lowQualScore : 22222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 11 55555555555555555555555555 111111111111 1111 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222222222222222 222222222222222 11 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 66666666666666666666666666666666666666666666666666666666666666666666666666666666 111
lowQualScore : 5 11 6 22 22222222222222222222222222 6 999999999999 4 5555 3 4 1 4 5 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 2 666666666666666666 444 555555555555555 3 44 4444 2 2 888 2 3 66 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 444 666 8888 8 33 2 0 5 3 6 2 0 1 6666 2 1 3 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1 555 0 6 1 11 3
lowQualScore : . .. . .. .......................... . ............ . .... . . . . . ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ . . .................. ... ............... . .. .... . . ... . . .. ............................................................................................................................................................................. . ... ... .... . .. . . . . . . . . .... . . . ................................................................................ . ... . . . .. .
lowQualScore : 0 00 0 00 00000000000000000000000000 0 111111111111 0 7777 8 0 1 4 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 9 9 222222222222222222 222 666666666666666 8 99 5555 1 2 555 5 5 88 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4 444 999 8888 1 44 7 9 8 9 7 7 1 1 1111 9 5 4 77777777777777777777777777777777777777777777777777777777777777777777777777777777 0 000 7 7 0 33 0
consensus : ACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA---ATTCAACCTGTAAGCAC----TTT-----T-AGCCTT-AAAGTAGGTCANGGTGCACCAATCCAG-CTG-AC-NCGT--TNCTC-TGA-A---A----NGTTG-TA-GATT--A----TTTCTCC-A---G-AGGAAGGTTGTGATA-TA-AACGT-----C------A-----ATA----T-----NTGTATCCATAATG-AG-AAAAAGTCCGGG-AAACT-GTTTGAC--A-------CNACTTTT-AGCC-T-GAAATACA--AA-AT---G--TAGGTCANGGTG----CACCAATCCAGCTGA---A----------TA-------G----TA--TTT-CTCCGA-GAGGGA-GG-T----TGTGAC-AAAATGTC-AGNGCAA------TAT-C-T-G----TA----TCC--A--ACGAGGA-A----AAGTCCNAG-A------TT-GAT-C----T-A-CTTT---T---------A-G--------TA-GGTC--ACGG-TGCA-CCAAT-G-CAGCTGA-AAT-----GCGAA---CTGA---A---------T--CT----CC--G----A--GAG----G-GAG-GC---T-GTG-AC-TAAAT-TTCAGGGCAATATCT-GTAT--C----CGT----AACGA-G-AAAAAG--T-C---GG-A--AAACTGTTT----G-ACCTACTTTT-AGCCCTA--AAGTAGGT-CACG--GC-T-----AC--CAATCCAGC--------AA-AC---TG--A----A-T--C----TG-TA-TT-CCTNC-AT----GA--GGGA-A--CT--TGTGAC-TA-AATTT----CA--G-GG-T-A-TA-TCTGTA---T---C--T-------TAA---CG-------AN----AA-A---AA---G----TCCGGAAAA--CT-GTTTGACCTACTTTT-AGCCCTAAAGT----AG-GTCACGGTGCACCAATCCAGC-----T------G-A------AA---TTGCG-------C-------T-AAGGGAAAN--ATTGTA----ACC-AATT--CAGTAC-TGTATATGCATCCATTATAAAAANAA
Reference ( gi|1 ) : ACAAGAGGACCGCAAACGATGCA-----------TCGCACGGACAATTCATTCAATCTGTAAGCAC----TGT-----T-AGCCTT-AACGTAGGTCAAGGTGGACCAATCCAG-CTG-AC-TTGT-TTTCTC-TGAGAGGTA----GGTTG-TA-AATT--A----TTTCTCT-A---G-AGAAAGGTTGTAAAA-GA-AACGT-----T------A-----ATA----T-----ACGAATCCATGGTG-CG-AGAAAGTCCATG-AAACT-CTTTGA---A-------TAACTTGT-AGTCCT-AAAGTACA--AA-AT---G--TAAGTTACGGTG----GATCAATTTAGCTGA---A----------TA-------G----TA--TTT-CTCAAA-GAGGGA-AG-T----TGTGAC-AAAATGTC-AGAGCAA------TAT-C-A-G----TA----TCC--A--ACGAGGA-C----AAGTCCCAG--------CT-GAT-T----T-A-CTTT---T---------A-G--------TA-AGTT--ATGG-TGCA-TCAAT-G-AAGCTGA-AAG-----GCGAA---CTGA---A---------T--CT----TC--G----A--GAA----A-GAG-GC---T-GTA-AT-TACAT-TTCATGGCAATACCT-GTAT--G----CAT----AACCA-A-AAAAAA--T-T---GA-A--AAACTGATT----G-ACCTACTTTT-AGCCCTG--AAGTAGGT-CACG--GC-T-----AT--CAATCCAGC--------AG-AT---TG--A----A-T--C----TG-TA-TT-CCTAC-AT----GA--GGGA-A--CT--TGTGAC-TG-ATTTT----CA--A-GG-T-A-TG-TCTGTA---T---C--T-------TAA---CA-------AC----AA-A---AA---G----TCCGCGAAA--CT-GTTTGTCCCATTTTT-AGCCCTAAAGT----AG-GTCATGGTGCACCAATCCAGT-----T------G-A------AA---TTGCG-------C-------TGGGGGGGGGG--GGGGTA----ATC-AATTACCAATGT-TGTACATGCATCTATTATGGAAAAAA
gi|2 : ACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA---ATTCAACCTGTAAGCACATTATGCACTTGT-AGCTTTTAAAGAAGACCATGATGCACCAATCCAG-CTGCAC-GTAC-GTGAAC-TGA-AGA-A----GGTTG-TA-AGT
gi|10 : ggaaaacagatgtaGCAC----TTT-----T-AGCTTT-CAAGTAGGGCATGATGCACCAATGTAGGCTG-AC-AC----TTCTCGTGA-ACTCA----CGT-------ATT--------TTCT-T-A---G-AGGA-GGTTGTAATA-TA-A-TGT-----CCAGTGCA-----ATA----TCTTGTATATATC-ATGATGACG-AAAAAGTCCAAGAAAACTATTTTGA---AACCTACTTAAGCTGT-AACAAT-GAAATACA--AA-Agcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaaatacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|7 : gtcaaattctaagccaaccaaaatAC----T-T-----T-AGCCTT-AAAATA-ATCCAGCTGA---AATGCAA-A-A-AC-TTGTATTTCTC-CGAGGGG-A----GCTTG-T--GATTAAA----TTTC--------------AGG--GTA-----A-TACAT------------------GTA----T-----CTGAATCCGTAACG-AA-AAAAGGTAAGGA-AAACT-GTTTGAC--A-------T-ACTTTT-GGCC---------CA--AA-A----G--TAGGTCACGGTA----TACCCAACGAGCTGA---A----------atcc
gi|15 : cactgacatAC----TTT-----TCAGCCCT-AAAGTAGGTCAAGGTGCACCAATCCAG-CTG-Aatacaaactcttactaacgtttattaaaggagacatcgtgagcattttgtacatgtatccgttgcggaaaa
gi|8 : ggggcatgataagttaataagtctggaaaacagttcgacctAC----TTT-----T-AGCCTT----------CAAGGTGCACCAATATGG-CCG-AT-TTGT-----------GAAAT-----GATCA-TG-ATGT--A----TTTCTCC-AATGG-GGGAGAATTGTGACA--A-AATTT-----T------AGTGCAATA----T-----TTGTATCCATCATA-AG-AAAAAGTCCAGG-AAACT-ATTTGA---aatg
gi|5 : gtatctatgaaaagtccaggaacagcatttctccaggagggaggcataatatgacaatgtcaatgcactatctgaaaaagtccaggaaactatgacctAC----TTT-----A-AGCCTA-AAAGCAGGTCATTGTGCACCAATCCAG-CTC-AC-----------A-TGA-----A----AATTG-CATGATT--ATGTCTTCCTCT-G---A-AG--AGGTTGTGTTG-TC-AGCG------C------A-----ATA----T-----CTGTATCCGCAATG-AG-AAAAAGTCCAGG-AAAGT-GTCTGAC--A-------TA
gi|11 : tgtgtttaaattttagggttgtgtctctaccagaataaagtctggaaaaccttgacctAC----TTT-----T-AGCTTT-CAAGTAGGGCATGATGCACCAATGTAG-CTG-AC-ACGT-GAACTC---------A----CGT------------A----TTTTTCTGA---G-AGGGAGGTTGTGATA-T--AATGTCAGTGC------A-----ATATCTGT-----ATATATCTATGATG-AG-AAAAAGTCCAAG-AAACT-ATTTGACCTACT-----TAAGCTGT-AACAAT-GAAATACA--AA-Actgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|5 : C----TTT-----T-AGGCTT-AAAGTAGGTCAAGGT
gi|4 : tgtgtttaaattttagggttgtgtctctaccagaataaagtctggaaaT-----T-AGACGT-AAAGTAGGTCACAGTGCACAAATCAAG-Ccaggtcattgtgcaccaatccagctcacatgaaaattgcatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|3 : catgtagttcacaatacaccaatccagcagaaatacaaaccaaacatatactcgtcccagaggaagcttgtgggtaaatatcagggtaaaacctgtgtccataacaaatacagctcggagaactgtttgatctatatttagcgcagttggatggatacaccaatccagctaaaatgcaaactcaactcatacttctccgaccgaaagcttgtgactaaattccagggaaatatctgcatgtattcaaaatgaaaataagttcagaaaactgacctacgtT-----T-AGCCCT-ATAGTACGTCAAGATACACCATTCCAG-CTG-ACATTAA-TTACTC-T------TACTCTTGTTGATA-CGTT--A----------C-A---G-AAAAAG---GTAAGG-GA-AACAT-----T------A-----aacaatgcaaattcttgctcttcttaattaagggaaatattgtaaccaaatttcagtgctgtatatgcatccaatatagaaacaactttaagtccagaaaacataacctcggacagccag
gi|8 : atccgtaaaggagaaaatatcggagaactgtttgacctacatttagcacggacggacagtcaaaatttgtatttgtccaagaggaggtanctgatacaccaggtatcagtatccgtaaaggagaaaagatcggagaactgtttgacctacatttagcatggacggacagtcaaaatttgtatttgtccaagaggaggtacataattaagggttaaatccgtattgatgtcggaaagtctggaaaactattatacctacatctagtatgggcgcgcagattttacaccaatccagctcaaatgtaaactgaagttgtattcctccaaaaggaagcttgtgattaattgcagggcaaaacctacatccatgacgaaaaaagtccgaaaaatgcatgacctacgt--A----TTTCTCC-A---GGAGGGAGGC-ATAATATGACAATGT-----C------A-----ATG----C-----ACTA-TCT--------G-AAAAAGTCCAGG-AAACT-AT--GA---C-------CTACTTTT-AGCCTTCAAGGTGCACCAATAT---GGCCGATTT---GTGAAATGATCA-------TGA--------------T--------G----TA--TTT-CTCCAATGGGGGAGAA-T----TGTGAC-AAAATTTT-AGTGCAA------TAT-T-T-G----TA----TCC--ATCATAAGAA-A----AAGTCCtctcggacggacag
gi|5 : gtatctatgaaaagtccaggaacagcTCTCT-AA--G-AGGAAGGTTGTGA----------T-----T------A-----ACC----T-------GTATCTATAGTG-GGGAAAAAATCTGGA-AAATT-GTTTGA---C-------CTACTTTT-AG--------ATATA--AA------G--TAAGTCAAGGTA----TACCAATGCAGCTGA---------------A-------A----TA--CTT-T---GA-GAGGAA-AC-TTG--TGTGAC-TAAA---C-AGGGCAA------CAT-C-T-A----TA----TCCGTA--ACAAAAACC----AAGaggaaactatttga
