAGAGACCAA--CAT---CC-GTCCT---CAACGTCCTGCTATCCATCCATTTTCTGTTTCTGCGCTTAC-----CGC--------T----------------TTATACAAAACA--A--GCTTGGTGTTTGAAGGCATCGTCGTTTGGAATAA-AAGAG----------GAA-GTTCTACTTACAGACGAGTCGACATTTCATCTTGCGCAGCAACTCGCACGCG-TGGTCGTGTTCAGAGCTTA-CC-ATC--TGTCAAAGAACGTTAAAATGA-TGCCTG----TTTTATTCAG--CGCCAAACCA-A-TTGGCA------------------TGAGGTAGATATTACAACACATAAAGGAACTCATTT--------GGTTTTAGTGGAGGCA---ATTTAACCGACATACGCTTCGT----G----ATTCATGAGATTGTACGTCAGTACAGTATTCCAT----ACATTCACAACAACCAAGG--TATCGT--CATTCTGCAACACGACAACGCTCGAACACGCACTtaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|6 : TCT-TCGACCGCTAGAAGCACCCCTTGGCATCG-ACGGATAAG--TC--CTTGTGCCGTA----------AGGA-------------GGCCCA--CAT---CC-ATCTT---TGACGTCCTGCTTTCCGTCA------TGTT-CTACTCTGGAGTCACCGT--------G----------------TTG--CGAGGTTGCA--GCGTGGTGTA-TGAGGCAAATTTATTTC-AATAA-CAGAGATTGAG-T-GTAA-GGTCTGTTTACAGATGAGTCGAGATTTCATATCG-A-AGCA--------GTGACGGTCGTGCTC-GGACTTAGCT--TC-GTGTCGGAGAACTTTA----CACTG-ACGCCTACGTCATTCGGAAT-AT--TCTATATTTGGCGGAAGGAGTGTTCTC-GATTGTGCTGGA-ATGGCAACCCATGGAAGGACCC-TTTTGGTGATAG----TGATG--GACA---ATTTAACCAGCGAA-------C----G----A------A----------CTGCACACCATTTCAT----TCATTCACAACAACCAGCGTATAACGTCA-A-TGTGCAGCAGAGCAACGCACGAgc
gi|7 : aaAACTGTGTATAACT-A-AAT-GTTAAATACAC-GT-AA--GAA-AA----ATT-CTTTGTT-CGCTCTATAC--TATTAAAGGCA---T----AGT-CTA-ATA-TCCTAAATGTGTGTT---AGTACT--GAATTT-------------GTTCAATTCGCCTT----G-ATGAG-GCATAGCACGA----T-----TTTCT--------GGAATTTCGAG-AATAAACGACATGTGGTTA------GTT--GTC-GATTAGAATTTCTTGCATTTATTGACAGTGTT---CAGTGCATTGAAACAGA-----ccgc
gi|7 : gA-TG-ATTGAAATTGA-----TCTTTTGTGTATT-------A-----TTGG-----AATGC------------TGAAAGTT---AGGATACCT------------C------------ACATAAATGTGGCAAAGATGTTTG----GGGTTCATAT----TGAAAC--T--AAATGCTTTATG--AAGACGATGTCATCAAACTTA--GGTACCG-TGGGGACCGCCAACGATaaaaagtttttgaaataatattttgattgagagaggcctaggatgattgaaattgatcttttgtgtattattggaatgctgaaagttaggatacctcacataaatgtggcaaagatgtttggggttcatattgaaactaaatgctttatgaagacgatgtcatcaaacttaggtaccgtggggaccgccaacgata
gi|8 : gaactgtgtataactaaatgttaaatacacgtaagaaaaattctttgttcgctctatactattaaaggcatagtctaatatcctaaatgtgtgttagtactgaatttgttcaattcgccttgatgaggcatagcacgattttctggaatttcgagaataaacgacatgtggttagttgtcgattagaatttcttgcatttattgacagtgttcagtgcattgaaacagaaaaaagtttttgaaataatattttgattgagagaggcctaggAAAAGAAAATGTGTAT--TT-A-AAA-GTTAAATA----------------G---TATT-CTTTGAT-CACT-TTTGT--TATTAAAG--ATACT----AA-----------AC-AAACACGTGTTT-GAAT--------------------------TCGATCCTCCT-----GTAT--GGCCA----ACGCATGCT-----TTTCT--------GGAGTTGCGAG-CCTAAGCAACACGTCGTTACATGTAGTA--ATT-GGTTAGAATTCCTTGCATTCATTGACGATATT---TAATGTATTAAAACAGAAAAAATGGTTTATGGGCT-------AACATTTTGATGAGAAATGCCTCGCATACATTTGGGTGCTTTTGGGATGC-T------------G------------G-GCAA----GGCA-----AGTTA----GAGTTTAAAT----CAACACTGT--GAATGCTTTATG--GAGACGGCATCAGCAGACCGTGAGGCACCGCTTGAGATCGCGAACGATCGG---GA---ATACGTATAGCAT-TACGTCGGCAAGa
gi|9 : ga-----CGTA----------AGGAACACTTTGCGAGGGAACAA--CAT---CC-GTCCT---CATAGTCCTATTATCCGTCC------TGCT-ATATTAT--------TGCGTCAATGTG----------------TTG--TGAG--C--AACGCGTGGAGTA-GAA-----TGTCGTTTC-AATAA-CACAGCCTG-G-ATGGAA-TTTCTGTAAACGGACAATTTGAAATGTTATTTAG-ACAGCA--------GTTACAATTGTGTTT-GGGATCACTC--TT-GTGCCGTAGAATGTTT----CATTGT-CGCCTATGTTATTCAG--CTCC--ACCA-ATTTGACAGCGGGAGCGTTA-T-GTTTAGGGTGAA-ATTACAACACATG
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 1 11111111 3333333333 11 111111111 333333333333333333333333333333333 11111111 1111111 111 1 4444444444444 222222 222222222222 111 0000000000000000000000000000 1111 11111 1111 11111 1111 2222222222 5555555555555555555 1111 111 1 44444444444444444444444444444444444444 111111 999999999999999999999999999999999999 222222 333333333 222222 11111 4444444444 22222222 1 4444444444444 222222 55555555555555555 2222 11 111 1
lowQualScore : 4 0 999 55 0 99999999 999999 4 4 2 55 55 1 5555555555 4 4 4 4 00 3 5 333333333 1 888888888888888888888888888888888 66666666 4 4 4444444 55 3 0 2 111 9 4 3 88 99999 11 2222222222222 333333 999999999999 1 111 2222222222222222222222222222 5 0000 22222 0000 66666 55 0 66 1 4444 0 0 0 2 0 0000000000 55 5 1 3 1 4444444444444444444 6 0 7777 0 444 8 1 0 22 55555555555555555555555555555555555555 3 66 777 4 777 4 0 444444 77 1 333333333333333333333333333333333333 66 1 66 66 66 1 6 5 8888 4 444444 5 5 999 000000000 5 8 8 000000 1 8 88888 1 5555555555 8 0 22 44444444 8 1 1 0 0 0 7777777777777 111111 0 3 0 0 66666666666666666 2 2 0 0 1111 33 222 7 7 5
lowQualScore : . . ... .. . ........ ...... . . . .. .. . .......... . . . . .. . . ......... . ................................. ........ . . ....... .. . . . ... . . . .. ..... .. ............. ...... ............ . ... ............................ . .... ..... .... ..... .. . .. . .... . . . . . .......... .. . . . . ................... . . .... . ... . . . .. ...................................... . .. ... . ... . . ...... .. . .................................... .. . .. .. .. . . . .... . ...... . . ... ......... . . . ...... . . ..... . .......... . . .. ........ . . . . . . ............. ...... . . . . ................. . . . . .... .. ... . . .
lowQualScore : 2 0 444 22 1 33333333 333333 4 4 7 55 00 3 7777777777 4 4 4 8 66 7 7 444444444 6 888888888888888888888888888888888 11111111 4 7 1111111 00 6 3 7 000 2 5 6 00 11111 77 4444444444444 111111 333333333333 0 777 4444444444444444444444444444 7 6666 55555 6666 99999 55 1 11 0 0000 5 8 7 5 7 8888888888 22 0 7 0 8 5555555555555555555 0 6 0000 6 000 8 4 4 00 55555555555555555555555555555555555555 2 11 888 4 888 7 1 444444 55 1 888888888888888888888888888888888888 99 4 99 99 22 1 5 0 9999 9 444444 7 2 222 000000000 6 0 8 444444 0 0 22222 8 2222222222 0 8 00 88888888 0 0 0 2 8 0 5555555555555 222222 2 2 2 8 22222222222222222 5 5 2 8 2222 88 333 3 3 5
consensus : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----T-----TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAA-ACAGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACACTGT--AAATGCTTTATG--GAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATAT-A---------C-------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCGA-G-GATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCT--------CGC--------G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NA-GAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTT-ACA-TGTACGCCTGTGTTATTCAG--C-CC--GCCA-ATTTGGCGGAGGGAGCGTT-A-CG-TTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGG---TGATG--G---GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
Reference ( family-1268 ) : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----T-----TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAA-ACAGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACACTGT--AAATGCTTTATG--GAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATAT-A---------C-------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCGA-G-GATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCT--------CGC--------G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NA-GAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTT-ACA-TGTACGCCTATGTTATTCAG--C-CC--GCCA-ATTTGGCGGAGGGAGCGTT-A-CG-TTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGG---TGATG--G---GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
gi|1 : ATAAAAGAAACTGTTTAAA-CT-A-AAA-CCTAAATGAAA-AC-AA--AAA------CATC-CTCTGAT-CGCTCTTTAT--TCTTAAAGGCATACTTATTAGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACC--CAGTTTGTTAGATAT-TCTGTTTAATTCGCCTT---CG-AT--G-TCA----ACGA----T-----GTTCT--------GGAATTTCAAG-TGTAAGCGATACGTGGTTG------GCA--ATCTGATTAGAATTTTTTGCATTCATTGATAGTATT---CA-TG-ATTGAA-AAGGA-----TAGTCTGTGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATA--T-------------------------G-ACAA----GACA-----ATTTG----GCGTTCATAG----TAACACTTTTTAAATGCTTCATTTCGAGCCGTTTTCATTAAACT----GACACCGTTCTGGAACTTCAACAATCCG---GACGCCAACATGTAACGT-CACGTCGGCAAGACA------------------------------TTTG----CGTAATCCGTTT---AAATTG-CTTCT-GTGACCGCTAGAAGCATCCCTGGGCATCGA-AAGATAAG--TC--CT-----CGTA----------ATGAATAGATAGCGAAAGGCCAG--CAT---TC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTACTCT--------GGT--------G----------------TTC--CGATGCT--G--GTGGGGTGTG-GGAGGCATCGTC-TATC-AATAA-GAAGAGATTG-G-ACGGAG-GTTCGGTTTACAAACGAGTCGAGATTTCATCTCG-ACAGCT--------GTGACGGTCGTGCTC-GGGCTTGCCCTATTAGTGCCGCAGAATGTT-ACA-TGTAC---------ATTGA------C--GCCA-ATTCGGCAGAAGGGGCGTT-A-CGGTTTAGGATGGA-ATTACAATTCATGGAAAGACCC-TT---------A---TGATT--G---GCAATTTAACATGCGTACGCCAC----CGTGACA------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACTAACG--TAACGTCACATTCTGCAGAAGGAAAGCGCACG-AC-CGCACT
gi|10 : --AGATGCTTAATG--TAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---AACGCCCCTGTGTGACGT-CACATTGGCATGATACAGATTT-G---------C-------ATGTACGGAAATCACAATCGATTC---TAATCGGCTTCT-TTGA-CACTAGAAGCAACCCTGGGCATTGATG-GATAAGCATCGTAT-----TGTA----------AAGAACAGATTGAAAGATGCCAC--CAT---CC-ATCGT---CGACGTCATCTTATCC-TCA------CCTT---------------------------G----------------TTG--TGAGTTT--A--GTGTGGTACT-AAAGGCATGGTCATTCC-AAccacacgtgtcactctacagcagcagaatgagaatgtgctactttgtcctgcgatgtcacc
gi|11 : TCGACTCTTTTT---CA-CA--G-CCACAAAATGC----T-----TTTCT--------GGAATTAAGGG-CTTAAGAGACACGTGGCTA------GAA--ATA-TATCAGTGTTTCTTGCATTCATTGGCATTATT---AATTGTATTAAA-ACAGA-----c
