lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 11 11 11111 1111 7777777777777777777777777777 33333 444444444444444 22222 111 111 1 222222 22222222 111 11 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 2222222 11111 1111 333333333 222222222222 33333333 111 1 22222 111 111 222222 22222 1 1 222222222222 3333333333 11 3333333333 222222 2222 1111 1111 00000000000000000000000000000000000000 11 111 22 1 11 333333333 11 111 11 111111 111111111 1111 2 111 11111 1111 222 666666666666 11 333 55555 11111 6666666666666666666 1111111 1111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111111 111 555555555555555555555555555 1111 2 11 1 222222222222 1
lowQualScore : 8 3 11 444 00 11 44 8 77777 4 7777 999 3333333333333333333333333333 1 33333 333333333333333 55555 777 555 0 2 777777 7 8 8 3 8 55555555 111 8 11 6 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 11 6666666 8 77 77777 7777 8 8 0 5 555555555 111111111111 33333333 444 0 8 0 8 00000 6 111 99 5 8 444 333333 00000 8 8 7 4 7 5 1 8 1 5 888888888888 0000000000 11 0 8 5555555555 333333 1111 2 4444 8 8 4444 8 0 11111111111111111111111111111111111111 8 11 5 8 222 1 00 2 9 3 3 9 555 11 3 8 222222222 5 8 0 11 888 0 11 777777 3 222222222 3 5 5 2222 5 99 6 111 6 55555 4444 6 444 4 1 6 6 6 888888888888 22 555 33333 6 6 6 66666 8888888888888888888 6666666 0000 5 5 0 4 8 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 0000000000 555 3 33 555 3 3 3 9 3 44 6 3 555555555555555555555555555 3 0000 44 2 555 33 66 555 2 2 555 66 2 5 2 5555 555 2 555 2 33 3 11 8 66 3 3 6 44 3 333333333333 66 77 3
lowQualScore : . . .. ... .. .. .. . ..... . .... ... ............................ . ..... ............... ..... ... ... . . ...... . . . . . ........ ... . .. . ............................................................................................... . .. ....... . .. ..... .... . . . . ......... ............ ........ ... . . . . ..... . ... .. . . ... ...... ..... . . . . . . . . . . ............ .......... .. . . .......... ...... .... . .... . . .... . . ...................................... . .. . . ... . .. . . . . . ... .. . . ......... . . . .. ... . .. ...... . ......... . . . .... . .. . ... . ..... .... . ... . . . . . ............ .. ... ..... . . . ..... ................... ....... .... . . . . . ............................................................................................................................................................................. . .......... ... . .. ... . . . . . .. . . ........................... . .... .. . ... .. .. ... . . ... .. . . . .... ... . ... . .. . .. . .. . . . .. . ............ .. .. .
lowQualScore : 0 2 88 000 22 00 00 0 88888 6 0000 222 0000000000000000000000000000 0 33333 777777777777777 00000 555 888 0 2 555555 0 0 0 0 0 00000000 888 0 00 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 00 0000000 2 44 88888 0000 0 0 8 6 666666666 888888888888 00000000 000 6 0 8 0 66666 7 777 88 0 0 000 000000 00000 0 0 0 5 0 0 0 0 0 0 222222222222 4444444444 00 8 0 0000000000 000000 2222 5 8888 0 0 0000 0 8 88888888888888888888888888888888888888 0 00 0 0 222 5 22 5 2 5 5 5 222 00 2 0 000000000 4 0 8 88 000 8 88 888888 2 000000000 7 7 7 1111 7 22 7 777 5 77777 2222 7 777 0 0 7 0 0 222222222222 33 333 33333 7 7 7 77777 3333333333333333333 2222222 6666 0 0 7 4 9 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 2222222222 444 1 99 888 3 3 2 6 3 66 7 6 666666666666666666666666666 6 6666 22 9 000 99 88 666 9 9 000 00 9 7 9 9999 000 9 000 9 99 1 77 8 55 1 1 7 22 1 222222222222 88 33 1
consensus : AGTAGATAACA-AACTTTCACT---ACATC-TAGGCAAAA--CTGAATGT-ATGTTGT-TTGGTCC----ACTAAG----AAAA-C-TTCAAAAGCA--CA----AAGATT---TTT-----CCATAACA-----TGTA-ATA----GT-----GTAAAGT-----ATCTTGG---TCT-ACAGACAGACAA-TGTG-----CTGTCAGGTGAAAATA-T-AGT-CATG-----T--CTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA-A--------AAT-------TTT-------------TGT---ATA-----------------GA--CGT--------C-----AAATGTAGAC--AGTTGT-------TATCTAGTGCCC-T---CATT----CA-GTGT-TATTTTGATTATGCATG---TTCATCGT-G-GTA---T-GCAGGGCTTACT--AAT--GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-AGT---AGT-AAGATTTGTTTTAGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGACAGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGT-AAA--TGCCATCAAAG-ACTGGAATAATTT-A-CCGGA-AAATGTCAAGGTGGAAAGGGGCAAGATAAATT--TTAAGAA-A---------TCTGTAAAAA-CACA-TCTTTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTA-TCTT-TA-AGAGACAATT-CTAAAAT-T----CTG-TTCATTT--TACAATTG---TNAAATCCTTG---TA----TTTT-TCATGTCA--ATATNAACC-ATGATTATTGGTATACA-AAGTCTT--TGCCAAAGTTCTGATC---TCATTTG-----T-TATTTAG-A-TAG-----AATCAC------T----GTTATNTATTTG-------CACT----T-C-AATAACAAC-T-A-----------C--AAGGACNCCCCATTGGA-AATAAGCCTTGAGCTTATGGGT--CTA----CCTTAGGATA-----CTGAAACATATTTNA-CTATA---G-T-GCTC--C--AT---ATAN------CCATATAAT--T-C-T----T---AT--------T--------GC-GAT--C---TT-AATCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATTTTGATT-TAATATTG-T--TGG-GTTTTTTN-G--T------GTCC-AATAT-GTGA--TGT-GATGTGA---T--AAAA--T--GCT-G-AAA---TC-TAT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-TGACAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGAGTC-C--TTAAATAAAATTCAATTC
Reference ( gi|3 ) : AGTAAATAACA-AACTTTCACT---ACATT-TAGGCAAAA--CTGAATGC-ATGTTGT-TTGGTCC----ACCAAG----AAAA-C-TTCAAAA--A--CA----AA-ATT---TGT-----CCATAATA-----TGTACATA----GT-----GTAAAGT-----ATCTTGG---TCT-ACAGATAGACAA-TATG-----CTGTCAGGTGAAAATA-T-AAT-CATG-----T--CTATT--ATAGGAAAAGTAAAT-GCT--AAAT---------TAA----------AAT-------TTT-------------TGT---ATA-----------------GA--CAT--------C-----AAATGTAGAC--AGTTGC-------TCTCTAGTGCCC-T---CATT----CA-GTGT-TATTTTGATTATGCCTG---TTCATCGT-G-GTA---T-GCAGGGCTTACG--AA---GA---CTCTAAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-AGT---AGT-AAGATTTATTTTAGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTAAATGACAGGGTCAAACAACATAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAAATTTGCT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTTTG-TAC-AACCTCGTATTAAGGGTA---GAG---A---T--------G--GA--TC------TTTTTTTGT-AAA--TGCCATCAAAG-ACTGGAATAATTT-A-CCAGA-CAATGTCAAGGTCGAAAAGAGAAAGATAAATT--TTAAGAA-A---------TCTTTAAAAA-CACA-TCTTTTTCAAGAAGCAAAAA-CAAGAAGTTTACAAACTTA-TCTT-TA-AGAGACAATT-CTAAAAT-T----CTG-TTCATTT--TAC-ATTG---TTAAATCCTCG---TA----TTTT-TCATGTCA--ATATAAACC-ATGGTCATTGGTATAAACAGGTTTTTCTGCCAAAGTTTTGATTA--TCATTTG--ATTT-TATTTAG-A-TAG-----AATCA-------T----GTTA-A-ATTTG-------CACT----T-C-AATAACAGC-T-A-----------T--AAGGATCTCCCATTGGATAATAAGCCTTGAGCTTATGGGT--CTA----CCTTAGGATA-----CTGAAACCTATTCT--TTAT----G-T-GTTC--T--AT---TTAT------CCATATAAT--T-C-T----T---AT--------T--------GC-GAT--C---TT-AATCAA---AA-CCAAACTGTGAT--GTAAGT-G-TGATACTTA-TT--TT-ATTTTGATT-TAATATTG-T--TGG-GTTTTTTT-T--T------GTCC-AATAT-GTGA--TGT-GATGTGA---T--AAAA--T--ACT-G-AAA---TC-CAT-G-TATC-TGCCAAAAA-T-TTA---T-GT---GAAA-ATG--TGAG-AC-TGCCAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGAGTT-C--TAAAATAAAATTCAATTC
gi|25 : AGTAGATAACA-AACTTTCACT---ACACA-TAGGCAAAA--CTGAATGT-ATGTTGT-TTGGTCC----ACTAAG----AAAA-C-TTCAAAAGCA--CA----AAGATT---TTT-----CCAT
gi|19 : ggttAGTAGATAACA-AACTT-CACT---ACAGCATAGGCAAAAAACTGAATGTTATGTTGTATTGGTC-----ACTAAA----AAAAAC-TTCAAAAGCA--CA----AAGATT---TTT-----CCAT
gi|6 : gattgtcaacttttacttttgcagatgacagatgaattaattcttatttcacatagggaatcctgagaaaatatttcaacaccttgtgtgtcaactcgaatcttgttcaaatggttAATAAATAACATAATTGTCACT---TCATC-TCGGAAAAA--CTGAATGT-ATTCTGT-TCTGTCC-----CTAGG----TAAA-C-
gi|5 : gctccatctggattccgaagttaagttgtcttgttacgtttattgcattatatttagagaataacacatctcaaagaaacgttcacaggtatggttatgttagattacaaaaagcatcacaactattcattaaatattcgtgtaataaattagtatatggggattgaaagcggctgttaaaatcatacttaagtaggccaagtatctagtagtaagaatctaaccaagagaaatagaagtgtggctgaccccaaggcagtatttttaaagttccccattaattattttgagttatgtcaatgacagtcaacaacaagcgtagatgcattgcaaagttgatccttcatgcagacgaaatgcaaatcctttattcacacagaatctaaaggtctttcaacataggtcctagaaaatgcttctgatgctTAAATAACG-AA-TATCATTGTTATCTT-TAGGCAAAA--CTGAATGT-ATTTTAT-TTGGTTCCAAAACAAAGTTTTAAAA-TGTTCAAAA--TTTCC----AA-GTTGTATGTAATGGTCATAACAATGAATGTAAAGAAAAAGT-----TAAAAATTGAAAATCTTGGAATTGT----GATTGACAACTAT------TTAACTGGTGAAAGCA-TTGAT-GAAG-----CAACTGTT---CAG--AAAGTAAAT-AAC--AGGT---------TGC----------AAT-------TTTGAACCGACAAGCCTGTTTCCTA-----------------GATACAT--------TTTGTAAAA---AGACTAAGTCAC-------TTT---GTGTCCAG---CACTTCTACA-ATGT-CATATTGATTATACCTGCAGTGCATGGT-ACGTA---T-TCAGGGCTATCT--AA---GA---CCTTAAAGC-AAAAAC-TATAAAT-ATGTCAAAACAA-GAT---GGT-----TTGATTT--GATCTcgg
gi|1 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttaAACA-AACTTTCACT---ACATT-TAGGCAAAA--CTGAATGT-ATGTTGT-TTGGTTC----ACCAAG----AAAA-C-TTCAAAA--A--TACAGAGA-ATT---T-T-----CCATAACA-----TGTA-ATG----GTACAGAGTAAAGT-----ATCTTGG---TCT-AAAGATACACAA-TGTGGGGTGCTGTCAGGTGAAAATAAT-AGT-CATG-----T--CTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA----------AAG-------TTT-------------TGT---ATA-----------------GA--CATTTAGACATC-----AAATGTAGAC--AGTTGT-------TATCTAGTGCCC-T---CATT----CA-GTGT-TATTTTGATTATG---------------------------CAGGGCTTACT--AATAAGA---CTCTTAAGA-ATAAAC-TACAAGTCACC-CAAAATAC-AGT---A--------------TAGATCTTGGACAAAGACCAGGTGTTGACAACCAA-GCAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGACAGAGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCATTACATGTATACGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACTATCCAGAGCA---AGT-CATTAT-AATTATG-TAC-AACCTCGTA-TAAGGGTAAAGAAG---A---T--------G--GA--TCTTTTTTTTTTTTTGT-AAA--TGCCATCAAAG-ACTGGAATAATTT-A-CCAGG-AAATGTCAAGGTGGAAAGGGGCAAGATAAATT--TTAAGAA-A---------TCTGTAAAAA-CACG-TCTTTTTAATGAAGCAAAAAGGAAGAAGTTTACA-------------A-AGAGAAAATT-CTAAAAT-T----CTG-TTCATTT--TACAATTG---TAAAATCCTTA---TA----TTCT-TCATGTC---ATATTAACC-ATGATTATTGCTATACAAAGCCT----TGCCAAAGTT---ATTATCTCATTTG-----T-TATTCAG-A-TAG-----AATCAC------T----CTTATT-ATTTG-------CACT----T-A-AAAAACAAC-TAA-----------C--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTG-AACATATTTTA-CTATA---G-T-GCTCAAT--AT---TTA---------ATCTTAT--TACAT----A---AA--------T--------GC-GAT--CCTTTT-AGTTAGTTTAG-TCAATATGTGAT--GTGAacatacccatgtt
gi|12 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttagaagaaAATA-----TGTACATA----GT-----GTAAAGT-----ATCTTGG---TCT-ACAGACAGACAA-TGTG-----CTGTCAGGTGAAAATA-T-AGT-CATG-----T--CTATT--ATAGGAAAAGTAAAT-GCT--AGATATAGACACATAAGA--------AAC-------ATT-------------T-------A-----------------GA--TGT--------C-----AAATGTAGAC--AGTTGT-------TATCTAGTGCCC-T---CATT----CA-GTGT-TATTTTGATTATGCATG---TTCATCGT-G-GTA---T-ACAGGGCTTACC--AA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-AGT---AGT-AAGATTTGTTTTAGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCATT-ATGC-TATGTGTtaaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|2 : AGGT-----ATCTTGG---TCTTACAGACAGACAA-TGTG-----CTGTCAGGTGAAA-TA-T-AGTTCATGATGCCT--CTATTTTATAGGAAAAGTAAATTGCTTTAGAC---------TAATAGGACACATAATGGAAGCATTT-------------TAT-----------------------GA--TGT--------C-----AATTGTAGAC--AGTTGTGGGTGGATCTTAAGTGCCC-TATACATT----CAAGTGTATTTTTTGAT-ATGCATG---TTCATCGTTG-GTAATGTAGCAGGGCTTACCTTAATT-GAGCTCTTTCAAGATACAAATATACAAGT-ACA-CAAAATAAGAGTTACAGTTAAGATTTGTTTTAGAT-TTGGACAAAGAGCAAGTGTTGACAACAAAAGTACAAATTCACTCATATAAATCCGCGTCCATTATGCATATGTGTTAATGACAGGGTCAAACAACTTAGATTAAATCATTTATTACAATATTGCTCATGAAAAT-CTCCTCAT------TATATGTGTCATAATTTTACTGCCTTGCCTAAATCAAAACTCATAACAACTGTAGTTTA------TAATACT----A-AGCATTAAGTTCATCATTAATTTTGATACTAACCTCGTATTAAGGTTA---AAGTGGA---TAGAGTTGGG--GA--TC-------TTTTTTGTAAAA--TG-CACCAAAGAACTGGAATAATTT-ATTCAGAGAAATGT-ACCGTGGACAAGGAGAAGAT---TCTGTTAAAAACACATCTACGTTCTTTGAATG-C-CATTCTTTTTTGATGAGC-AAAA-CAAG-AGTTTACAAAATTATTCTTGTATAAAGACCATT-CAAAAATAT----GTGTTTCATTT--TACAATTGGCCTCCAATCCTTGTGTTA----TTTT-TC-TGTCA--ATATAAACCAATGATTATTGGTATACA-AAGTCTTGCT-CCAAAGTTT--ATC---TCATT----AGCT-TATTTAG-ATTTG-----AATCA-------CTGGGGTTA-ATATTTA-------CACT----TGCAAATAACAGCTT-AC----------C--AAAGGTACCCCATTGGA-AATAA------AGC---CGGGT---TATT--CCTTAGGATA-----CTG-AACATATTTA--CTATA---G-T-GCTC--C--AT---ATA-------CCAT-TAGT--C-T-A----T---AC--------T----------------------------A---AA-CAAAACTGTGATTGGTGAAT-GATGATATTTA-TTGATT--TTTTGAAT-CGATATTGTT--TGG-GTTTTTTT-T--TAGATAAGTCT-AATATGGTGAGGTGTAGATGTGGAGTT--AAAC--A--ACC-G-AAA---CC-CATCGCTATCTTGCCAAAAT-C-TTAAGTT-GT---GAAA-ATG--TGAGTAT-TG--AAAA-TT---T-TCTGTATCGA-TTTGTTTAGCTATATATTGCGTTA-TAATGTGTTG-GTC-CTTTAAATTAAAATTta
gi|15 : ttggA-T-AGT-CATG-----T--CTAGT--ATATGAAAAGTAAAT-GTT--AGAT---------TAA----------AAT-------TTT-------------TGT---ATAAACATAAGAAACATCTAGA--CGT--------C-----AAATGTAGAC--AGTTGC-------TATTTAGTGCCC-T---CATC----CA-GTTT-TATTT-----------------CATCGT-G-GTA---T-GCAGGGCTTATT--AA---GG---CTCTCAAGA-ACAA------------------AATAA-AGT---AGT-AAGATTTGTTTTAGATCTTGGACAAAGAGCAATTGTTGACAGCCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTACTGACAGGGTCAAACAAC
gi|7 : tgtgcaggtcAAAATAA-AGT---AGT-AAGATTTGTTTTAGACCATGGACAAAGAGCAAGTGTTGACAACCAA-GCAC---TTCAT------AAG-----GTCAAT-ATGT-TTTGTGTTAGTGACAGGGTCAAACAACTTAGATTAAATCAT-------------GCTTAT-----------------------TATGTGTCATAAA-----------------ATCAAA-CTCATAG----------TTACATGTATAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA-----------------------------------------------AAA--TGCCATCAAAG-ACTGGAATAATTT-T-CCCGA-AAATGTCAAGGTGGAAAGGGGCAAGATAAATT--TTAATAA-A---------TCTGTAAAAA-CACA-TCTTTTTAATGAAGCAAAA------------GCAAACTTA-TCTT-TA-AAAGACAATT-CTAAAAT-T----CTG-TTCGTTT--TACAATTG---TAAAATCGTTA---TA----TTTT-TCATGTC---ATATTAACC-ATGATTA
gi|16 : CAGAGCCAAACAACTTAGATTAAATCATGTTT-ATAATACTGCTCATGGAATTGTT-----T------TACAT---TCATA------CT--ATTG--TAA-TAAAA-ATCATTG----------TTG------TAATACT----TGTACA---AGT-CATCAT-AATTATA-TAC-AACCTCGCATTGAAGGTA---AAG---AAGAT--------G--GAGATT------TCTTTTTGT-AAA--TGACATCAAAG-ATTGAAATAATTT-A-CCGGA-TAATGTAAAGGT-GGAAGGGGCAAGATAAAcataatcaaaaccaaactgtgacgtgtctgtgaatttatttttattttgat
gi|26 : gtattggcaagtagatatattattagtaaatcggtttggtcagtcacATCATGTAT-ACAATATTGCTCATGGAGATGCTTCTCAT------TATATGTGTTATAATTTTACT--CTTG--TAAATCAAA-CTCATGG----------TTA------TAATAC
gi|4 : AGCA----GT-CATCAT-AATTAT--TAC-AAACTCGTATTAAGGATA---AAG---A---A--------GATGA--TC------TTTTTTTGT-AAAATCGCCATCAAAG-ACTTGAATAATTTTA-C--GA-AAATGTCAAGGTGGAAAGGGGCAAGATAACTT--TTAAGAG-A---------TCTGTAAAAACCAC--TCTTTTTAATGAAGCAAAAG-CAAG-----------CTTA-T---------AGACGATT-CTAAAAT-T----CTG-TTCATTT--TACAATTG---TAAAATCCTTA---TAGTTTTTTT-TTATGTC---ATATTAATT-TTGATTATTACTATACA-AAGTCT---TGCTTAAGTTCTGA-TG--TCATTTGTTATTTACATGTAGAA-TAGAATATAATCAC------T----GTTATC-ATTTGCACTACTCACT----T-C-AATAACAAC-TAA-----------C--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTT-AACATATTTTACTTATA---G-T-GCTC--C--AT---ATAA------CCGTATAA---T-C-T----T---ATTACATAAAT--------GT-GAT--C---TT-GACTAA---AA-CCAAACTGTGAT--GTGATT-T-TAATA------T--TT-ATTTTGATT-GAATATTG----------TTTTAA-G--T------GTCC-AAT------A--TAT-GATGTGC---T--AAAA--T--GCT-G-AAA---TC-TCT-G-TATC-TGCCAAAGA-T-TTA---T-GT----AAA-ACG--TGAG-AT-TGACAAA------CT-TATGTAT-AA-TTTG----------------------------TTGAGTC-C--TTAAATAAAACTTAATTCa