gi|15 : tgtgtttaaattttagggttgtgtctctaccagaataaagtctggaaaaccttgacctactttaagcctaaaagcaggtcattgtgcaccaatccagctcacatgaaaattgcatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacaAAGTCTGGA-AAACA-GTTCGA---C-------CTACTTTTCAGCCCT-AAAGTA-----------------GGTCAAGGTG----CACCAATCCAGCTGA---A----------
gi|6 : ggggcatgataagttaat--AA-ATTTAG--TAGGATATGATT----CACCAATCCAGCTGA---A------------------------------------AA-GAGAAA-AA-T----TGTGAC-CAAAT-TC-AG--CAC------TGTAC-ATG----CA----TCC--A---TTATAA-A----AAGTCC-AG--------A--AATAT----G-A-CGTCAGAT---------G-G---------A-CGCT--ATGA-TGGA-TGAAT-G-CA-C------------ACACA---CCGA---T---------T--CC----TCA-G----A--GAG----A-AAG-CT---T-GTG-AC-TAAAT-TTCAGGATAATATCT-TTAT--C----TGT----AACCA-A-AAATGT--C-C---GA-A--AAACTGTTT----G-ACCTACTTTT-atg
gi|11 : taaaaagtctggaaaattatacccc---G--TAGGGCATGATG----CACCAATGTAGCTGACACG----------TGAACTCACG----TA--TTT-TTCTGA-GAGGGA-GG-T----TGTGAT-ATAATGTC-AGTGCAA------TAT-C-T-GTATATA----TCT--ATGATGAGAA-A----AAGTCCAAGAAA-----CT--AT-T----TGA-CCT----------------------------ACTT--AAGC-TGTA-ACAAT-G-AAtttatattc
gi|2 : acttttagctttcaaCAATCCAGCTGA---A-------------------------A--TG----CAAA-GAAGC-----T----TGTAACTAAAAT--C-AGGGCAA------TAT-C-T-G----TA----TCCGTA--AC--GGA-A----AAATC---G--------TT-GAT-C----T-A-CTTT---CAGTTCTAA-A-G--------TA-GGTC--ACGG-TGCA-CCAATAG-AGGAAGA-AAT-----TTTGA---CCAA---A---------T---T----TC-------------------AAC-TC---T-GTACAT-T-CAT-T---TGACATT--CC-GT-----------T----A--CA-G-AAAAAA--G-TCCAGA-A--AAA-TGTTT----G-GTCTACTTCT-ATCTCGG--Aatacaaaa
gi|7 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaaAATCCAGCTGA---AATGCAAAAACTT-------G----TA--TTT-CTC--C-GAGGGG-AGCT----TGTGAT-TAAATTTC-AGGGTAATACATGTAT-C-T-G----AA----TCCGTA--ACGAAAA-A----AGGT--AAGGAAAA---CT-GTT-TGACAT-A-CTTT---TGGCCCAAA-A-G--------TA-GGTC--ACGG-TATACCCAAC-G--AGCTGA-AAT-----ACAAA---CTcagacgtggtgcaccaatcctgctaaaatacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|16 : cactgacatactttagccttaaaatTGA---T----------TAT------G----TA--TTT-CTCTGA-GTGTGA-GG-T----TGTGAC-AAAACGTC-AGTGCAA------TAT-C-T-G----TA----TCCATA--ATGAGAA-cttactaacgtttattaaaggagacatcgtgagcattttgtacatgtatccgttgcggaaaa
gi|14 : aggttccagctaacatgTGA---A----------TA-------GATTATACTTTT-CTGTGA-GAGGGA-GG-T----TATAAC-AAAATGTC-TGTGCAT------TAG-C-T-G----TA----TCT--------ATGA-A----AAGTCC
gi|8 : tataaccgacgGA---A----------CA-------G----CA--TTT-CTCCAG-GAGGGA-GG-CATAATATGAC-AA--TGTC-AATGCAC------TAT-C-T-G----AAAAAGTCC--A------GGA------AA---CTA----------T-GAC-C----T-A-CTTT---T---------A-GCC------T----TC--AAGG-TGCA-CCAAT-A-TGGCCGA-TTT-----GTGAA---ATGATC-ATGATGTATTT--CT----CC--A----AT-GGG----G-GAGAAT---T-GTG-AC-AAAAT-TTTAGTGCAATATTT-GTAT--C----CAT----CATAA-G-AAAAAG--T-C---CAGG--AAACTATTT----G-Aaggaa
gi|5 : gtatctatgaaaagtccag-------G----TA--CAT-CTCTAA-GAGGAA-GG-T----TGTGA--------TT-A-ACCTG------TAT-C--------TA----T----A--GTGGGGA-A----AAAATCTGGAAAATTGTTT-GAC-C----T-A-CTTT---T---------A-GATATAAAGTA-AGTC--AAGG-TATA-CCAAT-G-CAGCTGA-AA---------------TA-----------------CT----TT--G----A--G-A----G-GAA-ACTTGT-GTG-AC-TAAA----CAGGGCAACATCT-ATAT--C----CGT----AACAA-A-AA
gi|10 : tgtgtttaaattttagggttgtgtctctaccagaataaagtctggaaaaccttgacctactttaagcctaaaagcaggtcattgtgcaccaatccagctcacatgaaaattgcatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccct-------G----TA--TTTTCTTAGA-G---GA-GG-T----TGTAAT-ATAATGTCCAGTGCAA------TAT-CTT-G----TA----TAT--ATCATGATGA-CGAAAAAGTCCAAG--------ccaag
gi|4 : gtcaaattctaagccaaccaaaatgcacttttagctttcaagtagggcatgatgcaccaatgtaggctgacacttctcgtgaactcacA-GAGGAA-GC-T----TGTGGG-TAAATATC-AGGGTAA------AAC-C-T-G----TG----TCC--ATAACAAATA-C----AGCTCGGAGAACTGT--TT-GAT-C----T-A-TATT---T---------A-G--------CGCAGTTGGATGGATACA-CCAAT-C-CAGCTAA-AAT-----GCAAA---CTCA---ACTCATACT-T--CT----CC--G----ACCGAA----A-G----C---TTGTG-AC-TAAAT-TCCAGGGAAATATCT-GCAT--G----TATTCAAAATGA-A-AATAAG--T-T---CA-G--AAA---ACT----G-ACCTACGTTT-AGACGTA--AAGTAGGT-CACA--GTGC-----AC--AAATCAAGC--------AACAA---TGCAA----A-TTCT----TGCTC-TT-CTTAA-TT----AA--GGGA-AATAT--TGTAAC-CA-AATTT----CA--GTGC-T-G-TA-TATGCA---T---C--CAATA---TAG---AA-------AC----AA-CTTTAA---G----TCCAGAAAA--Caaaactattttgaaacctacttaagctgtaacaatgaaatacaaaaatcc
gi|15 : catgtagttcacaatacaccaatccagcagaaatacaaaccaaacatatactcgtcccCAG--------TTCGAC-C----T-A-CTTT---TCAGCCCTAAA-G--------TA-GGTC--AAGG-TGCA-CCAAT-C-CAGCTGA-AAataacctcggacagccag
gi|11 : ggggcatgataagttaataagtctggaaaaT-T----T-AGCTTT---C---------AAG--------TA-GGGC--ATGA-TGCA-CCAAT-G-TAGCTGA-CAC-----GTGAA---CTCACGTA---------T--TT----TTCTG----A--GAG----G-GAG-GT---T-GTG-ATATA-AT-GTCAGTGCAATATCT-GTAT--A----TATCTATGATGA-G-AAAAAG--T-C---CA-AG-AAACTATTT----G-ACCTACTTtg
gi|10 : actT-T----T-AGCTTT---C---------AAG--------TA-GGGC--ATGA-TGCA-CCAAT-GTAGGCTGA-CACTTCTCGTGAA---CTCACGTA---------T--TT----TC--T----T--AGA----G-GAG-GT---T-GTA-ATATA-ATGTCCAGTGCAATATCTTGTAT--ATAT-CAT----GATGACG-AAAAAG--T-C---CA-AGAAAACT-ATTTTGAA-ACCTACTTaagctgtaacaatgaaatacaaaa
gi|4 : gtcaaattctaagccaaccaaaatgcact-AGTTC-ACAA-TACA-CCAAT-C-CAGCAGA-AAT-----ACAAA---CCAA---A---------C--ATATACTC--GTCCCA--GAG----G-AAG-CT---T-GTG-GG-TAAAT-ATCAGGGTAAAACCT-GTGT--C----CAT----AACAA-A-TACAGC--T-C---GG-A--GAACTGTTT----G-ATCTATATTT-AGCGC-----AGTTGG---ATG--GA-T-----ACACCAATCCAGCT-------AA-AA---TGC-A----A-A--C----TC-AA-CT-CATAC-TTCTCCGACCGAAA-G--CT--TGTGAC-TA-AATTC----CA--G-GG-A-AATA-TCTGCA---TGTAT--T-------CAA----A-------AT----GA-A---AATAAG----TTCAGAAAA--CT-GA----CCTACGTTT-AGACGTAAAGT----AG-GTCACAGTGCACAAATCAAGCAACAAT------GCA------AATTCTTGCT-------CTTCTTAATTAAGGGAAAT--ATTGTA----ACC-AAATTTCAGTGC-TGTATATGCATCCAATATAGAAACAAaagctgtaacaatgaaatacaaaaatcc
gi|3 : catgt-TACA-CCAAT-C-CAGCTCA-AAT-----GTAAA---CTGA---AGTTGTAT--T--CC----TC--C----A--AAA----G-GAA-GC---TTGTG-AT-TA-AT-TGCAGGGCAAAACCT-ACAT--C----CAT----GACGA-A-AAAAGT--C-C---GA-A--AAA-TGCAT----G-ACCTACGTTT-AGCCCTA--TAGTACGT-CAAG--ATAC-----AC--CATTCCAGCTG------AC-AT---T---A----A-T----------TA-CT-CTTAC-ctttaagtccagaaaacataacctcggacagccag
gi|7 : atccgtaaaggagaaaatatcggagaactgtttgacctacatttagcacggacggacagtcaaaatttgtatttgtccaagaggaggtanctgatacaccaggtatcagtatccgtaaaggagaaaagatcggagaactgtttgacctacatttagcatggacggacagtcaaaatttgtatttgtccaagaggaggtacataattaagggttaaatccgtattgatgtcggaaagtctggaaaactattatacctacatctagtatgggcgcgcagatttAGCTGA-AAT-----GCAAAAACTTGT---A---------TTTCT----CC--G----A--GGG------GAG-CT---T-GTG-AT-TAAAT-TTCAGGGTAATACAT-GTATCTGAATCCGT----AACGA-A-AAAAGG--T-AA--GG-A--AAACTGTTT----G-ACATACTTTT-GGCCCAA--AAGTAGGT-CACG--G--T-----AT----ACCCAAC--------GA-GC---TG--A----A-tcttgttgatacgttacagaaaaaggtaagggaaacattatctcggacggacag
gi|9 : cactgacatactttagccttaaaataatccTGAGAAT-----GCAAA---CTGA---A---------T--CT----GC--A----A--TTATCTTATAAG-GT---T-GCT-AC-TCCAT-TTTCGGGCAGTACCT-GCAT--C----CTT----AACAA-A-AAAAAAAAT-CA--GG-A--AATTTGTTT----G-ACCTACTTTT-AGCCCTG--AAGTAAAT-CATG--ACAC-----AT--CAATCATGC--------AA-AC---TA--T----A-C--T----TA-TA-TT-CCTatacaaactcttactaacgtttattaaaggagacatcgtgagcattttgtacatgtatccgttgcggaaaa
gi|5 : tactttaaaccctaaagtaggtca---A---------T--CT----CT--A----A--GAG----G-AAG-GT---T-GTG-AT-TA---------------ACCT-GTAT--C----TAT----AGTGG-GGAAAAAA--TCT---GG-A--AAATTGTTT----G-ACCTACTTTT-AGATATA--AAGTAAGT-CAAG--GTAT-----AC--CAATGCAGC----------------TG--A----A----------A-TA-CT-TTGA--------GA--GGAA-A--CTTGTGTGAC-TA-A---A----CA--G-GG-CAA-CA-TCTATA---T---C--CG------TAA---CA-------AA----AA-ctgaaattgtttaacctctataaacctacagtaggccatggtgcacc
gi|8 : tgtgtttaaattttagggttgtgtctctaccagaataaagtctggaaaaccttgacctactttaagcctaaaagcaggtcattgtgcaccaatccagctcacatgaaaattgcatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtac---------T--CT----CC--A----G--GAG----G-GAG-GC-----ATA-AT----------ATGACAATGTCA---AT--G----CAC----TATCT-G-AAAAAG--T-C---CA-GG-AAACTA--T----G-ACCTACTTTT-AGCCTTC--A---AGGT-------GC-------AC--CAATATGGC--------CG-ATTTGTG--AAATGA-T--CATGATG-TA-TT-TCTCCAAT----GG--GGGAGA--AT--TGTGAC-AA-AATTT----TA--G-TG-CAA-TA-TTTGTA---T---C--CA------TCA---TA-------AG----AA-A---AA---G----TCCAGGAAA--CT-ATTTGccaag