gi|11 : ATA---CA-TG-GTCGGA-AATGT-----TTGTTTGCATGTT-------A-----TTGG-----GATGC------------TTGAAGCT---CGAGTG--TTGCAGAGTAATGT------------G-GCAA----GGCA-----AGTTGAGTTGAGTTTATATATGCTAACACTGT--CAATGaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccatacatggtcggaaatgtttgtttgcatgttattgggatgcttgaagctcgagtgttgcagagtaatgtggcaaggcaagttgagttgagtttatatatgctaacactgtcaatg
gi|12 : tcgactctttttcacagccacaaaatgcttttctggaattaagggcttaagagacacgtggctagaaatatatcagtgtttcttgcattcattggcattattaattgtattaaaacagaaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccAGAACAAACAGTCTACAATT-A-ACA-ATTAGACCAAA--C-AT--AAA-AG---TTTTGTTTTTAT-CACTGCTCAT--ACTTAATGGCACATT--------CTATATA-GAATATACACATGTTT-GGTTACT--CAGTTTGTTAAATATACATTTTCGATTCGC-TA---CG-AT--G-TCC----ATGG----TACTTATTGCT--------GGAGTTTCGAG-CCAACGCAACACGTCGTCA------TCA--ATC-AGTTAGATTGTCTTGCATTTATTTACATTATT---CA-
gi|13 : ACAAAAGAGACCGTGTATA-CTTG-AAA-GTGAAATAAAA-AT-ATTAAAA-AG---TATT-CTTTGAT-CACTCTGTAT--TCTTAAAGGGATA-------GT-TTA-ATG-TACTAAATGCAAGTTT-CAGTACA--CAATTTGTTAAATGT-CA------ATTCGTCTTGCATG-AT--G-GCA----ACAG----CACAA-TTTCT--------TGAGTTTCGAT-CCTCAACGACAGGTGTTTA------GTA--ATC-GATTAGAATTTCTAGC
gi|14 : TAT--TTCAAAAGGCATA-------AT-TTA-ATA-TACTGAACGCGTGTTT-GAGTACT--CAGTATGTTAAATAT-CGCGTTCAATTCACCTT----G-AT--GACCACAACACGT----T-----CTTCT--------GGAATGTCGAA-CTTAAGCGACACGTGGTGA------GTA--ATC-GACACGGATTT-TTGCATTCATGGAAAATA
gi|15 : ATAAG--TC--CT-----CGTACTGTA-----AGGAACAGAATGCAAGAGGCAAA--CCT---CC-GTTCTGTTC--CGTTCTCGTATCCGTCC------TGTT-CTGATGT--------CACCGT-----G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCACCGTC------------------------------A-ATTCTATTTACGGACGAATCGAGATATCATCTCG-GCacagaaaaacgtctgt
gi|16 : cgacgtAA----GGAA-----GT--G----AAGTTCATAT----TAACACTGT--CAATGCTTTATG--GAGATGATATCAGCAAACT----GGCACCATTTGAGACCGTCCAGGATCAG---GACGCCC-CGCGT--------CGTCGGTAAGATACATATAT-G---------T-------ATATg
gi|17 : gcaAAGAAATTATGTATA-CT-T-AAA-ATTCAATAAAACAT-AA--AAA-GG---TATT-TCTTGAT-AACTCTTTATACTTTTAAAAG---AC-----AGT-TTA-ATA-TACT-AATGCGTGTTT-GAATACTGACA-TTTGTTAAATAT-CGCGTTCGATTC-TTTT---TG-ATG-G-CCA----ggatgtcacattagcacaaccga
gi|18 : T-AT--AAACAG---TATT-CTTCGGT-C--TCTCTAC--TCTTAGAGGCATA-------AC-TTG-ATAATACTAAACGAGTGTTT-GAGTTCT--CAATTTATTAGATAT-CGTGTTCGATTCGCCTT---g
gi|19 : atactagtgtataaaatgcgtattctt---CA-TA-ATTGAATATA-A-----TCGTCTGTGTGTT-------A-----TTGA-----GATGC------------Tggt
gi|19 : attcatattcatattctgttgaatattgatgaggagagttctcg--AGATGCTTAATG--TAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCtaatgtagacaatagcagcaaactggcaccgttcgggaccgcccacgatc
gi|2 : attcatattcatattctgttgaatattgatgaggagagttctcgcataattgaatataatcgtctgtgtgttattgAAATCGAGGATA-CT-A-AAAAGTTAAATAAAACATTAA--AAA-AG---TATT-CTTCAATTCGCTCTTTAT--TCTTGAAG---CGGT----AGTCTTA-ATG-T-CTAAAAGCGTGTTTCAAGT--TA-CAGTTT-CTAA------GCATTCGATTTGTCTTG--CT-AG--C-CCT----ACGC----TTGC--TTTCTATAGACTCGGAATTATGTGACCAAAAC-ACAAGTGGTT-------GTATGCTA-GATT---TTTTTTTGCATTTATTGATAATGTTA--AA-TGTATTGAA-ACAGA-----
gi|2 : agcagaA-TG-ATTGAG-A--GG-----TGCCTTGCATGTTGCGTGCGA-----TTGG------ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GAAC-----GTTTG----GAGTTTTTA------AACGTTGT--AAATGCTTCATA--GAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCAAGTGTAACGT-TACGCCGACAAGATACGTATAT-ATACTAACATT-------ATATTTTG----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATATATC--------AAA--TT--CT-----TGTAGCCTACAACGAGGGAC--ATTACGGGAGG-------------------T---CTAGGTCCCACTGTCCGTTC------TGTC-CTGCTCT--------CGT--------GTCATCGTGTGATCATATTG--GGAGGTT--A--GCTTGGTTTG-GTAGGCATCGTCGTTTC-AATAGCAA-GAGATTG-GAA-GGAA-GCTTTGTTAACAGAGTAGTTGAGagaatattggttttggtgggggaaatgattgagaggtgccttgcatgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaagaacgtttggagtttttaaacgttgtaaatgcttcatagagacgatatcagcaaactgacactgtttgggttcgcccaagtgtaacgttacgccgacaagatacgtatatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatatatcaaattcttgtagcctacaacgagggacattacgggaggtctaggtcccactgtccgttctgtcctgctctcgtgtcatcgtgtgatcatattgggaggttagcttggtttggtaggcatcgtcgtttcaatagcaagagattggaaggaagctttgttaacagagtagttgagtctc
gi|20 : agcagaaaatcgaggatactaaaaagttaaataaaacattaaaaaagtattcttcaattcgctctttattcttgaagcggtagtcttaatgtctaaaagcgtgtttcaagttacagtttctaagcattcgatttgtcttgctagccctacgcttgctttctatagactcggaattatgtgaccaaaacacaagtggttgtatgctagatttttttttgcatttattgataatgttaaatgtattgaaacagaagaatattggttttggtgggggaaATG---------------C------------G-ACAA----AGCA-----GCTTG----GAGTTCATTT----TAAAACTTT--AAATGCTATATA--GAGATG-TAT--GCAAACT----GGCACCGTTCTGGACTGACCACAA------------CCGCGAGTAACGT-CACtctc
gi|21 : ttggatggcataaagcaAGAAACGTTGTATA-CT-TTAAA-CTTAGATAAAA-GC-AT--AAA-AAGTATATT-CTTTGAT-CGCTCTTCAT--TCTTATAGTCAT
gi|22 : aatggaaaacg-----CGTA----------CAGAACAGATTACGAGAGGCCGAATCATAAACCGGTCCT---CTACATTCTGCTACCCGTggtattatg
gi|23 : ----ACGC----T-----TTTCT--------GGCGTTTCGAG-C-TAAGCGACACGTGGCTT------GTA--ATC-tactccgtttctaacgcttgat
gi|24 : agaacGTT-------GTA--ATC-GATTAAAATGTCTTGCATTCATTGGCAGTATT---CA-acaggg
gi|3 : aATCAGCAAGCT----GGCACCGTTTGGGACCGCCCACCATCAGTTTGACA-------GTAAGATACATGTACGTATAA-ACGGACGTCA---------C-------ATAT---G----CATAATAACTTCTTAGA---GGCTTCT-TTGACTGCTGGAAACATCCGTACACAT----G-TACA----------------GTA----------AGGAACAGATTGAGAGATGCCAA--TTT---CC-GTCCT---TGACGTTCTGCAATC-----------------TACTCT--------GGC--------GACAATATG--------TTT--CGAGGTT--A--GCGTGGTGTA-GAGGACATCGTCGTTTC-AATAA-CA-GAAATTG-G-G-CGAACGTTCTTTTTATGAACAATTCGAGATTTCATCT---------------------------TGTTC-GGGGTTAACC-ATT-ATGCCGGAGATTGTT-ACA-TTGACGACTGTGTTATTGAA--TACC--GCCA-ATTTCGAGGAGGGAGCATTAA-AG-TATGGAGTTTA-ATAACTACACATGCACGGACCC-TT-------TGG---TGATG--GGGAGGAATTTAACCGACGTATGCTACCCTGCG----A------AGATTGTACTTCAGGACGTCAATCCATCCACTCATTCACAATAAGCAGCG--atgtatt
gi|4 : TA------GTA--ATC-GGTTAGATTTTTTTGCATTTGTTGATAATGTTAAACG-T--ATTGAA-ACAGA-----aatttgcagattcaagctgc
gi|4 : A-TG-ATTGAG-A--GG-----TGCCTTGCGTGTTGCGTGCGA-----TTGG------ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GGAC-----GTTTG----GAGTTTTTA------AACGCTGT--AAATGCTTTATA--GAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCATGTGTAAGGT-TACGTCGACAAGATACGTATAT-A---------CTAACATTATATTTTG----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATACATC--------AAA--TC--CT-----CGTAGTCTACAACGAGGGAC--ATTACGGGAGGTCagaatattggttttggtggggaaatgattgagaggtgccttgcgtgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaaggacgtttggagtttttaaacgctgtaaatgctttatagagacgatatcagcaaactgacactgtttgggttcgcccatgtgtaaggttacgtcgacaagatacgtatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatacatcaaatcctcgtagtctacaacgagggacattacgggaggtctaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|5 : tagtaatcggttagatttttttgcatttgttgataatgttaaacgtattgaaacagaagaatattggttttggtggggaaTTCT-TTGACCGCTAGAAGTCTTCCTTAGAATCGATG-GATAAG--AC--ATTGTGCCGTA----------AGAAACAGATTACGAGAGACCAA--CAT---CC-GTCCT---CAACGTCCTGCTATCCATCCATTTTCTGTTTCTGCGCTTAC-----CGC--------T----------------TTATACAAAACA--A--GCTTGGTGTTTGAAGGCATCGTCGTTTGGAATAA-AA-GAG----------GAA-GTTCTACTTACAGACGAGTCGACATTTCATCTTGCGCAGCAACTCGCACGCG-TGGTCGTGTTCAGAGCTTA-CC-ATC--TGTCAAAGAACGTTAAAA-TG-ATGCCTGTTTTATTCAG--CGCCAAACCA-A-TTGGCA-------------------TGAGGTAGATATTACAACACATAAAGGAACTCATT-------TGGTTTTAGTGGAG---GCAATTTAACCGACATACGCTTCG---TG----ATTCATGAGATTGTACGTCAGTACAGTATTCCAT----ACATTCACAACAACCAAGG--TATCGT--CATTCTGCAACACGACAACGCTCGAACACGCACTtaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|6 : TCT-TCGACCGCTAGAAGCACCCCTTGGCATCGACG-GATAAG--TC--CTTGTGCCGTA----------AGGA-------------GGCCCA--CAT---CC-ATCTT---TGACGTCCTGCTTTCCGTCA------TGTT-CTACTCTGGAGTCACCGT--------G----------------TTG--CGAGGTTGCA--GCGTGGTGTA-TGAGGCAAATTTATTTC-AATAA-CA-GAGATTGAG-T-GTAA-GGTCTGTTTACAGATGAGTCGAGATTTCATATCG-A-AGCA--------GTGACGGTCGTGCTC-GGACTTAGCT--TC-GTGTCGGAGAACTTT-ACACTG-ACGCCTACGTCATTCGGAAT-AT--TCTATATTTGGCGGAAGGAGTGTT-CTCG-ATTGTGCTGGA-ATGGCAACCCATGGAAGGACCC-TTTTGGTGATAG---TGATG--G---ACAATTTAACCAGCG------AA----CG----A------A----------CTGCACACCATTTCAT----TCATTCACAACAACCAGCGTATAACGTCA-A-TGTGCAGCAGAGCAACGCACGAgc
gi|7 : aaAACTGTGTATAACT-A-AAT-GTTAAATACAC-GT-AA--GAA-AA----ATT-CTTTGTT-CGCTCTATAC--TATTAAAGGCA---T----AGT-CTA-ATA-TCCTAAATGTGTGTT---AGTACT--GAATTT-------------GTTCAATTCGCCTT----G-ATGAG-GCATAGCACGA----T-----TTTCT--------GGAATTTCGAG-AATAAACGACATGTGGTTA------GTT--GTC-GATTAGAATTTCTTGCATTTATTGACAGTGTT---CAGTGCATTGAA-ACAGA-----ccgc
gi|7 : gA-TG-ATTGAA-ATTGA-----TCTTTTGTGTATT-------A-----TTGG-----AATGC------------TGAAAGTT---AGGATACCT------------C------------ACATAAATGTGGCAAAGATGTTTG----GGGTTCATAT----TGAAAC--T--AAATGCTTTATG--AAGACGATGTCATCAAACTTA--GGTACCG-TGGGGACCGCCAACGATaaaaagtttttgaaataatattttgattgagagaggcctaggatgattgaaattgatcttttgtgtattattggaatgctgaaagttaggatacctcacataaatgtggcaaagatgtttggggttcatattgaaactaaatgctttatgaagacgatgtcatcaaacttaggtaccgtggggaccgccaacgata
gi|8 : gaactgtgtataactaaatgttaaatacacgtaagaaaaattctttgttcgctctatactattaaaggcatagtctaatatcctaaatgtgtgttagtactgaatttgttcaattcgccttgatgaggcatagcacgattttctggaatttcgagaataaacgacatgtggttagttgtcgattagaatttcttgcatttattgacagtgttcagtgcattgaaacagaaaaaagtttttgaaataatattttgattgagagaggcctaggAAAAGAAAATGTGTAT--TT-A-AAA-GTTAAATA----------------G---TATT-CTTTGAT-CACT-TTTGT--TATTAAAG--ATACT----AA-----------AC-AAACACGTGTTT-GAAT--------------------------TCGATCCTCCT-----GTAT--GGCCA----ACGCATGCT-----TTTCT--------GGAGTTGCGAG-CCTAAGCAACACGTCGTTACATGTAGTA--ATT-GGTTAGAATTCCTTGCATTCATTGACGATATT---TAATGTATTAAA-ACAGAAAAAATGGTTTATGGGCT-------AACATTTTGATGAGAAATGCCTCGCATACATTTGGGTGCTTTTGGGATGC-T------------G------------G-GCAA----GGCA-----AGTTA----GAGTTTAAAT----CAACACTGT--GAATGCTTTATG--GAGACGGCATCAGCAGACCGTGAGGCACCGCTTGAGATCGCGAACGATCGG---GA---ATACGTATAGCAT-TACGTCGGCAAGa