gi|30 : AGA-AAATGTCAAGGTGGAAAGGAGAAAG-----------------A---------TCTTTAAAAA-CACA-TCTTTTTaa
gi|27 : AGAAA-CAAGAAGTTTACAAACTTA-TCTT-TA-AGAGACAAAT-CTAAAAT-T----CTA-CTCATTT--TAC-ATTG---TTAAATCCTTG---TA----TTTT-Tga
gi|31 : CAAACTTA-TCTC-TA-ACAGACCATT-CTAGAAT-T----CTG-TTCATT
gi|20 : gCAATTGCTAAAAA-TGATATTG-T--ATGTAATAC-TTTG---TTAAATCCTTG---TA----TTTTTTCATGTCA--ATATAAACC-ATGATTATTGGTATACA-AAGTCT---TGCCAACGTTCTGATT---TCATTTG-----T-TATTTAG-A-TAA-----AGTCAC------T----GTTA-ATATTTG-------CACC----T-C-AATAACAGC-T-A-----------
gi|8 : ATATCAGTATATAAA---GTGATTATTGGAATAAA-AAGTCTT---GCCAAAGTTCTGATC---TCATTTG-----T-TATTTAG-A-TAG-----AATCAC------T----GTTA-TTATTTG-------CACT----T-C-AATAACAAC-T-AA----------T--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTGAA-CATATTTA--CTATA---G-T-GCTC--C--AT---ATAA------CCATATAATATT-A-T----T---ATATAAA---T--------GC-GAT----------ATCAA---AA-CCAAACTGTGGT--GTGACT-G-TGATATTTA-TT--TTTATTTTAATT-TAATGTTT-T--TG----TTTTTT-TAGT------GTAC-AATAT-GTGA--TGT------GA---T--AAAA--T--GCT-G-AAA---TA-TAT-G-TATC-TGCCAAAAA---CTA---T-GT---GAAACATG--TGAG-AT-TGACAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGCTGAGTC-C--TTAAATACAATTCAATTCa
gi|9 : TCTGATC---TCATTTG-----T-TATTTAG-A-TAG-----AATCACTGTAACT----GTTATT-ATTTG-------TACTTCGAT-C-AATAACAAC-T-AACNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----NNNNNNNNNNNNNN--NNNT----G-TAGTGC--TTCAT---ATAA------CTATATAA---T-C-TAGTGC---ATAAA-----T--------GC-GAT--C---TT-ACTCAA---AA-CCAAACTGTGAT--GTGACT-G-TGA-----A-AT--TT-ATTTTGAGT-TAATA-------TAG-GTTTTTTTAG--C------GTCC---TAT----A--TGT-GATGTGA---C--ACAA--T--GCT-G-AAA---TC-TAT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-TGAGAAAG-GTTCAT-TATGTAT-AA-TTTGTGTG--TAT-T------------ATGTGATGAATC-C--TTAAATAAAATTCAATa
gi|11 : -ATTTG-------CACT----T-C-AATAACAAC-T-A-----------ACAAAGGACC-CCCATTGGA----AA--CTTGA-----TGAGT---TAT---CCTTAGGATA-----CTGAA-CATATTTTACTAAA----G-T-GCTC--C--ATATCTTAT------TAA-ATAA----------------AT-----------------GC-GAT--C---GT-AATCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATTTTGATT-TAATATTG-T-------TTTTTTA-G--T------GTCC-AAT------A--TGT-GATGTGA---T--AAAA--T--GCT-G-AAA---TT-TAT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-TGACAAAA-CTTTAT-TATGTAC-CA-TTTGTTTG--TAT-TA-TGCG----TAATGTGTTGAATC-C--TTAAATAAAATTCAATTC
gi|10 : ttattTTG-------CACA----T-C-AATAATAGC-T-AA----------C--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTGAA-CATATT----TTACAATAG-T-GCTC---------------------CATATAAA--T-T-T----T---AT--------TATGTAAATGC-GAT--C---TT-CATCAA---AAACCAAACTGTGAT--ATGAAT-G-TGATATTTA-TT--TT-ATTTTGATT-TAATAT-G-T--TGG--TTTTTTA-G--T------GTCC-ATAAT-GTGA--TGT-GATGTGA---T--AAAA--T--ACT-G-AAA---TC-CAT-G-TATC-TGCCAAAAA-T-TTG---T-G------AA-ATG--TGAG-AT-TGACAACA-TTTTAT-TATGTAT-GATTTTGTTTG--TAT-TA-TGCG-AA-T-ATATGTTGAGTC-C--TTAAATAAAATCCAATTCa
gi|13 : ACAACAAA-T-A-----------T--AAGGA---CCCCTT------TAGGC------TTTATGGGT---TATT--CCTT-GGATA-----CCTGAACATACAC-----A-----G-T-GCTC--C--AT---ATAC------CCTTAT--T--A-CAT----A---AA--------T--------GCAAAT--C---TTAAATCAA---AA-CCAAACTGTGA--------------ATATTTA--------ATTTTCATT-TAATATTG-T-------TCTTTTA-G--A------GTCCAAATAT-TTGA------AATGTGA---TAAAAAA--T--GCT-GAAAA---TC-TAT-G--ATC-TGCCCAAAA-TACTA---T-GT---GAAACATG--TGAG-AT-TGACA-----TTTAT-TATGTAT-AATTTTGTTTG--CAT-T------------ATGTGTTGATTC-C--TGAAATAAAATTCAATTaa
gi|23 : CTTATGAGTTACTAGTATTCGTAGGATA-----CTGACATCT-TTAA--TTGC----GAT-ACTT--T--GC---TTATAATGCTCCATGTAATCTT-C-T----TTACATAAA-----T--------GT-GAT--C---TT-GATAAC---AA-ACATACTGTGAT--ATGAa
gi|14 : a----CCTTAGGATATCATACTGAA-CATATTTTA-CTATA---G-T-GCTC--C--AT---ATAA------CCATATAAT----C-T----T---AT--------TATAAAAATGC-GAT--C---TT-AATCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TG--TG-ATTTTGATT-TAATATTG-T--T-----TATTTA-G--T------GTCC-AATAT-GT--------GATGTGA---T--AAAA--T--ACT-G-AAA---TT-CAT-G-TATC-TGCCACAAA-A-CTA---T-GT---GAAA-ATG--TGAG-AT-TGACATAA-TTTTAA-TATGTAT-GA-TATGTTTG--TAT-TA-TGCG-TATTTATGTGTTGAGTC-C--TTTAATAAAATTCAATTCct
gi|17 : tTATA---G-T-GCTC--C--AT---ATAA------CCATATAGT--C--------T---AT---------------------------------ACTAA---A---CAAACTGTGAT--GTGAAT-G-TGATATTTA-TT--TT-ATTTTGATT-GTATATTG-T--TGG-GTTTTTTTAG--T------GTCT-AATAT-GTGA--TGT-GATGTGA---T--TAAA--C--ACC-G-AAA---CC-CAT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAA-ATG--TGAG-AT-TG-AAAAA-TTTTAT-TCTGTAG-GA-TTTGTTTA--TAT-TA-TGCG-TA-TAATGTGTTGAGTC-C--TTAAATAAAATTCAATT
gi|7 : ac-GTTA--T--AT---TT-T------TCATGTCAT--A-T-T----A---AC--------C--------AT-GATTAC---AT-AATCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTATTT--TT-ATTTTGAT
gi|18 : aaaataaagtagtaagatttgttttagaccatggacaaagagcaagtgttgacaaccaagcacttcataaggtcaatatgttttgtgttagtgacagggtcaaacaacttagattaaatcatgcttattatgtgtcataaaatcaaactcatagttacatgtataatactagagcaagtcatcataattatgtacaacctcgtattaagggtaaaatgccatcaaagactggaataattttcccgaaaatgtcaaggtggaaaggggcaagataaattttaataaatctgtaaaaacacatctttttaatgaagcaaaagcaaacttatctttaaaagacaattctaaaattctgttcgttttacaattgtaaaatcT-AATCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTA-TT--TTTATTTTGAT------ATT--T--TAA-------------T------GTCC-AATAT-GT--------GATGTGA---T--AAAA--T--GCT-G-AAA---TC-TAT-G-TATC-TGCCAAAAA-T-CTA---T-TT---GAAACATG--TGAG-AT-TGACAAAT-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TG---------TGTG--GAGTC-C--TTAAATAAGATTCAAT
gi|21 : tttcatgtcatattaaccatgattacaAATTGAGAT--GTGATTTG-TGATATTTA-TT--A--ATTTTGACGGTAATATTG-TGTTGAAGT-----------------GCCC-A-TAT-GGGA--TA-------GA---T--AGAA--TTTGCT-G-AAAATATA-TAT-GATGTC-TGCCAAAAC-T-CTA---TTGT---GAAACATGGTTGAA-ATGTGACAAAC-TTTTAT-TATGTAT-Gacaa
gi|1 : A--TGT-GATGTGA---T--AAAA--T--GCT-G-AAA---TC-TAT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-TGACAAAC-TTTTAT-TATGTAT-AA-TTTGTTTG--TAT-TA-TGGG-TA-TTATGTGTTGAGTT-C--CAATATAAAATTCAATTCt
gi|22 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttagaagaaaacaaactttcactacatttaggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaatatttaatcttattacataaatgcgatccttttagttagtttagtcaatA--TGT-GATGTGA---T--AAAAGAT--GCTTG-AAA---TTATAT-G-TATC-TGCCAAAAACT-CTA---T-GT---G--A-ACG--T-AG-A--TGACAACATTTTTATGTATGTAT-CA-TTT-TTTG-----------------TAATGTGTTGAGGT-CT-TGAAATAAA
gi|28 : aGT-GGCTTGA---T--AAAAA-T--GCT-G-AAA---TCTCCT-G-TTTC-TGCCTAAAA-T-CTG---C-GTGTCGAAACATG--Ttaaaggattccatca
gi|29 : TTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGAGTCAC--T-AAATAAATTCCAATTCtcaattcgatcagatttatt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): ATTCTTACGATCTCAACGAATTTTTTAGTATATTGTGATCCTATAAACCATATAGTCTTATTACATAAAAAGGTGATTTTATTAAAACATAGCTGATATGTGACTTGATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 2 22222 1 22222 22222 11 11 22222222222222222222222222222222222222222222222222222222222222222 111111 11 111 1111 1111 111 111111 333 111 11111 1111111 111 111111 11111 111111 2222222222 111111 1111 111 111 5555555555555555555555555555555 11 111 5555555555555555555555 11 11 11111 111 11111111 111 1111 111 1111111 11111 111 111111 333 1111111 1111 55555555555555555555555555555555555555555555555555555 222222222222222 111111111 777777777777777777777777777777777777777777777 333333 11111111111 11
lowQualScore : 6 1 6 6 99 99 6 6 6 4 6 222 555 11 2 0 55555 0 55555 3 8 8 00000 11 8 11 66666666666666666666666666666666666666666666666666666666666666666 666666 11 444 6 6 3 4444 1111 000 444444 99 999 111 1 6 77 55555 5 5 888 5 5 6666666 5 000 666666 44444 5 5 1 6 2 6 2 5 999999 7 1 99 99 6 9999999999 999999 7777 111 6 6 77 6 111 4444444444444444444444444444444 3 55 6 6 111 5 0 5 4 1 1 333 6 6 9999999999999999999999 0 66 00 1 00000 5 1 5 5 7 000 1 33333333 5 999 1 5 6 8888 99 5 555 8888888 5 44444 000 444444 222 4444444 4 3333 8888 4 22222222222222222222222222222222222222222222222222222 88888 444444444444444 7 888888888 44 3 9 3 2 44 777777777777777777777777777777777777777777777 3 555 2 444 2 33 0 2 2 5 33 5 555 3 000000 44 888888 3 00000000000 444 00 33 2 777 2 2 2 5 2 2 2 444 2 444 5 33 2 2 2 2 77 2 2 6 33 2 44 2 8888 3 2 2 2
lowQualScore : . . . . .. .. . . . . . ... ... .. . . ..... . ..... . . . ..... .. . .. ................................................................. ...... .. ... . . . .... .... ... ...... .. ... ... . . .. ..... . . ... . . ....... . ... ...... ..... . . . . . . . . ...... . . .. .. . .......... ...... .... ... . . .. . ... ............................... . .. . . ... . . . . . . ... . . ...................... . .. .. . ..... . . . . . ... . ........ . ... . . . .... .. . ... ....... . ..... ... ...... ... ....... . .... .... . ..................................................... ..... ............... . ......... .. . . . . .. ............................................. . ... . ... . .. . . . . .. . ... . ...... .. ...... . ........... ... .. .. . ... . . . . . . . ... . ... . .. . . . . .. . . . .. . .. . .... . . . .
lowQualScore : 7 0 7 7 22 22 7 7 7 2 7 666 000 00 0 0 00000 0 00000 2 0 0 00000 00 0 00 00000000000000000000000000000000000000000000000000000000000000000 000000 00 000 7 7 2 2222 7777 222 333333 22 555 777 0 7 77 77777 0 0 888 0 0 2222222 0 000 444444 33333 7 7 7 7 5 7 5 2 222222 5 5 22 22 7 2222222222 222222 0000 777 7 7 77 7 777 5555555555555555555555555555555 2 88 7 7 333 7 7 7 3 4 3 000 7 7 2222222222222222222222 8 55 33 4 00000 7 7 7 7 3 000 0 11111111 7 999 0 7 7 2222 22 7 777 6666666 7 33333 000 444444 000 4444444 4 9999 5555 0 22222222222222222222222222222222222222222222222222222 33333 222222222222222 5 555555555 22 1 2 6 2 22 333333333333333333333333333333333333333333333 1 444 7 777 7 44 5 7 9 7 99 7 000 1 777777 11 888888 1 22222222222 777 00 77 7 333 7 7 7 3 7 7 7 777 7 777 0 77 7 7 7 7 77 7 9 2 99 9 33 5 5555 4 9 9 9
consensus : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTA----TGCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAACACA-TCT----------------------TTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTT-TCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT--TG--CCAAAGTTCTGATC-TCATTTG---TTATTTA-------GA-TAG-----AATCACT---GT------TAT-TATTTG-------CACTT-C----AATAAC----AAC-TAA-CAA-GGACCCCCCATTGGA-AATAAGCCTTGAGCTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC---------TATA--GTGCTCC-ATATAACCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TTGG-TTTTTTA-GT------GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
Reference ( family-1243 ) : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAACATGTA-ATAGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTA----TGCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAAT--GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CGGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAACACA-TCT----------------------TTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTT-TCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT--TG--CCAAAGTTCTGATC-TCATTTG---TTATTTA-------GA-TAG-----AATCACT---GT------TATNTATTTG-------CACTT-C----AATAAC----AAC-TA--CAA-GGACNCCCCATTGGA-AATAAGCCTTGAGCTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTNAC---------TATA--GTGCTCC-ATATANCCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TTGGGTTTTTTN-GT------GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
gi|1 : TAA-ATGT---AGT-GAAAGTTTGTTTTCTTCTAAACATTTTGAACAAGATTCGAGT--TGACAACCAA-G
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcacAGAAGAAAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TTCACCAAGAAAA-CTTCAAAA-ATACAGAGAATTTTCCA--TAACATGTA-ATGGTACAGAGTAAAGTATCTTGGTCT-AAAGATACACAATGTGGGGTGCTGTCAGGTGAAAATAATAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AGT-------TTTGTATAGACATTTA-----------------GACATCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTA----TGCA------------------------GGGCTTAC--TAATAAGA---CTCTTAAGA-ATAAAC-TACAAGTCACC-CAAAATAC-A-GT---A---------------T-------AGATCTTGGACAAAGACCAGGTGTTGACAACCAA-GCAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGAGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCATTACATGTATACGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACTATCCAGAGCA---AGT-CATTAT-AATTATG-TAC-AACCTCGTA-TAAGGGTAAAGAAG---A---T--------G--GA--TCTTTTTTTTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGG-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAACACG-TCT----------------------TTTTAATGAAGCAAAAAGGAAGAAGTTTACA-------------A-AGAGAAAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---A----TTCT-TCATGTC---ATATTAACCA-TGATTATTGCTATACA-AAG-CCT--TG--CCAAAGTTATTATC-TCATTTG---TTATTCA-------GA-TAG-----AATCACT---CT------TAT-TATTTG-------CACTT-A----AAAAAC----AAC-TAACNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTG--------AAC----ATATTTTAC---------TATA--GTGCTCA-ATAT-----T-T--AA---TCT----T---ATTACATAAAT--------GC----------GA-TCCTTTTAG-TTAGTTTAG-TCAATATGTGAT--GTGAggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaatatttaatcttattacataaatgcgatccttttagttagtttagtcaatatgtgatgtgataaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttATATTTAATC--TT-ATTACATAAATG-CGATCCTT-TTAGTTAGTTTA-GT---------CAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAC-TTTTAT-TATGTAT-AA-TTTGTTTG--TAT-TA-TGGG-TA-TTATGTGTTGA-GTTC-CAATA-TAAAATTCAATTCtaaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|10 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttagaagaaaacaaactttcactacatttaggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaTTG-------CACAT-C----AATAAT----AGC-TAACNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTGA-------A-C----ATATTTTAC---------AATA--GTGCTCC-ATATA---------AAT--TTTAT--T---ATGTAAA---T--------GC----------GA-TC---TTCA-TCAA---AAACCAAACTGTGAT--ATGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATAT-G-TTGG-TTTTTTA-GT------GTCCAT-AAT-GTGA--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TC-C-AT-G-TATC-TGCCAAAAA-T-T-----T-GT---GAA--ATG--TGAG-AT-T-GA-CAACA-TTTTAT-TATGTAT-GATTTTGTTTG--TAT-TA-TGCG-AA-T-ATATGTTGA-GTCC-TTAAA-TAAAATCCAATTC
gi|11 : T------TAT-TATTTG-------CACTT-C----AATAAC----AAC-TAA-CAAAGGAC-CCCCATTGGA-AA-----CTTGA-----TGAGT---TAT---CCTTAGGATA-----CTGA-------A-C----ATATTTTAC---------TAAA--GTGCTCC-ATAT---CTTATTAAAT--A----------AA--------T--------GC----------GA-TC---GTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT----TTTTTA-GT------GTCCAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TT-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-CTTTAT-TATGTAC-CA-TTTGTTTG--TAT-TA-TGCG----TAATGTGTTGA-ATCC-TTAAA-TAAAATTCAATTCaa
gi|12 : AATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGATATAGACACATAAG-------A-AAC-------ATT-T----------A-----------------GATGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTA----TGCATGTTCATCGT-G-GTA---T-ACAGGGCTTAC--CAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCATT-ATGC-TATGTGTTAa