gi|2 : gtatctatgaaaagtccaggaacagcattAA----A-GAA-GC---TTGTA-AC-TAAAA-T-CAGGGCAATATCT-GTAT--C----CGT----AAC---G-GAAAAA--T-C---G------------TT----G-ATCTACTTTC-AGTTCTA--AAGTAGGT-CACG--G--T-----G---CA--CCAAT--------AG-A-----G--------------------------------------GA--AGAA-A--TT--T-TGAC-CA-AATTT----CA--A---------C-TCTGTACATT---CATT-------TGA---CATTCCGTTACAGA-AA-A---AA---G----TCCAGAAAA--AT-GTTTGGTCTACTTCT-ATCTCGGA--C----AG-A-CGTGGTGCACCAATCCTGC-----T------A-A------AA---Ta
gi|3 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcAAAG--TCT---GG-A--AAACT-ATT----ATACCTACATCT-AGT--------ATGGGCGCGCA--GA-TTTTACAC--CAATCCAGCTCAAATGTAA-AC---TG--A----A-G--T----TG-TA-TT-CCTCC-AA----AA--GGAA-G--CT--TGTGAT-TA-ATTG-----CA--G-GG-C-A-AAACCTACA---T---C--CA------TGA---CG-------A-----AA-A---AA---G----TCCGAAAAA---T-GCATGACCTACGTTT-AGCCCTATAGT----AC-GTCAAGATACACCATTCCAGC-----T------G-A------CA---TTacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|15 : atccgtaaaggagaaaatatcggagaactgtttgacctacatttagcacggacggacagtcaaaatttgtatttgtccaagaggaggtanctgatacaccaggtatcagtatccgtaaaggagaaaagatcggagaactgtttgacctacatttagcatggacggacagtcaaaatttgtatttgtccaagaggaggtacataattaagggttaaatccgtattgatgtcgg-T---GG-A--AAACAGTTC----G-ACCTACTTTTCAGCCCTA--AAGTAGGT-CAAG--GTGC-----AC--CAATCCAGC--------TG-Aaattactcttactcttgttgatacgttacagaaaaaggtaagggaaacattatctcggacggacag
gi|7 : ggggcatgataagttaataagtcACT----G-ACATACTTT--AGCCTTA--AAATAA-T-C-CA--GC-T-----G---AAAT---GC--------AA-A--------A----A-C--T----TG-TA-TT-TCTCC-------GA--GGGG-AG-CT--TGTGAT-TA-AATTT----CA--G-GG-T-AATA-CATGTA---T---C--TGAATCCGTAA---CG-------AA----AA-A---AG---G----TAAGGAAAA--CT-GTTTGACATACTTTT-GGCCCAAAAGT----AG-GTCACGGTATACCCAACGAGC-----T------G-A------AA---Taatg
gi|15 : cTT----G-ACCTAC-TTT-AGGGCTGAAAAGTAGGT-Cacaaactcttactaacgtttattaaaggagacatcgtgagcattttgtacatgtatccgttgcggaaaa
gi|7 : ggggcatgataagttaataagtctggaaaacagttcT----G-ACCTACTTTT-GGGCCAA--AAGTATGT-CAggtgcaccaatccagctgaaatg
gi|5 : cactgacatactttagccttaaaataatccagctgaaatgcaaaaacttgtatttctccgaggggagcttgtgattaaatttcagggtaatacatgtatctgaatccgtaacgaaaaaaggtaaggaaaactgttT----G-ACCTGCTTTT-AGGCTTA--AAGTAGGT-CAAG--GT-T-----TT--Ccggtatacccaacgagctgaaatacaaactcttactaacgtttattaaaggagacatcgtgagcattttgtacatgtatccgttgcggaaaa
gi|9 : tgtgtttaaattttagggttgtgtctctaccagaataaagtctgTACTTTA-AACCCTA--AAGTAGGT-CATGA-G-------------AAT---GC--------AA-AC---TG--A----A-T--C----TG-CAATTATCT-T-AT----AA--GG-------T--TGCTAC-TCCATTTT----CG----GG-C-AGTA-CCTGCA---T---CC-T-------TAA---CA-------AA----AA-A---AA---AAA--TCAG-GAAA--TTTGTTTGACCTACTTTT-AGCCCTGAAGT----AA-ATCATGACACATCAATCttgtgcaccaatccagctcacatgaaaattgcatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|11 : ACTTTT-AGCTTTC--AAGTAGGG-CATGATGC-------AC--CAATGTAGC--------TG-ACACGTG--A----ACT--CA---CG-TA-TT-TTTCT-GA----GA--GGGA-G--GT--TGTGATATA-ATGTCAGTGCA--A-TA-T-C-TG-TATATA---T---C--TA------TGA---TG-------AG----AA-A---AA---G----TCCAAGAAA--CT-ATTTGACCTACTTatgcaaactatacttatattcctctgaaattgtttaacctctataaacctacagtaggccatggtgcacc
gi|6 : A-TT-CCT-C-A-----GA--GAGA-AAGCT--TGTGAC-TA-AATTT----CA--G-GA-T-AATA-TCTTTA---T---C--TG------TAA---C---------C----AA-A---AAT--G----TCCGAAAAA--CT-GTTTGACCTACTTTT-aagctgtaacaatgaaatacaaaa
gi|17 : taaaaagtctggaaaattataccccaaatttagtaggatatgattcaccaatccagctgaaaagagaaaaattgtgaccaaattcagcactgtacatgcatccattataaaaagtccagaaatatgacgtcagatggacgctatgatggatgaatgcacacacaccg--CT--TGTGAC-TA-AATTT----CA--G-G--------------A---C---C--G-------TAA---CG-------G-----AA-A---AA---G----TCCG-GAAA--CA-GTTTGtttatattc
gi|5 : at--TGTGTT-TA-AATTT----TA--G-GG-T--------TGTG---T---C--T-------CTA---CC-------AG----AATA---AA---G----TCTGGAAAA--CC---TTGACCTACTTTA-AGCCTAAAAGC----AG-GTCATTGTGCACCAATCCAGC-----TCACATGA-A------AA---TTGCacttagtgttctttgtcttc
gi|12 : TTT----CAGCA-GAAT-A-TA-TC-GTA---T---C--C-------AAAATTCG-------AG----AA-A---AA---GGTGTTTTAAGAAAGCTT-ATTTGGCCTCCTTT---GTCCTAAAGTCAGAAGCGTCGCCGTGTGCCAATTAAGC-----A------C-A------AA---TTGCA-------C-------atgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|5 : tgaacaaaCTGTA---T---C--T---------A---TA-------GTGGGGAA-A---AA---A----TCTGGAAAA--TT-GTTTGACCTACTTTT-AGATATAAAGT----AA-GTCAAGGTATACCAATGCAGC-----T------G-A------AA---Taaatggaatctgtattttagaggcagattgtgtaaccacatttcaggg
gi|15 : tgtgtttaaattttagggttgtgtctctaccagaataaagtctggaaaaccttgacctactttaagcctaaaagcaggtcattgtgcaccaatccagctcacatgaaaattgcatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaac----AA-T---AA---G----TCTGGAAAA--CA-GTTCGACCTACTTTTCAGCCCTAAAGT----AG-GTCAAGGTGCACCAATCCAGC-----T------G-A------AA---Tactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|8 : ggggcatgataagtt----AA-A---AA---G----TCCAGGAAA--CT-A--TGACCTACTTTT-AGCCTTCAA--------------GGTGCACCAATg
gi|6 : gtatctatgaaaagtccaggaacagcatttctccaggagggaggcataatatgacaatgtcaatgcactatctg----AA-A---AA---G----TCTGGAAAA--TT-AT--ACCCCAAATTT-AG--------T----AG-GATATGATTCACCAATCCAGC-----T------G-A------AA--------------------------AGAGAAAA--ATTGTG----ACCAAATT--CAGCAC-TGTACATGCATCCATTATAAAAAatggccgatttgtgaaatgatcatgatgtatttctccaatgggggagaattgtgacaaaattttagtgcaatatttgtatccatcataagaaaaagtccaggaaactatttga
gi|5 : tTGACCTGCTTTT-AGGCTTAAAGT----AG-GTCAAGGTgtccagaaatatgacgtcagatggacgctatgatggatgaatgcacacacaccgattcctcagagagaaagcttgtgactaaatttcaggataatatctttatctgtaaccaaaaatgtccgaaaaactgtttgacctactttttttatattc
gi|10 : tgtgtttaaattttagggttgtgtctctaccagaataaagtctggaaaCACTTTT-AGCTTTCAAGT----AG-GGCATGATGCACCAATttgtgcaccaatccagctcacatgaaaattgcatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|11 : gtcaaattctaagccaaccaaaatgACTTTT-AGCTTTCAAGT----AG-GGCATGATGCACCAATGTAGC-----T------G-ACACGTGAAC--TCACGTATTTTTC-------TGAGAGGGAGGTTGTGATATAATGTC-AGT--GCAATATCTGTATAT--ATCTATGATGAGAAAAAgtaggctgacacttctcgtgaactcacgtattttcttagaggaggttgtaatataatgtccagtgcaatatcttgtatatatcatgatgacgaaaaagtccaagaaaactattttgaaacctacttaagctgtaacaatgaaatacaaaaatcc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTAAGGGAGAAATTGTAGTCATATTGCAATGCTGTACATGACACCGTTAAGAAAGAAAATTCCACCAGACATGACTTCAATTGGAGAGCCAGC
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 2222222 222 222 4444444444 1 55555555555555555555555555555555555555 33333333333333333333333333333 11 11 22 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 44444444444444444444444 1111 3333333333 5555555555555 33333333333333333333 99999999999999999999999999999999999999999999999999999999999 111111111 2222222222 55555555555555555555555555555555555555555555555555555555555555555555 2222 1111 333333333333333333333333333333 88888888888888888888888888888888888888888888888888 33333333333333 1 111
lowQualScore : 3 4 3 6 11 1111111 3 3 333 333 7777777777 11 8 0 6 1 2 0 3 1 2 44444444444444444444444444444444444444 7 8888 3 99 55555555555555555555555555555 1 2 6 5 5 66 11 66 22 99 1 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 4 66666666666666666666666 5 5555 5 7777 1 2 8888888888 5555555555555 1 55555555555555555555 0 1 99999999999999999999999999999999999999999999999999999999999 55 3 222222222 55 4 4 4 0 66 9999 4 6666666666 4 3 00 888 2 5 66666666666666666666666666666666666666666666666666666666666666666666 66 5 5 4444 77 0000 66 66 777777777777777777777777777777 5 4 66 0 3 5 4 00000000000000000000000000000000000000000000000000 2 1 0 4 66666666666666 2 0 3 111 1
lowQualScore : . . . . .. ....... . . ... ... .......... .. . . . . . . . . . ...................................... . .... . .. ............................. . . . . . .. .. .. .. .. . . ................................................................................................... .. . ....................... . .... . .... . . .......... ............. . .................... . . ........................................................... .. . ......... .. . . . . .. .... . .......... . . .. ... . . .................................................................... .. . . .... .. .... .. .. .............................. . . .. . . . . .................................................. . . . . .............. . . . ... .