gi|9 : ga-----CGTA----------AGGAACACTTTGCGAGGGAACAA--CAT---CC-GTCCT---CATAGTCCTATTATCCGTCC------TGCT-ATATTAT--------TGCGTCAATGTG----------------TTG--TGAG--C--AACGCGTGGAGTA-GAA-----TGTCGTTTC-AATAA-CA-CAGCCTG-G-ATGGAA-TTTCTGTAAACGGACAATTTGAAATGTTATTTAG-ACAGCA--------GTTACAATTGTGTTT-GGGATCACTC--TT-GTGCCGTAGAATGTT-TCATTGT-CGCCTATGTTATTCAG--CTCC--ACCA-ATTTGACAGCGGGAGCGTT-A-TG-TTTAGGGTGAA-ATTACAACACATG
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 1 11111111 3333333333 11 111111111 333333333333333333333333333333333 11111111 1111111 111 1 4444444444444 222222 222222222222 111 0000000000000000000000000000 1111 11111 1111 11111 1111 2222222222 5555555555555555555 1111 111 1 44444444444444444444444444444444444444 111111 999999999999999999999999999999999999 11 222222 333333333 222222 11111 4444444444 22222 1 4444444444444 222222 55555555555555555 2222 11 111 1
lowQualScore : 4 0 999 55 0 99999999 999999 4 4 2 55 55 1 5555555555 4 4 4 4 00 3 5 333333333 1 888888888888888888888888888888888 66666666 4 4 4444444 55 3 0 2 111 9 4 3 88 99999 11 2222222222222 333333 999999999999 1 111 2222222222222222222222222222 5 0000 22222 0000 66666 66 0 66 1 4444 0 0 0 2 0 0000000000 55 5 1 3 1 4444444444444444444 6 0 7777 0 444 8 1 0 22 55555555555555555555555555555555555555 3 66 777 4 777 4 0 444444 77 1 333333333333333333333333333333333333 66 1 66 66 66 1 6 5 44 4 444444 5 5 999 000000000 5 8 8 000000 1 8 88888 1 5555555555 8 0 22 77777 22 8 1 1 0 0 0 7777777777777 111111 0 3 0 0 66666666666666666 2 2 0 0 1111 33 222 7 7 5
lowQualScore : . . ... .. . ........ ...... . . . .. .. . .......... . . . . .. . . ......... . ................................. ........ . . ....... .. . . . ... . . . .. ..... .. ............. ...... ............ . ... ............................ . .... ..... .... ..... .. . .. . .... . . . . . .......... .. . . . . ................... . . .... . ... . . . .. ...................................... . .. ... . ... . . ...... .. . .................................... .. . .. .. .. . . . .. . ...... . . ... ......... . . . ...... . . ..... . .......... . . .. ..... .. . . . . . . ............. ...... . . . . ................. . . . . .... .. ... . . .
lowQualScore : 2 0 444 22 1 33333333 333333 4 4 7 55 00 3 7777777777 4 4 4 8 66 7 7 444444444 6 888888888888888888888888888888888 11111111 4 7 1111111 00 6 3 7 000 2 5 6 00 11111 77 4444444444444 111111 333333333333 0 777 4444444444444444444444444444 7 6666 55555 6666 99999 99 1 11 0 0000 5 8 7 5 7 8888888888 22 0 7 0 8 5555555555555555555 0 6 0000 6 000 8 4 4 00 55555555555555555555555555555555555555 2 11 888 4 888 7 1 444444 55 1 888888888888888888888888888888888888 99 4 99 99 22 1 5 0 44 9 444444 7 2 222 000000000 6 0 8 444444 0 0 22222 4 2222222222 0 8 00 88888 00 0 0 0 2 8 0 5555555555555 222222 2 2 2 8 22222222222222222 5 5 2 8 2222 88 333 3 3 5
consensus : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----T-----TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAA-ACAGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACAC--TGTAAATGCTTTA--TGGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATAT-A---------C-------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCG-A-GGATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCT--------CGC--------G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NAGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTT-ACA-TGTACGCCTGTGTTATTCAG--C-CC--GCCA-ATTTGGCGGAGGGAGCGTT-A-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGG---TGATG--G---GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
Reference ( family-1268 ) : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----T-----TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAA-ACAGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACAC--TGTAAATGCTTTA--TGGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATAT-A---------C-------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCG-A-GGATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCT--------CGC--------G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NAGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTT-ACA-TGTACGCCTGTGTTATTCAG--C-CC--GCCA-ATTTGGCGGAGGGAGCGTT-A-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGG---TGATG--G---GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
gi|1 : ATAAAAGAAACTGTTTAAA-CT-A-AAA-CCTAAATGAAA-AC-AA--AAA------CATC-CTCTGAT-CGCTCTTTAT--TCTTAAAGGCATACTTATTAGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACC--CAGTTTGTTAGATAT-TCTGTTTAATTCGCCTT---CG-AT--G-TCA----ACGA----T-----GTTCT--------GGAATTTCAAG-TGTAAGCGATACGTGGTTG------GCA--ATCTGATTAGAATTTTTTGCATTCATTGATAGTATT---CA-TG-ATTGAA-AAGGA-----TAGTCTGTGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATA--T-------------------------G-ACAA----GACA-----ATTTG----GCGTTCATAG----TAACACTTTTTAAATGCTTCATTTCGAGCCGTTTTCATTAAACT----GACACCGTTCTGGAACTTCAACAATCCG---GACGCCAACATGTAACGT-CACGTCGGCAAGACA------------------------------TTTG----CGTAATCCGTTT---AAATT-GCTTCT-GTGACCGCTAGAAGCATCCCTGGGCATCGAA-AGATAAG--TC--CT-----CGTA----------ATGAATAGATAGCGAAAGGCCAG--CAT---TC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTACTCT--------GGT--------G----------------TTC--CGATGCT--G--GTGGGGTGTG-GGAGGCATCGTC-TATC-AATAAGAAGAGATTG-G-ACGGAG-GTTCGGTTTACAAACGAGTCGAGATTTCATCTCG-ACAGCT--------GTGACGGTCGTGCTC-GGGCTTGCCCTATTAGTGCCGCAGAATGTT-ACA-TGTAC---------ATTGA------C--GCCA-ATTCGGCAGAAGGGGCGTT-A-CGGTTTAGGATGGA-ATTACAATTCATGGAAAGACCC-TT---------A---TGATT--G---GCAATTTAACATGCGTACGCCAC----CGTGACA------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACTAACG--TAACGTCACATTCTGCAGAAGGAAAGCGCACG-AC-CGCACT
gi|10 : AGATGCTTAA--TGTAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---AACGCCCCTGTGTGACGT-CACATTGGCATGATACAGATTT-G---------C-------ATGTACGGAAATCACAATCGATTC---TAATCGGCTTCT-TTGA-CACTAGAAGCAACCCTGGGCATTG-ATGGATAAGCATCGTAT-----TGTA----------AAGAACAGATTGAAAGATGCCAC--CAT---CC-ATCGT---CGACGTCATCTTATCC-TCA------CCTT---------------------------G----------------TTG--TGAGTTT--A--GTGTGGTACT-AAAGGCATGGTCATTCC-AAccacacgtgtcactctacagcagcagaatgagaatgtgctactttgtcctgcgatgtcacc
gi|11 : TCGACTCTTTTT---CA-CA--G-CCACAAAATGC----T-----TTTCT--------GGAATTAAGGG-CTTAAGAGACACGTGGCTA------GAA--ATA-TATCAGTGTTTCTTGCATTCATTGGCATTATT---AATTGTATTAAA-ACAGA-----c
gi|11 : ATA---CA-TG-GTCGGA-AATGT-----TTGTTTGCATGTT-------A-----TTGG-----GATGC------------TTGAAGCT---CGAGTG--TTGCAGAGTAATGT------------G-GCAA----GGCA-----AGTTGAGTTGAGTTTATATATGCTAACAC--TGTCAATGaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccatacatggtcggaaatgtttgtttgcatgttattgggatgcttgaagctcgagtgttgcagagtaatgtggcaaggcaagttgagttgagtttatatatgctaacactgtcaatg
gi|12 : tcgactctttttcacagccacaaaatgcttttctggaattaagggcttaagagacacgtggctagaaatatatcagtgtttcttgcattcattggcattattaattgtattaaaacagaaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccAGAACAAACAGTCTACAATT-A-ACA-ATTAGACCAAA--C-AT--AAA-AG---TTTTGTTTTTAT-CACTGCTCAT--ACTTAATGGCACATT--------CTATATA-GAATATACACATGTTT-GGTTACT--CAGTTTGTTAAATATACATTTTCGATTCGC-TA---CG-AT--G-TCC----ATGG----TACTTATTGCT--------GGAGTTTCGAG-CCAACGCAACACGTCGTCA------TCA--ATC-AGTTAGATTGTCTTGCATTTATTTACATTATT---CA-
gi|13 : ACAAAAGAGACCGTGTATA-CTTG-AAA-GTGAAATAAAA-AT-ATTAAAA-AG---TATT-CTTTGAT-CACTCTGTAT--TCTTAAAGGGATA-------GT-TTA-ATG-TACTAAATGCAAGTTT-CAGTACA--CAATTTGTTAAATGT-CA------ATTCGTCTTGCATG-AT--G-GCA----ACAG----CACAA-TTTCT--------TGAGTTTCGAT-CCTCAACGACAGGTGTTTA------GTA--ATC-GATTAGAATTTCTAGC
gi|14 : TAT--TTCAAAAGGCATA-------AT-TTA-ATA-TACTGAACGCGTGTTT-GAGTACT--CAGTATGTTAAATAT-CGCGTTCAATTCACCTT----G-AT--GACCACAACACGT----T-----CTTCT--------GGAATGTCGAA-CTTAAGCGACACGTGGTGA------GTA--ATC-GACACGGATTT-TTGCATTCATGGAAAATA
gi|15 : ATAAG--TC--CT-----CGTACTGTA-----AGGAACAGAATGCAAGAGGCAAA--CCT---CC-GTTCTGTTC--CGTTCTCGTATCCGTCC------TGTT-CTGATGT--------CACCGT-----G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCACCGTC-----------------------------A-ATTCTATTTACGGACGAATCGAGATATCATCTCG-GCacagaaaaacgtctgt
gi|16 : cgacgtAA----GGAA-----GT--G----AAGTTCATAT----TAACAC--TGTCAATGCTTTA--TGGAGATGATATCAGCAAACT----GGCACCATTTGAGACCGTCCAGGATCAG---GACGCCC-CGCGT--------CGTCGGTAAGATACATATAT-G---------T-------ATATg
gi|17 : gcaAAGAAATTATGTATA-CT-T-AAA-ATTCAATAAAACAT-AA--AAA-GG---TATT-TCTTGAT-AACTCTTTATACTTTTAAAAG---AC-----AGT-TTA-ATA-TACT-AATGCGTGTTT-GAATACTGACA-TTTGTTAAATAT-CGCGTTCGATTC-TTTT---TG-ATG-G-CCA----ggatgtcacattagcacaaccga
gi|18 : T-AT--AAACAG---TATT-CTTCGGT-C--TCTCTAC--TCTTAGAGGCATA-------AC-TTG-ATAATACTAAACGAGTGTTT-GAGTTCT--CAATTTATTAGATAT-CGTGTTCGATTCGCCTT---g
gi|19 : atactagtgtataaaatgcgtattctt---CA-TA-ATTGAATATA-A-----TCGTCTGTGTGTT-------A-----TTGA-----GATGC------------Tggt
gi|19 : attcatattcatattctgttgaatattgatgaggagagttctcgAGATGCTTAA--TGTAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCtaatgtagacaatagcagcaaactggcaccgttcgggaccgcccacgatc