gi|13 : ACAAC----AAA-TA--TAA-GGACCCC---TT------TAGGCTTT------ATGGGT---TATT--CCTT-GGATA-----CCTG-------AAC----ATA---CAC------------A--GTGCTCC-ATATACCCTTAT--TA----CA----T---AAA-------T--------GC----------AAATC---TTAAATCAA---AA-CCAAACTGTGA--------------ATATTTA--------ATT---TTCATT-TAATATTG-TT----CTTTTA-GA------GTCCAAATAT-TTGA------AATGTGA---TAAAAAAT--GCT-GAAAA--TC-T-AT-G--ATC-TGCCCAAAA-TACTA---T-GT---GAAACATG--TGAG-AT-T-GA-CA-----TTTAT-TATGTAT-AATTTTGTTTG--CAT-T------------ATGTGTTGA-TTCC-TGAAA-TAAAATTCAATT
gi|14 : ----CCTTAGGATATCATACTGA-------A-C----ATATTTTAC---------TATA--GTGCTCC-ATATAACCATAT--AAT---CT----T---AT--------TATAAAAATGC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TG--TG-ATT---TTGATT-TAATATTG-T----TTATTTA-GT------GTCCAA-T------A--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TT-C-AT-G-TATC-TGCCACAAA-A-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA-CATAA-TTTTAA-TATGTAT-GA-TATGTTTG--TAT-TA-TGCG-TATTTATGTGTTGA-GTCC-TTTAA-TAAAATTCAATTCa
gi|15 : tA-TAGT-CATG-----TCTAGT--ATATGAAAAGTAAAT-GTT--AGAT---------TAA--------A-A-T-------TTT-TGTA------TAAACATAAGAAACATCTAGACGTCAAATGTAGACAGTTGC---T--ATTT--AGTGCCCT---CATCCA-GTTT-TATTT------------------CATCGT-G-GTA---T-GCAGGGCTTAT--TAA---GG---CTCTCAAGA-ACAAA------------------ATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAATTGTTGACAGCCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTACTGAC-AGGGTCAAACAAC
gi|16 : tgtgcaggtcGTATTGGCAAGTAG-ATAT---ATTAT------TAG------TAAAT-CGGT-T-TG-GTCAGTCACCAGAGCCAAACAACTTAGATTAAATCATGTTT-ATAATACTGCTCATGGAATTGTT-----T------TACAT---TCATA------CT--ATTG--TAA-TAAAA-ATCATTG----------TTG------TAATACT----TGTACA---AGT-CATCAT-AATTATA-TAC-AACCTCGCATTGAAGGTA---AAG---AAGAT--------G--GAGATT------TCTTTTTGTAAA--TGACATCAAAGA-TTGAAATAATTT-AC-CGGA-TAATGTAAAGGTGG--AAGGGGCAAGATAAA
gi|17 : AC---------TATA--GTGCTCC-ATATAACCATAT--AGT--C------T---AT----------------------------------------A-CTAA---A---CAAACTGTGAT--GTGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-GTATATTG-TTGGGTTTTTTTAGT------GTCTAA-TAT-GTGA--TGT-GATGTGA---TTAAA--C--ACC-GAAA---CC-C-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA--AAAA-TTTTAT-TCTGTAG-GA-TTTGTTTA--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATT
gi|18 : TAA-TCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTA-TT--TTTATT---TTGAT------ATT-----------TTA-AT------GTCCAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-TT---GAAACATG--TGAG-AT-T-GA-CAAAT-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TG---------TGTG--GA-GTCC-TTAAA-TAAGATTCAAT
gi|19 : tttcatgtcatattaaccatgattacaAGTAGATAACA-AACTT-CACTAC-AGCAT--AGGCAAAAAACTGAATGTTATGTTGTATTGG-TC-ACTAAAAAAAACTTCAAAA-GCACAAAGATTTTTCCA--Tacaa
gi|2 : gattgtcaacttttacttttgcagatgacagatgaattaattcttatttcacatagggaatcctgagaaaatatttcaacaccttgtgtgtcaactcgaatcttgttcaaatggttAGGTATCTTGGTCTTACAGACAGACAATGTG-----CTGTCAGGTGAAA-TA-TAGTTCATGATGCCTCTATTTTATAGGAAAAGTAAATTGCTTTAGAC---------TAATAGGACACATAATGGAAGCATTT-TAT--------------------------GATGTCAATTGTAGACAGTTGTGGGTGGATCTTAAGTGCCCTATACATTCAAGTGTATTTTTTGAT-A----TGCATGTTCATCGTTG-GTAATGTAGCAGGGCTTACCTTAATT-GAGCTCTTTCAAGATACAAATATACAAGT-ACA-CAAAATAAGA-GTTACAGTTAAGA-TTTGTTTT-------AGAT-TTGGACAAAGAGCAAGTGTTGACAACAAAAGTACAAATTCACTCATATAAATCCGCGTCCATTATGCATATGTGTTAATGAC-AGGGTCAAACAACTTAGATTAAATCATTTATTACAATATTGCTCATGAAAAT-CTCCTCAT------TATATGTGTCATAATTTTACTGCCTTGCCTAAATCAAAACTCATAACAACTGTAGTTTA------TAATACT----A-AGCATTAAGTTCATCATTAATTTTGATACTAACCTCGTATTAAGGTTA---AAGTGGA---TAGAGTTGGG--GA--TC------TTTTTT-GTAAAA-TGC-ACCAAAGAACTGGAATAATTT-ATTCAGAGAAATGT-ACCGTGGACAAGGAG-AAGAT-------------TCTGTTAAAAACACA-TCTACGTTCTTTGAATGCCATTCTTTTTTGATGA-GCAAAA--CAAGA-GTTTACAAAATTATTCTTGTATAAAGACCATTCAAAAATATGTGTTTCATTTTACAATTGGCCTCCAATCCTTGTGTTA----TTTT-TC-TGTCA--ATATAAACCAATGATTATTGGTATACA-AAGTC-T--TGCTCCAAAGTTT--ATC-TCATTAGC--TTATTTA-------GATTTG-----AATCACTGGGGT------TA-ATATTTA-------CACTTGCA---AATAAC----AGCTTAC-CAA-AGGTACCCCATTGGA-AATAA------AGC---CGGGT---TATT--CCTTAGGATA-----CTG--------AAC----ATATTT-AC---------TATA--GTGCTCC-ATATA-CCAT-T--AGT--CTA----T---AC--------T------------------------------------A---AA-CAAAACTGTGATTGGTGAAT-GATGATATTTA-TTGATT--TT---TTGAAT-CGATATTGTTTGGGTTTTTTT-TTAGATAAGTCTAA-TATGGTGAGGTGTAGATGTGGAGTTAAAC--A--ACC-GAAA---CC-C-ATCGCTATCTTGCCAAAAT-C-TTAAGTT-GT---GAAA-ATG--TGAGTAT-T-G---AAAA-TT---T-TCTGTATCGA-TTTGTTTAGCTATATATTGCGTTA-TAATGTGTTG--GTCCTTTAAATTAAAATT
gi|20 : ttggTTG---TTAAATCCTTGT---A----TTTTTTCATGTCA--ATATAAACCA-TGATTATTGGTATACA-AAGTC-T--TG--CCAACGTTCTGATT-TCATTTG---TTATTTA-------GA-TAA-----AGTCACT---GT------TA-ATATTTG-------CACCT-C----AATAAC----AGC-TA--
gi|21 : caattgctaaaaatgatattgtatgtaatactAATTGAGAT--GTGATTTG-TGATATTTA-TT--A--ATT---TTGACGGTAATATTG-T---GTTGA--A-GT------GCCCA--TAT-GGGA--TA-------GA---TAGAA--TTTGCT-GAAAATATA-T-AT-GATGTC-TGCCAAAAC-T-CTA---TTGT---GAAACATGGTTGAA-ATGT-GA-CAAAC-TTTTAT-TATGTAT-Ga
gi|22 : A--TGT-GATGTGA---TAAAAGAT--GCTTGAAA---TTAT-AT-G-TATC-TGCCAAAAACT-CTA---T-GT---G-AACGT-----AG-A--T-GA-CAACATTTTTATGTATGTAT-CA-TTT-TTTG-----------------TAATGTGTTGAGGTCT-TGAAA-TAAAt
gi|23 : aCTTATGAGTTACTAGTATTCGTAGGATA-----CTGACATCTTTAATTGCGATACTTTGCT--------TATA--ATGCTCC-ATGTAATC--------T--TCT----TTACATAAA-----T--------GT----------GA-TC---TTGA-TAAC---AA-ACATACTGTGAT--ATGACT-taaaggattccatca
gi|24 : aCTTACGAT------CTCA-------A-CGA--ATTTTTTAG---------TATATTGTGATCCTATA-AACCATAT--AGT---CT----T---AT--------T--------ACATAAAAAGGTGA-TT---TTA--TTAA---AA-CATAGCTGATAT--GTGACT---TGATAT
gi|25 : attAGTAGATAACA-AACTTTCACTAC-ACA-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--T
gi|26 : ggttATCATGTAT-ACAATATTGCTCATGGAGATGCTTCTCAT------TATATGTGTTATAATTTTACT--CTTG--TAAATCAAA-CTCATGG----------TTA------TAATAC
gi|27 : AGAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAAATCTAAAAT-TCTACT-CATTTTAC-ATTG---TTAAATCCTTGT---A----TTTT-Ta
gi|28 : GT-GGCTTGA---TAAAAA-T--GCT-GAAA---TC-TCCT-G-TTTC-TGCCTAAAA-T-CTG---C-GTGTCGAAACATG--TTCA-AT-TCGATCAGA---TTTAT-T
gi|29 : TTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCA-CTAAA-TAAATTCCAATTC
gi|3 : tatttcgaaatatctaaAGTAAATAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGC-ATGTTGT-TTGG-TCCACCAAGAAAA-CTTCAAAA---ACAAA-ATTTGTCCA--TAATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGATAGACAATATG-----CTGTCAGGTGAAAATA-TAAT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AAAT---------TAA--------A-A-T-------TTT-TGTA------TA-----------------GACATCAAATGTAGACAGTTGC---T--CTCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTA----TGCCTGTTCATCGT-G-GTA---T-GCAGGGCTTAC--GAA---GA---CTCTAAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTATTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTAAATGAC-AGGGTCAAACAACATAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAAATTTGCT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTTTG-TAC-AACCTCGTATTAAGGGTA---GAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-CAATGTCAAGGTCGA-AAAGAGAAAGATAAATTTTAAGAAATCTTT-AAAAACACA-TCT----------------------TTTTCAAGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTAC-ATTG---TTAAATCCTCGT---A----TTTT-TCATGTCA--ATATAAACCA-TGGTCATTGGTATAAACAGGTTTTTCTG--CCAAAGTTTTGATTATCATTTGATTTTATTTA-------GA-TAG-----AATCA-T---GT------TA--AATTTG-------CACTT-C----AATAAC----AGC-TA--TAA-GGATCTCCCATTGGATAATAAGCCTTGAGCTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----CTATTCT-T---------TAT---GTGTTCT-ATTTATCCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTAAGT-G-TGATACTTA-TT--TT-ATT---TTGATT-TAATATTG-TTGGGTTTTTTT-TT------GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TC-C-AT-G-TATC-TGCCAAAAA-T-TTA---T-GT---GAAA-ATG--TGAG-AC-T-GC-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTTC-TAAAA-TAAAATTCAATTCaa
gi|30 : GA-AAATGTCAAGGTGGA-AAGGAGAAAG--------------ATCTTT-AAAAACACA-TCT----------------------TTTTGA
gi|31 : aCAAACTTAT-CTC-TA-ACAGACCATTCTAGAAT-TCTGTT-CATT
gi|4 : gAGCA----GT-CATCAT-AATTAT--TAC-AAACTCGTATTAAGGATA---AAG---A---A--------GATGA--TC------TTTTTTTGTAAAATCGCCATCAAAGA-CTTGAATAATTTTAC---GA-AAATGTCAAGGTGGA-AAGGGGCAAGATAACTTTTAAGAGATCTGT-AAAAAC-CACTCT----------------------TTTTAATGAAGCAAAAG-CAAG-----------CTTAT----------AGACGATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---AGTTTTTTT-TTATGTC---ATATTAATTT-TGATTATTACTATACA-AAGTC-T--TG--CTTAAGTTCTGATG-TCATTTG---TTATTTACATGTAGAA-TAGAATATAATCACT---GT------TATC-ATTTGCACTACTCACTT-C----AATAAC----AAC-TAACNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTT--------AAC----ATATTTTACT--------TATA--GTGCTCC-ATATAACCGTAT--AA---TCT----T---ATTACATAAAT--------GT----------GA-TC---TTGA-CTAA---AA-CCAAACTGTGAT--GTGATT-T-TAATA------T--TT-ATT---TTGATT-GAATATTG-------TTTTAA-GT------GTCCAA-T------A--TAT-GATGTGC---TAAAA--T--GCT-GAAA---TC-T-CT-G-TATC-TGCCAAAGA-T-TTA---T-GT---AAAAC--G--TGAG-AT-T-GA-CAAA---CTTAT--------------------------------G-TA-TAATTTGTTGA-GTCC-TTAAA-TAAAACTTAATTC
gi|5 : TAAATAACG-AA-TATCATTGTTATC-TTTAGGCAAAA--CTGAATGT-ATTTTAT-TTGGTTCCAA-AACAAAG-TTTTAAAATGTTCAAAA---TTTCCAAGTTGTATGTA-ATGGT-----aa
gi|5 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttaCA-ATGT-CATATTGATTATACCTGCA-GTGCATGGT-ACGTA---T-TCAGGGCTATC--TAA---GA---CCTTAAAGC-AAAAAC-TATAAAT-ATGTCAAAACAA-G-AT---GGT-TTGA-TTTGATCT-------ACATcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctacaatgtcatattgattatacctgcagtgcatggtacgtattcagggctatctaagaccttaaagcaaaaactataaatatgtcaaaacaagatggtttgatttgatctacatacccatgtt
gi|6 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttataaataacgaatatcattgttatctttaggcaaaactgaatgtattttatttggttccaaaacaaagttttaaaatgttcaaaatttccaagttgtatgtaatggtcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctaAATAAATAACATAATTGTCACTTC-ATC-T--CGGAAAAA--CTGAATGT-ATTCTGT-TCTG-TCC-CTAGGTAAA-Cacccatgtt
gi|7 : gctccatctggattccgaagttaagttgtcttgttacgtttattgcattatatttagagaataacacatctcaaagaaacgttcacaggtatggttatgttagattacaaaaagcatcacaactattcattaaatattcgtgtaataaattagtatatggggattgaaagcggctgttaaaatcatacttaagtaggccaagtatctagtagtaagaatctaaccaagagaaatagaagtgtggctgaccccaaggcagtatttttaaagttccccattaattattttgagttatgtcaatgacagtcaacaacaagcgtagatgcattgcaaagttgatccttcatgcagacgaaatgcaaatcctttattcacacagaatctaaaggtctttcaacataggtcctagaaaatgcttctgatgctAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGACCATGGACAAAGAGCAAGTGTTGACAACCAA-GCAC---TTCAT------AAG-----GTCAAT-ATGT-TTTGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCAT-------------GCTTAT-----------------------TATGTGTCATAA-----------------AATCAAA-CTCATAG----------TTACATGTATAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AA-------------------------------------------A--TGCCATCAAAGA-CTGGAATAATTT-TC-CCGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAATAAATCTGT-AAAAACACA-TCT----------------------TTTTAATGAAGCAAAA------------GCAAACTTAT-CTT-TA-AAAGACAATTCTAAAAT-TCTGTT-CGTTTTACAATTG---TAAAATCGTTAT---A----TTTT-TCATGTC---ATATTAACCA-TGATTAcgg
gi|7 : TAA-TCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTATTT--TT-ATT---TTGATcataatcaaaaccaaactgtgacgtgtctgtgaatttatttttattttgat
gi|8 : aaaataaagtagtaagatttgttttagaccatggacaaagagcaagtgttgacaaccaagcacttcataaggtcaatatgttttgtgttagtgacagggtcaaacaacttagattaaatcatgcttattatgtgtcataaaatcaaactcatagttacatgtataatactagagcaagtcatcataattatgtacaacctcgtattaagggtaaaatgccatcaaagactggaataattttcccgaaaatgtcaaggtggaaaggggcaagataaattttaataaatctgtaaaaacacatctttttaatgaagcaaaagcaaacttatctttaaaagacaattctaaaattctgttcgttttacaattgtaaaatcgttatatttttcatgtcatattaaccatgattacaATATCAGTATATAAA--G-TGATTATTGGAATAAA-AAGTCTT---G--CCAAAGTTCTGATC-TCATTTG---TTATTTA-------GA-TAG-----AATCACT---GT------TAT-TATTTG-------CACTT-C----AATAAC----AAC-TAATNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTGA-------A-C----ATATTT-AC---------TATA--GTGCTCC-ATATAACCATAT--AATATTAT----T---ATATAAA---T--------GC----------GA-T-------A-TCAA---AA-CCAAACTGTGGT--GTGACT-G-TGATATTTA-TT--TTTATT---TTAATT-TAATGTTT-TTGT-TTTTTTA-GT------GTACAA-TAT-GTGA--TGT-GAT--------AAAA--T--GCT-GAAA---TA-T-AT-G-TATC-TGCCAAAAA---CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGCTGA-GTCC-TTAAA-TACAATTCAATTC
gi|9 : TCTGATC-TCATTTG---TTATTTA-------GA-TAG-----AATCACT---GTAACTGTTAT-TATTTG-------TACTT-CGATCAATAACAACTAAC-NN--NNN-NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----NNNN-------NNN----NNNNNNNNNNNNNNNNNNTGTA--GTGCTTC-ATATAACTATAT--AAT---CTAGTGC---ATAAA-----T--------GC----------GA-TC---TTAC-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGAAATTTA-TT--TT---------GAGT-TAATATAG----GTTTTTTTA-GC------GTCC---TAT----A--TGT-GATGTGA---CACAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-GAAAG-GTTCAT-TATGTAT-AA-TTTGTGTG--TAT-T------------ATGTGATGA-ATCC-TTAAA-TAAAATTCAATa
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 22222 1 22222 22222 11 11 22222222222222222222222222222222222222222222222222222222222222222 111111 11 111 1111 1111 111 111111 222 111 11111 1111111 111 111111 11111 111111 2222222222 111111 1111 111 111 5555555555555555555555555555555 11 5555555555555555555555 11 11 11111 111 11111111 111 222 111 1111111 11111 111111 1111111 44444444444444444444444444444444 11111 22222222222222 222222222222 77777777777777777777777777777777777777777777777777 3333333333 11111111111
lowQualScore : 6 1 6 6 99 99 6 6 6 4 6 222 555 11 5 55555 0 55555 3 8 8 00000 11 8 11 66666666666666666666666666666666666666666666666666666666666666666 666666 11 444 6 6 3 4444 1111 000 444444 99 000 111 1 6 77 55555 5 5 888 5 5 6666666 5 000 666666 44444 5 5 1 6 2 6 2 5 999999 7 1 99 99 6 9999999999 999999 7777 111 6 6 77 6 111 4444444444444444444444444444444 3 55 6 6 6 5 0 5 4 1 1 333 6 6 1 9999999999999999999999 0 66 00 1 00000 5 1 5 5 7 000 1 88888888 222 1 5 6 1 444 99 5 555 8888888 5 44444 888 444444 3 4444444 4 9999 4 4 4 4 2 1 1 11111111111111111111111111111111 11111 22222222222222 2 111111111111 44 3 2 1 4 77777777777777777777777777777777777777777777777777 555 2 444 2 33 0 2 2 5 33 5 555 3 3333333333 3 3 44 3 00000000000 444 33 66 33 2 2 444 2 2 2 5 2 2 2 444 2 444 5 33 2 2 2 2 77 2 2 6 33 2 44 2 8888 3 2 2 2
lowQualScore : . . . . .. .. . . . . . ... ... .. . ..... . ..... . . . ..... .. . .. ................................................................. ...... .. ... . . . .... .... ... ...... .. ... ... . . .. ..... . . ... . . ....... . ... ...... ..... . . . . . . . . ...... . . .. .. . .......... ...... .... ... . . .. . ... ............................... . .. . . . . . . . . . ... . . . ...................... . .. .. . ..... . . . . . ... . ........ ... . . . . ... .. . ... ....... . ..... ... ...... . ....... . .... . . . . . . . ................................ ..... .............. . ............ .. . . . . .................................................. ... . ... . .. . . . . .. . ... . .......... . . .. . ........... ... .. .. .. . . ... . . . . . . . ... . ... . .. . . . . .. . . . .. . .. . .... . . . .