lowQualScore : 0 7 7 7 77 7777777 7 7 333 333 3333333333 22 0 6 6 0 5 0 2 0 5 22222222222222222222222222222222222222 0 0000 2 00 77777777777777777777777777777 8 5 7 7 0 99 55 99 44 66 0 8 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 4 22222222222222222222222 0 6666 0 8888 0 1 8888888888 4444444444444 0 00000000000000000000 4 4 99999999999999999999999999999999999999999999999999999999999 22 2 666666666 55 4 4 4 7 11 4444 4 6666666666 4 4 44 888 0 0 99999999999999999999999999999999999999999999999999999999999999999999 11 7 3 4444 99 0000 11 11 666666666666666666666666666666 9 4 99 2 9 0 2 00000000000000000000000000000000000000000000000000 2 0 8 2 22222222222222 2 0 2 555 0
consensus : ACAAGAGNACANCAANCGACGCAA--TATGCTTGTCTCGCGGTGAA---ATT---CAACCTGTAA---------GCACTTTTAGC-TTTAAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTTT-CTC-TGAG---ACGT--------GATTATTTCT-TAGAGGAAGGTTGTAATATAAATGT------CA-----ATAT-CTGTAT----CCATGA-TGA-GAA-AAAG--TCC-GGAAAAC--TA-TTTGAC--CTACTT----T-TA-G-CACTGAAATACAAAA-GTAGGTCACGGCGCACCAATCC------------AGCT-------G-A--A-----------TA---G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATC--C-T-AACGAGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATACAGC-GAAACGCGAACCGA---------A-------T--C-TCCGA-GAGGAAGG-TTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--C-GGGAAA-AAGT-C-G------GAAAACT-GTTTGACCTACTTTTAGCCC---TAAA-GT----AG-GT-CGCG-GC-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTA-TTCCTCCA-GA--GGAAG-CT--TGTG--ACTAAATTTCAGGG-C-A-TA-CCTGCATC-TG------T----AACGAAAA-AAAG--TCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATCA-A--TTG-CAATGCTGTACATG-CATCCGTTACGGAAANAA
Reference ( family-1222 ) : ACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA---ATT---CAACCTGTAA---------GCACTTTTAGC-CTTAAAGTAGGTCANGGTGCACCAATCCA-GCTGACNCGTTN-CTC-TGAA---ANGT----TGTAGATTATTTCTCCAGAGGAAGGTTGTGATATAAACGT------CA-----ATAT-NTGTAT----CCATAA-TGA-GAA-AAAG--TCC-GGGAAAC--TG-TTTGACA-CNACTT----T-TA-G-C-CTGAAATACAAAATGTAGGTCANGGTGCACCAATCC------------AGCT-------G-A--A-----------TA---G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGNGCAATATCTGTATC--C---AACGAGGAAAAGTCCNAGA------T-TGATCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAGCTGAAATGCGAACTGA---------A-------T--C-TCCGA-GAGGGAGG-CTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--C-GAGAAA-AAGT-C-G------GAAAACT-GTTTGACCTACTTTTAGCCC---TAAA-GT----AG-GT-CACG-GC-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTA-TTCCTNCATGA--GGGAA-CT--TGTG--ACTAAATTTCAGGG-T-A-TA-TCTGTATC-T-------T----AACGANAA-AAAG--TCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAAANATTGTAACCA-A--TT--CAGTACTGTATATG-CATCCATTATAAAAANAA
gi|1 : ACAAGAGGACCGCAAACGATGCA-----------TCGCACGGACAATTCATT---CAATCTGTAA---------GCACTGTTAGC-CTTAACGTAGGTCAAGGTGGACCAATCCA-GCTGACTTGTTTTCTC-TGAG---AGGTAGGTTGTAAATTATTTCTCTAGAGAAAGGTTGTAAAAGAAACGT------TA-----ATAT-ACGAAT----CCATGG-TGC-GAG-AAAG--TCC-ATGAAAC--TC-TTTGA-A-TAACTT----G-TA-GTC-CTAAAGTACAAAATGTAAGTTACGGTGGATCAATTT------------AGCT-------G-A--A-----------TA---G----TA--TTTCTCAAAGAGG-----------------------GAAG-T----TGTGAC-AAAATGTCAGAGCAATATCAGTATC--C---AACGAGGACAAGTCCCAG-------C-TGATTTACTTTT--------AG--TA-A--GTTATGGTGCATCAATGAAGCTGAAAGGCGAACTGA---------A-------T--C-TTCGA-GAAAGAGG-CTGTAAT-TACATTTCA-----TGGCAAT-ACCT-G-TA-TGCATAA--C-CAAAAA-AAAT-T-G------AAAAACT-GATTGACCTACTTTTAGCCC---TGAA-GT----AG-GT-CACG-GC-T-----ATCAATCCA--------GC--------A--GATTG---------AATCTGTA-TTCCTACATGA--GGGAA-CT--TGTG--ACTGATTTTCAAGG-T-A-TG-TCTGTATC-T-------T----AACAACAA-AAAG--TCCGCGAAACTGTTTGTCCCATTTTT-AGCCCTAAAGTAGGTCATGGTGCACCAATCCAGT-----T------G-AAA---------TTGC--------GC--------TGGGGGGGGGGGGGGTAATCA-A--TTACCAATGTTGTACATG-CATCTATTATGGAAAAAA
gi|10 : ---------GCACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTAGGCTGACAC--TT-CTCGTGAACTCACGT---------AT--TTTCT-TAGAGG-AGGTTGTAATAT-AATGTCCAGTGCA-----ATATCTTGTATATA-TCATGA-TGACGAA-AAAG--TCCAAGAAAAC--TATTTTGAAACCTACTTAAGCTGTA-A-CAATGAAATACAAAA
gi|11 : gtcaaattctaagccaaccaaaatACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTA-GCTGACACGTGAACTC--------ACGT---------ATT-TTTCTG-AGAGGGAGGTTGTGATATAA-TGT------CAGTGCAATAT-CTGTATATATCTATGA-TGA-GAA-AAAG--TCC-AAGAAAC--TA-TTTGAC--CTACTTAAGCTGTA-A-CAATGAAATACAAAAatcc
gi|12 : TGAA-CAAATTTCA-----GCAGAAT-ATATCG-TA-TCCAAAATTC-GAGAAA-AAGG-T-GTTTTAAGAAAGCTTATTTGGCCTCCTTT--GTCC---TAAA-GTCAGAAGCGT-CGCC-GTGT-----GCCAATTAA--------GC--------ACAAATTGCACAAATGGAATCTGTA-TT-TTA---GA--GGCAG-AT--TGTGTAACCACATTTCAGGG-
gi|13 : --------T-AAGGGAGAAATTGTAGTCATA--TTG-CAATGCTGTACATGACA-CCGTTA-AGAAAGAA
gi|14 : tT-------G-A--A-----------TA---GATTATACTTTTCTGTGAGAGG-----------------------GAGG-T----TATAAC-AAAATGTCTGTGCATTAGCTGTATC--T-------ATGAAAAGTCCAGGA------aattccaccagacatgacttcaattggagagccagc
gi|15 : tataaccgacgAA-TAAG--TCTGGAAAACAGTTCGACCTACTTTTCAGCCCTAAAGTAGGTCAAGGTGCACCAATCCAGC-----T------G-AAA---------Ta
gi|16 : ggggcatgataagttTCC------------AGCTAACATGTG-A--T-----------TAT--G----TA--TTTCTCTGAGTGT-----------------------GAGG-T----TGTGAC-AAAACGTCAGTGCAATATCTGTATC--CAT-AATGAGAAg
gi|17 : aggt-CT--TGTG--ACTAAATTTCAGG--------------ACC-G-------T----AACG-GAA-AAAG--TCCGG-AAACAGTTTGACTTA
gi|2 : atACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA---ATT---CAACCTGTAAGCACATTATGCACTTGTAGCTTTTAAAGAAGACCATGATGCACCAATCCA-GCTG-CACGT--------------ACGT--------GA--ACT------GAAGAAGGTTG-----TAAGTG-------CA-----ATA-------------------TGA-GAA-AAAG--TCA-GGG-AACTATA-TTTGAC--CTACAT----T-TAGG-T-CTAA----------GTAGATCACGGAACACCAATCCTACTGGAATGCAAACT-------GAA--A-----------TT---G----TA--TTTATCTGTGAGGAAACAATCCAGCTGAAATGCAAAGAAGCT----TGTAACTAAAA--TCAGGGCAATATCTGTATC--CGT-AAC--GGAAAAATC----G------T-TGATCTACTTTCAGTTCTAAAG--TA-G--GTCACGGTGCACCAATAGAG--GAA----GA----A---------A-------T--T-T-----------------TGAC-CAAATTTCAACTCTGTACATTCATTT-GACATTCCGTTA--C-AGAAAA-AAGTCC-A------GAAAAAT-GTTTGGTCTACTTCTATCTCGGACAGACGT-----G-GT------GC-------ACCAATCCT--------GCT-------A--AAgtgttctttgtcttc
gi|2 : ggaaaacagatgtaT-A-TA-TCCGTAA--C-GGGAAAGAAGT-CCG------GAAAACT-GTTTGACATACTTTTAGCatacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|3 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaaatacaaacttaaAT----CCGTAAAGGA-GAA-AATA--TC--GGAGAAC--TG-TTTGAC--CTACAT----T-TA-G-CACGGACGGACA--------GTCAA--------AAT------------------------------------------TT---G----TA--TTTGTCCAAGAGG------------------------AGG-TA---NCTGAT-ACA---CCAGG----TATCAGTATC--CGTAAAGGAGAAAAGATCGGAGAACTGT-T-TGACCTACATTT--------AG--CATG--G--ACGG---------ACAGTCAAAATTTGTATT-------------------T--G-TCCAA-GAGG-AGG-T----ACATAA--TTAA-----GGGTTAA-ATCC-G-TA-TTGATGT--C-GG---A-AAGT-CTG------GAAAACT-ATTATACCTACATCTAG------TA----T----GG-GCGCGCA-GA-TTTTACACCAATCCA--------GCTCAAATGTA--AACTG---------AAGTTGTA-TTCCTCCAAAA--GGAAG-CT--TGTG--ATTAA-TTGCAGGG-C-A-AAACCTACATC-CA------T----GACGA-AA-AAAG--TCCGAAAAA-TGCATGACCTACGTTT-AGCCCTATAGTACGTCAAGATACACCATTCCAGC-----T------G-ACA---------TTacggatggacag
gi|4 : G--TA-G--TTCACAATACACCAATCCAGCAGAAATACAAACCAA---------ACATATACT--CGTCCCA-GAGGAAGC-TTGTGGG-TAAATATCA-----GGGTAAA-ACCT-G-TG-TCCATAA--C-AAATAC-AGCT-C-G------GAGAACT-GTTTGATCTATATTTAGCGC------A-GT----TG-G---ATG-GA-TAC---ACCAATCCAGCTAAAATGC--------A--AACTC---------AACTCATA-CTTCTCC--GACCGAAAG-CT--TGTG--ACTAAATTCCAGGGAA-A-TA-TCTGCATG-TA------TTCAAAATGAAAA-TAAG--TTCAGAAAAC----TGACCTACGTTT-AGACGTAAAGTAGGTCACAGTGCACAAATCAAGCAACAAT------GCAAATTC------TTGC--------TCTTCTTAATT-AAGGGAAATATTGTAACCA-AATTT--CAGTGCTGTATATG-CATCCAATATAGAAACAAaattactcttactcttgttgatacgttacagaaaaaggtaagggaaacattatctcggacggacag
gi|5 : cat--TGTG--TTTAAATTTTAGGG-T--------TGTGTC-T-------C----TACCAGAATAAAG--TCTGGAAAACC--TTGACCTACTTTA-AGCCTAAAAGCAGGTCATTGTGCACCAATCCAGC-----TCACATGA-AAA---------TTGC--------ctttaagtccagaaaacataacctcggacagccag
gi|5 : A-GAATAAAG--TCT-GGAAAAC--C---TTGAC--CTACTT----T-AA-G-C-CTAAAA--------GCAGGTCATTGTGCACCAATCC------------AGCTCACAT--G-A--AAATTGCATGATTAT--G----TC--TTCCTCTGAA--------------------------GAGG-T----TGTGT------TGTCAGCGCAATATCTGTATCCGC---AATGAGAAAAAGTCCAGGAAAGTGTC-TGACATACTGTT--------AG--C------TCCCTGTACATC----------------------------------------T--C-TAAGA-G--GAAGG-TTGTGAT-TAA--------------------CCT-G-TA-TCTATAG--TGGGGAAA-AAAT-CTG------GAAAATT-GTTTGACCTACTTTTAGATA---TAAA-GT----AA-GT-CAAG-GTAT-----ACCAATGCA--------G--------------CTG---------AA-----A-TACTTTGA-GA--GGAAA-CTTGTGTG--ACTAAA---CAGGG-CAA-CA-TCTATATC-CG------T----AACAAAAA-atgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|6 : tgtgtttaaattttagggttgtgtctctaccAA-AAAG--TCT-GGAAAAT--TA-T---ACC-CCAAAT----T-TA-G------------------TAGGATATGATTCACCAATCC------------AGCT-------G-A--A--------------------------------AAGAGA-----------------------AAAA-T----TGTGAC-CAAAT-TCAGCACTGTACATGCATC--C---A-TTATAAAAAGTCC-AGA---------AATATGACGTC--------AGA-TG-GACGCTATGATGGATGAATGCA-------CACACACCGA---------T-------T--CCTCAGA-GAGAAAGC-TTGTGAC-TAAATTTCA-----GGATAAT-ATCT-T-TA-TCTGTAA--C-CA-AAA-ATGTCC-G------AAAAACT-GTTTGACCTACTTTTccaag
gi|7 : tTGACATACTTT-AGCCT---TAAA-AT----AA--T-C-CA-GC-T-----GA-AAT-----------GC--------A--AA------------AACTTGTA-TTTCTCC--GA--GGGGAGCT--TGTG--ATTAAATTTCAGGG-T-AATA-CATGTATC-TGAATCCGT----AACGAAAA-AAGG--TAAGGAAAACTGTTTGACATACTTTT-GGCCCAAAAGTAGGTCACGGTATACCCAACGAGC-----T------G-AAATACAAACTCTTACTAACGTTTAT--------T-AAAGGAGACATCGTGAGCA-T--TT--------TGTACATG-TATCCGTTGCGGAAAtttatattc
gi|8 : cacAGTCC------------AG---------G-A--A-----------CA---G----CA--TTTCTCCAGGAGG-----------------------GAGG-CATAATATGAC-AA--TGTCAATGCACTATCTG----------------AAAAAGTCCAGGAAAC---TATGACCTACTTTT--------AGCCT------TCAAGGTGCACCAATATGGCCGATTTGTGAAATGATCATGATGTA-------TTTC-TCCAATGGGGGAGAATTGTGAC-AAAATTTTA-----GTGCAAT-ATTT-G-TA-TCCATCA--T-AAGAAA-AAGTCC-A------GGAAACT-ATTTGAa
gi|9 : gtatctatgaaaTACTTTAAACCC---TAAA-GT----AG-GT-CATGAG-----------AAT-----------GC--------A--AACTG---------AATCTGCAATTATCTTATAA--GG-----T--TGCT--ACTCCATTTTCGGG-C-AGTA-CCTGCATCCT-------T----AACAAAAA-AAAAAATCAGGAAATTTGTTTGACCTACTTTT-AGCCCTGAAGTAAATCATGACACATCAATC
gi|9 : ------CA-----GTAC-CTGCAT----CCTTAA-CAA-AAA-AAAAAATCA-GGAAATT--TG-TTTGAC--CTACTT----T-TA-GCC-CTGAA---------GTAAATCATGACACATCAATCA------------TGCA-------A-ACTA-----------TACTTA----TA--TTCCTCTGAAAatgcaaactatacttatattcctctgaaattgtttaacctctataaacctacagtaggccatggtgcacc
gi|9 : tactttaaaccctaaagtaggtcatgagaatgcaaactgaatctgcaattatcttataaggttgctactccattttcgggACATCAATC-ATGCAAACTATACTTATATTCCTCTGAA---ATTGTTTAACCTCTA-----------------TAAA-CCTACAGTAGGCCATGGTGCACCttgtttaacctctataaacctacagtaggccatggtgcacc
gi|9 : tactttaaaccctaaagtaggtcatgagaatgcaaactgaatctgcaattatcttataaggttgctactccattttcgggcagtacctgcatccttaacaaaaaaaaaaatcaggaaatttgtttgacctacttttagccctgaagtaaatcatgacAAATTGTTTAACCT--CTAT-AAACCTACAGTAGGCCATGGTGCACC
Alignments
lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444 3333333 4444444444 1 00000000000000000000000000000000 11 1 555555555555555555555555555 4444444444444444444 11111 11111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 1111 3333333 4444444 5555555555555555555555555555555555555555555555555555555555555555555555 111111111 1111 2222222222 55555555555555555555555555555555555555555555555555555555555555555555 22222222 333333333333333 1111 88888888888888888888888888888888888888888888888888 111 22 1 1
lowQualScore : 1 1 1 6 0 4444444 3 44 7777777 7777777777 11 8 0 1 1 0 3 2 77777777777777777777777777777777 3 33 7 3 1 0 555555555555555555555555555 6 5 5 5 88 0 66 3 888 0 4444444444444444444 1 00000 77777 3 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 9999 5555 1 8 2 0 3333333 0 1 3333333 1 1111111111111111111111111111111111111111111111111111111111111111111111 4 77 0 999 55 3 222222222 55 4 4 4 0 66 1111 4 4 6666666666 4 3 00 0 00 11111111111111111111111111111111111111111111111111111111111111111111 66 22 11111111 66 66 777777777777777 2 88 0000 66 0 3 5 4 00000000000000000000000000000000000000000000000000 1 4 0 111 22 0 0 0 3 0 1
lowQualScore : . . . . . ....... . .. ....... .......... .. . . . . . . . ................................ . .. . . . . ........................... . . . . .. . .. . ... . ................... . ..... ..... . ...................................................................................... . .... .... . . . . ....... . . ....... . ...................................................................... . .. . ... .. . ......... .. . . . . .. .... . . .......... . . .. . .. .................................................................... .. .. ........ .. .. ............... . .. .... .. . . . . .................................................. . . . ... .. . . . . . .