gi|2 : attcatattcatattctgttgaatattgatgaggagagttctcgcataattgaatataatcgtctgtgtgttattgAAATCGAGGATA-CT-A-AAAAGTTAAATAAAACATTAA--AAA-AG---TATT-CTTCAATTCGCTCTTTAT--TCTTGAAG---CGGT----AGTCTTA-ATG-T-CTAAAAGCGTGTTTCAAGT--TA-CAGTTT-CTAA------GCATTCGATTTGTCTTG--CT-AG--C-CCT----ACGC----TTGC--TTTCTATAGACTCGGAATTATGTGACCAAAAC-ACAAGTGGTT-------GTATGCTA-GATT---TTTTTTTGCATTTATTGATAATGTTA--AA-TGTATTGAA-ACAGA-----
gi|2 : agcagaA-TG-ATTGAG-A--GG-----TGCCTTGCATGTTGCGTGCGA-----TTGG------ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GAAC-----GTTTG----GAGTTTTTA------AACGT--TGTAAATGCTTCA--TAGAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCAAGTGTAACGT-TACGCCGACAAGATACGTATAT-ATACTAACATT-------ATATTTTG----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATATATC--------AAA--TT--CT-----TGTAGCCTACAACGAGGGAC--ATTACGGGAGG-------------------T---CTAGGTCCCACTGTCCGTTC------TGTC-CTGCTCT--------CGT--------GTCATCGTGTGATCATATTG--GGAGGTT--A--GCTTGGTTTG-GTAGGCATCGTCGTTTC-AATAGCAAGAGATTG-GAA-GGAA-GCTTTGTTAACAGAGTAGTTGAGagaatattggttttggtgggggaaatgattgagaggtgccttgcatgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaagaacgtttggagtttttaaacgttgtaaatgcttcatagagacgatatcagcaaactgacactgtttgggttcgcccaagtgtaacgttacgccgacaagatacgtatatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatatatcaaattcttgtagcctacaacgagggacattacgggaggtctaggtcccactgtccgttctgtcctgctctcgtgtcatcgtgtgatcatattgggaggttagcttggtttggtaggcatcgtcgtttcaatagcaagagattggaaggaagctttgttaacagagtagttgagtctc
gi|20 : agcagaaaatcgaggatactaaaaagttaaataaaacattaaaaaagtattcttcaattcgctctttattcttgaagcggtagtcttaatgtctaaaagcgtgtttcaagttacagtttctaagcattcgatttgtcttgctagccctacgcttgctttctatagactcggaattatgtgaccaaaacacaagtggttgtatgctagatttttttttgcatttattgataatgttaaatgtattgaaacagaagaatattggttttggtgggggaaATG---------------C------------G-ACAA----AGCA-----GCTTG----GAGTTCATTT----TAAAAC--TTTAAATGCTATA--TAGAGATG-TAT--GCAAACT----GGCACCGTTCTGGACTGACCACAA------------CCGCGAGTAACGT-CACtctc
gi|21 : ttggatggcataaagcaAGAAACGTTGTATA-CT-TTAAA-CTTAGATAAAA-GC-AT--AAA-AAGTATATT-CTTTGAT-CGCTCTTCAT--TCTTATAGTCAT
gi|22 : aatggaaaacg-----CGTA----------CAGAACAGATTACGAGAGGCCGAATCATAAACCGGTCCT---CTACATTCTGCTACCCGTggtattatg
gi|23 : ----ACGC----T-----TTTCT--------GGCGTTTCGAG-C-TAAGCGACACGTGGCTT------GTA--ATC-tactccgtttctaacgcttgat
gi|24 : agaacGTT-------GTA--ATC-GATTAAAATGTCTTGCATTCATTGGCAGTATT---CA-acaggg
gi|3 : aATCAGCAAGCT----GGCACCGTTTGGGACCGCCCACCATCAGTTTGACA-------GTAAGATACATGTACGTATAA-ACGGACGTCA---------C-------ATAT---G----CATAATAACTTCTTAGA---GGCTTCT-TTGACTGCTGGAAACATCCGTACACAT-----GTACA----------------GTA----------AGGAACAGATTGAGAGATGCCAA--TTT---CC-GTCCT---TGACGTTCTGCAATC-----------------TACTCT--------GGC--------GACAATATG--------TTT--CGAGGTT--A--GCGTGGTGTA-GAGGACATCGTCGTTTC-AATAA-CAGAAATTG-G-G-CGAACGTTCTTTTTATGAACAATTCGAGATTTCATCT---------------------------TGTTC-GGGGTTAACC-ATT-ATGCCGGAGATTGTT-ACA-TTGACGACTGTGTTATTGAA--TACC--GCCA-ATTTCGAGGAGGGAGCATTAA-A-GTATGGAGTTTA-ATAACTACACATGCACGGACCC-TT-------TGG---TGATG--GGGAGGAATTTAACCGACGTATGCTACCCTGCG----A------AGATTGTACTTCAGGACGTCAATCCATCCACTCATTCACAATAAGCAGCG--atgtatt
gi|4 : TA------GTA--ATC-GGTTAGATTTTTTTGCATTTGTTGATAATGTTAAACG-T--ATTGAA-ACAGA-----aatttgcagattcaagctgc
gi|4 : A-TG-ATTGAG-A--GG-----TGCCTTGCGTGTTGCGTGCGA-----TTGG------ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GGAC-----GTTTG----GAGTTTTTA------AACGC--TGTAAATGCTTTA--TAGAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCATGTGTAAGGT-TACGTCGACAAGATACGTATAT-A---------CTAACATTATATTTTG----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATACATC--------AAA--TC--CT-----CGTAGTCTACAACGAGGGAC--ATTACGGGAGGTCagaatattggttttggtggggaaatgattgagaggtgccttgcgtgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaaggacgtttggagtttttaaacgctgtaaatgctttatagagacgatatcagcaaactgacactgtttgggttcgcccatgtgtaaggttacgtcgacaagatacgtatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatacatcaaatcctcgtagtctacaacgagggacattacgggaggtctaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|5 : tagtaatcggttagatttttttgcatttgttgataatgttaaacgtattgaaacagaagaatattggttttggtggggaaTTCT-TTGACCGCTAGAAGTCTTCCTTAGAATCG-ATGGATAAG--AC--ATTGTGCCGTA----------AGAAACAGATTACGAGAGACCAA--CAT---CC-GTCCT---CAACGTCCTGCTATCCATCCATTTTCTGTTTCTGCGCTTAC-----CGC--------T----------------TTATACAAAACA--A--GCTTGGTGTTTGAAGGCATCGTCGTTTGGAATAA-AAGAG----------GAA-GTTCTACTTACAGACGAGTCGACATTTCATCTTGCGCAGCAACTCGCACGCG-TGGTCGTGTTCAGAGCTTA-CC-ATC--TGTCAAAGAACGTTAAAA-TG-ATGCCTGTTTTATTCAG--CGCCAAACCA-A-TTGGCA-------------------TGAGGTAGATATTACAACACATAAAGGAACTCATT-------TGGTTTTAGTGGAG---GCAATTTAACCGACATACGCTTCG---TG----ATTCATGAGATTGTACGTCAGTACAGTATTCCAT----ACATTCACAACAACCAAGG--TATCGT--CATTCTGCAACACGACAACGCTCGAACACGCACTtaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|6 : TCT-TCGACCGCTAGAAGCACCCCTTGGCATCG-ACGGATAAG--TC--CTTGTGCCGTA----------AGGA-------------GGCCCA--CAT---CC-ATCTT---TGACGTCCTGCTTTCCGTCA------TGTT-CTACTCTGGAGTCACCGT--------G----------------TTG--CGAGGTTGCA--GCGTGGTGTA-TGAGGCAAATTTATTTC-AATAA-CAGAGATTGAG-T-GTAA-GGTCTGTTTACAGATGAGTCGAGATTTCATATCG-A-AGCA--------GTGACGGTCGTGCTC-GGACTTAGCT--TC-GTGTCGGAGAACTTT-ACACTG-ACGCCTACGTCATTCGGAAT-AT--TCTATATTTGGCGGAAGGAGTGTT-CTC-GATTGTGCTGGA-ATGGCAACCCATGGAAGGACCC-TTTTGGTGATAG---TGATG--G---ACAATTTAACCAGCG------AA----CG----A------A----------CTGCACACCATTTCAT----TCATTCACAACAACCAGCGTATAACGTCA-A-TGTGCAGCAGAGCAACGCACGAgc
gi|7 : aaAACTGTGTATAACT-A-AAT-GTTAAATACAC-GT-AA--GAA-AA----ATT-CTTTGTT-CGCTCTATAC--TATTAAAGGCA---T----AGT-CTA-ATA-TCCTAAATGTGTGTT---AGTACT--GAATTT-------------GTTCAATTCGCCTT----G-ATGAG-GCATAGCACGA----T-----TTTCT--------GGAATTTCGAG-AATAAACGACATGTGGTTA------GTT--GTC-GATTAGAATTTCTTGCATTTATTGACAGTGTT---CAGTGCATTGAA-ACAGA-----ccgc
gi|7 : gA-TG-ATTGAA-ATTGA-----TCTTTTGTGTATT-------A-----TTGG-----AATGC------------TGAAAGTT---AGGATACCT------------C------------ACATAAATGTGGCAAAGATGTTTG----GGGTTCATAT----TGAAAC----TAAATGCTTTA--TGAAGACGATGTCATCAAACTTA--GGTACCG-TGGGGACCGCCAACGATaaaaagtttttgaaataatattttgattgagagaggcctaggatgattgaaattgatcttttgtgtattattggaatgctgaaagttaggatacctcacataaatgtggcaaagatgtttggggttcatattgaaactaaatgctttatgaagacgatgtcatcaaacttaggtaccgtggggaccgccaacgata
gi|8 : gaactgtgtataactaaatgttaaatacacgtaagaaaaattctttgttcgctctatactattaaaggcatagtctaatatcctaaatgtgtgttagtactgaatttgttcaattcgccttgatgaggcatagcacgattttctggaatttcgagaataaacgacatgtggttagttgtcgattagaatttcttgcatttattgacagtgttcagtgcattgaaacagaaaaaagtttttgaaataatattttgattgagagaggcctaggAAAAGAAAATGTGTAT--TT-A-AAA-GTTAAATA----------------G---TATT-CTTTGAT-CACT-TTTGT--TATTAAAG--ATACT----AA-----------AC-AAACACGTGTTT-GAAT--------------------------TCGATCCTCCT-----GTAT--GGCCA----ACGCATGCT-----TTTCT--------GGAGTTGCGAG-CCTAAGCAACACGTCGTTACATGTAGTA--ATT-GGTTAGAATTCCTTGCATTCATTGACGATATT---TAATGTATTAAA-ACAGAAAAAATGGTTTATGGGCT-------AACATTTTGATGAGAAATGCCTCGCATACATTTGGGTGCTTTTGGGATGC-T------------G------------G-GCAA----GGCA-----AGTTA----GAGTTTAAAT----CAACAC--TGTGAATGCTTTA--TGGAGACGGCATCAGCAGACCGTGAGGCACCGCTTGAGATCGCGAACGATCGG---GA---ATACGTATAGCAT-TACGTCGGCAAGa
gi|9 : ga-----CGTA----------AGGAACACTTTGCGAGGGAACAA--CAT---CC-GTCCT---CATAGTCCTATTATCCGTCC------TGCT-ATATTAT--------TGCGTCAATGTG----------------TTG--TGAG--C--AACGCGTGGAGTA-GAA-----TGTCGTTTC-AATAA-CACAGCCTG-G-ATGGAA-TTTCTGTAAACGGACAATTTGAAATGTTATTTAG-ACAGCA--------GTTACAATTGTGTTT-GGGATCACTC--TT-GTGCCGTAGAATGTT-TCATTGT-CGCCTATGTTATTCAG--CTCC--ACCA-ATTTGACAGCGGGAGCGTT-A-T-GTTTAGGGTGAA-ATTACAACACATG
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 1 11111111 3333333333 11 111111111 333333333333333333333333333333333 11111111 1111111 111 1 4444444444444 222222 222222222222 111 0000000000000000000000000000 1111 11111 1111 11111 1111 2222222222 5555555555555555555 1111 111 1 44444444444444444444444444444444444444 111111 999999999999999999999999999999999999 11 222222 333333333 222222 11111 4444444444 22222 1 4444444444444 222222 55555555555555555 2222 11 111 1
lowQualScore : 4 0 999 55 0 99999999 999999 4 4 2 55 55 1 5555555555 4 4 4 4 00 3 5 333333333 1 888888888888888888888888888888888 66666666 4 4 4444444 55 3 0 2 111 9 4 3 88 99999 11 2222222222222 333333 999999999999 1 111 2222222222222222222222222222 5 0000 22222 0000 66666 66 0 66 1 4444 0 0 0 2 0 0000000000 55 5 1 3 1 4444444444444444444 6 0 7777 0 444 8 1 0 22 55555555555555555555555555555555555555 3 66 777 4 777 4 0 444444 77 1 333333333333333333333333333333333333 66 1 66 66 66 1 6 5 44 4 444444 5 5 999 000000000 5 8 8 000000 1 8 88888 1 5555555555 8 0 22 77777 22 8 1 1 0 0 0 7777777777777 111111 0 3 0 0 66666666666666666 2 2 0 0 1111 33 222 7 7 5
lowQualScore : . . ... .. . ........ ...... . . . .. .. . .......... . . . . .. . . ......... . ................................. ........ . . ....... .. . . . ... . . . .. ..... .. ............. ...... ............ . ... ............................ . .... ..... .... ..... .. . .. . .... . . . . . .......... .. . . . . ................... . . .... . ... . . . .. ...................................... . .. ... . ... . . ...... .. . .................................... .. . .. .. .. . . . .. . ...... . . ... ......... . . . ...... . . ..... . .......... . . .. ..... .. . . . . . . ............. ...... . . . . ................. . . . . .... .. ... . . .