lowQualScore : 7 0 7 7 22 22 7 7 7 2 7 666 000 00 0 00000 0 00000 2 0 0 00000 00 0 00 00000000000000000000000000000000000000000000000000000000000000000 000000 00 000 7 7 2 2222 7777 222 333333 22 888 777 0 7 77 77777 0 0 888 0 0 2222222 0 000 444444 33333 7 7 7 7 5 7 5 2 222222 5 5 22 22 7 2222222222 222222 0000 777 7 7 77 7 777 5555555555555555555555555555555 2 88 7 7 7 7 7 7 3 4 3 000 7 7 7 2222222222222222222222 8 55 33 4 00000 7 7 7 7 3 000 0 99999999 999 0 7 7 7 777 22 7 777 6666666 7 33333 888 444444 6 4444444 4 4444 0 0 0 4 4 7 7 77777777777777777777777777777777 77777 99999999999999 0 999999999999 22 1 3 8 2 88888888888888888888888888888888888888888888888888 444 7 777 7 44 5 7 9 7 99 7 000 1 3333333333 1 1 22 1 22222222222 777 77 33 77 7 7 777 7 7 7 3 7 7 7 777 7 777 0 77 7 7 7 7 77 7 9 2 99 9 33 5 5555 4 9 9 9
consensus : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTTTCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT--TGC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAACT-AA-C-AAGGGNCCCCCATTGGA-AATAAGCCTTGAGCTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TC-T----T---AT--------T--------GC----------GATC---TT-AATCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT-GG----TT-TTTTAG-T--GTCC-AATAT-GTGA--TGT-GATGTGA---T--AAAA--T--GCT-G-AAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
Reference ( family-1243 ) : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTTTCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT--TGC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAACT-AA-C-AAGGACCCCCCATTGGA-AATAAGCCTTGAGCTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TC-T----T---AT--------T--------GC----------GATC---TT-AATCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT-GG----TT-TTTTAG-T--GTCC-AATAT-GTGA--TGT-GATGTGA---T--AAAA--T--GCT-G-AAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
gi|1 : TAA-ATGT---AGT-GAAAGTTTGTTTTCTTCTAAACATTTTGAACAAGATTCGAGT--TGACAACCAA-G
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcacAGAAGAAAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TTCACCAAGAAAA-CTTCAAAA-ATACAGAGAATTTTCCA--TAACATGTA-ATGGTACAGAGTAAAGTATCTTGGTCT-AAAGATACACAATGTGGGGTGCTGTCAGGTGAAAATAATAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AGT-------TTTGTATAGACATTTA-----------------GACATCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCA------------------------GGGCTTAC--TAATAAGA---CTCTTAAGA-ATAAAC-TACAAGTCACC-CAAAATAC-A-GT---A---------------T-------AGATCTTGGACAAAGACCAGGTGTTGACAACCAA-GCAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGAGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCATTACATGTATACGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACTATCCAGAGCA---AGT-CATTAT-AATTATG-TAC-AACCTCGTA-TAAGGGTAAAGAAG---A---T--------G--GA--TCTTTTTTTTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGG-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACGTCT----------------------TTTTAATGAAGCAAAAAGGAAGAAGTTTACA-------------A-AGAGAAAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---A----TTCTTCATGTC---ATATTAACCA-TGATTATTGCTATACA-AAG-CCT--TGC--CAAAGTTATTATC-TCATTTG---TTATTCA-------GATA-GAAT-----CACTC---T------TATTATTTGCACT-------T-A----AA-AAACAACT-AA-CNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTG--------AAC----ATATTTTAC------------TATA--GTGCTCA-ATAT-----T-T--AA---TC-T----T---ATTACATAAAT--------GC----------GATCCTTTT-AGTTAGTTTAG-TCAATATGTGAT--GTGAggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaatatttaatcttattacataaatgcgatccttttagttagtttagtcaatatgtgatgtgataaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttATATTTAATC--TT-ATTACATAAATG-CGATCCTT-TT-AG----TTAGTTTAG-T-----C-AATAT-GT--------GATGTGA---T--AAAA--T--GCT-G-AAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAC-TTTTAT-TATGTAT-AA-TTTGTTTG--TAT-TA-TGGG-TA-TTATGTGTTGA-GTTC-CAATA-TAAAATTCAATTCtaaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|10 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttagaagaaaacaaactttcactacatttaggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaTTGCACA-------T-C----AA-TAATAGCT-AA-C-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNNN----CTGA-------A-C----ATATTTTAC------------AATA--GTGCTCC-ATATAA--AT-T----T--TA-T----T---ATGTAAA---T--------GC----------GATC---TT-CATCAA---AAACCAAACTGTGAT--ATGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATAT-G-TT-GG----TT-TTTTAG-T--GTCC-ATAAT-GTGA--TGT-GATGTGA---T--AAAA--T--ACT-G-AAA---TC-C-AT-G-TATC-TGCCAAAAA-T-T-----T-GT---GAA--ATG--TGAG-AT-T-GA-CAACA-TTTTAT-TATGTAT-GATTTTGTTTG--TAT-TA-TGCG-AA-T-ATATGTTGA-GTCC-TTAAA-TAAAATCCAATTC
gi|11 : ---T------TATTATTTGCACT-------T-C----AA-TAACAACT-AA-C-AAAGGACCCCCATTGGA-AA-----CTTGA-----TGAGT---TAT---CCTTAGGATA-----CTGA-------A-C----ATATTTTAC------------TAAA--GTGCTCC-ATAT---CTTATTAAAT--A-----------AA--------T--------GC----------GATC---GT-AATCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT--------T-TTTTAG-T--GTCC-AATAT-GT--------GATGTGA---T--AAAA--T--GCT-G-AAA---TT-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-CTTTAT-TATGTAC-CA-TTTGTTTG--TAT-TA-TGCG----TAATGTGTTGA-ATCC-TTAAA-TAAAATTCAATTCaa
gi|12 : AATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGATATAGACACATAAG-------A-AAC-------ATT-T----------A-----------------GATGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-ACAGGGCTTAC--CAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCATT-ATGC-TATGTGTTAa
gi|13 : A-CAACAAAT-A--T-AAGGACCCC---TT------TAGGC------TTTATGGGT---TATT--CCTT-GGATA-----CCTG-------AAC----ATA------------------CACA--GTGCTCC-ATATACCCTTAT----T--ACAT----A---AA--------T--------GCA---------AATC---TTAAATCAA---AA-CCAAACTGTGA--------------ATATTTA--------ATT---TTCATT-TAATATTG-T--------TC-TTTTAG-A--GTCCAAATAT-TTGA------AATGTGA---TAAAAAA--T--GCT-GAAAA---TC-T-AT-G--ATC-TGCCCAAAA-TACTA---T-GT---GAAACATG--TGAG-AT-T-GA-CA-----TTTAT-TATGTAT-AATTTTGTTTG--CAT-T------------ATGTGTTGA-TTCC-TGAAA-TAAAATTCAATT
gi|14 : ----CCTTAGGATATCATACTGA-------A-C----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT---C-T----T---AT--------TATAAAAATGC----------GATC---TT-AATCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TG--TG-ATT---TTGATT-TAATATTG-T--------TT-ATTTAG-T--GTCC-AAT------A--TGT-GATGTGA---T--AAAA--T--ACT-G-AAA---TT-C-AT-G-TATC-TGCCACAAA-A-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA-CATAA-TTTTAA-TATGTAT-GA-TATGTTTG--TAT-TA-TGCG-TATTTATGTGTTGA-GTCC-TTTAA-TAAAATTCAATTCa
gi|15 : tA-TAGT-CATG-----TCTAGT--ATATGAAAAGTAAAT-GTT--AGAT---------TAA--------A-A-T-------TTT-TGTA------TAAACATAAGAAACATCTAGACGTCAAATGTAGACAGTTGC---T--ATTT--AGTGCCCT---CATCCA-GTTT-TATTT------------------CATCGT-G-GTA---T-GCAGGGCTTAT--TAA---GG---CTCTCAAGA-ACAAA------------------ATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAATTGTTGACAGCCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTACTGAC-AGGGTCAAACAAC
gi|16 : tgtgcaggtcGTATTGGCAAGTAG-ATAT---ATTAT------TAG------TAAAT-CGGT-T-TG-GTCAGTCACCAGAGCCAAACAACTTAGATTAAATCATGTTT-ATAATACTGCTCATGGAATTGTT-----T------TACAT---TCATA------CT--ATTG--TAA-TAAAA-ATCATTG----------TTG------TAATACT----TGTACA---AGT-CATCAT-AATTATA-TAC-AACCTCGCATTGAAGGTA---AAG---AAGAT--------G--GAGATT------TCTTTTTGTAAA--TGACATCAAAGA-TTGAAATAATTT-AC-CGGA-TAATGTAAAGGTGG--AAGGGGCAAGATAAA
gi|17 : AC------------TATA--GTGCTCC-ATATAACCATAT--AGT--C-------T---AT----------------------------------------ACTAA---A---CAAACTGTGAT--GTGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-GTATATTG-TT-GGGT--TT-TTTTAG-T--GTCT-AATAT-GTGA--TGT-GATGTGA---T--TAAA--C--ACC-G-AAA---CC-C-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA--AAAA-TTTTAT-TCTGTAG-GA-TTTGTTTA--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATT
gi|18 : T-AATCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTA-TT--TTTATT---TTGAT------ATT----------------TTAA-T--GTCC-AATAT-GT--------GATGTGA---T--AAAA--T--GCT-G-AAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-TT---GAAACATG--TGAG-AT-T-GA-CAAAT-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TG---------TGTG--GA-GTCC-TTAAA-TAAGATTCAAT
gi|19 : tttcatgtcatattaaccatgattacaAGTAGATAACA-AACTT-CACTAC-AGCAT--AGGCAAAAAACTGAATGTTATGTTGTATTGG-TC-ACTAAAAAAAACTTCAAAA-GCACAAAGATTTTTCCA--Tacaa
gi|2 : gattgtcaacttttacttttgcagatgacagatgaattaattcttatttcacatagggaatcctgagaaaatatttcaacaccttgtgtgtcaactcgaatcttgttcaaatggttAGGTATCTTGGTCTTACAGACAGACAATGTG-----CTGTCAGGTGAAA-TA-TAGTTCATGATGCCTCTATTTTATAGGAAAAGTAAATTGCTTTAGAC---------TAATAGGACACATAATGGAAGCATTT-TAT--------------------------GATGTCAATTGTAGACAGTTGTGGGTGGATCTTAAGTGCCCTATACATTCAAGTGTATTTTTTGAT-AT----GCATGTTCATCGTTG-GTAATGTAGCAGGGCTTACCTTAATT-GAGCTCTTTCAAGATACAAATATACAAGT-ACA-CAAAATAAGA-GTTACAGTTAAGA-TTTGTTTT-------AGAT-TTGGACAAAGAGCAAGTGTTGACAACAAAAGTACAAATTCACTCATATAAATCCGCGTCCATTATGCATATGTGTTAATGAC-AGGGTCAAACAACTTAGATTAAATCATTTATTACAATATTGCTCATGAAAAT-CTCCTCAT------TATATGTGTCATAATTTTACTGCCTTGCCTAAATCAAAACTCATAACAACTGTAGTTTA------TAATACT----A-AGCATTAAGTTCATCATTAATTTTGATACTAACCTCGTATTAAGGTTA---AAGTGGA---TAGAGTTGGG--GA--TC------TTTTTT-GTAAAA-TGC-ACCAAAGAACTGGAATAATTT-ATTCAGAGAAATGT-ACCGTGGACAAGGAG-AAGAT-------------TCTGTTAAAAAC-ACATCTACGTTCTTTGAATGCCATTCTTTTTTGATGA-GCAAAA--CAAGA-GTTTACAAAATTATTCTTGTATAAAGACCATTCAAAAATATGTGTTTCATTTTACAATTGGCCTCCAATCCTTGTGTTA----TTTTTC-TGTCA--ATATAAACCAATGATTATTGGTATACA-AAGTCTT---GCTCCAAAGTTT--ATC-TCATTAGC--TTATTTA-------GATTTGAAT-----CACTGGGGT------TAATATTTACACT-------TGC----AAATAACAGCTTAC-C-AAAGGTACCCCATTGGA-AATAA------AGCC---GGGT---TATT--CCTTAGGATA-----CTGA-------A-C----ATATTT-AC------------TATA--GTGCTCC-ATAT-ACCAT-T--AGT--CT-A----T---AC--------T-----------------------------------A---AA-CAAAACTGTGATTGGTGAAT-GATGATATTTA-TTGATT--TT---TTGAAT-CGATATTGTTT-GGGTTTTT-TTTTAGATAAGTCT-AATATGGTGAGGTGTAGATGTGGAGTT--AAAC--A--ACC-G-AAA---CC-C-ATCGCTATCTTGCCAAAAT-C-TTAAGTT-GT---GAAA-ATG--TGAGTAT-T-G---AAAA-TT---T-TCTGTATCGA-TTTGTTTAGCTATATATTGCGTTA-TAATGTGTTG--GTCCTTTAAATTAAAATT
gi|20 : ttggTTG---TTAAATCCTTGT---AT---TTTTTCATGTCA--ATATAAACCA-TGATTATTGGTATACA-AAGTC-T--TGC--CAACGTTCTGATT-TCATTTG---TTATTTA-------GATA-AAGT-----CACTG---T------TAATATTTGCACC-------T-C----AA-TAACAGCT-AA-
gi|21 : caattgctaaaaatgatattgtatgtaatactAATTGAGAT--GTGATTTG-TGATATTTA-TT--A--ATT---TTGACGGTAATATTG-T---G----TT-GA--AG-T--GCCC-A-TAT-GGGA--TA-------GA---T--AGAA--TTTGCT-G-AAAATATA-T-AT-GATGTC-TGCCAAAAC-T-CTA---TTGT---GAAACATGGTTGAA-ATGT-GA-CAAAC-TTTTAT-TATGTAT-G
gi|22 : A--TGT-GATGTGA---T--AAAAGAT--GCTTG-AAA---TTAT-AT-G-TATC-TGCCAAAAACT-CTA---T-GT---G-AACGT-----AG-A--T-GA-CAACATTTTTATGTATGTAT-CA-TTT-TTTG-----------------TAATGTGTTGAGGTCT-TGAAA-TAAAt
gi|23 : aCTTATGAGTTACTAGTATTCGTAGGATA-----CTGACATCTTTAATTGCGATACTTTGCT-----------TATA--ATGCTCC-ATGTAATC--------T--TC-T----TTACATAAA-----T--------GT----------GATC---TT-GATAAC---AA-ACATACTGTGAT--ATGACT-taaaggattccatca
gi|24 : aCTTACGAT------CTCA-------A-CGA--ATTTTTTAG------------TATATTGTGATCCTATA-AACCATAT--AGT---C-T----T---AT--------T--------ACATAAAAAGGTGATT---TT-A-TTAA---AA-CATAGCTGATAT--GTGACT---TGATAT
gi|25 : attAGTAGATAACA-AACTTTCACTAC-ACA-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--T
gi|26 : ggttATCATGTAT-ACAATATTGCTCATGGAGATGCTTCTCAT------TATATGTGTTATAATTTTACT--CTTG--TAAATCAAA-CTCATGG----------TTA------TAATAC
gi|27 : AGAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAAATCTAAAAT-TCTACT-CATTTTAC-ATTG---TTAAATCCTTGT---A----TTTTTa
gi|28 : GT-GGCTTGA---T--AAAAA-T--GCT-G-AAA---TC-TCCT-G-TTTC-TGCCTAAAA-T-CTG---C-GTGTCGAAACATG--TTCA-AT-TCGATCAGA---TTTAT-T
gi|29 : TTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCA-CTAAA-TAAATTCCAATTC
gi|3 : tatttcgaaatatctaaAGTAAATAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGC-ATGTTGT-TTGG-TCCACCAAGAAAA-CTTCAAAA---ACAAA-ATTTGTCCA--TAATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGATAGACAATATG-----CTGTCAGGTGAAAATA-TAAT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AAAT---------TAA--------A-A-T-------TTT-TGTA------TA-----------------GACATCAAATGTAGACAGTTGC---T--CTCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCCTGTTCATCGT-G-GTA---T-GCAGGGCTTAC--GAA---GA---CTCTAAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTATTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTAAATGAC-AGGGTCAAACAACATAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAAATTTGCT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTTTG-TAC-AACCTCGTATTAAGGGTA---GAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-CAATGTCAAGGTCGA-AAAGAGAAAGATAAATTTTAAGAAATCTTT-AAAAAC-ACATCT----------------------TTTTCAAGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTAC-ATTG---TTAAATCCTCGT---A----TTTTTCATGTCA--ATATAAACCA-TGGTCATTGGTATAAACAGGTTTTTCTGC--CAAAGTTTTGATTATCATTTGATTTTATTTA-------GATA-GAAT-----CA-TG---T------TA-AATTTGCACT-------T-C----AA-TAACAGCT--A-T-AAGGATCTCCCATTGGATAATAAGCCTTGAGCTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----CTATTCT-T------------TAT---GTGTTCT-ATTTATCCATAT--AAT--TC-T----T---AT--------T--------GC----------GATC---TT-AATCAA---AA-CCAAACTGTGAT--GTAAGT-G-TGATACTTA-TT--TT-ATT---TTGATT-TAATATTG-TTGGG----TT-TTTTTT-T--GTCC-AATAT-GTGA--TGT-GATGTGA---T--AAAA--T--ACT-G-AAA---TC-C-AT-G-TATC-TGCCAAAAA-T-TTA---T-GT---GAAA-ATG--TGAG-AC-T-GC-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTTC-TAAAA-TAAAATTCAATTCaa
gi|30 : AGA-AAATGTCAAGGTGGA-AAGGAGAAAG--------------ATCTTT-AAAAAC-ACATCT----------------------TTTTGA
gi|31 : CAAACTTAT-CTC-TA-ACAGACCATTCTAGAAT-TCTGTT-CATT
gi|4 : gAGCA----GT-CATCAT-AATTAT--TAC-AAACTCGTATTAAGGATA---AAG---A---A--------GATGA--TC------TTTTTTTGTAAAATCGCCATCAAAGA-CTTGAATAATTTTAC---GA-AAATGTCAAGGTGGA-AAGGGGCAAGATAACTTTTAAGAGATCTGT-AAAAACCAC-TCT----------------------TTTTAATGAAGCAAAAG-CAAG-----------CTTAT----------AGACGATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---AGTTTTTTTTTATGTCA---TATTAATTT-TGATTATTACTATACA-AAGTCTT---GC--TTAAGTTCTGATG-TCATTTG---TTATTTACATGTAGAATA-GAATATAATCACTG---T------TATCATTTGCACTACTCACTT-C----AA-TAACAACT-AA-C-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----NCTT-------AAC----ATATTTTACT-----------TATA--GTGCTCC-ATATAACCGTAT--AA---TC-T----T---ATTACATAAAT--------GT----------GATC---TT-GACTAA---AA-CCAAACTGTGAT--GTGATT-T-TAATA------T--TT-ATT---TTGATT-GAATATTG-----------T-TTTAAG-T--GTCC-AAT------A--TAT-GATGTGC---T--AAAA--T--GCT-G-AAA---TC-T-CT-G-TATC-TGCCAAAGA-T-TTA---T-GT---AAAAC--G--TGAG-AT-T-GA-CAAA---CTTAT--------------------------------G-TA-TAATTTGTTGA-GTCC-TTAAA-TAAAACTTAATTC
gi|5 : TAAATAACG-AA-TATCATTGTTATC-TTTAGGCAAAA--CTGAATGT-ATTTTAT-TTGGTTCCAA-AACAAAG-TTTTAAAATGTTCAAAA---TTTCCAAGTTGTATGTA-ATGGT-----aa
gi|5 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttaCA-ATGT-CATATTGATTATACCTGCA-GTGCATGGT-ACGTA---T-TCAGGGCTATC--TAA---GA---CCTTAAAGC-AAAAAC-TATAAAT-ATGTCAAAACAA-G-AT---GGT-TTGA-TTTGATCT-------ACATcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctacaatgtcatattgattatacctgcagtgcatggtacgtattcagggctatctaagaccttaaagcaaaaactataaatatgtcaaaacaagatggtttgatttgatctacatacccatgtt
gi|6 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttataaataacgaatatcattgttatctttaggcaaaactgaatgtattttatttggttccaaaacaaagttttaaaatgttcaaaatttccaagttgtatgtaatggtcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctaAATAAATAACATAATTGTCACTTC-ATC-T--CGGAAAAA--CTGAATGT-ATTCTGT-TCTG-TCC-CTAGGTAAA-Cacccatgtt
gi|7 : gctccatctggattccgaagttaagttgtcttgttacgtttattgcattatatttagagaataacacatctcaaagaaacgttcacaggtatggttatgttagattacaaaaagcatcacaactattcattaaatattcgtgtaataaattagtatatggggattgaaagcggctgttaaaatcatacttaagtaggccaagtatctagtagtaagaatctaaccaagagaaatagaagtgtggctgaccccaaggcagtatttttaaagttccccattaattattttgagttatgtcaatgacagtcaacaacaagcgtagatgcattgcaaagttgatccttcatgcagacgaaatgcaaatcctttattcacacagaatctaaaggtctttcaacataggtcctagaaaatgcttctgatgctAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGACCATGGACAAAGAGCAAGTGTTGACAACCAA-GCAC---TTCAT------AAG-----GTCAAT-ATGT-TTTGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCAT-------------GCTTAT-----------------------TATGTGTCATAA-----------------AATCAAA-CTCATAG----------TTACATGTATAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AA-------------------------------------------A--TGCCATCAAAGA-CTGGAATAATTT-TC-CCGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAATAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAA------------GCAAACTTAT-CTT-TA-AAAGACAATTCTAAAAT-TCTGTT-CGTTTTACAATTG---TAAAATCGTTAT---A----TTTTTCATGTC---ATATTAACCA-TGATTAcgg
gi|7 : T-AATCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTATTT--TT-ATT---TTGATcataatcaaaaccaaactgtgacgtgtctgtgaatttatttttattttgat
gi|8 : aaaataaagtagtaagatttgttttagaccatggacaaagagcaagtgttgacaaccaagcacttcataaggtcaatatgttttgtgttagtgacagggtcaaacaacttagattaaatcatgcttattatgtgtcataaaatcaaactcatagttacatgtataatactagagcaagtcatcataattatgtacaacctcgtattaagggtaaaatgccatcaaagactggaataattttcccgaaaatgtcaaggtggaaaggggcaagataaattttaataaatctgtaaaaacacatctttttaatgaagcaaaagcaaacttatctttaaaagacaattctaaaattctgttcgttttacaattgtaaaatcgttatatttttcatgtcatattaaccatgattacaATATCAGTATATAAA--G-TGATTATTGGAATAAA-AAGTCTT---GC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAACT-AATN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----CTGA-------A-C----ATATTT-AC------------TATA--GTGCTCC-ATATAACCATAT--AATATTA-T----T---ATATAAA---T--------GC----------GAT--------ATCAA---AA-CCAAACTGTGGT--GTGACT-G-TGATATTTA-TT--TTTATT---TTAATT-TAATGTTT-TT-GT----TT-TTTTAG-T--GTAC-AATAT-GTGA--TGT-GAT----------AAAA--T--GCT-G-AAA---TA-T-AT-G-TATC-TGCCAAAAA---CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGCTGA-GTCC-TTAAA-TACAATTCAATTC
gi|9 : TCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---TAACTGTTATTATTTGTACT-------T-CGATCAA-TAACAACT-AA-C-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNN-----NNNN-------NNN----NNNNNNNNNNNNNNNNNNNNNTGTA--GTGCTTC-ATATAACTATAT--AAT---C-TAGTGC---ATAAA-----T--------GC----------GATC---TT-ACTCAA---AA-CCAAACTGTGAT--GTGACT-G-TGAAATTTA-TT--TT---------GAGT-TAATATAG----GT----TT-TTTTAG-C--GTCC---TAT----A--TGT-GATGTGA---C--ACAA--T--GCT-G-AAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-GAAAG-GTTCAT-TATGTAT-AA-TTTGTGTG--TAT-T------------ATGTGATGA-ATCC-TTAAA-TAAAATTCAATa
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 22222 1 22222 22222 11 11 22222222222222222222222222222222222222222222222222222222222222222 111111 11 111 1111 1111 111 111111 222 111 11111 1111111 111 111111 11111 111111 2222222222 111111 1111 111 111 5555555555555555555555555555555 11 5555555555555555555555 11 11 11111 111 11111111 111 222 111 1111111 11111 111111 1111111 33333333333333333333333333333333333 11111 22222222222222 222222222222 7777777777777777777777777777777777777777777777777 3333333333 11111111111 11
lowQualScore : 6 1 6 6 99 99 6 6 6 4 6 222 555 11 5 55555 0 55555 3 8 8 00000 11 8 11 66666666666666666666666666666666666666666666666666666666666666666 666666 11 444 6 6 3 4444 1111 000 444444 99 000 111 1 6 77 55555 5 5 888 5 5 6666666 5 000 666666 44444 5 5 1 6 2 6 2 5 999999 7 1 99 99 6 9999999999 999999 7777 111 6 6 77 6 111 4444444444444444444444444444444 3 55 6 6 6 5 0 5 4 1 1 333 6 6 1 9999999999999999999999 0 66 00 1 00000 5 1 5 5 7 000 1 88888888 222 1 5 6 1 444 99 5 555 8888888 5 44444 888 444444 3 4444444 4 9999 4 4 4 5 0 1 5 55555555555555555555555555555555555 11111 22222222222222 2 111111111111 44 3 2 1 4 4444444444444444444444444444444444444444444444444 3 555 2 444 2 33 0 2 2 5 33 5 555 3 1111111111 3 3 44 3 00000000000 444 00 33 2 777 2 2 2 5 2 2 2 444 2 444 5 33 2 2 2 2 77 2 2 6 33 2 44 2 8888 3 2 2 2
lowQualScore : . . . . .. .. . . . . . ... ... .. . ..... . ..... . . . ..... .. . .. ................................................................. ...... .. ... . . . .... .... ... ...... .. ... ... . . .. ..... . . ... . . ....... . ... ...... ..... . . . . . . . . ...... . . .. .. . .......... ...... .... ... . . .. . ... ............................... . .. . . . . . . . . . ... . . . ...................... . .. .. . ..... . . . . . ... . ........ ... . . . . ... .. . ... ....... . ..... ... ...... . ....... . .... . . . . . . . ................................... ..... .............. . ............ .. . . . . ................................................. . ... . ... . .. . . . . .. . ... . .......... . . .. . ........... ... .. .. . ... . . . . . . . ... . ... . .. . . . . .. . . . .. . .. . .... . . . .