lowQualScore : 0 0 0 7 7 7777777 7 33 7777777 3333333333 22 0 6 0 0 0 2 5 22222222222222222222222222222222 2 00 0 2 0 6 999999999999999999999999999 7 7 0 0 44 9 99 9 888 5 5555555555555555555 4 11111 44444 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 4444 0000 4 5 1 1 0000000 7 4 6666666 0 6666666666666666666666666666666666666666666666666666666666666666666666 0 99 1 666 22 2 666666666 55 4 4 4 7 11 7777 4 4 6666666666 4 4 44 1 22 55555555555555555555555555555555555555555555555555555555555555555555 11 11 66666666 11 11 222222222222222 2 00 6666 99 2 9 0 2 00000000000000000000000000000000000000000000000000 0 2 8 000 88 8 2 0 2 5 0
consensus : ACAAGAGNACANCAANCGACGCAA--TATGCTTGTCTCGCGGTGAA---A---TTCAACCTGTAA---------GCACTTTTAGC-TTTAAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTGAAGTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-A--AAATGTCAGCGCAATATCTGTATCC--AACGAGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-AA-GT-C-G------GAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCG-GN-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-CCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATTN-CAATGCTGTACATG-CATCCGTTACGGAAANAA
Reference ( family-1222 ) : ACAAGAGNACANCAANCGACGCAA--TATGCTTGTCTCGCGGTGAA---A---TTCAACCTGTAA---------GCACTTTTAGC-TTTAAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAATGT------CAATATC-TG----TAT---CCATGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTGAAATACAAA---A-GTAGGTCACGGCGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-A--AAATGTCAGCGCAATATCTGTATCC-TAACGAGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATACAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-AA-GT-C-G------GAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCG-GC-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-CCTGCATCTGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATTG-CAATGCTGTACATG-CATCCGTTACGGAAANAA
gi|1 : ACAAGAGGACCGCAAACGATGCA-----------TCGCACGGACAATTCA---TTCAATCTGTAA---------GCACTGTTAGC-CTTAACGTAGGTCAAGGTGGACCAATCCA-GCTGACTTGTT-TTCTC-TGAG---AGGTAGGTTGTAAATTATTTCTCTAGAGAAAGGTTGTAAAAGAAACGT------TAATATA-CG----AAT---CCATGG-TGC-GAG-A-AAGTCC-ATGAAAC--TCTTT---GAATAACTT----G-TAGTCCTAAAGTACAAA---ATGTAAGTTACGGTGGATCAATTT------------AGCT-------G-AA-----------TA-G----TA--TTTCTCAAAGAGG-----------------------GAAG-T----TGTGAC-A--AAATGTCAGAGCAATATCAGTATCC--AACGAGGACAAGTCCCAG-------C-TGATTTACTTTT--------AG--TA-A--GTTATGGTGCATCAATGAAG-CTGAAAGGCGAACTGA--A---------TC-TTCGA--GAAAGAG--GCTGTAAT-TACATTTCA-----TGGCAAT-ACCT-G-TA-TGCATAA--CCAA-AAA-AA-AT-T-G------AAAAACT-GATTGACCTACTTTTAGCCCTGAAGT----AG-GT-CACG-GC-T-----ATCAATCCA--------GC--------A--GATTG---------AATCTGTATTCCTA-CATGA--GGGAACT--TGTG--ACTGATTTTCAAGG-T-A-------TG-TCTGTATCT-T----AAC--AACAAAAAGTCCGCGAAACTGTTTGTCCCATTTTT-AGCCCTAAAGTAGGTCATGGTGCACCAATCCAGT-----T------G-AAA---------TTGC--------GC--------TGGGGGGGGGGGGGGTAATC-A-ATTACCAATGTTGTACATG-CATCTATTATGGAAAAAA
gi|10 : ---------GCACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTAGGCTGACAC--T-T-CTCGTGAACTCACGT---------AT--TTTCT-TAGAGG-AGGTTGTAATAT-AATGTCCAGTGCAATATCTTG----TATATATCATGA-TGACGAA-A-AAGTCCAAGAAAAC--TATTTTGAAACCTACTTAAGCTGTAACAATGAAATACAAA---A-AT
gi|11 : gtcaaattctaagccaaccaaaatACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTA-GCTGACACGTGAA-CTC--------ACGT---------ATT-TTTCT-GAGAGGGAGGTTGTGATAT-AATGTCAGTG-CAATATC-TGTATATAT---CTATGA-TGA-GAA-A-AAGTCC-AAGAAAC--TATTT---GACCTACTTAAGCTGTAACAATGAAATACAAA---A-cc
gi|12 : TGAA-CAAATTTCA-----GCAGAAT-ATATCG-TA-TCCAAAATTCGAG-AAA-AA-GG-T-GTTTTAAGAAAGCTTATTTGGCCTCCTTT--GTCCTAAAGTCAGAAGCGT-CGCC-GTGT-----GCCAATTAA--------GC--------ACAAATTGCACAAATGGAATCTGTAT---TT-TA-GA--GGCAGAT--TGTGTAACCACATTTCAGGG-
gi|13 : --------T-AAGGGAGAAATTGTAGTC-ATATTG-CAATGCTGTACATGACA-CCGTTA-AGAAAGAA
gi|14 : tT-------G-AA-----------TA-GATTATACTTTTCTGTGAGAGG-----------------------GAGG-T----TATAAC-A--AAATGTCTGTGCATTAGCTGTATCT---ATG---AAAAGTCCAGGAA-----aattccaccagacatgacttcaattggagagccagc
gi|15 : tataaccgacgAATAAGTCTGGAAAACAGTTCGACCTACTTTTCAGCCCTAAAGTAGGTCAAGGTGCACCAATCCAGC-----T------G-AAA---------T
gi|16 : ggggcatgataagttTCC------------AGCTAACATGTG-AT-----------TATG----TA--TTTCTCTGAGTGT-----------------------GAGG-T----TGTGAC-A--AAACGTCAGTGCAATATCTGTATCCATAATGAGAAg
gi|17 : aggtCT--TGTG--ACTAAATTTCAGG-------------A-CC-------GT----AAC--G-GAAAAAGTCCGG-AAACAGTTTGACTTA
gi|2 : atACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA---A---TTCAACCTGTAAGCACATTATGCACTTGTAGCTTTTAAAGAAGACCATGATGCACCAATCCA-GCTG-CACGT---------------ACGTG--------A--ACT------GAAGAAGGTTG-----TAAGTG-------CAAT---------------------A-TGA-GAA-A-AAGTCA-GG-GAACTATATTT---GACCTACAT----T-TAGGTCT---------A---A-GTAGATCACGGAACACCAATCCTACTGGAATGCAAACT-------GAAA-----------TT-G----TA--TTTATCTGTGAGGAAACAATCCAGCTGAAATGCAAAGAAGCT----TGTAACTA--AAA--TCAGGGCAATATCTGTATCCGTAACG-GAAAAA-TC-----G-----T-TGATCTACTTTCAGTTCTAAAG--TA-G--GTCACGGTGCACCAAT----------------------------------------A--GAGGAAGAAATTTTGAC-CAAATTTCAACTCTGTACATTCATTT-GACATTCCGTTA--CAGA-AAA-AA-GTCC-A------GAAAAAT-GTTTGGTCTACTTCTATCTCGGA--C----AG-A--CGTG-GTGC-----ACCAATCCT--------GCT-------A--AAgtgttctttgtcttc
gi|2 : ggaaaacagatgtaAATACAAAC-T------TAATAT---------AT---CCGTAA-CGG-GAA-AGAAGTCC-GGAAAAC--TGTTT---GACATACTT----T-TAGCACGGAatacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|2 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaT-A-TA-TCCGTAA--CGGG-AAAGAA-GT-CCG------GAAAACT-GTTTGACATACTTTTAGCtggacag
gi|3 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaaatacaaacttaaAT---CCGTAAAGGA-GAA-A-ATATC--GGAGAAC--TGTTT---GACCTACAT----T-TAGCACGGACGGACA-----------GTCA------A--AAT----------------------------------------TT-G----TA--TTTGTCCAAGAGG------------------------AGG-TANC-TGATAC-ACCAGGTATCAG-----TATCCGTA-----AAGGAGAAAAGATCGGAGAACTGT-T-TGACCTACATTT--------AG--CATG--G--ACGG---------ACAGTC-AAAATTTGTATT--------------TG-TCCAA--GAGGA-G--GT----ACATAA--TTAA-----GGGTTAA-ATCC-G-TA-TTGATGT--CGG----A-AA-GT-CTG------GAAAACT-ATTATACCTACATCTAG---TA---T----GG-GCGCGCA-GA-TTTTACACCAATCCA--------GCTCAAATGTA--AACTG---------AAGTTGTATTCCTC-CA-AAA-GGAAGCT--TGTG--ATTAA-TTGCAGGG-C-A-------AAACCTACATCCAT----GAC--GAAAAAA-GTCCGAAAAA-TGCATGACCTACGTTT-AGCCCTATAGTACGTCAAGATACACCATTCCAGC-----T------G-ACA---------TTacggatggacag
gi|4 : G--TA-G--TTCACAATACACCAATCCAG-CAGAAATACAAACCAA--ACATATAC--TCGTCCCA--GAGGAAG--CTTGTGGG-TAAATATCA-----GGGTAAA-ACCT-G-TG-TCCATAA--CAAA-TAC-AG-CT-C-G------GAGAACT-GTTTGATCTATATTTAGCGC---AGT----TG-G---ATG-GA-TAC---ACCAATCCAGCTAAAATGC--------A--AACTC---------AACTCATACTTCTC-C--GACCGAAAGCT--TGTG--ACTAAATTCCAGGGAA-A-------TA-TCTGCATGTATTCAAAAT--GAAAATAAGTTCAGAAAAC----TGACCTACGTTT-AGACGTAAAGTAGGTCACAGTGCACAAATCAAGCAACAAT------GCAAATTC------TTGC--------TCTTCTTAATT-AAGGGAAATATTGTAACCAA-ATTT-CAGTGCTGTATATG-CATCCAATATAGAAACAAaattactcttactcttgttgatacgttacagaaaaaggtaagggaaacattatctcggacggacag
gi|5 : cat--TGTG--TTTAAATTTTAGGG-T--------------TGTGTCTCT----ACC--AGAATAAAGTCTGGAAAACC--TTGACCTACTTTA-AGCCTAAAAGCAGGTCATTGTGCACCAATCCAGC-----TCACATGA-AAA---------TTGC--------ctttaagtccagaaaacataacctcggacagccag
gi|5 : A-GAATA-AAGTCT-GGAAAAC--C--TT---GACCTACTT----T-AAGC-CT-------AAA---A-GCAGGTCATTGTGCACCAATCC------------AGCTCACAT--G-AAAATTGCATGATTATG----TC--TTCCTCTGAA--------------------------GAGG-T----TGTGT--------TGTCAGCGCAATATCTGTATCCGCAATGAGAAAAAGTCCAGGAAAGTGTC-TGACATACTGTT-------------A-G--CTCCC--TGTAC---------------------------A---------TC-TCTAA--GAGGAAG--GTTGTGAT-TAA--------------------CCT-G-TA-TCTATAG--TGGGGAAA-AA-AT-CTG------GAAAATT-GTTTGACCTACTTTTAGATATAAAGT----AA-GT-CAAG-GTAT-----ACCAATGCA--------G--------------CTG---------AA-----ATACTTT-GA-GA--GGAAACTTGTGTG--ACTAAA---CAGGG-CAA-------CA-TCTATATCCGT----AAC--AAAAAatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|6 : tgtgtttaaattttagggttgtgtctctaccAA-A-AAGTCT-GGAAAAT--TAT------ACCC-----------------------CAAATTTA-GTAGGATATGATTCACCAATCC------------AGCT-------G-AA------------------------------AAGAGA-----------------------AAAA-T----TGTGAC-C--AAAT-TCAGCACTGTACATGCATCC---ATTATAAAAAGTCCAGAAA-----TATGACGT-----C--------AGA-TG-GACGCTATGATGGATGAATGCA--------CACACACCGA--T---------TCCTCAGA--GAGAAAG--CTTGTGAC-TAAATTTCA-----GGATAAT-ATCT-T-TA-TCTGTAA--C--C-AAA-AATGTCC-G------AAAAACT-GTTTGACCTACTTTTccaag
gi|7 : tTGACATACTTT-AGCCTTAAAAT----AA--T-C-CA-GC-T-----GA-AAT-----------GC--------A--AA------------AACTTGTATTTCTC-CG-AG--GGGAGCT--TGTG--ATTAAATTTCAGGG-T-AATACATGTA-TCTGAATCCGT----AAC--GAAAAAAGGTAAGGAAAACTGTTTGACATACTTTT-GGCCCAAAAGTAGGTCACGGTATACCCAACGAGC-----T------G-AAATACAAACTCTTACTAACGTTTAT--------T-AAAGGAGACATCGTGAGC-A-TTT--------TGTACATG-TATCCGTTGCGGAAAtttatattc
gi|8 : cacAGTCC------------AG---------G-AA-----------CA-G----CA--TTTCTCCAGGAGG-----------------------GAGG-CATAATATGAC-----AATGTCAATGCACTATCT-------------GAAAAAGTCCAGGAAAC---TATGACCTACTTTT--------AGCCT------TCAAGGTGCACCAATATGGCC-GATTTGTGAAATGATCATGATGTATTTC-TCCAATGGGGGAGA--ATTGTGAC-AAAATTTTA-----GTGCAAT-ATTT-G-TA-TCCATCA--TAAG-AAA-AA-GTCC-A------GGAAACT-ATTTGAa