lowQualScore : 2 0 444 22 1 33333333 333333 4 4 7 55 00 3 7777777777 4 4 4 8 66 7 7 444444444 6 888888888888888888888888888888888 11111111 4 7 1111111 00 6 3 7 000 2 5 6 00 11111 77 4444444444444 111111 333333333333 0 777 4444444444444444444444444444 7 6666 55555 6666 99999 99 1 11 0 0000 5 8 7 5 7 8888888888 22 0 7 0 8 5555555555555555555 0 6 0000 6 000 8 4 4 00 55555555555555555555555555555555555555 2 11 888 4 888 7 1 444444 55 1 888888888888888888888888888888888888 99 4 99 99 22 1 5 0 44 9 444444 7 2 222 000000000 6 0 8 444444 0 0 22222 4 2222222222 0 8 00 88888 00 0 0 0 2 8 0 5555555555555 222222 2 2 2 8 22222222222222222 5 5 2 8 2222 88 333 3 3 5
consensus : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----T-----TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAA-ACAGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACAC--TGTAAATGCTTTA--TGGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATAT-A---------C-------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCG-A-GGATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCT--------CGC--------G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NAGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTT-ACA-TGTACGCCTGTGTTATTCAG--C-CC--GCCA-ATTTGGCGGAGGGAGCGTT-A-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGG---TGATG--G---GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
Reference ( family-1268 ) : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----T-----TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAA-ACAGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACAC--TGTAAATGCTTTA--TGGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATAT-A---------C-------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCG-A-GGATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCT--------CGC--------G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NAGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTT-ACA-TGTACGCCTGTGTTATTCAG--C-CC--GCCA-ATTTGGCGGAGGGAGCGTT-A-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGG---TGATG--G---GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
gi|1 : ATAAAAGAAACTGTTTAAA-CT-A-AAA-CCTAAATGAAA-AC-AA--AAA------CATC-CTCTGAT-CGCTCTTTAT--TCTTAAAGGCATACTTATTAGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACC--CAGTTTGTTAGATAT-TCTGTTTAATTCGCCTT---CG-AT--G-TCA----ACGA----T-----GTTCT--------GGAATTTCAAG-TGTAAGCGATACGTGGTTG------GCA--ATCTGATTAGAATTTTTTGCATTCATTGATAGTATT---CA-TG-ATTGAA-AAGGA-----TAGTCTGTGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATA--T-------------------------G-ACAA----GACA-----ATTTG----GCGTTCATAG----TAACACTTTTTAAATGCTTCATTTCGAGCCGTTTTCATTAAACT----GACACCGTTCTGGAACTTCAACAATCCG---GACGCCAACATGTAACGT-CACGTCGGCAAGACA------------------------------TTTG----CGTAATCCGTTT---AAATT-GCTTCT-GTGACCGCTAGAAGCATCCCTGGGCATCGAA-AGATAAG--TC--CT-----CGTA----------ATGAATAGATAGCGAAAGGCCAG--CAT---TC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTACTCT--------GGT--------G----------------TTC--CGATGCT--G--GTGGGGTGTG-GGAGGCATCGTC-TATC-AATAAGAAGAGATTG-G-ACGGAG-GTTCGGTTTACAAACGAGTCGAGATTTCATCTCG-ACAGCT--------GTGACGGTCGTGCTC-GGGCTTGCCCTATTAGTGCCGCAGAATGTT-ACA-TGTAC---------ATTGA------C--GCCA-ATTCGGCAGAAGGGGCGTT-A-CGGTTTAGGATGGA-ATTACAATTCATGGAAAGACCC-TT---------A---TGATT--G---GCAATTTAACATGCGTACGCCAC----CGTGACA------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACTAACG--TAACGTCACATTCTGCAGAAGGAAAGCGCACG-AC-CGCACT
gi|10 : AGATGCTTAA--TGTAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---AACGCCCCTGTGTGACGT-CACATTGGCATGATACAGATTT-G---------C-------ATGTACGGAAATCACAATCGATTC---TAATCGGCTTCT-TTGA-CACTAGAAGCAACCCTGGGCATTG-ATGGATAAGCATCGTAT-----TGTA----------AAGAACAGATTGAAAGATGCCAC--CAT---CC-ATCGT---CGACGTCATCTTATCC-TCA------CCTT---------------------------G----------------TTG--TGAGTTT--A--GTGTGGTACT-AAAGGCATGGTCATTCC-AAccacacgtgtcactctacagcagcagaatgagaatgtgctactttgtcctgcgatgtcacc
gi|11 : TCGACTCTTTTT---CA-CA--G-CCACAAAATGC----T-----TTTCT--------GGAATTAAGGG-CTTAAGAGACACGTGGCTA------GAA--ATA-TATCAGTGTTTCTTGCATTCATTGGCATTATT---AATTGTATTAAA-ACAGA-----c
gi|11 : ATA---CA-TG-GTCGGA-AATGT-----TTGTTTGCATGTT-------A-----TTGG-----GATGC------------TTGAAGCT---CGAGTG--TTGCAGAGTAATGT------------G-GCAA----GGCA-----AGTTGAGTTGAGTTTATATATGCTAACAC--TGTCAATGaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccatacatggtcggaaatgtttgtttgcatgttattgggatgcttgaagctcgagtgttgcagagtaatgtggcaaggcaagttgagttgagtttatatatgctaacactgtcaatg
gi|12 : tcgactctttttcacagccacaaaatgcttttctggaattaagggcttaagagacacgtggctagaaatatatcagtgtttcttgcattcattggcattattaattgtattaaaacagaaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccAGAACAAACAGTCTACAATT-A-ACA-ATTAGACCAAA--C-AT--AAA-AG---TTTTGTTTTTAT-CACTGCTCAT--ACTTAATGGCACATT--------CTATATA-GAATATACACATGTTT-GGTTACT--CAGTTTGTTAAATATACATTTTCGATTCGC-TA---CG-AT--G-TCC----ATGG----TACTTATTGCT--------GGAGTTTCGAG-CCAACGCAACACGTCGTCA------TCA--ATC-AGTTAGATTGTCTTGCATTTATTTACATTATT---CA-
gi|13 : ACAAAAGAGACCGTGTATA-CTTG-AAA-GTGAAATAAAA-AT-ATTAAAA-AG---TATT-CTTTGAT-CACTCTGTAT--TCTTAAAGGGATA-------GT-TTA-ATG-TACTAAATGCAAGTTT-CAGTACA--CAATTTGTTAAATGT-CA------ATTCGTCTTGCATG-AT--G-GCA----ACAG----CACAA-TTTCT--------TGAGTTTCGAT-CCTCAACGACAGGTGTTTA------GTA--ATC-GATTAGAATTTCTAGC
gi|14 : TAT--TTCAAAAGGCATA-------AT-TTA-ATA-TACTGAACGCGTGTTT-GAGTACT--CAGTATGTTAAATAT-CGCGTTCAATTCACCTT----G-AT--GACCACAACACGT----T-----CTTCT--------GGAATGTCGAA-CTTAAGCGACACGTGGTGA------GTA--ATC-GACACGGATTT-TTGCATTCATGGAAAATA
gi|15 : ATAAG--TC--CT-----CGTACTGTA-----AGGAACAGAATGCAAGAGGCAAA--CCT---CC-GTTCTGTTC--CGTTCTCGTATCCGTCC------TGTT-CTGATGT--------CACCGT-----G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCACCGTC-----------------------------A-ATTCTATTTACGGACGAATCGAGATATCATCTCG-GCacagaaaaacgtctgt
gi|16 : cgacgtAA----GGAA-----GT--G----AAGTTCATAT----TAACAC--TGTCAATGCTTTA--TGGAGATGATATCAGCAAACT----GGCACCATTTGAGACCGTCCAGGATCAG---GACGCCC-CGCGT--------CGTCGGTAAGATACATATAT-G---------T-------ATATg
gi|17 : gcaAAGAAATTATGTATA-CT-T-AAA-ATTCAATAAAACAT-AA--AAA-GG---TATT-TCTTGAT-AACTCTTTATACTTTTAAAAG---AC-----AGT-TTA-ATA-TACT-AATGCGTGTTT-GAATACTGACA-TTTGTTAAATAT-CGCGTTCGATTC-TTTT---TG-ATG-G-CCA----ggatgtcacattagcacaaccga
gi|18 : T-AT--AAACAG---TATT-CTTCGGT-C--TCTCTAC--TCTTAGAGGCATA-------AC-TTG-ATAATACTAAACGAGTGTTT-GAGTTCT--CAATTTATTAGATAT-CGTGTTCGATTCGCCTT---g
gi|19 : atactagtgtataaaatgcgtattctt---CA-TA-ATTGAATATA-A-----TCGTCTGTGTGTT-------A-----TTGA-----GATGC------------Tggt
gi|19 : attcatattcatattctgttgaatattgatgaggagagttctcgAGATGCTTAA--TGTAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCtaatgtagacaatagcagcaaactggcaccgttcgggaccgcccacgatc
gi|2 : attcatattcatattctgttgaatattgatgaggagagttctcgcataattgaatataatcgtctgtgtgttattgAAATCGAGGATA-CT-A-AAAAGTTAAATAAAACATTAA--AAA-AG---TATT-CTTCAATTCGCTCTTTAT--TCTTGAAG---CGGT----AGTCTTA-ATG-T-CTAAAAGCGTGTTTCAAGT--TA-CAGTTT-CTAA------GCATTCGATTTGTCTTG--CT-AG--C-CCT----ACGC----TTGC--TTTCTATAGACTCGGAATTATGTGACCAAAAC-ACAAGTGGTT-------GTATGCTA-GATT---TTTTTTTGCATTTATTGATAATGTTA--AA-TGTATTGAA-ACAGA-----
gi|2 : agcagaA-TG-ATTGAG-A--GG-----TGCCTTGCATGTTGCGTGCGA-----TTGG------ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GAAC-----GTTTG----GAGTTTTTA------AACGT--TGTAAATGCTTCA--TAGAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCAAGTGTAACGT-TACGCCGACAAGATACGTATAT-ATACTAACATT-------ATATTTTG----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATATATC--------AAA--TT--CT-----TGTAGCCTACAACGAGGGAC--ATTACGGGAGG-------------------T---CTAGGTCCCACTGTCCGTTC------TGTC-CTGCTCT--------CGT--------GTCATCGTGTGATCATATTG--GGAGGTT--A--GCTTGGTTTG-GTAGGCATCGTCGTTTC-AATAGCAAGAGATTG-GAA-GGAA-GCTTTGTTAACAGAGTAGTTGAGagaatattggttttggtgggggaaatgattgagaggtgccttgcatgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaagaacgtttggagtttttaaacgttgtaaatgcttcatagagacgatatcagcaaactgacactgtttgggttcgcccaagtgtaacgttacgccgacaagatacgtatatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatatatcaaattcttgtagcctacaacgagggacattacgggaggtctaggtcccactgtccgttctgtcctgctctcgtgtcatcgtgtgatcatattgggaggttagcttggtttggtaggcatcgtcgtttcaatagcaagagattggaaggaagctttgttaacagagtagttgagtctc