lowQualScore : 7 0 7 7 22 22 7 7 7 2 7 666 000 00 0 00000 0 00000 2 0 0 00000 00 0 00 00000000000000000000000000000000000000000000000000000000000000000 000000 00 000 7 7 2 2222 7777 222 333333 22 888 777 0 7 77 77777 0 0 888 0 0 2222222 0 000 444444 33333 7 7 7 7 5 7 5 2 222222 5 5 22 22 7 2222222222 222222 0000 777 7 7 77 7 777 5555555555555555555555555555555 2 88 7 7 7 7 7 7 3 4 3 000 7 7 7 2222222222222222222222 8 55 33 4 00000 7 7 7 7 3 000 0 99999999 999 0 7 7 7 777 22 7 777 6666666 7 33333 888 444444 6 4444444 4 4444 4 4 4 0 9 0 0 88888888888888888888888888888888888 77777 99999999999999 0 999999999999 22 1 3 8 2 8888888888888888888888888888888888888888888888888 1 444 7 777 7 44 5 7 9 7 99 7 000 1 5555555555 1 1 22 1 22222222222 777 00 77 7 333 7 7 7 3 7 7 7 777 7 777 0 77 7 7 7 7 77 7 9 2 99 9 33 5 5555 4 9 9 9
consensus : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTTTCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT--TGC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAGCT-AA-C-AAAGGTCCCCCATTGGA-AATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT-GG----TT-TTTTAG-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
Reference ( family-1243 ) : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTTTCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT--TGC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAACT-AA-C-AAGGGNCCCCCATTGGA-AATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT-GG----TT-TTTTAG-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
gi|1 : TAA-ATGT---AGT-GAAAGTTTGTTTTCTTCTAAACATTTTGAACAAGATTCGAGT--TGACAACCAA-G
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcacAGAAGAAAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TTCACCAAGAAAA-CTTCAAAA-ATACAGAGAATTTTCCA--TAACATGTA-ATGGTACAGAGTAAAGTATCTTGGTCT-AAAGATACACAATGTGGGGTGCTGTCAGGTGAAAATAATAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AGT-------TTTGTATAGACATTTA-----------------GACATCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCA------------------------GGGCTTAC--TAATAAGA---CTCTTAAGA-ATAAAC-TACAAGTCACC-CAAAATAC-A-GT---A---------------T-------AGATCTTGGACAAAGACCAGGTGTTGACAACCAA-GCAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGAGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCATTACATGTATACGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACTATCCAGAGCA---AGT-CATTAT-AATTATG-TAC-AACCTCGTA-TAAGGGTAAAGAAG---A---T--------G--GA--TCTTTTTTTTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGG-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACGTCT----------------------TTTTAATGAAGCAAAAAGGAAGAAGTTTACA-------------A-AGAGAAAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---A----TTCTTCATGTC---ATATTAACCA-TGATTATTGCTATACA-AAG-CCT--TGC--CAAAGTTATTATC-TCATTTG---TTATTCA-------GATA-GAAT-----CACTC---T------TATTATTTGCACT-------T-A----AA-AAACAACT-AA-CNNNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----CTG--------AAC----ATATTTTAC------------TATA--GTGCTCA-ATAT-----T-T--AA---TCT----T---ATTACATAAAT--------GC----------GA-TCCTTTTAG-TTAGTTTAG-TCAATATGTGAT--GTGAggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaatatttaatcttattacataaatgcgatccttttagttagtttagtcaatatgtgatgtgataaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttATATTTAATC--TT-ATTACATAAATG-CGATCCTT-TT-AG----TTAGTTTAG-T-----CAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAC-TTTTAT-TATGTAT-AA-TTTGTTTG--TAT-TA-TGGG-TA-TTATGTGTTGA-GTTC-CAATA-TAAAATTCAATTCtaaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|10 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttagaagaaaacaaactttcactacatttaggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaTTGCACA-------T-C----AA-TAATAGCT-AA-C-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNNN----CTGA-------A-C----ATATTTTAC------------AATA--GTGCTCC-ATATAA--AT-T----T--TAT----T---ATGTAAA---T--------GC----------GA-TC---TTCA-TCAA---AAACCAAACTGTGAT--ATGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATAT-G-TT-GG----TT-TTTTAG-T--GTCCAT-AAT-GTGA--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TC-C-AT-G-TATC-TGCCAAAAA-T-T-----T-GT---GAA--ATG--TGAG-AT-T-GA-CAACA-TTTTAT-TATGTAT-GATTTTGTTTG--TAT-TA-TGCG-AA-T-ATATGTTGA-GTCC-TTAAA-TAAAATCCAATTC
gi|11 : ---T------TATTATTTGCACT-------T-C----AA-TAACAACT-AA-C-AAAGGACCCCCATTGGA-AA---------CTTGA-------TGAGT---TAT---CCTTAGGATA-----CTGA-------A-C----ATATTTTAC------------TAAA--GTGCTCC-ATAT---CTTATTAAAT--A----------AA--------T--------GC----------GA-TC---GTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT--------T-TTTTAG-T--GTCCAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TT-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-CTTTAT-TATGTAC-CA-TTTGTTTG--TAT-TA-TGCG----TAATGTGTTGA-ATCC-TTAAA-TAAAATTCAATTCaa
gi|12 : AATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGATATAGACACATAAG-------A-AAC-------ATT-T----------A-----------------GATGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-ACAGGGCTTAC--CAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCATT-ATGC-TATGTGTTAa
gi|13 : ATAAGGACCCCTTTAGGCTTTATGGGT---TATT--CCTT-GGATA-----CCTG-------AAC----ATAC------------------ACA--GTGCTCC-ATATACCCTTAT--TA----CA----T---AAA-------T--------GC----------AAATC---TTAAATCAA---AA-CCAAACTGTGA--------------ATATTTA--------ATT---TTCATT-TAATATTG-TT--------C-TTTTAG-A--GTCCAAATAT-TTGA------AATGTGA---TAAAAAAT--GCT-GAAAA--TC-T-AT-G--ATC-TGCCCAAAA-TACTA---T-GT---GAAACATG--TGAG-AT-T-GA-CA-----TTTAT-TATGTAT-AATTTTGTTTG--CAT-T------------ATGTGTTGA-TTCC-TGAAA-TAAAATTCAATT
gi|14 : acaacaaat----CCTTAGGATATCATACTGA-------A-C----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT---CT----T---AT--------TATAAAAATGC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TG--TG-ATT---TTGATT-TAATATTG-T--------TT-ATTTAG-T--GTCCAA-T------A--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TT-C-AT-G-TATC-TGCCACAAA-A-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA-CATAA-TTTTAA-TATGTAT-GA-TATGTTTG--TAT-TA-TGCG-TATTTATGTGTTGA-GTCC-TTTAA-TAAAATTCAATTCa
gi|15 : tA-TAGT-CATG-----TCTAGT--ATATGAAAAGTAAAT-GTT--AGAT---------TAA--------A-A-T-------TTT-TGTA------TAAACATAAGAAACATCTAGACGTCAAATGTAGACAGTTGC---T--ATTT--AGTGCCCT---CATCCA-GTTT-TATTT------------------CATCGT-G-GTA---T-GCAGGGCTTAT--TAA---GG---CTCTCAAGA-ACAAA------------------ATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAATTGTTGACAGCCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTACTGAC-AGGGTCAAACAAC
gi|16 : tgtgcaggtcGTATTGGCAAGTAG-ATAT---ATTAT------TAG------TAAAT-CGGT-T-TG-GTCAGTCACCAGAGCCAAACAACTTAGATTAAATCATGTTT-ATAATACTGCTCATGGAATTGTT-----T------TACAT---TCATA------CT--ATTG--TAA-TAAAA-ATCATTG----------TTG------TAATACT----TGTACA---AGT-CATCAT-AATTATA-TAC-AACCTCGCATTGAAGGTA---AAG---AAGAT--------G--GAGATT------TCTTTTTGTAAA--TGACATCAAAGA-TTGAAATAATTT-AC-CGGA-TAATGTAAAGGTGG--AAGGGGCAAGATAAA
gi|17 : AC------------TATA--GTGCTCC-ATATAACCATAT--AGT--C------T---AT----------------------------------------A-CTAA---A---CAAACTGTGAT--GTGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-GTATATTG-TT-GGGT--TT-TTTTAG-T--GTCTAA-TAT-GTGA--TGT-GATGTGA---TTAAA--C--ACC-GAAA---CC-C-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA--AAAA-TTTTAT-TCTGTAG-GA-TTTGTTTA--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATT
gi|18 : TAA-TCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTA-TT--TTTATT---TTGAT------ATT----------------TTAA-T--GTCCAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-TT---GAAACATG--TGAG-AT-T-GA-CAAAT-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TG---------TGTG--GA-GTCC-TTAAA-TAAGATTCAAT
gi|19 : tttcatgtcatattaaccatgattacaAGTAGATAACA-AACTT-CACTAC-AGCAT--AGGCAAAAAACTGAATGTTATGTTGTATTGG-TC-ACTAAAAAAAACTTCAAAA-GCACAAAGATTTTTCCA--Tacaa
gi|2 : gattgtcaacttttacttttgcagatgacagatgaattaattcttatttcacatagggaatcctgagaaaatatttcaacaccttgtgtgtcaactcgaatcttgttcaaatggttAGGTATCTTGGTCTTACAGACAGACAATGTG-----CTGTCAGGTGAAA-TA-TAGTTCATGATGCCTCTATTTTATAGGAAAAGTAAATTGCTTTAGAC---------TAATAGGACACATAATGGAAGCATTT-TAT--------------------------GATGTCAATTGTAGACAGTTGTGGGTGGATCTTAAGTGCCCTATACATTCAAGTGTATTTTTTGAT-AT----GCATGTTCATCGTTG-GTAATGTAGCAGGGCTTACCTTAATT-GAGCTCTTTCAAGATACAAATATACAAGT-ACA-CAAAATAAGA-GTTACAGTTAAGA-TTTGTTTT-------AGAT-TTGGACAAAGAGCAAGTGTTGACAACAAAAGTACAAATTCACTCATATAAATCCGCGTCCATTATGCATATGTGTTAATGAC-AGGGTCAAACAACTTAGATTAAATCATTTATTACAATATTGCTCATGAAAAT-CTCCTCAT------TATATGTGTCATAATTTTACTGCCTTGCCTAAATCAAAACTCATAACAACTGTAGTTTA------TAATACT----A-AGCATTAAGTTCATCATTAATTTTGATACTAACCTCGTATTAAGGTTA---AAGTGGA---TAGAGTTGGG--GA--TC------TTTTTT-GTAAAA-TGC-ACCAAAGAACTGGAATAATTT-ATTCAGAGAAATGT-ACCGTGGACAAGGAG-AAGAT-------------TCTGTTAAAAAC-ACATCTACGTTCTTTGAATGCCATTCTTTTTTGATGA-GCAAAA--CAAGA-GTTTACAAAATTATTCTTGTATAAAGACCATTCAAAAATATGTGTTTCATTTTACAATTGGCCTCCAATCCTTGTGTTA----TTTTTC-TGTCA--ATATAAACCAATGATTATTGGTATACA-AAGTCTT---GCTCCAAAGTTT--ATC-TCATTAGC--TTATTTA-------GATTTGAAT-----CACTGGGGT------TAATATTTACACT-------TGC----AAATAACAGCTTAC-C-AAAGGTACCCCATTGGA-AATAA----------AG--CC---GGGT---TATT--CCTTAGGATA-----CTGA-------A-C----ATATTT-AC------------TATA--GTGCTCC-ATAT-ACCAT-T--AGT--CTA----T---AC--------T------------------------------------A---AA-CAAAACTGTGATTGGTGAAT-GATGATATTTA-TTGATT--TT---TTGAAT-CGATATTGTTT-GGGTTTTT-TTTTAGATAAGTCTAA-TATGGTGAGGTGTAGATGTGGAGTTAAAC--A--ACC-GAAA---CC-C-ATCGCTATCTTGCCAAAAT-C-TTAAGTT-GT---GAAA-ATG--TGAGTAT-T-G---AAAA-TT---T-TCTGTATCGA-TTTGTTTAGCTATATATTGCGTTA-TAATGTGTTG--GTCCTTTAAATTAAAATT
gi|20 : ttggTTG---TTAAATCCTTGT---AT---TTTTTCATGTCA--ATATAAACCA-TGATTATTGGTATACA-AAGTC-T--TGC--CAACGTTCTGATT-TCATTTG---TTATTTA-------GATA-AAGT-----CACTG---T------TAATATTTGCACC-------T-C----AA-TAACAGCT-AA-
gi|21 : caattgctaaaaatgatattgtatgtaatactAATTGAGAT--GTGATTTG-TGATATTTA-TT--A--ATT---TTGACGGTAATATTG-T---G----TT-GA--AG-T--GCCCA--TAT-GGGA--TA-------GA---TAGAA--TTTGCT-GAAAATATA-T-AT-GATGTC-TGCCAAAAC-T-CTA---TTGT---GAAACATGGTTGAA-ATGT-GA-CAAAC-TTTTAT-TATGTAT-G
gi|22 : A--TGT-GATGTGA---TAAAAGAT--GCTTGAAA---TTAT-AT-G-TATC-TGCCAAAAACT-CTA---T-GT---G-AACGT-----AG-A--T-GA-CAACATTTTTATGTATGTAT-CA-TTT-TTTG-----------------TAATGTGTTGAGGTCT-TGAAA-TAAAt
gi|23 : a--CTTATGAGTTACTAGTATTCGTAGGATA-----CTGACATCTTTAATTGCGATACTTTGCT-----------TATA--ATGCTCC-ATGTAATC--------T--TCT----TTACATAAA-----T--------GT----------GA-TC---TTGA-TAAC---AA-ACATACTGTGAT--ATGACT-taaaggattccatca
gi|24 : aCTTACGAT------CTCA-------A-CGA--ATTTTTTAG------------TATATTGTGATCCTATA-AACCATAT--AGT---CT----T---AT--------T--------ACATAAAAAGGTGA-TT---TTA--TTAA---AA-CATAGCTGATAT--GTGACT---TGATAT
gi|25 : attAGTAGATAACA-AACTTTCACTAC-ACA-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--T
gi|26 : ggttATCATGTAT-ACAATATTGCTCATGGAGATGCTTCTCAT------TATATGTGTTATAATTTTACT--CTTG--TAAATCAAA-CTCATGG----------TTA------TAATAC
gi|27 : AGAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAAATCTAAAAT-TCTACT-CATTTTAC-ATTG---TTAAATCCTTGT---A----TTTTTa
gi|28 : GT-GGCTTGA---TAAAAA-T--GCT-GAAA---TC-TCCT-G-TTTC-TGCCTAAAA-T-CTG---C-GTGTCGAAACATG--TTCA-AT-TCGATCAGA---TTTAT-T
gi|29 : TTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCA-CTAAA-TAAATTCCAATTC
gi|3 : tatttcgaaatatctaaAGTAAATAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGC-ATGTTGT-TTGG-TCCACCAAGAAAA-CTTCAAAA---ACAAA-ATTTGTCCA--TAATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGATAGACAATATG-----CTGTCAGGTGAAAATA-TAAT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AAAT---------TAA--------A-A-T-------TTT-TGTA------TA-----------------GACATCAAATGTAGACAGTTGC---T--CTCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCCTGTTCATCGT-G-GTA---T-GCAGGGCTTAC--GAA---GA---CTCTAAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTATTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTAAATGAC-AGGGTCAAACAACATAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAAATTTGCT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTTTG-TAC-AACCTCGTATTAAGGGTA---GAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-CAATGTCAAGGTCGA-AAAGAGAAAGATAAATTTTAAGAAATCTTT-AAAAAC-ACATCT----------------------TTTTCAAGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTAC-ATTG---TTAAATCCTCGT---A----TTTTTCATGTCA--ATATAAACCA-TGGTCATTGGTATAAACAGGTTTTTCTGC--CAAAGTTTTGATTATCATTTGATTTTATTTA-------GATA-GAAT-----CA-TG---T------TA-AATTTGCACT-------T-C----AA-TAACAGCT--A-T-AAGGATCTCCCATTGGATAATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----CTATTCT-T------------TAT---GTGTTCT-ATTTATCCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTAAGT-G-TGATACTTA-TT--TT-ATT---TTGATT-TAATATTG-TTGGG----TT-TTTTTT-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TC-C-AT-G-TATC-TGCCAAAAA-T-TTA---T-GT---GAAA-ATG--TGAG-AC-T-GC-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTTC-TAAAA-TAAAATTCAATTCaa
gi|30 : AGA-AAATGTCAAGGTGGA-AAGGAGAAAG--------------ATCTTT-AAAAAC-ACATCT----------------------TTTTGA
gi|31 : CAAACTTAT-CTC-TA-ACAGACCATTCTAGAAT-TCTGTT-CATT
gi|4 : gAGCA----GT-CATCAT-AATTAT--TAC-AAACTCGTATTAAGGATA---AAG---A---A--------GATGA--TC------TTTTTTTGTAAAATCGCCATCAAAGA-CTTGAATAATTTTAC---GA-AAATGTCAAGGTGGA-AAGGGGCAAGATAACTTTTAAGAGATCTGT-AAAAACCAC-TCT----------------------TTTTAATGAAGCAAAAG-CAAG-----------CTTAT----------AGACGATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---AGTTTTTTTTTATGTCA---TATTAATTT-TGATTATTACTATACA-AAGTCTT---GC--TTAAGTTCTGATG-TCATTTG---TTATTTACATGTAGAATA-GAATATAATCACTG---T------TATCATTTGCACTACTCACTT-C----AA-TAACAACT-AA-C-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----NCTT-------AAC----ATATTTTACT-----------TATA--GTGCTCC-ATATAACCGTAT--AA---TCT----T---ATTACATAAAT--------GT----------GA-TC---TTGA-CTAA---AA-CCAAACTGTGAT--GTGATT-T-TAATA------T--TT-ATT---TTGATT-GAATATTG-----------T-TTTAAG-T--GTCCAA-T------A--TAT-GATGTGC---TAAAA--T--GCT-GAAA---TC-T-CT-G-TATC-TGCCAAAGA-T-TTA---T-GT---AAAAC--G--TGAG-AT-T-GA-CAAA---CTTAT--------------------------------G-TA-TAATTTGTTGA-GTCC-TTAAA-TAAAACTTAATTC
gi|5 : TAAATAACG-AA-TATCATTGTTATC-TTTAGGCAAAA--CTGAATGT-ATTTTAT-TTGGTTCCAA-AACAAAG-TTTTAAAATGTTCAAAA---TTTCCAAGTTGTATGTA-ATGGT-----aa
gi|5 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttaCA-ATGT-CATATTGATTATACCTGCA-GTGCATGGT-ACGTA---T-TCAGGGCTATC--TAA---GA---CCTTAAAGC-AAAAAC-TATAAAT-ATGTCAAAACAA-G-AT---GGT-TTGA-TTTGATCT-------ACATcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctacaatgtcatattgattatacctgcagtgcatggtacgtattcagggctatctaagaccttaaagcaaaaactataaatatgtcaaaacaagatggtttgatttgatctacatacccatgtt
gi|6 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttataaataacgaatatcattgttatctttaggcaaaactgaatgtattttatttggttccaaaacaaagttttaaaatgttcaaaatttccaagttgtatgtaatggtcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctaAATAAATAACATAATTGTCACTTC-ATC-T--CGGAAAAA--CTGAATGT-ATTCTGT-TCTG-TCC-CTAGGTAAA-Cacccatgtt
gi|7 : gctccatctggattccgaagttaagttgtcttgttacgtttattgcattatatttagagaataacacatctcaaagaaacgttcacaggtatggttatgttagattacaaaaagcatcacaactattcattaaatattcgtgtaataaattagtatatggggattgaaagcggctgttaaaatcatacttaagtaggccaagtatctagtagtaagaatctaaccaagagaaatagaagtgtggctgaccccaaggcagtatttttaaagttccccattaattattttgagttatgtcaatgacagtcaacaacaagcgtagatgcattgcaaagttgatccttcatgcagacgaaatgcaaatcctttattcacacagaatctaaaggtctttcaacataggtcctagaaaatgcttctgatgctAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGACCATGGACAAAGAGCAAGTGTTGACAACCAA-GCAC---TTCAT------AAG-----GTCAAT-ATGT-TTTGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCAT-------------GCTTAT-----------------------TATGTGTCATAA-----------------AATCAAA-CTCATAG----------TTACATGTATAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AA-------------------------------------------A--TGCCATCAAAGA-CTGGAATAATTT-TC-CCGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAATAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAA------------GCAAACTTAT-CTT-TA-AAAGACAATTCTAAAAT-TCTGTT-CGTTTTACAATTG---TAAAATCGTTAT---A----TTTTTCATGTC---ATATTAACCA-TGATTAcgg
gi|7 : TAA-TCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTATTT--TT-ATT---TTGATcataatcaaaaccaaactgtgacgtgtctgtgaatttatttttattttgat
gi|8 : aaaataaagtagtaagatttgttttagaccatggacaaagagcaagtgttgacaaccaagcacttcataaggtcaatatgttttgtgttagtgacagggtcaaacaacttagattaaatcatgcttattatgtgtcataaaatcaaactcatagttacatgtataatactagagcaagtcatcataattatgtacaacctcgtattaagggtaaaatgccatcaaagactggaataattttcccgaaaatgtcaaggtggaaaggggcaagataaattttaataaatctgtaaaaacacatctttttaatgaagcaaaagcaaacttatctttaaaagacaattctaaaattctgttcgttttacaattgtaaaatcgttatatttttcatgtcatattaaccatgattacaATATCAGTATATAAA--G-TGATTATTGGAATAAA-AAGTCTT---GC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAACT-AATN-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----CTGA-------A-C----ATATTT-AC------------TATA--GTGCTCC-ATATAACCATAT--AATATTAT----T---ATATAAA---T--------GC----------GA-T-------A-TCAA---AA-CCAAACTGTGGT--GTGACT-G-TGATATTTA-TT--TTTATT---TTAATT-TAATGTTT-TT-GT----TT-TTTTAG-T--GTACAA-TAT-GTGA--TGT-GAT--------AAAA--T--GCT-GAAA---TA-T-AT-G-TATC-TGCCAAAAA---CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGCTGA-GTCC-TTAAA-TACAATTCAATTC
gi|9 : TCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---TAACTGTTATTATTTGTACT-------T-CGATCAA-TAACAACT-AA-C-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----NNNN-------NNN----NNNNNNNNNNNNNNNNNNNNNTGTA--GTGCTTC-ATATAACTATAT--AAT---CTAGTGC---ATAAA-----T--------GC----------GA-TC---TTAC-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGAAATTTA-TT--TT---------GAGT-TAATATAG----GT----TT-TTTTAG-C--GTCC---TAT----A--TGT-GATGTGA---CACAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-GAAAG-GTTCAT-TATGTAT-AA-TTTGTGTG--TAT-T------------ATGTGATGA-ATCC-TTAAA-TAAAATTCAATa
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 22222 1 22222 22222 11 11 22222222222222222222222222222222222222222222222222222222222222222 111111 11 111 1111 1111 111 111111 222 111 11111 1111111 111 111111 11111 111111 2222222222 111111 1111 111 111 5555555555555555555555555555555 11 5555555555555555555555 11 11 11111 111 11111111 111 222 111 1111111 11111 111111 1111111 33333333333333333333333333333333333 11111 222222222222222 222222222222 7777777777777777777777777777777777777777777777777 3333333333 11111111111 11
lowQualScore : 6 1 6 6 99 99 6 6 6 4 6 222 555 11 5 55555 0 55555 3 8 8 00000 11 8 11 66666666666666666666666666666666666666666666666666666666666666666 666666 11 444 6 6 3 4444 1111 000 444444 99 000 111 1 6 77 55555 5 5 888 5 5 6666666 5 000 666666 44444 5 5 1 6 2 6 2 5 999999 7 1 99 99 6 9999999999 999999 7777 111 6 6 77 6 111 4444444444444444444444444444444 3 55 6 6 6 5 0 5 4 1 1 333 6 6 1 9999999999999999999999 0 66 00 1 00000 5 1 5 5 7 000 1 88888888 222 1 5 6 1 444 99 5 555 8888888 5 44444 888 444444 3 4444444 4 9999 4 4 4 5 0 5 55555555555555555555555555555555555 11111 222222222222222 111111111111 44 3 2 1 4 4444444444444444444444444444444444444444444444444 3 555 2 444 2 33 0 2 2 5 33 5 555 3 1111111111 3 3 44 3 00000000000 444 00 33 2 777 2 2 2 5 2 2 2 444 2 444 5 33 2 2 2 2 77 2 2 6 33 2 44 2 8888 3 2 2 2
lowQualScore : . . . . .. .. . . . . . ... ... .. . ..... . ..... . . . ..... .. . .. ................................................................. ...... .. ... . . . .... .... ... ...... .. ... ... . . .. ..... . . ... . . ....... . ... ...... ..... . . . . . . . . ...... . . .. .. . .......... ...... .... ... . . .. . ... ............................... . .. . . . . . . . . . ... . . . ...................... . .. .. . ..... . . . . . ... . ........ ... . . . . ... .. . ... ....... . ..... ... ...... . ....... . .... . . . . . . ................................... ..... ............... ............ .. . . . . ................................................. . ... . ... . .. . . . . .. . ... . .......... . . .. . ........... ... .. .. . ... . . . . . . . ... . ... . .. . . . . .. . . . .. . .. . .... . . . .