gi|9 : gtatctatgaaaTACTTTAAACCCTAAAGT----AG-GT-CATGAG-----------AAT-----------GC--------A--AACTG---------AATCTGCAATTATCTTA------TAAGGT--TGCT--ACTCCATTTTCGGG-C-AG------TA-CCTGCATCCTT----AACAAAAAAAAAAATCAGGAAATTTGTTTGACCTACTTTT-AGCCCTGAAGTAAATCATGACACATCAATC
gi|9 : ACATCAATC-ATGCAAACTATACTTATATTCCTCTGAA---ATTGTTTAACCTCTA-----------------TAAA-CCTACAGTAGGCCATGGTGCACCatgcaaactatacttatattcctctgaaattgtttaacctctataaacctacagtaggccatggtgcacc
gi|9 : tactttaaaccctaaagtaggtcatgagaatgcaaactgaatctgcaattatcttataaggttgctactccattttcgggcagtacctgcatccttaacaaaaaaaaaaatcaggaaatttgtttgacctacttttagccctgaagtaaatcatgacAAATTGTTTAACCT--CTAT-AAACCTACAGTAGGCCATGGTGCACC
Alignments
lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444 3333333 4444444444 1 00000000000000000000000000000000 11 2222 66666666666666666666666666 444444444444444444 11111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 33333333 4444444 5555555555555555555555555555555555555555555555555555555555555555555555 111111111 1111111 2222222222 1111111111 44444444444444444444444444444444444444444444444444444 22222222 444444444444444 1111 88888888888888888888888888888888888888888888888888 111 22 1 1
lowQualScore : 1 1 1 6 0 4444444 3 44 7777777 7777777777 11 8 0 1 1 0 3 2 77777777777777777777777777777777 3 33 7 0000 1 88888888888888888888888888 2 6 5 5 5 88 0 66 3 888 0 333333333333333333 1 00000 88888 3 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5555 88 444 8 1 66666666 0 1 3333333 1 1111111111111111111111111111111111111111111111111111111111111111111111 4 77 0 999 55 3 222222222 55 5 5 5 2 7777777 5 7777777777 5 4 11 0 00 4444444444 4 44444444444444444444444444444444444444444444444444444 66 22 11111111 66 66 666666666666666 2 6 0000 66 0 3 5 4 00000000000000000000000000000000000000000000000000 1 4 0 111 00 0 0 0 3 0 1
lowQualScore : . . . . . ....... . .. ....... .......... .. . . . . . . . ................................ . .. . .... . .......................... . . . . . .. . .. . ... . .................. . ..... ..... . ...................................................................................... . .... .. ... . . ........ . . ....... . ...................................................................... . .. . ... .. . ......... .. . . . . ....... . .......... . . .. . .. .......... . ..................................................... .. .. ........ .. .. ............... . . .... .. . . . . .................................................. . . . ... .. . . . . . .
lowQualScore : 0 0 0 7 7 7777777 7 33 7777777 3333333333 22 0 6 0 0 0 2 5 22222222222222222222222222222222 2 00 0 8888 4 77777777777777777777777777 2 7 7 0 0 44 9 99 9 888 5 999999999999999999 4 11111 88888 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 6666 11 666 5 0 44444444 7 4 6666666 0 3333333333333333333333333333333333333333333333333333333333333333333333 0 99 1 666 22 2 666666666 55 0 0 0 0 8888888 0 4444444444 0 8 66 1 22 1111111111 2 44444444444444444444444444444444444444444444444444444 11 11 66666666 11 11 444444444444444 2 5 6666 99 2 9 0 2 00000000000000000000000000000000000000000000000000 0 2 8 000 88 8 2 0 2 5 0
consensus : ACAAGAGNACANCAANCGACGCAA--TATGCTTGTCTCGCGGTGAA---A---TTCAACCTGTAA---------GCACTTTTAGC-TTTAAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTGA-GTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGT-AACGAGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCATAA--CGGG-AAAAA-GTCC-G------GAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-TCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
Reference ( family-1222 ) : ACAAGAGNACANCAANCGACGCAA--TATGCTTGTCTCGCGGTGAA---A---TTCAACCTGTAA---------GCACTTTTAGC-TTTAAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTGAAGTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCC---AACGAGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAAAA-GT-C-G------GAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-CCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
gi|1 : ACAAGAGGACCGCAAACGATGCA-----------TCGCACGGACAATTCA---TTCAATCTGTAA---------GCACTGTTAGC-CTTAACGTAGGTCAAGGTGGACCAATCCA-GCTGACTTGTT-TTCTC-TGAG---AGGTAGGTTGTAAATTATTTCTCTAGAGAAAGGTTGTAAAAGAAACGTT------AATATA-CG----AAT---CCATGG-TGC-GAG-A-AAGTCC-ATGAAAC--TCTTT---GAATAACTT----G-TAGTCCTAAAGTACAAA---ATGTAAGTTACGGTGGATCAATTT------------AGCT-------G-AA-----------TA-G----TA--TTTCTCAAAGAGG-----------------------GAAG-T----TGTGAC-AAAATGTCAGAGCAATATCAGTATCC---AACGAGGACAAGTCCCAG-------C-TGATTTACTTTT--------AG--TA-A--GTTATGGTGCATCAATGAAG-CTGAAAGGCGAACTGA--A---------TC-TTCGA--GAAAGAG--GCTGTAAT-TACATTTCA-----TGGCAAT-ACCT-G-TA-TGCATAA--CCAA-AAAAA-AT-T-G------AAAAACT-GATTGACCTACTTTTAGCCCTGAAGT----AG-GT-CACGG-C-T-----ATCAATCCA--------GC--------A--GATTG---------AATCTGTATTCCTA-CATGA--GGGAACT--TGTG--ACTGATTTTCAAGG-T-A-------TG-TCTGTATCT-T----AAC--AACAAAAAGTCCGCGAAACTGTTTGTCCCATTTTT-AGCCCTAAAGTAGGTCATGGTGCACCAATCCAGT-----T------G-AAA---------TTGC--------GC--------TGGGGGGGGGGGGGGTAATC-A-ATTACCAATGTTGTACATG-CATCTATTATGGAAAAAA
gi|10 : ---------GCACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTAGGCTGACAC--T-T-CTCGTGAACTCACGT---------AT--TTTCT-TAGAGG-AGGTTGTAATAT-AATGTCCAGTGCAATATCTTG----TATATATCATGA-TGACGAA-A-AAGTCCAAGAAAAC--TATTTTGAAACCTACTTAAGCTGTAACAATGAAATACAAA---A-AT
gi|11 : gtcaaattctaagccaaccaaaatACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTA-GCTGACACGTGAA-CTC--------ACGT---------ATT-TTTCT-GAGAGGGAGGTTGTGATAT-AATGTCAGTG-CAATATC-TGTATATAT---CTATGA-TGA-GAA-A-AAGTCC-AAGAAAC--TATTT---GACCTACTTAAGCTGTAACAATGAAATACAAA---A-cc
gi|12 : TGAA-CAAATTTCA-----GCAGAAT-ATATCG-TA-TCCAAAATTCGAG-AAAAA-GG-T-GTTTTAAGAAAGCTTATTTGGCCTCCTTT--GTCCTAAAGTCAGAAGCGT-CGCCG-TGT-----GCCAATTAA--------GC--------ACAAATTGCACAAATGGAATCTGTAT---TT-TA-GA--GGCAGAT--TGTGTAACCACATTTCAGGG-
gi|13 : --------T-AAGGGAGAAATTGTAGTC-ATATT-GCAATGCTGTACATGACA-CCGTTA-AGAAAGAA
gi|14 : tT-------G-AA-----------TA-GATTATACTTTTCTGTGAGAGG-----------------------GAGG-T----TATAAC-AAAATGTCTGTGCATTAGCTGTATCT----ATG---AAAAGTCCAGGAA-----aattccaccagacatgacttcaattggagagccagc
gi|15 : tataaccgacgAATAAGTCTGGAAAACAGTTCGACCTACTTTTCAGCCCTAAAGTAGGTCAAGGTGCACCAATCCAGC-----T------G-AAA---------T
gi|16 : ggggcatgataagttTCC------------AGCTAACATGTG-AT-----------TATG----TA--TTTCTCTGAGTGT-----------------------GAGG-T----TGTGAC-AAAACGTCAGTGCAATATCTGTATCCAT-AATGAGAAg
gi|17 : aggtCT--TGTG--ACTAAATTTCAGGA---------------------CCGT----AAC--G-GAAAAAGTCCGG-AAACAGTTTGACTTA
gi|2 : atACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA---A---TTCAACCTGTAAGCACATTATGCACTTGTAGCTTTTAAAGAAGACCATGATGCACCAATCCA-GCTG-CACGT---------------ACGTG--------A--ACT------GAAGAAGGTTGTAA-------GTG-----CAAT---------------------A-TGA-GAA-A-AAGTCA-GG-GAACTATATTT---GACCTACAT----T-TAGGTCT---------A---A-GTAGATCACGGAACACCAATCCTACTGGAATGCAAACT-------GAAA-----------TT-G----TA--TTTATCTGTGAGGAAACAATCCAGCTGAAATGCAAAGAAGCT----TGTAACTAAAA--TCAGGGCAATATCTGTATCCGT-AACG-GAAAAA-TC-----G-----T-TGATCTACTTTCAGTTCTAAAG--TA-G--GTCACGGTGCACCAAT----------------------------------------A--GAGGAAGAAATTTTGAC-CAAATTTCAACTCTGTACATTCATTT-GACATTCCGTTA--CAGA-AAAAA-GTCC-A------GAAAAAT-GTTTGGTCTACTTCTATCTCGGA--C----AG-A--CGTGGTG-C-----ACCAATCCT--------GCT-------A--AAgtgttctttgtcttc
gi|2 : ggaaaacagatgtaAATACAAACTT-------AATAT---------AT---CCGTAA-CGG-GAA-AGAAGTCC-GGAAAAC--TGTTT---GACATACTT----T-TAGCACGGATGGACAatacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|3 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaAT---CCGTAAAGGA-GAA-A-ATATC--GGAGAAC--TGTTT---GACCTACAT----T-TAGCACGGACGGACA-----------GTCA------A--AAT----------------------------------------TT-G----TA--TTTGTCCAAGAGG------------------------AGG-TA---NCTGAT-ACA---CCAG----GTATCAGTATCCGTAAAGGAGAAAAGATCGGAGAACTGT-T-TGACCTACATTT--------AG--CATG--G--ACGG---------ACAGTC-AAAATTTGTATT--------------TG-TCCAA--GAGGA-G--GT----ACATAA--TTAA-----GGGTTAA-ATCC-G-TA-TTGATGT--CGG----AAA-GT-CTG------GAAAACT-ATTATACCTACATCTAG---TA---T----GG-GCGCGCAG-A-TTTTACACCAATCCA--------GCTCAAATGTA--AACTG---------AAGTTGTATTCCTC-CA-AAA-GGAAGCT--TGTG--ATTAA-TTGCAGGG-C-A-------AAACCTACATCCAT----GAC--GAAAAAA-GTCCGAAAAA-TGCATGACCTACGTTT-AGCCCTATAGTACGTCAAGATACACCATTCCAGC-----T------G-ACA---------TTg
gi|4 : G--TA-G--TTCACAATACACCAATCCAG-CAGAAATACAAACCAA--ACATATAC--TCGTCCCA--GAGGAAG--CTTGTGGG-TAAATATCA-----GGGTAAA-ACCT-G-TG-TCCATAA--CAAA-TACAG-CT-C-G------GAGAACT-GTTTGATCTATATTTAGCGC---AGT----TG-G---ATGG-A-TAC---ACCAATCCAGCTAAAATGC--------A--AACTC---------AACTCATACTTCTC-C--GACCGAAAGCT--TGTG--ACTAAATTCCAGGGAA-A-------TA-TCTGCATGTATTCAAAAT--GAAAATAAGTTCAGAAAAC----TGACCTACGTTT-AGACGTAAAGTAGGTCACAGTGCACAAATCAAGCAACAAT------GCAAATTC------TTGC--------TCTTCTTAATT-AAGGGAAATATTGTAACCAA-ATT-TCAGTGCTGTATATG-CATCCAATATAGAAACAAaattactcttactcttgttgatacgttacagaaaaaggtaagggaaacattatctcggacggacag
gi|5 : cat--TGTG--TTTAAATTTTAGGG-T--------------TGTGTCTCT----ACC--AGAATAAAGTCTGGAAAACC--TTGACCTACTTTA-AGCCTAAAAGCAGGTCATTGTGCACCAATCCAGC-----TCACATGA-AAA---------TTGC--------ctttaagtccagaaaacataacctcggacagccag