gi|20 : agcagaaaatcgaggatactaaaaagttaaataaaacattaaaaaagtattcttcaattcgctctttattcttgaagcggtagtcttaatgtctaaaagcgtgtttcaagttacagtttctaagcattcgatttgtcttgctagccctacgcttgctttctatagactcggaattatgtgaccaaaacacaagtggttgtatgctagatttttttttgcatttattgataatgttaaatgtattgaaacagaagaatattggttttggtgggggaaATG---------------C------------G-ACAA----AGCA-----GCTTG----GAGTTCATTT----TAAAAC--TTTAAATGCTATA--TAGAGATG-TAT--GCAAACT----GGCACCGTTCTGGACTGACCACAA------------CCGCGAGTAACGT-CACtctc
gi|21 : ttggatggcataaagcaAGAAACGTTGTATA-CT-TTAAA-CTTAGATAAAA-GC-AT--AAA-AAGTATATT-CTTTGAT-CGCTCTTCAT--TCTTATAGTCAT
gi|22 : aatggaaaacg-----CGTA----------CAGAACAGATTACGAGAGGCCGAATCATAAACCGGTCCT---CTACATTCTGCTACCCGTggtattatg
gi|23 : ----ACGC----T-----TTTCT--------GGCGTTTCGAG-C-TAAGCGACACGTGGCTT------GTA--ATC-tactccgtttctaacgcttgat
gi|24 : agaacGTT-------GTA--ATC-GATTAAAATGTCTTGCATTCATTGGCAGTATT---CA-acaggg
gi|3 : aATCAGCAAGCT----GGCACCGTTTGGGACCGCCCACCATCAGTTTGACA-------GTAAGATACATGTACGTATAA-ACGGACGTCA---------C-------ATAT---G----CATAATAACTTCTTAGA---GGCTTCT-TTGACTGCTGGAAACATCCGTACACAT-----GTACA----------------GTA----------AGGAACAGATTGAGAGATGCCAA--TTT---CC-GTCCT---TGACGTTCTGCAATC-----------------TACTCT--------GGC--------GACAATATG--------TTT--CGAGGTT--A--GCGTGGTGTA-GAGGACATCGTCGTTTC-AATAA-CAGAAATTG-G-G-CGAACGTTCTTTTTATGAACAATTCGAGATTTCATCT---------------------------TGTTC-GGGGTTAACC-ATT-ATGCCGGAGATTGTT-ACA-TTGACGACTGTGTTATTGAA--TACC--GCCA-ATTTCGAGGAGGGAGCATTAA-A-GTATGGAGTTTA-ATAACTACACATGCACGGACCC-TT-------TGG---TGATG--GGGAGGAATTTAACCGACGTATGCTACCCTGCG----A------AGATTGTACTTCAGGACGTCAATCCATCCACTCATTCACAATAAGCAGCG--atgtatt
gi|4 : TA------GTA--ATC-GGTTAGATTTTTTTGCATTTGTTGATAATGTTAAACG-T--ATTGAA-ACAGA-----aatttgcagattcaagctgc
gi|4 : A-TG-ATTGAG-A--GG-----TGCCTTGCGTGTTGCGTGCGA-----TTGG------ATCC------------TGGAAGAT---GGGATA--T------------CTCATAGTAATGTG-ACAA----GGAC-----GTTTG----GAGTTTTTA------AACGC--TGTAAATGCTTTA--TAGAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCATGTGTAAGGT-TACGTCGACAAGATACGTATAT-A---------CTAACATTATATTTTG----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATACATC--------AAA--TC--CT-----CGTAGTCTACAACGAGGGAC--ATTACGGGAGGTCagaatattggttttggtggggaaatgattgagaggtgccttgcgtgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaaggacgtttggagtttttaaacgctgtaaatgctttatagagacgatatcagcaaactgacactgtttgggttcgcccatgtgtaaggttacgtcgacaagatacgtatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatacatcaaatcctcgtagtctacaacgagggacattacgggaggtctaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|5 : tagtaatcggttagatttttttgcatttgttgataatgttaaacgtattgaaacagaagaatattggttttggtggggaaTTCT-TTGACCGCTAGAAGTCTTCCTTAGAATCG-ATGGATAAG--AC--ATTGTGCCGTA----------AGAAACAGATTACGAGAGACCAA--CAT---CC-GTCCT---CAACGTCCTGCTATCCATCCATTTTCTGTTTCTGCGCTTAC-----CGC--------T----------------TTATACAAAACA--A--GCTTGGTGTTTGAAGGCATCGTCGTTTGGAATAA-AAGAG----------GAA-GTTCTACTTACAGACGAGTCGACATTTCATCTTGCGCAGCAACTCGCACGCG-TGGTCGTGTTCAGAGCTTA-CC-ATC--TGTCAAAGAACGTTAAAA-TG-ATGCCTGTTTTATTCAG--CGCCAAACCA-A-TTGGCA-------------------TGAGGTAGATATTACAACACATAAAGGAACTCATT-------TGGTTTTAGTGGAG---GCAATTTAACCGACATACGCTTCG---TG----ATTCATGAGATTGTACGTCAGTACAGTATTCCAT----ACATTCACAACAACCAAGG--TATCGT--CATTCTGCAACACGACAACGCTCGAACACGCACTtaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|6 : TCT-TCGACCGCTAGAAGCACCCCTTGGCATCG-ACGGATAAG--TC--CTTGTGCCGTA----------AGGA-------------GGCCCA--CAT---CC-ATCTT---TGACGTCCTGCTTTCCGTCA------TGTT-CTACTCTGGAGTCACCGT--------G----------------TTG--CGAGGTTGCA--GCGTGGTGTA-TGAGGCAAATTTATTTC-AATAA-CAGAGATTGAG-T-GTAA-GGTCTGTTTACAGATGAGTCGAGATTTCATATCG-A-AGCA--------GTGACGGTCGTGCTC-GGACTTAGCT--TC-GTGTCGGAGAACTTT-ACACTG-ACGCCTACGTCATTCGGAAT-AT--TCTATATTTGGCGGAAGGAGTGTT-CTC-GATTGTGCTGGA-ATGGCAACCCATGGAAGGACCC-TTTTGGTGATAG---TGATG--G---ACAATTTAACCAGCG------AA----CG----A------A----------CTGCACACCATTTCAT----TCATTCACAACAACCAGCGTATAACGTCA-A-TGTGCAGCAGAGCAACGCACGAgc
gi|7 : aaAACTGTGTATAACT-A-AAT-GTTAAATACAC-GT-AA--GAA-AA----ATT-CTTTGTT-CGCTCTATAC--TATTAAAGGCA---T----AGT-CTA-ATA-TCCTAAATGTGTGTT---AGTACT--GAATTT-------------GTTCAATTCGCCTT----G-ATGAG-GCATAGCACGA----T-----TTTCT--------GGAATTTCGAG-AATAAACGACATGTGGTTA------GTT--GTC-GATTAGAATTTCTTGCATTTATTGACAGTGTT---CAGTGCATTGAA-ACAGA-----ccgc
gi|7 : gA-TG-ATTGAA-ATTGA-----TCTTTTGTGTATT-------A-----TTGG-----AATGC------------TGAAAGTT---AGGATACCT------------C------------ACATAAATGTGGCAAAGATGTTTG----GGGTTCATAT----TGAAAC----TAAATGCTTTA--TGAAGACGATGTCATCAAACTTA--GGTACCG-TGGGGACCGCCAACGATaaaaagtttttgaaataatattttgattgagagaggcctaggatgattgaaattgatcttttgtgtattattggaatgctgaaagttaggatacctcacataaatgtggcaaagatgtttggggttcatattgaaactaaatgctttatgaagacgatgtcatcaaacttaggtaccgtggggaccgccaacgata
gi|8 : gaactgtgtataactaaatgttaaatacacgtaagaaaaattctttgttcgctctatactattaaaggcatagtctaatatcctaaatgtgtgttagtactgaatttgttcaattcgccttgatgaggcatagcacgattttctggaatttcgagaataaacgacatgtggttagttgtcgattagaatttcttgcatttattgacagtgttcagtgcattgaaacagaaaaaagtttttgaaataatattttgattgagagaggcctaggAAAAGAAAATGTGTAT--TT-A-AAA-GTTAAATA----------------G---TATT-CTTTGAT-CACT-TTTGT--TATTAAAG--ATACT----AA-----------AC-AAACACGTGTTT-GAAT--------------------------TCGATCCTCCT-----GTAT--GGCCA----ACGCATGCT-----TTTCT--------GGAGTTGCGAG-CCTAAGCAACACGTCGTTACATGTAGTA--ATT-GGTTAGAATTCCTTGCATTCATTGACGATATT---TAATGTATTAAA-ACAGAAAAAATGGTTTATGGGCT-------AACATTTTGATGAGAAATGCCTCGCATACATTTGGGTGCTTTTGGGATGC-T------------G------------G-GCAA----GGCA-----AGTTA----GAGTTTAAAT----CAACAC--TGTGAATGCTTTA--TGGAGACGGCATCAGCAGACCGTGAGGCACCGCTTGAGATCGCGAACGATCGG---GA---ATACGTATAGCAT-TACGTCGGCAAGa
gi|9 : ga-----CGTA----------AGGAACACTTTGCGAGGGAACAA--CAT---CC-GTCCT---CATAGTCCTATTATCCGTCC------TGCT-ATATTAT--------TGCGTCAATGTG----------------TTG--TGAG--C--AACGCGTGGAGTA-GAA-----TGTCGTTTC-AATAA-CACAGCCTG-G-ATGGAA-TTTCTGTAAACGGACAATTTGAAATGTTATTTAG-ACAGCA--------GTTACAATTGTGTTT-GGGATCACTC--TT-GTGCCGTAGAATGTT-TCATTGT-CGCCTATGTTATTCAG--CTCC--ACCA-ATTTGACAGCGGGAGCGTT-A-T-GTTTAGGGTGAA-ATTACAACACATG
blockSeqs : A A TG AG ATATTA AAGTA G T A AC GC C GTAGTC T A C A GA G G ATATACATT T GCATGATGGCAACAGCACAA ATAGACTC A T ACATGTA TG . T AAA T T T CA AAAAA TG GCGTGCGA TGAGAA CTCGCATACATT C TTT TTGCAGAGTAATGT C ATGT AAGAT AGTT TATGC . . A GTGA C AGTTTGACA CT A T G T ATACTAACATT A AAAT TTA A G GG GATGGATAAGACATTGTGCCGTA A AT AAA G GTT G ATTTTC TC G CGTGTCATCGTGTGATCATA TA T GC AC TT A A G CA A GAAG C C CGC AACTCGCAC A A A ATTA G A TTGA G GCGCCAAA T AG AAA TA T A A A TTGGTGATAG GGGA T GTGATTCATG G T CCAC TA CA T A A
blockSeqs : C A TT A CATTAA CAG . . A . GG T CAGT . . . A A A G ATATCGCG G CGATGTCCATGGTACTTA . . C A . . T A G T . AT . CG GCGTGCGA G . A . TCTCATAGTAATGT . . . . T . . A TA C AGAACGC AA . T T A ACTAACATT T . . C G AT GACGGATAAGTCCTTGTGCCGTA A . . . . T . C G GGCGACAATATG . G . . T G G . C A AGTG . T GC A A . G ATC A . CTGA G GAATATT . AA CTC AT . T A . TGGTTT GAG T CCTGCGA G G . . C . A
blockSeqs : T . A G CATAA AG . . A . GC T TAGT . . . A . G G ATATCGCG G GATGAGGCATAGCACGAT . . C A . . A . A C . TA . GC AACATT G . A . TCTCATAGTAATGT . . . . T . . A . C AGGACGC GC . T T A CAC T . . C . AC GATGGATAAGCATCGTATTGTA A . . . . T . C A GGAGTCACCGTG . G . . A T G . A A GATG . C AC A . . C TCG G . TTGT A ATACCG . CG AT TT . G C . TGG G . CGA . . . .
blockSeqs : C . T A GCAT AG . . G . GC T CTAA . . . A . A G ATATCGTG A GTATGGCCAACGCATGCT . . T A . . A . . T . CA . GC A A . T . CCTC . . . . T . . A . C GGGA AT . T G G GC . . . . . AT AAATTCTTGTAGCCTACAACG A . . . . G . C G TGCGTCAATGTG . G . . G A G . C C GGC . A A . . . . TTG T . TGA A GCTCCA . . . . . T A
blockSeqs : G . A C GTAA GG . . G . TC C TT . . . T . G A ATGTCA G CACAGCCACAAAATGCT . . C A . . G . . . . CA . CT A . . C . CTG . . . . T . . A . C CGC AC . . T A GT . TA AAATCCTCGTAGTCTACAACG A . . . . A . A A CACCGTG . A . . A A A . C . . . . .
blockSeqs : T . A G CAT AG . . G . GC T GT . . . A . A . GCA G GATGACCACAACACGTT . . A T . . A . . . . CA . GG A . . C . . . . . . . A . A CGC C . . TG GTACAGTA A . . . . G . . A TACCGCT . G . . A G G . . . . .
blockSeqs : T . A G . AA . . A . G T AT . . . . . . . G G GCTAGCCCTACGCTTGC . . C A . . G . . . . TT . . . . . . . G . A . . . . . . . . A . . . G . . . . A A . .
blockSeqs : G . . . . . . AC . . . . . . . . T . . . A . . A . . . . CA . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : .
blockSeqs : .