lowQualScore : 7 0 7 7 22 22 7 7 7 2 7 666 000 00 0 00000 0 00000 2 0 0 00000 00 0 00 00000000000000000000000000000000000000000000000000000000000000000 000000 00 000 7 7 2 2222 7777 222 333333 22 888 777 0 7 77 77777 0 0 888 0 0 2222222 0 000 444444 33333 7 7 7 7 5 7 5 2 222222 5 5 22 22 7 2222222222 222222 0000 777 7 7 77 7 777 5555555555555555555555555555555 2 88 7 7 7 7 7 7 3 4 3 000 7 7 7 2222222222222222222222 8 55 33 4 00000 7 7 7 7 3 000 0 99999999 999 0 7 7 7 777 22 7 777 6666666 7 33333 888 444444 6 4444444 4 4444 4 4 4 0 5 0 88888888888888888888888888888888888 77777 222222222222222 999999999999 22 1 3 8 2 8888888888888888888888888888888888888888888888888 1 444 7 777 7 44 5 7 9 7 99 7 000 1 5555555555 1 1 22 1 22222222222 777 00 77 7 333 7 7 7 3 7 7 7 777 7 777 0 77 7 7 7 7 77 7 9 2 99 9 33 5 5555 4 9 9 9
consensus : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTTTCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT--TGC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAGCT-AA-C-AAAGGTCCCCCATTGGA-AATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT-GG----TT-TTTTAG-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
Reference ( family-1243 ) : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTTTCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT--TGC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAGCT-AA-C-AAAGGTCCCCCATTGGA-AATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT-GG----TT-TTTTAG-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
gi|1 : TAA-ATGT---AGT-GAAAGTTTGTTTTCTTCTAAACATTTTGAACAAGATTCGAGT--TGACAACCAA-G
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcacAGAAGAAAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TTCACCAAGAAAA-CTTCAAAA-ATACAGAGAATTTTCCA--TAACATGTA-ATGGTACAGAGTAAAGTATCTTGGTCT-AAAGATACACAATGTGGGGTGCTGTCAGGTGAAAATAATAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AGT-------TTTGTATAGACATTTA-----------------GACATCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCA------------------------GGGCTTAC--TAATAAGA---CTCTTAAGA-ATAAAC-TACAAGTCACC-CAAAATAC-A-GT---A---------------T-------AGATCTTGGACAAAGACCAGGTGTTGACAACCAA-GCAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGAGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCATTACATGTATACGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACTATCCAGAGCA---AGT-CATTAT-AATTATG-TAC-AACCTCGTA-TAAGGGTAAAGAAG---A---T--------G--GA--TCTTTTTTTTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGG-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACGTCT----------------------TTTTAATGAAGCAAAAAGGAAGAAGTTTACA-------------A-AGAGAAAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---A----TTCTTCATGTC---ATATTAACCA-TGATTATTGCTATACA-AAG-CCT--TGC--CAAAGTTATTATC-TCATTTG---TTATTCA-------GATA-GAAT-----CACTC---T------TATTATTTGCACT-------T-A----AA-AAACAACT-AA-CNNNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----CTG--------AAC----ATATTTTAC------------TATA--GTGCTCA-ATAT-----T-T--AA---TCT----T---ATTACATAAAT--------GC----------GA-TCCTTTTAG-TTAGTTTAG-TCAATATGTGAT--GTGAggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaatatttaatcttattacataaatgcgatccttttagttagtttagtcaatatgtgatgtgataaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttATATTTAATC--TT-ATTACATAAATG-CGATCCTT-TT-AG----TTAGTTTAG-T-----CAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAC-TTTTAT-TATGTAT-AA-TTTGTTTG--TAT-TA-TGGG-TA-TTATGTGTTGA-GTTC-CAATA-TAAAATTCAATTCtaaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|10 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttagaagaaaacaaactttcactacatttaggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaTTGCACA-------T-C----AA-TAATAGCT-AA-C-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNNN----CTGA-------A-C----ATATTTTAC------------AATA--GTGCTCC-ATATAA--AT-T----T--TAT----T---ATGTAAA---T--------GC----------GA-TC---TTCA-TCAA---AAACCAAACTGTGAT--ATGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATAT-G-TT-GG----TT-TTTTAG-T--GTCCAT-AAT-GTGA--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TC-C-AT-G-TATC-TGCCAAAAA-T-T-----T-GT---GAA--ATG--TGAG-AT-T-GA-CAACA-TTTTAT-TATGTAT-GATTTTGTTTG--TAT-TA-TGCG-AA-T-ATATGTTGA-GTCC-TTAAA-TAAAATCCAATTC
gi|11 : ---T------TATTATTTGCACT-------T-C----AA-TAACAACT-AA-C-AAAGGACCCCCATTGGA-AA---------CTTGA-------TGAGT---TAT---CCTTAGGATA-----CTGA-------A-C----ATATTTTAC------------TAAA--GTGCTCC-ATAT---CTTATTAAAT--A----------AA--------T--------GC----------GA-TC---GTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT--------T-TTTTAG-T--GTCCAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TT-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-CTTTAT-TATGTAC-CA-TTTGTTTG--TAT-TA-TGCG----TAATGTGTTGA-ATCC-TTAAA-TAAAATTCAATTCaa
gi|12 : AATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGATATAGACACATAAG-------A-AAC-------ATT-T----------A-----------------GATGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-ACAGGGCTTAC--CAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCATT-ATGC-TATGTGTTAa
gi|13 : ATAAGGACCCCTTTAGGCTTTATGGGT---TATT--CCTT-GGATA-----CCTG-------AAC----ATAC------------------ACA--GTGCTCC-ATATACCCTTAT--TA----CA----T---AAA-------T--------GC----------AAATC---TTAAATCAA---AA-CCAAACTGTGA--------------ATATTTA--------ATT---TTCATT-TAATATTG-TT--------C-TTTTAG-A--GTCCAAATAT-TTGA------AATGTGA---TAAAAAAT--GCT-GAAAA--TC-T-AT-G--ATC-TGCCCAAAA-TACTA---T-GT---GAAACATG--TGAG-AT-T-GA-CA-----TTTAT-TATGTAT-AATTTTGTTTG--CAT-T------------ATGTGTTGA-TTCC-TGAAA-TAAAATTCAATT
gi|14 : acaacaaat----CCTTAGGATATCATACTGA-------A-C----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT---CT----T---AT--------TATAAAAATGC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TG--TG-ATT---TTGATT-TAATATTG-T--------TT-ATTTAG-T--GTCCAA-T------A--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TT-C-AT-G-TATC-TGCCACAAA-A-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA-CATAA-TTTTAA-TATGTAT-GA-TATGTTTG--TAT-TA-TGCG-TATTTATGTGTTGA-GTCC-TTTAA-TAAAATTCAATTCa
gi|15 : tA-TAGT-CATG-----TCTAGT--ATATGAAAAGTAAAT-GTT--AGAT---------TAA--------A-A-T-------TTT-TGTA------TAAACATAAGAAACATCTAGACGTCAAATGTAGACAGTTGC---T--ATTT--AGTGCCCT---CATCCA-GTTT-TATTT------------------CATCGT-G-GTA---T-GCAGGGCTTAT--TAA---GG---CTCTCAAGA-ACAAA------------------ATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAATTGTTGACAGCCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTACTGAC-AGGGTCAAACAAC
gi|16 : tgtgcaggtcGTATTGGCAAGTAG-ATAT---ATTAT------TAG------TAAAT-CGGT-T-TG-GTCAGTCACCAGAGCCAAACAACTTAGATTAAATCATGTTT-ATAATACTGCTCATGGAATTGTT-----T------TACAT---TCATA------CT--ATTG--TAA-TAAAA-ATCATTG----------TTG------TAATACT----TGTACA---AGT-CATCAT-AATTATA-TAC-AACCTCGCATTGAAGGTA---AAG---AAGAT--------G--GAGATT------TCTTTTTGTAAA--TGACATCAAAGA-TTGAAATAATTT-AC-CGGA-TAATGTAAAGGTGG--AAGGGGCAAGATAAA
gi|17 : AC------------TATA--GTGCTCC-ATATAACCATAT--AGT--C------T---AT----------------------------------------A-CTAA---A---CAAACTGTGAT--GTGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-GTATATTG-TT-GGGT--TT-TTTTAG-T--GTCTAA-TAT-GTGA--TGT-GATGTGA---TTAAA--C--ACC-GAAA---CC-C-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA--AAAA-TTTTAT-TCTGTAG-GA-TTTGTTTA--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATT
gi|18 : TAA-TCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTA-TT--TTTATT---TTGAT------ATT----------------TTAA-T--GTCCAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-TT---GAAACATG--TGAG-AT-T-GA-CAAAT-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TG---------TGTG--GA-GTCC-TTAAA-TAAGATTCAAT
gi|19 : tttcatgtcatattaaccatgattacaAGTAGATAACA-AACTT-CACTAC-AGCAT--AGGCAAAAAACTGAATGTTATGTTGTATTGG-TC-ACTAAAAAAAACTTCAAAA-GCACAAAGATTTTTCCA--Tacaa
gi|2 : gattgtcaacttttacttttgcagatgacagatgaattaattcttatttcacatagggaatcctgagaaaatatttcaacaccttgtgtgtcaactcgaatcttgttcaaatggttAGGTATCTTGGTCTTACAGACAGACAATGTG-----CTGTCAGGTGAAA-TA-TAGTTCATGATGCCTCTATTTTATAGGAAAAGTAAATTGCTTTAGAC---------TAATAGGACACATAATGGAAGCATTT-TAT--------------------------GATGTCAATTGTAGACAGTTGTGGGTGGATCTTAAGTGCCCTATACATTCAAGTGTATTTTTTGAT-AT----GCATGTTCATCGTTG-GTAATGTAGCAGGGCTTACCTTAATT-GAGCTCTTTCAAGATACAAATATACAAGT-ACA-CAAAATAAGA-GTTACAGTTAAGA-TTTGTTTT-------AGAT-TTGGACAAAGAGCAAGTGTTGACAACAAAAGTACAAATTCACTCATATAAATCCGCGTCCATTATGCATATGTGTTAATGAC-AGGGTCAAACAACTTAGATTAAATCATTTATTACAATATTGCTCATGAAAAT-CTCCTCAT------TATATGTGTCATAATTTTACTGCCTTGCCTAAATCAAAACTCATAACAACTGTAGTTTA------TAATACT----A-AGCATTAAGTTCATCATTAATTTTGATACTAACCTCGTATTAAGGTTA---AAGTGGA---TAGAGTTGGG--GA--TC------TTTTTT-GTAAAA-TGC-ACCAAAGAACTGGAATAATTT-ATTCAGAGAAATGT-ACCGTGGACAAGGAG-AAGAT-------------TCTGTTAAAAAC-ACATCTACGTTCTTTGAATGCCATTCTTTTTTGATGA-GCAAAA--CAAGA-GTTTACAAAATTATTCTTGTATAAAGACCATTCAAAAATATGTGTTTCATTTTACAATTGGCCTCCAATCCTTGTGTTA----TTTTTC-TGTCA--ATATAAACCAATGATTATTGGTATACA-AAGTCTT---GCTCCAAAGTTT--ATC-TCATTAGC--TTATTTA-------GATTTGAAT-----CACTGGGGT------TAATATTTACACT-------TGC----AAATAACAGCTTAC-C-AAAGGTACCCCATTGGA-AATAA----------AG--C---CGGGT---TATT--CCTTAGGATA-----CTG--------AAC----ATA-TTTAC------------TATA--GTGCTCC-ATAT-ACCAT-T--AGT--CTA----T---AC--------T------------------------------------A---AA-CAAAACTGTGATTGGTGAAT-GATGATATTTA-TTGATT--TT---TTGAAT-CGATATTGTTT-GGGTTTTT-TTTTAGATAAGTCTAA-TATGGTGAGGTGTAGATGTGGAGTTAAAC--A--ACC-GAAA---CC-C-ATCGCTATCTTGCCAAAAT-C-TTAAGTT-GT---GAAA-ATG--TGAGTAT-T-G---AAAA-TT---T-TCTGTATCGA-TTTGTTTAGCTATATATTGCGTTA-TAATGTGTTG--GTCCTTTAAATTAAAATT
gi|20 : ttggTTG---TTAAATCCTTGT---AT---TTTTTCATGTCA--ATATAAACCA-TGATTATTGGTATACA-AAGTC-T--TGC--CAACGTTCTGATT-TCATTTG---TTATTTA-------GATA-AAGT-----CACTG---T------TAATATTTGCACC-------T-C----AA-TAACAGCT-AA-
gi|21 : caattgctaaaaatgatattgtatgtaatactAATTGAGAT--GTGATTTG-TGATATTTA-TT--A--ATT---TTGACGGTAATATTG-T---G----TT-GA--AG-T--GCCCA--TAT-GGGA--TA-------GA---TAGAA--TTTGCT-GAAAATATA-T-AT-GATGTC-TGCCAAAAC-T-CTA---TTGT---GAAACATGGTTGAA-ATGT-GA-CAAAC-TTTTAT-TATGTAT-G
gi|22 : A--TGT-GATGTGA---TAAAAGAT--GCTTGAAA---TTAT-AT-G-TATC-TGCCAAAAACT-CTA---T-GT---G-AACGT-----AG-A--T-GA-CAACATTTTTATGTATGTAT-CA-TTT-TTTG-----------------TAATGTGTTGAGGTCT-TGAAA-TAAAt
gi|23 : a--CTTATGAGTTACTAGTATTCGTAGGATA-----CTGACATCTTTAATTGCGATACTTTGCT-----------TATA--ATGCTCC-ATGTAATC--------T--TCT----TTACATAAA-----T--------GT----------GA-TC---TTGA-TAAC---AA-ACATACTGTGAT--ATGACT-taaaggattccatca
gi|24 : aCTTACGAT------CTCA-------A-CGA--ATTTTTTAG------------TATATTGTGATCCTATA-AACCATAT--AGT---CT----T---AT--------T--------ACATAAAAAGGTGA-TT---TTA--TTAA---AA-CATAGCTGATAT--GTGACT---TGATAT
gi|25 : attAGTAGATAACA-AACTTTCACTAC-ACA-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--T
gi|26 : ggttATCATGTAT-ACAATATTGCTCATGGAGATGCTTCTCAT------TATATGTGTTATAATTTTACT--CTTG--TAAATCAAA-CTCATGG----------TTA------TAATAC
gi|27 : AGAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAAATCTAAAAT-TCTACT-CATTTTAC-ATTG---TTAAATCCTTGT---A----TTTTTa
gi|28 : GT-GGCTTGA---TAAAAA-T--GCT-GAAA---TC-TCCT-G-TTTC-TGCCTAAAA-T-CTG---C-GTGTCGAAACATG--TTCA-AT-TCGATCAGA---TTTAT-T
gi|29 : TTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCA-CTAAA-TAAATTCCAATTC
gi|3 : tatttcgaaatatctaaAGTAAATAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGC-ATGTTGT-TTGG-TCCACCAAGAAAA-CTTCAAAA---ACAAA-ATTTGTCCA--TAATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGATAGACAATATG-----CTGTCAGGTGAAAATA-TAAT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AAAT---------TAA--------A-A-T-------TTT-TGTA------TA-----------------GACATCAAATGTAGACAGTTGC---T--CTCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCCTGTTCATCGT-G-GTA---T-GCAGGGCTTAC--GAA---GA---CTCTAAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTATTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTAAATGAC-AGGGTCAAACAACATAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAAATTTGCT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTTTG-TAC-AACCTCGTATTAAGGGTA---GAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-CAATGTCAAGGTCGA-AAAGAGAAAGATAAATTTTAAGAAATCTTT-AAAAAC-ACATCT----------------------TTTTCAAGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTAC-ATTG---TTAAATCCTCGT---A----TTTTTCATGTCA--ATATAAACCA-TGGTCATTGGTATAAACAGGTTTTTCTGC--CAAAGTTTTGATTATCATTTGATTTTATTTA-------GATA-GAAT-----CA-TG---T------TA-AATTTGCACT-------T-C----AA-TAACAGCT--A-T-AAGGATCTCCCATTGGATAATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----CTATTCT-T------------TAT---GTGTTCT-ATTTATCCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTAAGT-G-TGATACTTA-TT--TT-ATT---TTGATT-TAATATTG-TTGGG----TT-TTTTTT-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TC-C-AT-G-TATC-TGCCAAAAA-T-TTA---T-GT---GAAA-ATG--TGAG-AC-T-GC-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTTC-TAAAA-TAAAATTCAATTCaa
gi|30 : AGA-AAATGTCAAGGTGGA-AAGGAGAAAG--------------ATCTTT-AAAAAC-ACATCT----------------------TTTTGA
gi|31 : CAAACTTAT-CTC-TA-ACAGACCATTCTAGAAT-TCTGTT-CATT
gi|4 : gAGCA----GT-CATCAT-AATTAT--TAC-AAACTCGTATTAAGGATA---AAG---A---A--------GATGA--TC------TTTTTTTGTAAAATCGCCATCAAAGA-CTTGAATAATTTTAC---GA-AAATGTCAAGGTGGA-AAGGGGCAAGATAACTTTTAAGAGATCTGT-AAAAACCAC-TCT----------------------TTTTAATGAAGCAAAAG-CAAG-----------CTTAT----------AGACGATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---AGTTTTTTTTTATGTCA---TATTAATTT-TGATTATTACTATACA-AAGTCTT---GC--TTAAGTTCTGATG-TCATTTG---TTATTTACATGTAGAATA-GAATATAATCACTG---T------TATCATTTGCACTACTCACTT-C----AA-TAACAACT-AA-C-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----NCTT-------AAC----ATATTTTACT-----------TATA--GTGCTCC-ATATAACCGTAT--AA---TCT----T---ATTACATAAAT--------GT----------GA-TC---TTGA-CTAA---AA-CCAAACTGTGAT--GTGATT-T-TAATA------T--TT-ATT---TTGATT-GAATATTG-----------T-TTTAAG-T--GTCCAA-T------A--TAT-GATGTGC---TAAAA--T--GCT-GAAA---TC-T-CT-G-TATC-TGCCAAAGA-T-TTA---T-GT---AAAAC--G--TGAG-AT-T-GA-CAAA---CTTAT--------------------------------G-TA-TAATTTGTTGA-GTCC-TTAAA-TAAAACTTAATTC
gi|5 : TAAATAACG-AA-TATCATTGTTATC-TTTAGGCAAAA--CTGAATGT-ATTTTAT-TTGGTTCCAA-AACAAAG-TTTTAAAATGTTCAAAA---TTTCCAAGTTGTATGTA-ATGGT-----aa
gi|5 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttaCA-ATGT-CATATTGATTATACCTGCA-GTGCATGGT-ACGTA---T-TCAGGGCTATC--TAA---GA---CCTTAAAGC-AAAAAC-TATAAAT-ATGTCAAAACAA-G-AT---GGT-TTGA-TTTGATCT-------ACATcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctacaatgtcatattgattatacctgcagtgcatggtacgtattcagggctatctaagaccttaaagcaaaaactataaatatgtcaaaacaagatggtttgatttgatctacatacccatgtt
gi|6 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttataaataacgaatatcattgttatctttaggcaaaactgaatgtattttatttggttccaaaacaaagttttaaaatgttcaaaatttccaagttgtatgtaatggtcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctaAATAAATAACATAATTGTCACTTC-ATC-T--CGGAAAAA--CTGAATGT-ATTCTGT-TCTG-TCC-CTAGGTAAA-Cacccatgtt