gi|5 : A-GAATA-AAGTCT-GGAAAAC--C--TT---GACCTACTT----T-AAGC-CT-------AAA---A-GCAGGTCATTGTGCACCAATCC------------AGCTCACAT--G-AAAATTGCATGATTATG----TC--TTCCTCTGAA--------------------------GAGG-T----TGTGT------TGTCAGCGCAATATCTGTATCCGC-AATGAGAAAAAGTCCAGGAAAGTGTC-TGACATACTGTT-------------A-G--CTCCC--TGTAC---------------------------A---------TC-TCTAA--GAGGAAG--GTTGTGAT-TAA--------------------CCT-G-TA-TCTATAG--TGGGGAAAAA-AT-CTG------GAAAATT-GTTTGACCTACTTTTAGATATAAAGT----AA-GT-CAAGGTA-T-----ACCAATGCA--------G--------------CTG---------AA-----ATACTTT-GA-GA--GGAAACTTGTGTG--ACTAAA---CAGGG-CAA-------CA-TCTATATCCGT----AAC--AAAAAatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|6 : tgtgtttaaattttagggttgtgtctctaccAA-A-AAGTCT-GGAAAAT--TAT------ACCC-----------------------CAAATTTA-GTAGGATATGATTCACCAATCC------------AGCT-------G-AA------------------------------AAGAGA-----------------------AAAA-T----TGTGAC-CAAAT-TCAGCACTGTACATGCATCC---A-TTATAAAAAGTCCAGAAA-----TATGACGT-----C--------AGA-TG-GACGCTATGATGGATGAATGCA--------CACACACCGA--T---------TCCTCAGA--GAGAAAG--CTTGTGAC-TAAATTTCA-----GGATAAT-ATCT-T-TA-TCTGTAA--C--C-AAAAATGTCC-G------AAAAACT-GTTTGACCTACTTTTccaag
gi|7 : tTGACATACTTT-AGCCTTAAAAT----A--AT-C-CAG-C-T-----G-AAAT-----------GC--------A--AA------------AACTTGTATTTCTC-CG-AG--GGGAGCT--TGTG--ATTAAATTTCAGGG-T-AATACATGTA-TCTGAATCCGT----AAC--GAAAAAAGGTAAGGAAAACTGTTTGACATACTTTT-GGCCCAAAAGTAGGTCACGGTATACCCAACGAGC-----T------G-AAATACAAACTCTTACTAACGTTTAT--------T-AAAGGAGACATCGTGAGC-A-TTT--------TGTACATG-TATCCGTTGCGGAAAtttatattc
gi|8 : cacAGTCC------------AG---------G-AA-----------CA-G----CA--TTTCTCCAGGAGG-----------------------GAGG-CATAATATGAC---AATGTCAATGCACTATCT--------------GAAAAAGTCCAGGAAAC---TATGACCTACTTTT--------AGCCT------TCAAGGTGCACCAATATGGCC-GATTTGTGAAATGATCATGATGTATTTC-TCCAATGGGGGAGA--ATTGTGAC-AAAATTTTA-----GTGCAAT-ATTT-G-TA-TCCATCA--TAAG-AAAAA-GTCC-A------GGAAACT-ATTTGAa
gi|9 : gtatctatgaaaTACTTTAAACCCTAAAGT----AG-GT-CATGA-G----------AAT-----------GC--------A--AACTG---------AATCTGCAATTATCTTA------TAAGGT--TGCT--ACTCCATTTTCGGG-C-AG------TA-CCTGCATCCTT----AACAAAAAAAAAAATCAGGAAATTTGTTTGACCTACTTTT-AGCCCTGAAGTAAATCATGACACATCAATC
gi|9 : ACATCAATC-ATGCAAACTATACTTATATTCCTCTGAA---ATTGTTTAACCTCTA-----------------TAAA-CCTACAGTAGGCCATGGTGCACCatgcaaactatacttatattcctctgaaattgtttaacctctataaacctacagtaggccatggtgcacc
gi|9 : tactttaaaccctaaagtaggtcatgagaatgcaaactgaatctgcaattatcttataaggttgctactccattttcgggcagtacctgcatccttaacaaaaaaaaaaatcaggaaatttgtttgacctacttttagccctgaagtaaatcatgacAAATTGTTTAACCT--CTAT-AAACCTACAGTAGGCCATGGTGCACC
Alignments
lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 66666666666 333 555555555 1 1 00000000000000000000000000000000 11 2222 66666666666666666666666666 55555555555555555555 11111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 22222222 4444444 5555555555555555555555555555555555555555555555555555555555555555555555 111111111 1111 11111 1111111111 44444444444444444444444444444444444444444444444444444 22222222 444444444444444 1111 88888888888888888888888888888888888888888888888888 111 22 1 1
lowQualScore : 1 44 1 55555555555 3 66 555 333333333 0 3 1 1 0 3 2 77777777777777777777777777777777 3 33 7 0000 1 88888888888888888888888888 2 6 5 5 5 88 0 66 3 888 0 99999999999999999999 1 00000 88888 3 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5555 88 444 8 1 33333333 0 1 3333333 1 1111111111111111111111111111111111111111111111111111111111111111111111 4 77 0 999 55 3 222222222 55 4 4 4 66 7777 4 777 4 11111 1 4 3 00 0 00 4444444444 4 44444444444444444444444444444444444444444444444444444 66 22 11111111 66 66 222222222222222 2 6 0000 66 0 3 5 4 00000000000000000000000000000000000000000000000000 1 4 0 111 00 0 0 0 3 0 1
lowQualScore : . .. . ........... . .. ... ......... . . . . . . . ................................ . .. . .... . .......................... . . . . . .. . .. . ... . .................... . ..... ..... . ...................................................................................... . .... .. ... . . ........ . . ....... . ...................................................................... . .. . ... .. . ......... .. . . . .. .... . ... . ..... . . . .. . .. .......... . ..................................................... .. .. ........ .. .. ............... . . .... .. . . . . .................................................. . . . ... .. . . . . . .
lowQualScore : 0 00 0 55555555555 0 55 000 333333333 0 0 0 0 0 2 5 22222222222222222222222222222222 2 00 0 8888 4 77777777777777777777777777 2 7 7 0 0 44 9 99 9 888 5 55555555555555555555 4 11111 88888 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 6666 11 666 5 0 66666666 7 4 6666666 0 3333333333333333333333333333333333333333333333333333333333333333333333 0 99 1 666 22 2 666666666 55 4 4 4 11 4444 4 888 4 11111 9 4 4 44 1 22 1111111111 2 44444444444444444444444444444444444444444444444444444 11 11 66666666 11 11 999999999999999 2 5 6666 99 2 9 0 2 00000000000000000000000000000000000000000000000000 0 2 8 000 88 8 2 0 2 5 0
consensus : ACAAGAGNACCGCAAGCGACGCAACATATGCTTGTCNCGCGGNNAATTCATTCAACCTGTAA---------GCACTTTTAGC-TTTNAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTG-A-GTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAACG-AGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-TCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
Reference ( family-1222 ) : ACAAGAGNACANCAANCGACGCAA--TATGCTTGTCTCGCGGTGAA---ATTCAACCTGTAA---------GCACTTTTAGC-TTTAAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTG-A-GTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAACG-AGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCATAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-TCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
gi|1 : ACAAGAGGACCGCAAACGATGCA-----------TCGCACGGACAATTCATTCAATCTGTAA---------GCACTGTTAGC-CTTAACGTAGGTCAAGGTGGACCAATCCA-GCTGACTTGTT-TTCTC-TGAG---AGGTAGGTTGTAAATTATTTCTCTAGAGAAAGGTTGTAAAAGAAACGTT------AATATA-CG----AAT---CCATGG-TGC-GAG-A-AAGTCC-ATGAAAC--TCTTT---GAATAACTT----G-TAGTCCTA-AAGTACAAA---ATGTAAGTTACGGTGGATCAATTT------------AGCT-------G-AA-----------TA-G----TA--TTTCTCAAAGAGG-----------------------GAAG-T----TGTGAC-AAAATGTCAGAGCAATATCAGTATCC--AACG-AGGACAAGTCCCAG-------C-TGATTTACTTTT--------AG--TA-A--GTTATGGTGCATCAATGAAG-CTGAAAGGCGAACTGA--A---------TC-TTCGA--GAAAGAG--GCTGTAAT-TACATTTCA-----TGGCAAT-ACCT-G-TA-TGCATAA--CCAA-AAA-A---A-A-----TT-GAAAAACT-GATTGACCTACTTTTAGCCCTGAAGT----AG-GT-CACGG-C-T-----ATCAATCCA--------GC--------A--GATTG---------AATCTGTATTCCTA-CATGA--GGGAACT--TGTG--ACTGATTTTCAAGG-T-A-------TG-TCTGTATCT-T----AAC--AACAAAAAGTCCGCGAAACTGTTTGTCCCATTTTT-AGCCCTAAAGTAGGTCATGGTGCACCAATCCAGT-----T------G-AAA---------TTGC--------GC--------TGGGGGGGGGGGGGGTAATC-A-ATTACCAATGTTGTACATG-CATCTATTATGGAAAAAA
gi|10 : ---------GCACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTAGGCTGACAC--T-T-CTCGTGAACTCACGT---------AT--TTTCT-TAGAGG-AGGTTGTAATAT-AATGTCCAGTGCAATATCTTG----TATATATCATGA-TGACGAA-A-AAGTCCAAGAAAAC--TATTTTGAAACCTACTTAAGCTGTAACAATGAA-ATACAAA---A-AT
gi|11 : gtcaaattctaagccaaccaaaatACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTA-GCTGACACGTGAA-CTC--------ACGT---------ATT-TTTCT-GAGAGGGAGGTTGTGATAT-AATGTCAGTG-CAATATC-TGTATATAT---CTATGA-TGA-GAA-A-AAGTCC-AAGAAAC--TATTT---GACCTACTTAAGCTGTAACAATGAA-ATACAAA---A-cc
gi|12 : TGAA-CAAATTTCA-----GCAGAAT-ATATCG-TA-TCCAAAATTCGAG-AAA-A---A-GGTGTTTTAAGAAAGCTTATTTGGCCTCCTTT--GTCCTAAAGTCAGAAGCGT-CGCCG-TGT-----GCCAATTAA--------GC--------ACAAATTGCACAAATGGAATCTGTAT---TT-TA-GA--GGCAGAT--TGTGTAACCACATTTCAGGG-
gi|13 : --------T-AAGGGAGAAATTGTAGTC-ATATT-GCAATGCTGTACATGACA-CCGTTA-AGAAAGAA
gi|14 : tT-------G-AA-----------TA-GATTATACTTTTCTGTGAGAGG-----------------------GAGG-T----TATAAC-AAAATGTCTGTGCATTAGCTGTATCTAT-------GAAAAGTCCAGGAA-----aattccaccagacatgacttcaattggagagccagc
gi|15 : tataaccgacgAATAAGTCTGGAAAACAGTTCGACCTACTTTTCAGCCCTAAAGTAGGTCAAGGTGCACCAATCCAGC-----T------G-AAA---------T
gi|16 : ggggcatgataagttTCC------------AGCTAACATGTG-AT-----------TATG----TA--TTTCTCTGAGTGT-----------------------GAGG-T----TGTGAC-AAAACGTCAGTGCAATATCTGTATCCATAATG-AGAAg
gi|17 : aggtCT--TGTG--ACTAAATTTCAGGA---------------------CCGT----AAC--G-GAAAAAGTCCGG-AAACAGTTTGACTTA
gi|2 : atACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA---ATTCAACCTGTAAGCACATTATGCACTTGTAGCTTTTAAAGAAGACCATGATGCACCAATCCA-GCTG-CACGT---------------ACGTG--------A--ACT------GAAGAAGGTTGTAA-------GTG-----CAAT---------------------A-TGA-GAA-A-AAGTCA-GG-GAACTATATTT---GACCTACAT----T-TAGGTCT----------A---A-GTAGATCACGGAACACCAATCCTACTGGAATGCAAACT-------GAAA-----------TT-G----TA--TTTATCTGTGAGGAAACAATCCAGCTGAAATGCAAAGAAGCT----TGTAACTAAAA--TCAGGGCAATATCTGTATCCGTAACG--GAAAAA-TC-----G-----T-TGATCTACTTTCAGTTCTAAAG--TA-G--GTCACGGTGCACCAAT----------------------------------------A--GAGGAAGAAATTTTGAC-CAAATTTCAACTCTGTACATTCATTT-GACATTCCGTTA--CAGA-AAA-A---A-G-----TCCAGAAAAAT-GTTTGGTCTACTTCTATCTCGGA--C----AG-A--CGTGGTG-C-----ACCAATCCT--------GCT-------A--AAgtgttctttgtcttc