blockSeqCons : AG**** GT******** GATGGCCACGGCACGCN**************** CCTCAAGTAATGT*************** ** ** GCCAT************** GATGGATAAGTCNTCGTAGCCGTACAACG********* GCGCANCGTG************************** C* TCG*** GNNCCG****
originalCons : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATACT----AGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTT---CG-AT--G-CCA----ACGN----T-----TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAA-ACAGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATG--T------------C------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACAC--TGTAAATGCTTTA--TGGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATAT-A---------C-------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCG-A-GGATAAG--TC--CT-----CGTA----------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCT--------CGC--------G----------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-NAGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCC-ATC-GTGCCGNAGAACGTT-ACA-TGTACGCCTGTGTTATTCAG--C-CC--GCCA-ATTTGGCGGAGGGAGCGTT-A-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGG---TGATG--G---GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
finalCons : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAAAG----TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATAGT--------TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCTTGATGGCCACGGCACGCN----------------TTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGTTA------GTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---CA-TG-ATTGAA-ACAGA-----TNGTTTGCGTGTT-------A-----TTGG-----GATGC------------TGGAAGCT---GGGATGCCTCAAGTAATGT---------------G-ACAA----GGCA-----GTTTG----GAGTTCATAT----TAACAC--TGTAAATGCTTTA--TGGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGT-CACGTCGGCAAGATACGTATATGCCAT--------------ATATTTTG----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCGATGGATAAGTCNTCGTAGCCGTACAACG---------AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC------TGTT-CTGCTCTGCGCANCGTG--------------------------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAAC-AGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTC-GGGCTTANCCTCG---TGCCGNAGAACGTT-ACA-TGTACGCCTGTGTTATTCAGNNCCG----CCA-ATTTGGCGGAGGGAGCGTT-A-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGG---TGATG--G---GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
Alignments
lowQualScore : 1 11111111 1111111111 11 111111111 11 11111111 111111 111 1 1111111111111 3333333333333333 66666666666666666666666666666666666666666666666666666666666666666 1111 11111 1111 2222222222 66666666666666666666666666666 111 1 11111 555555555555 5555555555555 11111111 111 222222 333333333 222 222222 222222222 22222 1 33333333333333 333 55555555555555555 2222 11 111 1
lowQualScore : 4 0 999 55 0 99999999 999999 4 4 2 55 2 6666666666 4 4 4 4 00 3 5 999999999 8888 4 4 66 77 44 66666666 44 000000 3 55 3 0 2 111 3 6 6 4 33 8888888888888 1 2 4444444444444444 77 55555555555555555555555555555555555555555555555555555555555555555 77 22 0000 66666 66 0 66 1 4444 0 0 0 2 0 0000000000 55 5 99 33333333333333333333333333333 0 444 8 1 0 22 66666 3 2 777777777777 0 66 777 4 777 4 0 5 2222222222222 66 2 88888888 66 1 66 66 66 1 6 5 222 4 444444 5 5 999 000000000 5 8 1 222 44 1 666666 1 222222222 8 3 22 77777 22 8 1 1 0 0 0 88888888888888 111 0 3 0 0 66666666666666666 2 2 0 0 1111 33 222 7 7 5
lowQualScore : . . ... .. . ........ ...... . . . .. . .......... . . . . .. . . ......... .... . . .. .. .. ........ .. ...... . .. . . . ... . . . . .. ............. . . ................ .. ................................................................. .. .. .... ..... .. . .. . .... . . . . . .......... .. . .. ............................. . ... . . . .. ..... . . ............ . .. ... . ... . . . ............. .. . ........ .. . .. .. .. . . . ... . ...... . . ... ......... . . . ... .. . ...... . ......... . . .. ..... .. . . . . . . .............. ... . . . . ................. . . . . .... .. ... . . .
lowQualScore : 2 0 444 22 1 33333333 333333 4 4 7 55 5 6666666666 0 4 4 8 66 7 7 999999999 5555 0 4 11 66 33 11111111 66 555555 6 00 6 3 7 000 3 7 0 0 33 1111111111111 0 7 7777777777777777 99 11111111111111111111111111111111111111111111111111111111111111111 99 88 6666 99999 99 1 11 0 0000 5 8 7 5 7 8888888888 22 4 22 88888888888888888888888888888 6 000 8 4 4 00 55555 4 8 666666666666 8 11 888 4 888 7 9 0 4444444444444 99 8 11111111 99 4 99 99 22 1 5 0 111 9 444444 7 2 222 000000000 6 0 0 000 66 0 222222 4 666666666 0 8 00 88888 00 0 0 0 2 8 0 55555555555555 222 2 2 2 8 22222222222222222 5 5 2 8 2222 88 333 3 3 5
consensus : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATA-------GT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCT----T-GATG-GCC--ACGGCACGCTTTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGT------TAGTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---C-A-TG-ATTGAA-ACAG-----A-------TNGTTTGCGTG-------TT-------ATTGGGA--TGC-------------------TGGAA--GC------------TGG-------GATGTC-TCA-AGT-AATGC--GGCAAGGNAGTTTG----GAGTTCATAT----TAACAC--TGTAAATGCTTTA--TGGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGTCACGTCGGCAAGATACG--TATA------TGCCA----TATATTTTG-----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCGACGGATAAGTCCTCGTAGCCGTACA---AGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC-TGTTCTGCT-CT-GCG---C--ACCGTG--------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-C-AGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTCGG-GCTTACCC---TCGTGCCGNAGAACGTTACA-T-GTACGCCTGTGTTATTCAGCGC-CG--CCA-ATTTGGCGGAGGGAGCGTT-A-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGGT---GATGGGG-GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
Reference ( family-1268 ) : ACAAAAGAAACCGTGTATA-CT-A-AAA-GTTAAATAAAA-AT-AN--AAA-AG---TATT-CTTTGAT-CGCTCTTTAT--TCTTAAAGGCATA-------GT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACT--CAGTTTGTTAAATAT-CGCGTTCGATTCGCCT----T-GATG-GCC--ACGGCACGCNTTTCT--------GGAGTTTCGAG-CCTAAGCGACACGTGGT------TAGTA--ATC-GATTAGAATTTCTTGCATTCATTGACAGTATT---C-A-TG-ATTGAA-ACAG-----A-------TNGTTTGCGTG-------TT-------ATTGGGA--TGC-------------------TGGAA--GC------------TGG-------GATGCC-TCA-AGT-AATGT--GACAAGGCAGTTTG----GAGTTCATAT----TAACAC--TGTAAATGCTTTA--TGGAGACGATATCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---GACGCCCACGTGTAACGTCACGTCGGCAAGATACG--TATA------TGCCA----TATATTTTG-----CGTAATCGATTC---GANTCGGCTTCT-TCGACCGCTAGAAGCACCCCTNNGCATCGATGGATAAGTCNTCGTAGCCGTACAACGAGGAACAGATTGCGAGAGGCCAA--CAT---CC-GTCCT---CGACGTCCTGCTATCCGTCC-TGTTCTGCT-CT-GCG---C--ANCGTG--------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCATCGTCGTTTC-AATAA-C-AGAGATTG-G-A-GGAA-GTTCTGTTTACGGACGAGTCGAGATTTCATCTCG-ACAGCA--------GTGACGGTCGTGTTCGG-GCTTANCC---TCGTGCCGNAGAACGTTACA-T-GTACGCCTGTGTTATTCAGNNC-CG--CCA-ATTTGGCGGAGGGAGCGTT-A-C-GTTTGGGGTGGA-ATTACAACACATGGAAGGACCC-TT-------TGGT---GATGG---GCAATTTAACCGGCGTACGCTAC----CG----A------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACCAGCG--TAACGTCACATTCTGCAGCAGGACAACGCACGAACACGCACT
gi|1 : ATAAAAGAAACTGTTTAAA-CT-A-AAA-CCTAAATGAAA-AC-AA--AAA------CATC-CTCTGAT-CGCTCTTTAT--TCTTAAAGGCATACTTATTAGT-TTA-ATA-TACTAAACGCGTGTTT-GAGTACC--CAGTTTGTTAGATAT-TCTGTTTAATTCGCCT----TCGATG-TCA--ACG--ATG---TTCT--------GGAATTTCAAG-TGTAAGCGATACGTGGT------TGGCA--ATCTGATTAGAATTTTTTGCATTCATTGATAGTATT---C-A-TG-ATTGAA-AAGG-----A-------TAGTCTGTGTG-------TT-------ATTGGGA--TGC-------------------TGGAA--GC------------TGG-------G---------------ATAT--GACAAGACAATTTG----GCGTTCATAG----TAACACTTTTTAAATGCTTCATTTCGAGCCGTTTTCATTAAACT----GACACCGTTCTGGAACTTCAACAATCCG---GACGCCAACATGTAACGTCACGTCGGCAAGACA----------------------------TTTG-----CGTAATCCGTTT---AAATT-GCTTCT-GTGACCGCTAGAAGCATCCCTGGGCATCGAAAGATAAGTCCTCGTA-----------ATGAATAGATAGCGAAAGGCCAG--CAT---TC-GTCCT---CGACGTCCTGCTATCCGTCC-TGTTCTACT-CT-G-----------GTG--------TTC--CGATGCT--G--GTGGGGTGTG-GGAGGCATCGTC-TATC-AATAAGA-AGAGATTG-G-ACGGAG-GTTCGGTTTACAAACGAGTCGAGATTTCATCTCG-ACAGCT--------GTGACGGTCGTGCTCGG-GCTTGCCCTATTAGTGCCGCAGAATGTTACA-T-GTAC---------ATTGA-----CG--CCA-ATTCGGCAGAAGGGGCGTT-A-CGGTTTAGGATGGA-ATTACAATTCATGGAAAGACCC-TT---------AT---GATTG---GCAATTTAACATGCGTACGCCAC----CGTGACA------AGATTGTACGTCAGCACGTCATTCCAT----TCATTCACAACAACTAACG--TAACGTCACATTCTGCAGAAGGAAAGCGCACG-AC-CGCACT
gi|10 : AGATGCTTAA--TGTAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCAG---AACGCCCCTGTGTGACGTCACATTGGCATGATACA--GATT------TG-CA----TGTA---CGGAAATCACAATCGATTC---TAATCGGCTTCT-TTGA-CACTAGAAGCAACCCTGGGCATTGATGGATAAG-CATCGTA-TTGTA-----AAGAACAGATTGAAAGATGCCAC--CAT---CC-ATCGT---CGACGT---------CATCT-TATCCT-------------C--ACCTTG--------TTG--TGAGTTT--A--GTGTGGTACT-AAAGGCATGGTCATTCC-AAccacacgtgtcactctacagcagcagaatgagaatgtgctactttgtcctgcgatgtcacc
gi|11 : TCGACTCTTTT----T-CACA-GCC--ACAAAATGCTTTTCT--------GGAATTAAGGG-CTTAAGAGACACGTGGC------TAGAA--ATA-TATCAGTGTTTCTTGCATTCATTGGCATTATT---A-ATTGTATTAAA-ACAG-----A-------c