gi|7 : gctccatctggattccgaagttaagttgtcttgttacgtttattgcattatatttagagaataacacatctcaaagaaacgttcacaggtatggttatgttagattacaaaaagcatcacaactattcattaaatattcgtgtaataaattagtatatggggattgaaagcggctgttaaaatcatacttaagtaggccaagtatctagtagtaagaatctaaccaagagaaatagaagtgtggctgaccccaaggcagtatttttaaagttccccattaattattttgagttatgtcaatgacagtcaacaacaagcgtagatgcattgcaaagttgatccttcatgcagacgaaatgcaaatcctttattcacacagaatctaaaggtctttcaacataggtcctagaaaatgcttctgatgctAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGACCATGGACAAAGAGCAAGTGTTGACAACCAA-GCAC---TTCAT------AAG-----GTCAAT-ATGT-TTTGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCAT-------------GCTTAT-----------------------TATGTGTCATAA-----------------AATCAAA-CTCATAG----------TTACATGTATAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AA-------------------------------------------A--TGCCATCAAAGA-CTGGAATAATTT-TC-CCGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAATAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAA------------GCAAACTTAT-CTT-TA-AAAGACAATTCTAAAAT-TCTGTT-CGTTTTACAATTG---TAAAATCGTTAT---A----TTTTTCATGTC---ATATTAACCA-TGATTAcgg
gi|7 : TAA-TCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTATTT--TT-ATT---TTGATcataatcaaaaccaaactgtgacgtgtctgtgaatttatttttattttgat
gi|8 : aaaataaagtagtaagatttgttttagaccatggacaaagagcaagtgttgacaaccaagcacttcataaggtcaatatgttttgtgttagtgacagggtcaaacaacttagattaaatcatgcttattatgtgtcataaaatcaaactcatagttacatgtataatactagagcaagtcatcataattatgtacaacctcgtattaagggtaaaatgccatcaaagactggaataattttcccgaaaatgtcaaggtggaaaggggcaagataaattttaataaatctgtaaaaacacatctttttaatgaagcaaaagcaaacttatctttaaaagacaattctaaaattctgttcgttttacaattgtaaaatcgttatatttttcatgtcatattaaccatgattacaATATCAGTATATAAA--G-TGATTATTGGAATAAA-AAGTCTT---GC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAACT-AATN-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----CTGA-------A-C----ATATTT-AC------------TATA--GTGCTCC-ATATAACCATAT--AATATTAT----T---ATATAAA---T--------GC----------GA-T-------A-TCAA---AA-CCAAACTGTGGT--GTGACT-G-TGATATTTA-TT--TTTATT---TTAATT-TAATGTTT-TT-GT----TT-TTTTAG-T--GTACAA-TAT-GTGA--TGT-GAT--------AAAA--T--GCT-GAAA---TA-T-AT-G-TATC-TGCCAAAAA---CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGCTGA-GTCC-TTAAA-TACAATTCAATTC
gi|9 : TCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---TAACTGTTATTATTTGTACT-------T-CGATCAA-TAACAACT-AA-C-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----NNNN-------NNN----NNNNNNNNNNNNNNNNNNNNNTGTA--GTGCTTC-ATATAACTATAT--AAT---CTAGTGC---ATAAA-----T--------GC----------GA-TC---TTAC-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGAAATTTA-TT--TT---------GAGT-TAATATAG----GT----TT-TTTTAG-C--GTCC---TAT----A--TGT-GATGTGA---CACAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-GAAAG-GTTCAT-TATGTAT-AA-TTTGTGTG--TAT-T------------ATGTGATGA-ATCC-TTAAA-TAAAATTCAATa
blockSeqs : T C T A TT AA T A T T A TGT GAT AG C . T . A . T ATGCC TT T TT TAAAATTTTTGTATAAACATAAGAAACATCTA GGGTGG TA ATA A A T ACCT TGTT TG ATGTAG CT TT GCT C T TA CACA G . TAC T . . A AAA TCATAT TCCGC T A A C G T G C . T A GC CC A CAACTGTAGT CATGTA . TTA T T GA T . TGGATAGAGTTGGGGATC T AT A T T G C C A A GAA T C A ACGTTCTTTGAATGCCATTCTT A AA A TCTTG T A A T A GCC C AGTTT AGT A A C T TCT TC A ATT CATGTAG T ATAAT GGG AACTGT T ACTCACT G GATC A T T . T TAAGGACCCCTTTAGGCTTTATGGGTTATT TCATA ACATCTTTAATTGCG NNNNNNNNNNNN TT T A A A AGTCTTATTACATAAAAAGGT A . A . A TG T A T GA T . G TTTGGGTTT . A AA A GGTGAGGTGTA AGT AA TT T ATA A C C C T C A AGT T GTC C GT T G C T AT G C T GC A AT C TAT A G T T
blockSeqs : . C . . . . . . . T . GC GAT . C . . . A . . . . . . TAATAGGACACATAATGGAAGCATTTTAT T . . . . T . TGTT AC TA . . . C . C CACA . . . . . . . . . . . . A . T . G T . T A . . . . . . . . . A . . AAGATGGAGATT T A . . . . . A A A GAG . . A . A AA A CTT . G . . A . T GTTA A A . . T T . . C . . . . . A . . . . . . . . NNNNNNNNNNNNNNNNNNNNNNN N AACGA T . . A T A AATCTTATTATAAAAATGC . . . . . . . . . . T . . TTGGGT . . . . GTGATGT . GA . . A . . . A . . . . . . C . . . . . A . . T . . A C TTA T . . .
blockSeqs : . C . . . . . . . C . GC AT . . . . . . . . . . . . ATAGACACATAAGAAACATTTA T . . . . T . TGTT G TG . . . C . C ATGT . . . . . . . . . . . . A . G . G C . A G . . . . . . . . . G . . AAGATGATC T . . . . . . A A C TAA . . A . G A A CTT . G . . A . T AT A A . . T . . . . . . . . . A . . . . . . . . TAAGCCTTGAGCTTATGGGTCTA . GAAC T . . A T A AATCTTATTACATAAATGT . . . . . . . . . . . . . TTGGG . . . . GTGATGT . A . . . . . . . . . . . . . C . . . . . A . . . . . A C AA A . . .
blockSeqs : . T . . . . . . . T . . A . . . . . . . TAAAATTTTTGTATA T . . . . . . GTG G TG . . . A . C ACA . . . . . . . . . . . . A . G . . . . . . . . . . . . . . . G . . ATGGATC . . . . . . . C A A . . . A . . . A CTC . C . . . . T A A T . . T . . . . . . . . . T . . . . . . . . NNNNNNNNNNNNNNNNNNNNNNN . AAAC . . . A A A AATATTATTATATAAATGC . . . . . . . . . . . . . TTGG . . . . GTGATGT . . . . . . . . . . . . . . . C . . . . . A . . . . . A C TA A . . .
blockSeqs : . . . . . . . . . . . . . . . . G TT . . . A . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . A CTT . A . . . . A A A T . . . . . . . . . . . . T . . . . . . . . NNNNNNNNNNNNNNNNNNNNNNN . TAAC . . . A A A AATCTAGTGCATAAATGC . . . . . . . . . . . . . TTGT . . . . GTGATGT . . . . . . . . . . . . . . . C . . . . . A . . . . . A C TA A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A A . A . . . . . . . . T . . . . . . . . NNNNNNNNNNNNNNNNNNNNNNN . NNNN . . . A A A TTCTTTACATAAATGT . . . . . . . . . . . . . TT . . . . GGGATA . . . . . . . . . . . . . . . C . . . . . T . . . . . A C TA A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . TAAAGCCGGGTTATT . AAC . . . A A A TTATTATGTAAATGC . . . . . . . . . . . . . TT . . . . TTGA . . . . . . . . . . . . . . . C . . . . . A . . . . . A C TA A . . .
blockSeqs : . . . . . . CTTGATGAGTTAT . AAC . . . A A A AATTCTTATTGC . . . . . . . . . . . . . TG . . . . ATGT . . . . . . . . . . . . . . . C . . . . . C . . . . . A C TA A . . .
blockSeqs : . AAC . . . A G A TAAATAAATGC . . . . . . . . . . . . . GT . . . . ATAT . . . . . . . . . . . . . . . C . . . . . A . . . . . A . . A . . .
blockSeqs : . AAC . . . A A . TACATAAATGC . . . . . . . . . . . . . T . . . . ATGT . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . .
blockSeqs : . AAC . . . . A . AGTCTATACT . . . . . . . . . . . . . . . . . . GT . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . .
blockSeqs : . . . . . . AGTCTAT . . . . . . . . . . . . . . . . . . GT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : TGTT G** TG**** *** ******* ****** **** *** ANGATGATC********************** A* A* CTT** A** *** *** *** *** TTGG****** GTGATGT****
originalCons : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAG---A---T--------G--GA--TC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAGAAGTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTTTCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT--TGC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAGCT-AA-C-AAAGGTCCCCCATTGGA-AATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT-GG----TT-TTTTAG-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
finalCons : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGTG--GTATG----CAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTA---AAGANGATGATC----------------------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAGA-GTTTACAAACTTATCTT--TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTTTCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCTT---GC--CAAAGTTCTGATC-TCATTTG---TTATTTA-------GATA-GAAT-----CACTG---T------TATTATTTGCACT-------T-C----AA-TAACAGCT-AA-C-AAAGGTCCCCCATTGGA-AATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTGTTGG------TT-TTTTAG-T--GTCCAA-TATGTGATGT----GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 22222 1 22222 22222 11 11 22222222222222222222222222222222222222222222222222222222222222222 111111 11 111 1111 1111 111 111111 222 111 11111 1111111 111 111111 11111 111111 2222222222 111111 1111 111 444444444444444444444 11 5555555555555555555555 11 222 11111 111 11111111 111 111 111 1111111 11111 111 111111 11111111111111 33333333333333333333333333333333333 11111 222222222222222 222222222222 7777777777777777777777777777777777777777777777777 3333333333 11111111111 11
lowQualScore : 6 1 6 6 99 99 6 6 6 4 6 222 555 11 5 55555 0 55555 3 8 8 00000 11 8 11 66666666666666666666666666666666666666666666666666666666666666666 666666 11 444 6 6 3 4444 1111 000 444444 99 000 111 1 6 77 55555 5 5 888 5 5 6666666 5 000 666666 44444 5 5 1 6 2 6 2 5 999999 7 1 99 99 6 9999999999 999999 7777 111 6 6 77 6 3 777777777777777777777 3 55 6 6 6 5 0 5 4 1 1 333 6 6 1 9999999999999999999999 0 66 333 1 00000 5 1 5 5 7 000 1 33333333 5 222 1 5 6 111 99 5 555 8888888 5 44444 000 444444 3 66666666666666 4 4 5 0 5 55555555555555555555555555555555555 11111 222222222222222 111111111111 44 3 2 1 4 4444444444444444444444444444444444444444444444444 3 555 2 444 2 33 0 2 2 5 33 5 555 3 1111111111 3 3 44 3 00000000000 444 00 33 2 777 2 2 2 5 2 2 2 444 2 444 5 33 2 2 2 2 77 2 2 6 33 2 44 2 8888 3 2 2 2
lowQualScore : . . . . .. .. . . . . . ... ... .. . ..... . ..... . . . ..... .. . .. ................................................................. ...... .. ... . . . .... .... ... ...... .. ... ... . . .. ..... . . ... . . ....... . ... ...... ..... . . . . . . . . ...... . . .. .. . .......... ...... .... ... . . .. . . ..................... . .. . . . . . . . . . ... . . . ...................... . .. ... . ..... . . . . . ... . ........ . ... . . . ... .. . ... ....... . ..... ... ...... . .............. . . . . . ................................... ..... ............... ............ .. . . . . ................................................. . ... . ... . .. . . . . .. . ... . .......... . . .. . ........... ... .. .. . ... . . . . . . . ... . ... . .. . . . . .. . . . .. . .. . .... . . . .
lowQualScore : 7 0 7 7 22 22 7 7 7 2 7 666 000 00 0 00000 0 00000 2 0 0 00000 00 0 00 00000000000000000000000000000000000000000000000000000000000000000 000000 00 000 7 7 2 2222 7777 222 333333 22 888 777 0 7 77 77777 0 0 888 0 0 2222222 0 000 444444 33333 7 7 7 7 5 7 5 2 222222 5 5 22 22 7 2222222222 222222 0000 777 7 7 77 7 3 333333333333333333333 2 88 7 7 7 7 7 7 3 4 3 000 7 7 7 2222222222222222222222 8 55 222 4 00000 7 7 7 7 3 000 0 11111111 7 999 0 7 7 777 22 7 777 6666666 7 33333 000 444444 6 66666666666666 4 4 0 5 0 88888888888888888888888888888888888 77777 222222222222222 999999999999 22 1 3 8 2 8888888888888888888888888888888888888888888888888 1 444 7 777 7 44 5 7 9 7 99 7 000 1 5555555555 1 1 22 1 22222222222 777 00 77 7 333 7 7 7 3 7 7 7 777 7 777 0 77 7 7 7 7 77 7 9 2 99 9 33 5 5555 4 9 9 9
consensus : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTAAAGAAGATG--------GATC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAG-A-GTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTT-TCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCT---TG--CCAAAGTTCTGATC-TCATTTG---TTATTTA-------GA-TAGAAT-----CACT---GT------TATTATTTGCACT-------T-C----AATAACAGC-TAA-C-AAAGGTCCCCCATTGGA-AATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT-GG----TT-TTTTAG-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
Reference ( family-1243 ) : AGTAGATAACA-AACTTTCACTAC-ATC-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--TAATATGTACATGGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AAT-------TTT-TGTA------TA-----------------GACGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-GCAGGGCTTAC--TAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACG-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTAAAGANGAT---------GATC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAAA-CAAG-A-GTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TNAAATCCTTGT---A----TTTT-TCATGTCA--ATATNAACCA-TGATTATTGGTATACA-AAGTCT---TG--CCAAAGTTCTGATC-TCATTTG---TTATTTA-------GA-TAGAAT-----CACT---GT------TATTATTTGCACT-------T-C----AATAACAGC-TAA-C-AAAGGTCCCCCATTGGA-AATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT-GG----TT-TTTTAG-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATTC
gi|1 : TAA-ATGT---AGT-GAAAGTTTGTTTTCTTCTAAACATTTTGAACAAGATTCGAGT--TGACAACCAA-G
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcacAGAAGAAAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TTCACCAAGAAAA-CTTCAAAA-ATACAGAGAATTTTCCA--TAACATGTA-ATGGTACAGAGTAAAGTATCTTGGTCT-AAAGATACACAATGTGGGGTGCTGTCAGGTGAAAATAATAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGAT---------TAA--------A-AGT-------TTTGTATAGACATTTA-----------------GACATCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCA------------------------GGGCTTAC--TAATAAGA---CTCTTAAGA-ATAAAC-TACAAGTCACC-CAAAATAC-A-GT---A---------------T-------AGATCTTGGACAAAGACCAGGTGTTGACAACCAA-GCAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTAGTGAC-AGAGTCAAACAACTTAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCATTACATGTATACGTGTCATAATTTTACT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACTATCCAGAGCA---AGT-CATTAT-AATTATG-TAC-AACCTCGTA-TAAGGGTAAAGAAGATG--------GATCTTTTTTTTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGG-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAAGAAATCTGT-AAAAAC-ACGTCT----------------------TTTTAATGAAGCAAAAAGGAAGAA-GTTTACA-------------A-AGAGAAAATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---A----TTCT-TCATGTC---ATATTAACCA-TGATTATTGCTATACA-AAGCCT---TG--CCAAAGTTATTATC-TCATTTG---TTATTCA-------GA-TAGAAT-----CACT---CT------TATTATTTGCACT-------T-A----AAAAACAAC-TAA-CNNNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----CTG--------AAC----ATATTTTAC------------TATA--GTGCTCA-ATAT-----T-T--AA---TCT----T---ATTACATAAAT--------GC----------GA-TCCTTTTAG-TTAGTTTAG-TCAATATGTGAT--GTGAggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaatatttaatcttattacataaatgcgatccttttagttagtttagtcaatatgtgatgtgataaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|1 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttATATTTAATC--TT-ATTACATAAATG-CGATCCTT-TT-AG----TTAGTTTAG-T-----CAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAC-TTTTAT-TATGTAT-AA-TTTGTTTG--TAT-TA-TGGG-TA-TTATGTGTTGA-GTTC-CAATA-TAAAATTCAATTCtaaaatgctgaaatctatgtatctgccaaaaatctatgtgaaacatgtgagattgacaaacttttattatgtataatttgtttgtattatgggtattatgtgttgagttccaatataaaattcaattc