gi|11 : ATA---C-A-TG-GTCGGA-AATG-----T-------TTGTTTGCATG-------TT-------ATTGGGA--TGC-------------------TTGAA--GC------------TCG-------AGTGTT-GCAGAGT-AATGT--GGCAAGGCAAGTTGAGTTGAGTTTATATATGCTAACAC--TGTCAATGaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccatacatggtcggaaatgtttgtttgcatgttattgggatgcttgaagctcgagtgttgcagagtaatgtggcaaggcaagttgagttgagtttatatatgctaacactgtcaatg
gi|12 : tcgactctttttcacagccacaaaatgcttttctggaattaagggcttaagagacacgtggctagaaatatatcagtgtttcttgcattcattggcattattaattgtattaaaacagaaaaaaagtcatgttttttttccgaataaatgtagggttgagagatccccAGAACAAACAGTCTACAATT-A-ACA-ATTAGACCAAA--C-AT--AAA-AG---TTTTGTTTTTAT-CACTGCTCAT--ACTTAATGGCACA-------TT-CTATATA-GAATATACACATGTTT-GGTTACT--CAGTTTGTTAAATATACATTTTCGATTCGCTA----C-GATG-TCC--ATGGTACTTATTGCT--------GGAGTTTCGAG-CCAACGCAACACGTCGT------CATCA--ATC-AGTTAGATTGTCTTGCATTTATTTACATTATT---C-A-
gi|13 : ACAAAAGAGACCGTGTATA-CTTG-AAA-GTGAAATAAAA-AT-ATTAAAA-AG---TATT-CTTTGAT-CACTCTGTAT--TCTTAAAGGGATA-------GT-TTA-ATG-TACTAAATGCAAGTTT-CAGTACA--CAATTTGTTAAATG-------TCAATTCGTCTTGCAT-GATG-GCA--ACAGCACA-ATTTCT--------TGAGTTTCGAT-CCTCAACGACAGGTGTT------TAGTA--ATC-GATTAGAATTTCTAGC
gi|14 : TAT--TTCAAAAGGCATA-------AT-TTA-ATA-TACTGAACGCGTGTTT-GAGTACT--CAGTATGTTAAATAT-CGCGTTCAATTCACCT----T-GATG-ACC--ACAACACGTTCTTCT--------GGAATGTCGAA-CTTAAGCGACACGTGGT------GAGTA--ATC-GACACGGATTT-TTGCATTCATGGAAAATA
gi|15 : CGACGTATAAGTCCTCGTA-CTGTA-----AGGAACAGAATGCAAGAGGCAAA--CCT---CC-GTTCTGTTC--CGTTCTCGTATCCGTCC-TGTTCTGAT-GT-------C--ACCGTG--------TTG--CGAGGTT--A--GCGTGGTGTA-GGAGGCACCGTC------------------------------A-ATTCTATTTACGGACGAATCGAGATATCATCTCG-GCacagaaaaacgtctgt
gi|16 : AAGGAAGT--G----AAGTTCATAT----TAACAC--TGTCAATGCTTTA--TGGAGATGATATCAGCAAACT----GGCACCATTTGAGACCGTCCAGGATCAG---GACGCCC-CGCGT-------CGTCGGTAAGATACA--TATA------TG-------TATATg
gi|17 : gcaAAGAAATTATGTATA-CT-T-AAA-ATTCAATAAAACAT-AA--AAA-GG---TATT-TCTTGAT-AACTCTTTATACTTTTAAAAG-ACA-------GT-TTA-ATA-TACT-AATGCGTGTTT-GAATACTGACA-TTTGTTAAATAT-CGCGTTCGATTCTTTT----T-GATG-GCC--Aggatgtcacattagcacaaccga
gi|18 : T-AT--AAACAG---TATT-CTTCGGT-C--TCTCTAC--TCTTAGAGGCATA-------AC-TTG-ATAATACTAAACGAGTGTTT-GAGTTCT--CAATTTATTAGATAT-CGTGTTCGATTCGCCT----T-GGTg
gi|19 : atactagtgtataaaatgcgtattctt---C-A-TA-ATTGAATATA------A-------TCGTCTGTGTG-------TT-------ATTGAGA--TGC-------------------T
gi|19 : attcatattcatattctgttgaatattgatgaggagagttctcgAGATGCTTAA--TGTAGACAATAGCAGCAAACT----GGCACCGTTCGGGACCGCCCACGATCtaatgtagacaatagcagcaaactggcaccgttcgggaccgcccacgatc
gi|2 : attcatattcatattctgttgaatattgatgaggagagttctcgcataattgaatataatcgtctgtgtgttattgAAATCGAGGATA-CT-A-AAAAGTTAAATAAAACATTAA--AAA-AG---TATT-CTTCAATTCGCTCTTTAT--TCTTGAAGCGGTA-------GTCTTA-ATG-T-CTAAAAGCGTGTTTCAAGT--TA-CAGTTT-CTAA------GCATTCGATTTGTCT----T-GCTA-GCCCTAC-GCTTGC-TTTCTATAGACTCGGAATTATGTGACCAAAAC-ACAAGTGGT------T-GTATGCTA-GATT---TTTTTTTGCATTTATTGATAATGTTA--A-A-TGTATTGAA-ACAG-----AAGAATATTGGTTTTGGTGGGGGAAATG-------ATTGAGAGGTGCCTTGCATGTTGCGTGCGATTGGAT--CC------------TGGAAGATGGGATATC-TCATAGT-AATGT--GACAAGAACGTTTG----GAGTTTTTA------AACGT--TGTAAATGCTTCA--TAGAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCAAGTGTAACGTTACGCCGACAAGATACGTATATA------TACTAACATTATATTTTG-----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATATATC-------AAATTCTTGTAGCC-TACAACGAGGGAC--ATTACGGGAGG-------------------T---CTAGGTCCCACTGTCCGTTC-TGTCCTGCT-CTCGTGT--C--ATCGTGTGATCATATTG--GGAGGTT--A--GCTTGGTTTG-GTAGGCATCGTCGTTTC-AATAG-CAAGAGATTG-GAA-GGAA-GCTTTGTTAACAGAGTAGTTGAG
gi|20 : agcagaG-------GATGGCATAA-AGC-AATGC--GACAAAGCAGCTTG----GAGTTCATTT----TAAAAC--TTTAAATGCTATA--TAGAGATG-TAT--GCAAACT----GGCACCGTTCTGGACTGACCACAA------------CCGCGAGTAACGTCACtctc
gi|21 : ttAGAAACGTTGTATA-CT-TTAAA-CTTAGATAAAA-GC-AT--AAA-AAGTATATT-CTTTGAT-CGCTCTTCAT--TCTTATAGTCATG-------GTATTA-
gi|22 : aatggaaaacgCGTACA-----GAACAGATTACGAGAGGCCGAATCATAAACCGGTCCT---CTACATTCTGCTACCCGTtg
gi|23 : CACGCTTTTCT--------GGCGTTTCGAG--CTAAGCGACACGTGGC------TTGTA--ATC-tactccgtttctaacgcttgat
gi|24 : agaaGT------T-GTA--ATC-GATTAAAATGTCTTGCATTCATTGGCAGTATT---C-A-acaggg
gi|3 : aATCAGCAAGCT----GGCACCGTTTGGGACCGCCCACCATCAGTTTGACA-------GTAAGAT-ACAT-------GTACG--TATAAACGGACGTCA----CATAT---G-----CATAATAACTTCTTAGA---GGCTTCT-TTGACTGCTGGAAACATCCGTACACAT----------------------GTACAGTAAGGAACAGATTGAGAGATGCCAA--TTT---CC-GTCCT---TGACGTTCTGCAATC------TACTCTG------GCGA--C--AATATG--------TTT--CGAGGTT--A--GCGTGGTGTA-GAGGACATCGTCGTTTC-AATAA-C-AGAAATTG-G-G-CGAACGTTCTTTTTATGAACAATTCGAGATTTCATCT---------------------------TGTTCGG-GGTTAACCA--TTATGCCGGAGATTGTTACA-T-TGACGACTGTGTTATTGAATAC-CG--CCA-ATTTCGAGGAGGGAGCATTAA-A-GTATGGAGTTTA-ATAACTACACATGCACGGACCC-TT-------TGGT---GATGGGGAGGAATTTAACCGACGTATGCTACCCTGCG----A------AGATTGTACTTCAGGACGTCAATCCATCCACTCATTCACAATAAGCAGCG--atgtatt
gi|4 : ------TAGTA--ATC-GGTTAGATTTTTTTGCATTTGTTGATAATGTTAAAC-G-T--ATTGAA-ACAG-----A-------aatttgcagattcaagctgc
gi|4 : -A-TG-ATTGAG-A--G-----G-------TGCCTTGCGTG-------TTGCGTGCGATTGG-A--TCC-------------------TGGAA--GA------------TGG-------GATATC-TCATAGT-AATGT--GACAAGGACGTTTG----GAGTTTTTA------AACGC--TGTAAATGCTTTA--TAGAGACGATATCAGCAAACT----GACACTGTTTGGG-----------TT-------CGCCCATGTGTAAGGTTACGTCGACAAGATACG--TATA------TACTAACATTATATTTTG-----CGTAAGCGATTC---GACTCGGAATATGTCGACTGCTAGAAGAACCCTTATACATC-------AAATCCTCGTAGTC-TACAACGAGGGAC--ATTACGGGAGGTCagaatattggttttggtggggaaatgattgagaggtgccttgcgtgttgcgtgcgattggatcctggaagatgggatatctcatagtaatgtgacaaggacgtttggagtttttaaacgctgtaaatgctttatagagacgatatcagcaaactgacactgtttgggttcgcccatgtgtaaggttacgtcgacaagatacgtatatactaacattatattttgcgtaagcgattcgactcggaatatgtcgactgctagaagaacccttatacatcaaatcctcgtagtctacaacgagggacattacgggaggtctaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|5 : tagtaatcggttagatttttttgcatttgttgataatgttaaacgtattgaaacagaagaatattggttttggtggggaaTTCT-TTGACCGCTAGAAGTCTTCCTTAGAATCGATGGATAAGACATTGT-GCCGTA-----AGAAACAGATTACGAGAGACCAA--CAT---CC-GTCCT---CAACGTCCTGCTATCCATCCATTTTCTGTTTCT-GCG---CTTACCGCT--------TTATACAAAACA--A--GCTTGGTGTTTGAAGGCATCGTCGTTTGGAATAA-A-AGAG----------GAA-GTTCTACTTACAGACGAGTCGACATTTCATCTTGCGCAGCAACTCGCACGCG-TGGTCGTGTTCAGAGCTTACCA---TC-TGTCAAAGAACGTTAAAAT-G-ATGCCTGTTTTATTCAGCGC-CAAACCA-ATT-GGCA-------------------TGAGGTAGATATTACAACACATAAAGGAACTCATT-------TGGTTTTAGTGGAG-GCAATTTAACCGACATACGCTTCG---TG----ATTCATGAGATTGTACGTCAGTACAGTATTCCAT----ACATTCACAACAACCAAGG--TATCGT--CATTCTGCAACACGACAACGCTCGAACACGCACTtaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagctttgttaacagaatagttga
gi|6 : TCT-TCGACCGCTAGAAGCACCCCTTGGCATCGACGGATAAGTCCTTGT-GCCGTA-----------AG-------GAGGCCCA--CAT---CC-ATCTT---TGACGTCCTGCTTTCCGTCA-TGTTCTACT-CT-G-GAGTC--ACCGTG--------TTG--CGAGGTTGCA--GCGTGGTGTA-TGAGGCAAATTTATTTC-AATAA-C-AGAGATTGAG-T-GTAA-GGTCTGTTTACAGATGAGTCGAGATTTCATATCG-A-AGCA--------GTGACGGTCGTGCTCGG-ACTTAGCT---TCGTGTCGGAGAACTTTACACT-G-ACGCCTACGTCATTCGGAATATT--CTATATTTGGCGGAAGGAGTGTT-CTC-GATTGTGCTGGA-ATGGCAACCCATGGAAGGACCC-TTTTGGTGATAGT---GATGG---ACAATTTAACCAGCG------AA----CG----A------A----------CTGCACACCATTTCAT----TCATTCACAACAACCAGCGTATAACGTCA-A-TGTGCAGCAGAGCAACGCACGAgc
gi|7 : aaAACTGTGTATAACT-A-AAT-GTTAAATACAC-GT-AA--GAA-AA----ATT-CTTTGTT-CGCTCTATAC--TATTAAAGGCATA-------GT-CTA-ATA-TCCTAAATGTGTGTT---AGTACT--GAATTT-------------GTTCAATTCGCCT----T-GATGAGGC--ATAGCACGATTTTCT--------GGAATTTCGAG-AATAAACGACATGTGGT------TAGTT--GTC-GATTAGAATTTCTTGCATTTATTGACAGTGTT---C-AGTGCATTGAA-ACAG-----A-------ccgc
gi|7 : g-A-TG-ATTGAA-ATTG-----A-------TCTTTTGTGTA-------TT-------ATTGGAA--TGC-------------------TGAAA--GT------------TAG-------GATACC-TCA-CATAAATGT--GGCAAAGATGTTTG----GGGTTCATAT----TGAAAC----TAAATGCTTTA--TGAAGACGATGTCATCAAACTTA--GGTACCG-TGGGGACCGCCAACGATaaaaagtttttgaaataatattttgattgagagaggcctaggatgattgaaattgatcttttgtgtattattggaatgctgaaagttaggatacctcacataaatgtggcaaagatgtttggggttcatattgaaactaaatgctttatgaagacgatgtcatcaaacttaggtaccgtggggaccgccaacgata
gi|8 : gaactgtgtataactaaatgttaaatacacgtaagaaaaattctttgttcgctctatactattaaaggcatagtctaatatcctaaatgtgtgttagtactgaatttgttcaattcgccttgatgaggcatagcacgattttctggaatttcgagaataaacgacatgtggttagttgtcgattagaatttcttgcatttattgacagtgttcagtgcattgaaacagaaaaaagtttttgaaataatattttgattgagagaggcctaggAAAAGAAAATGTGTAT--TT-A-AAA-GTTAAATA----------------G---TATT-CTTTGAT-CACT-TTTGT--TATTAAAG--ATA----------CTA-A----AC-AAACACGTGTTT-GAAT--------------------------TCGATCCTCCT----G-TATG-GCC--AACGCATGCTTTTCT--------GGAGTTGCGAG-CCTAAGCAACACGTCGTTACATGTAGTA--ATT-GGTTAGAATTCCTTGCATTCATTGACGATATT---TAA-TGTATTAAA-ACAGAAAAAA-------TGGTTTATGGG-------CTAAC----ATTTTGA--TG---------------------AGAAATGCCTCGCATACATTTGG-------G-TGCT-TTT-GG--GATGCTGGGCAAGGCAAGTTA----GAGTTTAAAT----CAACAC--TGTGAATGCTTTA--TGGAGACGGCATCAGCAGACCGTGAGGCACCGCTTGAGATCGCGAACGATCGG---GA---ATACGTATAGCATTACGTCGGCAAGa
gi|9 : gaCCGTA-----AGGAACACTTTGCGAGGGAACAA--CAT---CC-GTCCT---CATAGTCCTATTATCCGTCC-TGCTATATTATT-GCGT--C--AATGTG--------TTG--TGAG--C--AACGCGTGGAGTA-GAA-----TGTCGTTTC-AATAA-C-ACAGCCTG-G-ATGGAA-TTTCTGTAAACGGACAATTTGAAATGTTATTTAG-ACAGCA--------GTTACAATTGTGTTTGG-GATCACTC---TTGTGCCGTAGAATGTTTCA-TTGT-CGCCTATGTTATTCAGCTC-CA--CCA-ATTTGACAGCGGGAGCGTT-A-T-GTTTAGGGTGAA-ATTACAACACATG