gi|10 : attgtcaacgtttactttatgcagatgacattgtaattcttttttcacatagaaatcctgagaaaatatctcagcaccttggttgtcaactcgaatcttgttcaaaatgtttagaagaaaacaaactttcactacatttaggcaaaactgaatgtatgttgtttggttcaccaagaaaacttcaaaaatacagagaattttccataacatgtaatggtacagagtaaagtatcttggtctaaagatacacaatgtggggtgctgtcaggtgaaaataatagtcatgtctattataggaaaagtaaatgctagattaaaagttttgtatagacatttagacatcaaatgtagacagttgttatctagtgccctcattcagtgttattttgattatgcagggcttactaataagactcttaagaataaactacaagtcacccaaaatacagtatagatcttggacaaagaccaggtgttgacaaccaagcacttcacaaggtcaatatgttatgtgttagtgacagagtcaaacaacttagattaaatcatgtatacaatattgctcatggaaatgctcctcattacatgtatacgtgtcataattttactcttgtaaatcaaactcatagttataatactatccagagcaagtcattataattatgtacaacctcgtataagggtaaagaagatggatctttttttttttttgtaaatgccatcaaagactggaataatttaccaggaaatgtcaaggtggaaaggggcaagataaattttaagaaatctgtaaaaacacgtctttttaatgaagcaaaaaggaagaagtttacaaagagaaaattctaaaattctgttcattttacaattgtaaaatccttatattcttcatgtcatattaaccatgattattgctatacaaagccttgccaaagttattatctcatttgttattcagatagaatcactcttattatttgcacttaaaaaacaactaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaacatattttactatagtgctcaTTGCACA-------T-C----AATAATAGC-TAA-C-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNNN----CTGA-------A-C----ATATTTTAC------------AATA--GTGCTCC-ATATAA--AT-T----T--TAT----T---ATGTAAA---T--------GC----------GA-TC---TTCA-TCAA---AAACCAAACTGTGAT--ATGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATAT-G-TT-GG----TT-TTTTAG-T--GTCCAT-AAT-GTGA--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TC-C-AT-G-TATC-TGCCAAAAA-T-T-----T-GT---GAA--ATG--TGAG-AT-T-GA-CAACA-TTTTAT-TATGTAT-GATTTTGTTTG--TAT-TA-TGCG-AA-T-ATATGTTGA-GTCC-TTAAA-TAAAATCCAATTC
gi|11 : T------TATTATTTGCACT-------T-C----AATAACAAC-TAA-C-AAAGGACCCCCATTGGA-AA---------CTTGA-------TGAGT---TAT---CCTTAGGATA-----CTGA-------A-C----ATATTTTAC------------TAAA--GTGCTCC-ATAT---CTTATTAAAT--A----------AA--------T--------GC----------GA-TC---GTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TT--TT-ATT---TTGATT-TAATATTG-TT--------T-TTTTAG-T--GTCCAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TT-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-CTTTAT-TATGTAC-CA-TTTGTTTG--TAT-TA-TGCG----TAATGTGTTGA-ATCC-TTAAA-TAAAATTCAATTCaa
gi|12 : AATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGACAGACAATGTG-----CTGTCAGGTGAAAATA-TAGT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AGATATAGACACATAAG-------A-AAC-------ATT-T----------A-----------------GATGTCAAATGTAGACAGTTGT---T--ATCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCATGTTCATCGT-G-GTA---T-ACAGGGCTTAC--CAA---GA---CTCTCAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCATT-ATGC-TATGTGTTAa
gi|13 : ATAAGGACCCCTTTAGGCTTTATGGGT---TATT--CCTT-GGATA-----CCTG-------AAC----ATAC------------------ACA--GTGCTCC-ATATACCCTTAT--TA----CA----T---AAA-------T--------GC----------AAATC---TTAAATCAA---AA-CCAAACTGTGA--------------ATATTTA--------ATT---TTCATT-TAATATTG-TT--------C-TTTTAG-A--GTCCAAATAT-TTGA------AATGTGA---TAAAAAAT--GCT-GAAAA--TC-T-AT-G--ATC-TGCCCAAAA-TACTA---T-GT---GAAACATG--TGAG-AT-T-GA-CA-----TTTAT-TATGTAT-AATTTTGTTTG--CAT-T------------ATGTGTTGA-TTCC-TGAAA-TAAAATTCAATT
gi|14 : acaacaaat----CCTTAGGATATCATACTGA-------A-C----ATATTTTAC------------TATA--GTGCTCC-ATATAACCATAT--AAT---CT----T---AT--------TATAAAAATGC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGATATTTA-TG--TG-ATT---TTGATT-TAATATTG-T--------TT-ATTTAG-T--GTCCAA-T------A--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TT-C-AT-G-TATC-TGCCACAAA-A-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA-CATAA-TTTTAA-TATGTAT-GA-TATGTTTG--TAT-TA-TGCG-TATTTATGTGTTGA-GTCC-TTTAA-TAAAATTCAATTCa
gi|15 : tA-TAGT-CATG-----TCTAGT--ATATGAAAAGTAAAT-GTT--AGAT---------TAA--------A-A-T-------TTT-TGTA------TAAACATAAGAAACATCTAGACGTCAAATGTAGACAGTTGC---T--ATTT--AGTGCCCT---CATCCA-GTTT-TATTT------------------CATCGT-G-GTA---T-GCAGGGCTTAT--TAA---GG---CTCTCAAGA-ACAAA------------------ATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGATCTTGGACAAAGAGCAATTGTTGACAGCCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTTACTGAC-AGGGTCAAACAAC
gi|16 : tgtgcaggtcGTATTGGCAAGTAG-ATAT---ATTAT------TAG------TAAAT-CGGT-T-TG-GTCAGTCACCAGAGCCAAACAACTTAGATTAAATCATGTTT-ATAATACTGCTCATGGAATTGTT-----T------TACAT---TCATA------CT--ATTG--TAA-TAAAA-ATCATTG----------TTG------TAATACT----TGTACA---AGT-CATCAT-AATTATA-TAC-AACCTCGCATTGAAGGTAAAGAAGATGGA------GATT------TCTTTTTGTAAA--TGACATCAAAGA-TTGAAATAATTT-AC-CGGA-TAATGTAAAGGTGG--AAGGGGCAAGATAAA
gi|17 : AC------------TATA--GTGCTCC-ATATAACCATAT--AGT--C------T---AT----------------------------------------A-CTAA---A---CAAACTGTGAT--GTGAAT-G-TGATATTTA-TT--TT-ATT---TTGATT-GTATATTG-TT-GGGT--TT-TTTTAG-T--GTCTAA-TAT-GTGA--TGT-GATGTGA---TTAAA--C--ACC-GAAA---CC-C-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAA-ATG--TGAG-AT-T-GA--AAAA-TTTTAT-TCTGTAG-GA-TTTGTTTA--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCC-TTAAA-TAAAATTCAATT
gi|18 : TAA-TCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTA-TT--TTTATT---TTGAT------ATT----------------TTAA-T--GTCCAA-TAT-GT--------GATGTGA---TAAAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-TT---GAAACATG--TGAG-AT-T-GA-CAAAT-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TG---------TGTG--GA-GTCC-TTAAA-TAAGATTCAAT
gi|19 : tttcatgtcatattaaccatgattacaAGTAGATAACA-AACTT-CACTAC-AGCAT--AGGCAAAAAACTGAATGTTATGTTGTATTGG-TC-ACTAAAAAAAACTTCAAAA-GCACAAAGATTTTTCCA--Tacaa
gi|2 : gattgtcaacttttacttttgcagatgacagatgaattaattcttatttcacatagggaatcctgagaaaatatttcaacaccttgtgtgtcaactcgaatcttgttcaaatggttAGGTATCTTGGTCTTACAGACAGACAATGTG-----CTGTCAGGTGAAA-TA-TAGTTCATGATGCCTCTATTTTATAGGAAAAGTAAATTGCTTTAGAC---------TAATAGGACACATAATGGAAGCATTT-TAT--------------------------GATGTCAATTGTAGACAGTTGTGGGTGGATCTTAAGTGCCCTATACATTCAAGTGTATTTTTTGAT-AT----GCATGTTCATCGTTG-GTAATGTAGCAGGGCTTACCTTAATT-GAGCTCTTTCAAGATACAAATATACAAGT-ACA-CAAAATAAGA-GTTACAGTTAAGA-TTTGTTTT-------AGAT-TTGGACAAAGAGCAAGTGTTGACAACAAAAGTACAAATTCACTCATATAAATCCGCGTCCATTATGCATATGTGTTAATGAC-AGGGTCAAACAACTTAGATTAAATCATTTATTACAATATTGCTCATGAAAAT-CTCCTCAT------TATATGTGTCATAATTTTACTGCCTTGCCTAAATCAAAACTCATAACAACTGTAGTTTA------TAATACT----A-AGCATTAAGTTCATCATTAATTTTGATACTAACCTCGTATTAAGGTTAAAGTGGATAGAGTTGGGGATC------TTTTTT-GTAAAA-TGC-ACCAAAGAACTGGAATAATTT-ATTCAGAGAAATGT-ACCGTGGACAAGGAG-AAGAT-------------TCTGTTAAAAAC-ACATCTACGTTCTTTGAATGCCATTCTTTTTTGATGA-GCAAAA--CAAG-A-GTTTACAAAATTATTCTTGTATAAAGACCATTCAAAAATATGTGTTTCATTTTACAATTGGCCTCCAATCCTTGTGTTA----TTTT-TC-TGTCA--ATATAAACCAATGATTATTGGTATACA-AAGTCT---TGCTCCAAAGTTT--ATC-TCATTAGC--TTATTTA-------GATTTGAAT-----CACTGGGGT------TAATATTTACACT-------TGCA---AATAACAGCTTAC-C-AAAGGTACCCCATTGGA-AATAA----------AG--C---CGGGT---TATT--CCTTAGGATA-----CTG--------AAC----ATA-TTTAC------------TATA--GTGCTCC-ATAT-ACCAT-T--AGT--CTA----T---AC--------T------------------------------------A---AA-CAAAACTGTGATTGGTGAAT-GATGATATTTA-TTGATT--TT---TTGAAT-CGATATTGTTT-GGGTTTTT-TTTTAGATAAGTCTAA-TATGGTGAGGTGTAGATGTGGAGTTAAAC--A--ACC-GAAA---CC-C-ATCGCTATCTTGCCAAAAT-C-TTAAGTT-GT---GAAA-ATG--TGAGTAT-T-G---AAAA-TT---T-TCTGTATCGA-TTTGTTTAGCTATATATTGCGTTA-TAATGTGTTG--GTCCTTTAAATTAAAATT
gi|20 : ttggTTG---TTAAATCCTTGT---A----TTTTTTCATGTCA--ATATAAACCA-TGATTATTGGTATACA-AAGTCT---TG--CCAACGTTCTGATT-TCATTTG---TTATTTA-------GA-TAAAGT-----CACT---GT------TAATATTTGCACC-------T-C----AATAACAGC-TAA-
gi|21 : caattgctaaaaatgatattgtatgtaatactAATTGAGAT--GTGATTTG-TGATATTTA-TT--A--ATT---TTGACGGTAATATTG-T---G----TT-GA--AG-T--GCCCA--TAT-GGGA--TA-------GA---TAGAA--TTTGCT-GAAAATATA-T-AT-GATGTC-TGCCAAAAC-T-CTA---TTGT---GAAACATGGTTGAA-ATGT-GA-CAAAC-TTTTAT-TATGTAT-G
gi|22 : A--TGT-GATGTGA---TAAAAGAT--GCTTGAAA---TTAT-AT-G-TATC-TGCCAAAAACT-CTA---T-GT---G-AACGT-----AG-A--T-GA-CAACATTTTTATGTATGTAT-CA-TTT-TTTG-----------------TAATGTGTTGAGGTCT-TGAAA-TAAAt
gi|23 : a--CTTATGAGTTACTAGTATTCGTAGGATA-----CTGACATCTTTAATTGCGATACTTTGCT-----------TATA--ATGCTCC-ATGTAATC--------T--TCT----TTACATAAA-----T--------GT----------GA-TC---TTGA-TAAC---AA-ACATACTGTGAT--ATGACT-taaaggattccatca
gi|24 : aCTTACGAT------CTCA-------A-CGA--ATTTTTTAG------------TATATTGTGATCCTATA-AACCATAT--AGT---CT----T---AT--------T--------ACATAAAAAGGTGA-TT---TTA--TTAA---AA-CATAGCTGATAT--GTGACT---TGATAT
gi|25 : attAGTAGATAACA-AACTTTCACTAC-ACA-T--AGGCAAAA--CTGAATGT-ATGTTGT-TTGG-TCCACTAAGAAAA-CTTCAAAA-GCACAAAGATTTTTCCA--T
gi|26 : ggttATCATGTAT-ACAATATTGCTCATGGAGATGCTTCTCAT------TATATGTGTTATAATTTTACT--CTTG--TAAATCAAA-CTCATGG----------TTA------TAATAC
gi|27 : AGAAA-CAAG-AAGTTTACAAACTTAT-CTT-TA-AGAGACAAATCTAAAAT-TCTACT-CATTTTAC-ATTG---TTAAATCCTTGT---A----TTTT-Ta
gi|28 : GT-GGCTTGA---TAAAAA-T--GCT-GAAA---TC-TCCT-G-TTTC-TGCCTAAAA-T-CTG---C-GTGTCGAAACATG--TTCA-AT-TCGATCAGA---TTTAT-T
gi|29 : TTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTCA-CTAAA-TAAATTCCAATTC
gi|3 : tatttcgaaatatctaaAGTAAATAACA-AACTTTCACTAC-ATT-T--AGGCAAAA--CTGAATGC-ATGTTGT-TTGG-TCCACCAAGAAAA-CTTCAAAA---ACAAA-ATTTGTCCA--TAATATGTACATAGT-----GTAAAGTATCTTGGTCT-ACAGATAGACAATATG-----CTGTCAGGTGAAAATA-TAAT-CATG-----TCTATT--ATAGGAAAAGTAAAT-GCT--AAAT---------TAA--------A-A-T-------TTT-TGTA------TA-----------------GACATCAAATGTAGACAGTTGC---T--CTCT--AGTGCCCT---CATTCA-GTGT-TATTTTGATTAT----GCCTGTTCATCGT-G-GTA---T-GCAGGGCTTAC--GAA---GA---CTCTAAAGA-ACAAAC-TACAAGTCACA-CAAAATAA-A-GT---AGT-AAGA-TTTATTTT-------AGATCTTGGACAAAGAGCAAGTGTTGACAACCAA-GTAC---TTCAC------AAG-----GTCAAT-ATGT-TATGTGTAAATGAC-AGGGTCAAACAACATAGATTAAATCATGTAT-ACAATATTGCTCATGGAAATGCTCCTCAT------TATATGTGTCATAAATTTGCT--CTTG--TAAATCAAA-CTCATAG----------TTA------TAATACT----AGAGCA---AGT-CATCAT-AATTTTG-TAC-AACCTCGTATTAAGGGTAGAGATG-----------GATC------TTTTTTTGTAAA--TGCCATCAAAGA-CTGGAATAATTT-AC-CAGA-CAATGTCAAGGTCGA-AAAGAGAAAGATAAATTTTAAGAAATCTTT-AAAAAC-ACATCT----------------------TTTTCAAGAAGCAAAAA-CAAGAA-GTTTACAAACTTAT-CTT-TA-AGAGACAATTCTAAAAT-TCTGTT-CATTTTAC-ATTG---TTAAATCCTCGT---A----TTTT-TCATGTCA--ATATAAACCA-TGGTCATTGGTATAAACAGGTTTTTCTG--CCAAAGTTTTGATTATCATTTGATTTTATTTA-------GA-TAGAAT-----CA-T---GT------TA-AATTTGCACT-------T-C----AATAACAGC-T-A-T-AAGGATCTCCCATTGGATAATAAG----CCTTGAG--CTTATGGGT--CTA----CCTTAGGATA-----CTGA-------AAC----CTATTCT-T------------TAT---GTGTTCT-ATTTATCCATAT--AAT--TCT----T---AT--------T--------GC----------GA-TC---TTAA-TCAA---AA-CCAAACTGTGAT--GTAAGT-G-TGATACTTA-TT--TT-ATT---TTGATT-TAATATTG-TTGGG----TT-TTTTTT-T--GTCCAA-TAT-GTGA--TGT-GATGTGA---TAAAA--T--ACT-GAAA---TC-C-AT-G-TATC-TGCCAAAAA-T-TTA---T-GT---GAAA-ATG--TGAG-AC-T-GC-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGTTGA-GTTC-TAAAA-TAAAATTCAATTCaa
gi|30 : AGA-AAATGTCAAGGTGGA-AAGGAGAAAG--------------ATCTTT-AAAAAC-ACATCT----------------------TTTTGA
gi|31 : CAAACTTAT-CTC-TA-ACAGACCATTCTAGAAT-TCTGTT-CATT
gi|4 : gAGCA----GT-CATCAT-AATTAT--TAC-AAACTCGTATTAAGGATAAAGAAGAT---------GATC------TTTTTTTGTAAAATCGCCATCAAAGA-CTTGAATAATTTTAC---GA-AAATGTCAAGGTGGA-AAGGGGCAAGATAACTTTTAAGAGATCTGT-AAAAACCAC-TCT----------------------TTTTAATGAAGCAAAAG-CAAG------------CTTAT----------AGACGATTCTAAAAT-TCTGTT-CATTTTACAATTG---TAAAATCCTTAT---AGTTTTTTT-TTATGTCA---TATTAATTT-TGATTATTACTATACA-AAGTCT---TG--CTTAAGTTCTGATG-TCATTTG---TTATTTACATGTAGAA-TAGAATATAATCACT---GT------TATCATTTGCACTACTCACTT-C----AATAACAAC-TAA-C-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----NCTT-------AAC----ATATTTTACT-----------TATA--GTGCTCC-ATATAACCGTAT--AA---TCT----T---ATTACATAAAT--------GT----------GA-TC---TTGA-CTAA---AA-CCAAACTGTGAT--GTGATT-T-TAATA------T--TT-ATT---TTGATT-GAATATTG-----------T-TTTAAG-T--GTCCAA-T------A--TAT-GATGTGC---TAAAA--T--GCT-GAAA---TC-T-CT-G-TATC-TGCCAAAGA-T-TTA---T-GT---AAAAC--G--TGAG-AT-T-GA-CAAA---CTTAT--------------------------------G-TA-TAATTTGTTGA-GTCC-TTAAA-TAAAACTTAATTC
gi|5 : TAAATAACG-AA-TATCATTGTTATC-TTTAGGCAAAA--CTGAATGT-ATTTTAT-TTGGTTCCAA-AACAAAG-TTTTAAAATGTTCAAAA---TTTCCAAGTTGTATGTA-ATGGT-----aa
gi|5 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttaCA-ATGT-CATATTGATTATACCTGCA-GTGCATGGT-ACGTA---T-TCAGGGCTATC--TAA---GA---CCTTAAAGC-AAAAAC-TATAAAT-ATGTCAAAACAA-G-AT---GGT-TTGA-TTTGATCT-------ACATcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctacaatgtcatattgattatacctgcagtgcatggtacgtattcagggctatctaagaccttaaagcaaaaactataaatatgtcaaaacaagatggtttgatttgatctacatacccatgtt
gi|6 : tgttcaccagggcagtcttctgggtcctttattattttgatatatgtcaatgacatgttaactagtgttgatgcgggttgtaaacttattttatacattgatgacagtgctattttacctgcacaaaaagatccagattttatatcagaaaagctcagtaaagttttaaatctgacttcacattggcttataaataacgaatatcattgttatctttaggcaaaactgaatgtattttatttggttccaaaacaaagttttaaaatgttcaaaatttccaagttgtatgtaatggtcataacaatgaatgtaaagaaaaagttaaaaattgaaaatcttggaattgtgattgacaactatttaactggtgaaagcattgatgaagcaactgttcagaaagtaaataacaggttgcaattttgaaccgacaagcctgtttcctagatacattttgtaaaaagactaagtcactttgtgtccagcacttctaAATAAATAACATAATTGTCACTTC-ATC-T--CGGAAAAA--CTGAATGT-ATTCTGT-TCTG-TCC-CTAGGTAAA-Cacccatgtt
gi|7 : gctccatctggattccgaagttaagttgtcttgttacgtttattgcattatatttagagaataacacatctcaaagaaacgttcacaggtatggttatgttagattacaaaaagcatcacaactattcattaaatattcgtgtaataaattagtatatggggattgaaagcggctgttaaaatcatacttaagtaggccaagtatctagtagtaagaatctaaccaagagaaatagaagtgtggctgaccccaaggcagtatttttaaagttccccattaattattttgagttatgtcaatgacagtcaacaacaagcgtagatgcattgcaaagttgatccttcatgcagacgaaatgcaaatcctttattcacacagaatctaaaggtctttcaacataggtcctagaaaatgcttctgatgctAAAATAA-A-GT---AGT-AAGA-TTTGTTTT-------AGACCATGGACAAAGAGCAAGTGTTGACAACCAA-GCAC---TTCAT------AAG-----GTCAAT-ATGT-TTTGTGTTAGTGAC-AGGGTCAAACAACTTAGATTAAATCAT-------------GCTTAT-----------------------TATGTGTCATAA-----------------AATCAAA-CTCATAG----------TTACATGTATAATACT----AGAGCA---AGT-CATCAT-AATTATG-TAC-AACCTCGTATTAAGGGTAAA------------------------------------A--TGCCATCAAAGA-CTGGAATAATTT-TC-CCGA-AAATGTCAAGGTGGA-AAGGGGCAAGATAAATTTTAATAAATCTGT-AAAAAC-ACATCT----------------------TTTTAATGAAGCAAAA-------------GCAAACTTAT-CTT-TA-AAAGACAATTCTAAAAT-TCTGTT-CGTTTTACAATTG---TAAAATCGTTAT---A----TTTT-TCATGTC---ATATTAACCA-TGATTAcgg
gi|7 : TAA-TCAA---AA-CCAAACTGTGAC--GTGTCT-G-TGA-ATTTATTT--TT-ATT---TTGATcataatcaaaaccaaactgtgacgtgtctgtgaatttatttttattttgat
gi|8 : aaaataaagtagtaagatttgttttagaccatggacaaagagcaagtgttgacaaccaagcacttcataaggtcaatatgttttgtgttagtgacagggtcaaacaacttagattaaatcatgcttattatgtgtcataaaatcaaactcatagttacatgtataatactagagcaagtcatcataattatgtacaacctcgtattaagggtaaaatgccatcaaagactggaataattttcccgaaaatgtcaaggtggaaaggggcaagataaattttaataaatctgtaaaaacacatctttttaatgaagcaaaagcaaacttatctttaaaagacaattctaaaattctgttcgttttacaattgtaaaatcgttatatttttcatgtcatattaaccatgattacaATATCAGTATATAAA--G-TGATTATTGGAATAAA-AAGTCT---TG--CCAAAGTTCTGATC-TCATTTG---TTATTTA-------GA-TAGAAT-----CACT---GT------TATTATTTGCACT-------T-C----AATAACAAC-TAATN-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----CTGA-------A-C----ATATTT-AC------------TATA--GTGCTCC-ATATAACCATAT--AATATTAT----T---ATATAAA---T--------GC----------GA-T-------A-TCAA---AA-CCAAACTGTGGT--GTGACT-G-TGATATTTA-TT--TTTATT---TTAATT-TAATGTTT-TT-GT----TT-TTTTAG-T--GTACAA-TAT-GTGA--TGT-GAT--------AAAA--T--GCT-GAAA---TA-T-AT-G-TATC-TGCCAAAAA---CTA---T-GT---GAAACATG--TGAG-AT-T-GA-CAAAA-TTTTAT-TATGTAT-GA-TTTGTTTG--TAT-TA-TGCG-TA-TAATGTGCTGA-GTCC-TTAAA-TACAATTCAATTC
gi|9 : TCTGATC-TCATTTG---TTATTTA-------GA-TAGAAT-----CACT---GTAACTGTTATTATTTGTACT-------T-CGATCAATAACAAC-TAA-C-NNNNNNNNNNNNNNNNN-NNNNNN----NNNNNNN--NNNNNNNNN--NNN----NNNNNNNNNN-----NNNN-------NNN----NNNNNNNNNNNNNNNNNNNNNTGTA--GTGCTTC-ATATAACTATAT--AAT---CTAGTGC---ATAAA-----T--------GC----------GA-TC---TTAC-TCAA---AA-CCAAACTGTGAT--GTGACT-G-TGAAATTTA-TT--TT---------GAGT-TAATATAG----GT----TT-TTTTAG-C--GTCC---TAT----A--TGT-GATGTGA---CACAA--T--GCT-GAAA---TC-T-AT-G-TATC-TGCCAAAAA-T-CTA---T-GT---GAAACATG--TGAG-AT-T-GA-GAAAG-GTTCAT-TATGTAT-AA-TTTGTGTG--TAT-T------------ATGTGATGA-ATCC-TTAAA-TAAAATTCAATa