gi|2 : ggaaaacagatgtaAATACAAACTT-------AATAT---------AT---CCGTAA-CGG-GAA-AGAAGTCC-GGAAAAC--TGTTT---GACATACTT----T-TAGCACGG-A-atacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|2 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaT-A-TA-TCCGTAA--CGGG-AAAGA---A-G-----TCCGGAAAACT-GTTTGACATACTTTTAGCtggacag
gi|3 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaaatacaaacttaaAT---CCGTAAAGGA-GAA-A-ATATC--GGAGAAC--TGTTT---GACCTACAT----T-TAGCACGG-ACGGACA-----------GTCA------A--AAT----------------------------------------TT-G----TA--TTTGTCCAAGAGG------------------------AGG-TA---NCTGAT-ACA---CCAG----GTATCAGTATCCGTAAAGGAGAAAAGATCGGAGAACTGT-T-TGACCTACATTT--------AG--CATG--G--ACGG---------ACAGTC-AAAATTTGTATT--------------TG-TCCAA--GAGGA-G--GT----ACATAA--TTAA-----GGGTTAA-ATCC-G-TA-TTGATGT--CGG----A-A---A-G-----TCTGGAAAACT-ATTATACCTACATCTAG---TA---T----GG-GCGCGCAG-A-TTTTACACCAATCCA--------GCTCAAATGTA--AACTG---------AAGTTGTATTCCTC-CA-AAA-GGAAGCT--TGTG--ATTAA-TTGCAGGG-C-A-------AAACCTACATCCAT----GAC--GAAAAAA-GTCCGAAAAA-TGCATGACCTACGTTT-AGCCCTATAGTACGTCAAGATACACCATTCCAGC-----T------G-ACA---------TTacggatggacag
gi|4 : G--TA-G--TTCACAATACACCAATCCAG-CAGAAATACAAACCAA--ACATATAC--TCGTCCCA--GAGGAAG--CTTGTGGG-TAAATATCA-----GGGTAAA-ACCT-G-TG-TCCATAA--C-----AA-ATACA-G-----CTCGGAGAACT-GTTTGATCTATATTTAGCGC---AGT----TG-G---ATGG-A-TAC---ACCAATCCAGCTAAAATGC--------A--AACTC---------AACTCATACTTCTC-C--GACCGAAAGCT--TGTG--ACTAAATTCCAGGGAA-A-------TA-TCTGCATGTATTCAAAAT--GAAAATAAGTTCAGAAAAC----TGACCTACGTTT-AGACGTAAAGTAGGTCACAGTGCACAAATCAAGCAACAAT------GCAAATTC------TTGC--------TCTTCTTAATT-AAGGGAAATATTGTAACCAA-ATT-TCAGTGCTGTATATG-CATCCAATATAGAAACAAaattactcttactcttgttgatacgttacagaaaaaggtaagggaaacattatctcggacggacag
gi|5 : cat--TGTG--TTTAAATTTTAGGG-T--------------TGTGTCTCT----ACC--AGAATAAAGTCTGGAAAACC--TTGACCTACTTTA-AGCCTAAAAGCAGGTCATTGTGCACCAATCCAGC-----TCACATGA-AAA---------TTGC--------ctttaagtccagaaaacataacctcggacagccag
gi|5 : A-GAATA-AAGTCT-GGAAAAC--C--TT---GACCTACTT----T-AAGC-CT--------AAA---A-GCAGGTCATTGTGCACCAATCC------------AGCTCACAT--G-AAAATTGCATGATTATG----TC--TTCCTCTGAA--------------------------GAGG-T----TGTGT------TGTCAGCGCAATATCTGTATCCGCAATG-AGAAAAAGTCCAGGAAAGTGTC-TGACATACTGTT-------------A-G--CTCCC--TGTAC---------------------------A---------TC-TCTAA--GAGGAAG--GTTGTGAT-TAA--------------------CCT-G-TA-TCTATAG--TGGGGAAA-A---A-A-----TCTGGAAAATT-GTTTGACCTACTTTTAGATATAAAGT----AA-GT-CAAGGTA-T-----ACCAATGCA--------G--------------CTG---------AA-----ATACTTT-GA-GA--GGAAACTTGTGTG--ACTAAA---CAGGG-CAA-------CA-TCTATATCCGT----AAC--AAAAAatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|6 : tgtgtttaaattttagggttgtgtctctaccAA-A-AAGTCT-GGAAAAT--TAT------ACCC------------------------CAAATTTA-GTAGGATATGATTCACCAATCC------------AGCT-------G-AA------------------------------AAGAGA-----------------------AAAA-T----TGTGAC-CAAAT-TCAGCACTGTACATGCATCCATTAT----AAAAAGTCCAGAAA-----TATGACGT-----C--------AGA-TG-GACGCTATGATGGATGAATGCA--------CACACACCGA--T---------TCCTCAGA--GAGAAAG--CTTGTGAC-TAAATTTCA-----GGATAAT-ATCT-T-TA-TCTGTAA--C--C-AAA-A---ATG-----TCCGAAAAACT-GTTTGACCTACTTTTccaag
gi|7 : tTGACATACTTT-AGCCTTAAAAT----A--AT-C-CAG-C-T-----G-AAAT-----------GC--------A--AA------------AACTTGTATTTCTC-CG-AG--GGGAGCT--TGTG--ATTAAATTTCAGGG-T-AATACATGTA-TCTGAATCCGT----AAC--GAAAAAAGGTAAGGAAAACTGTTTGACATACTTTT-GGCCCAAAAGTAGGTCACGGTATACCCAACGAGC-----T------G-AAATACAAACTCTTACTAACGTTTAT--------T-AAAGGAGACATCGTGAGC-A-TTT--------TGTACATG-TATCCGTTGCGGAAAtttatattc
gi|8 : cacAGTCC------------AG---------G-AA-----------CA-G----CA--TTTCTCCAGGAGG-----------------------GAGG-CATAATATGAC---AATGTCAATGCACTATCT--------------GAAAAAGTCCAGGAAAC---TATGACCTACTTTT--------AGCCT------TCAAGGTGCACCAATATGGCC-GATTTGTGAAATGATCATGATGTATTTC-TCCAATGGGGGAGA--ATTGTGAC-AAAATTTTA-----GTGCAAT-ATTT-G-TA-TCCATCA--TAAG-AAA-A---A-G-----TCCAGGAAACT-ATTTGAa
gi|9 : gtatctatgaaaTACTTTAAACCCTAAAGT----AG-GT-CATGA-G----------AAT-----------GC--------A--AACTG---------AATCTGCAATTATCTTA------TAAGGT--TGCT--ACTCCATTTTCGGG-C-AG------TA-CCTGCATCCTT----AACAAAAAAAAAAATCAGGAAATTTGTTTGACCTACTTTT-AGCCCTGAAGTAAATCATGACACATCAATC
gi|9 : AAATTGTTTAACCT--CTAT-AAACCTACAGTAGGCCATGGTGCACCatgcaaactatacttatattcctctgaaattgtttaacctctataaacctacagtaggccatggtgcacc
Alignments
lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444 22222 555555555 1 1 00000000000000000000000000000000 11 2222 66666666666666666666666666 55555555555555555555 11111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 22222222 4444444 5555555555555555555555555555555555555555555555555555555555555555555555 111111111 1111 11111 1111111111 44444444444444444444444444444444444444444444444444444 22222222 444444444444444 1111 88888888888888888888888888888888888888888888888888 111 22 1 1
lowQualScore : 1 2 33333333333 1 22 33333 333333333 0 1 1 1 0 3 2 77777777777777777777777777777777 3 33 7 0000 1 88888888888888888888888888 2 6 5 5 5 88 0 66 3 888 0 99999999999999999999 1 00000 88888 3 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5555 88 444 8 1 33333333 0 1 3333333 1 1111111111111111111111111111111111111111111111111111111111111111111111 4 77 0 999 55 3 222222222 55 4 4 4 0 66 7777 4 777 4 11111 1 4 3 00 0 00 4444444444 4 44444444444444444444444444444444444444444444444444444 66 22 11111111 66 66 222222222222222 2 6 0000 66 0 3 5 4 00000000000000000000000000000000000000000000000000 1 4 0 111 00 0 0 0 3 0 1
lowQualScore : . . ........... . .. ..... ......... . . . . . . . ................................ . .. . .... . .......................... . . . . . .. . .. . ... . .................... . ..... ..... . ...................................................................................... . .... .. ... . . ........ . . ....... . ...................................................................... . .. . ... .. . ......... .. . . . . .. .... . ... . ..... . . . .. . .. .......... . ..................................................... .. .. ........ .. .. ............... . . .... .. . . . . .................................................. . . . ... .. . . . . . .
lowQualScore : 0 5 55555555555 0 00 00000 333333333 0 0 0 0 0 2 5 22222222222222222222222222222222 2 00 0 8888 4 77777777777777777777777777 2 7 7 0 0 44 9 99 9 888 5 55555555555555555555 4 11111 88888 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 6666 11 666 5 0 66666666 7 4 6666666 0 3333333333333333333333333333333333333333333333333333333333333333333333 0 99 1 666 22 2 666666666 55 4 4 4 7 11 4444 4 888 4 11111 9 4 4 44 1 22 1111111111 2 44444444444444444444444444444444444444444444444444444 11 11 66666666 11 11 999999999999999 2 5 6666 99 2 9 0 2 00000000000000000000000000000000000000000000000000 0 2 8 000 88 8 2 0 2 5 0
consensus : ACAAGAGNACCGCAAGCGACGCAACATATGCTTGTCNCGCGGNNAATTC--ATTCAACCTGTAA---------GCACTTTTAGC-TTTNAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTG-A-GTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAACG-AGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-TCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
Reference ( family-1222 ) : ACAAGAGNACCGCAAGCGACGCAACATATGCTTGTCNCGCGGNNAATTC--ATTCAACCTGTAA---------GCACTTTTAGC-TTTNAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTG-A-GTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAACG-AGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-TCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
gi|1 : ACAAGAGGACCGCAAACGATGCA-----------TCGCACGGACAATTC--ATTCAATCTGTAA---------GCACTGTTAGC-CTTAACGTAGGTCAAGGTGGACCAATCCA-GCTGACTTGTT-TTCTC-TGAG---AGGTAGGTTGTAAATTATTTCTCTAGAGAAAGGTTGTAAAAGAAACGTT------AATATA-CG----AAT---CCATGG-TGC-GAG-A-AAGTCC-ATGAAAC--TCTTT---GAATAACTT----G-TAGTCCTA-AAGTACAAA---ATGTAAGTTACGGTGGATCAATTT------------AGCT-------G-AA-----------TA-G----TA--TTTCTCAAAGAGG-----------------------GAAG-T----TGTGAC-AAAATGTCAGAGCAATATCAGTATCC--AACG-AGGACAAGTCCCAG-------C-TGATTTACTTTT--------AG--TA-A--GTTATGGTGCATCAATGAAG-CTGAAAGGCGAACTGA--A---------TC-TTCGA--GAAAGAG--GCTGTAAT-TACATTTCA-----TGGCAAT-ACCT-G-TA-TGCATAA--CCAA-AAA-A---A-A-----TT-GAAAAACT-GATTGACCTACTTTTAGCCCTGAAGT----AG-GT-CACGG-C-T-----ATCAATCCA--------GC--------A--GATTG---------AATCTGTATTCCTA-CATGA--GGGAACT--TGTG--ACTGATTTTCAAGG-T-A-------TG-TCTGTATCT-T----AAC--AACAAAAAGTCCGCGAAACTGTTTGTCCCATTTTT-AGCCCTAAAGTAGGTCATGGTGCACCAATCCAGT-----T------G-AAA---------TTGC--------GC--------TGGGGGGGGGGGGGGTAATC-A-ATTACCAATGTTGTACATG-CATCTATTATGGAAAAAA
gi|10 : AATTCTAAGCCAACCAAAAT---------GCACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTAGGCTGACAC--T-T-CTCGTGAACTCACGT---------AT--TTTCT-TAGAGG-AGGTTGTAATAT-AATGTCCAGTGCAATATCTTG----TATATATCATGA-TGACGAA-A-AAGTCCAAGAAAAC--TATTTTGAAACCTACTTAAGCTGTAACAATGAA-ATACAAA---A-AT
gi|11 : gtcaACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTA-GCTGACACGTGAA-CTC--------ACGT---------ATT-TTTCT-GAGAGGGAGGTTGTGATAT-AATGTCAGTG-CAATATC-TGTATATAT---CTATGA-TGA-GAA-A-AAGTCC-AAGAAAC--TATTT---GACCTACTTAAGCTGTAACAATGAA-ATACAAA---A-cc
gi|12 : TGAA-CAAATTTCA-----GCAGAAT-ATATCG-TA-TCCAAAATTCGAG-AAA-A---A-GGTGTTTTAAGAAAGCTTATTTGGCCTCCTTT--GTCCTAAAGTCAGAAGCGT-CGCCG-TGT-----GCCAATTAA--------GC--------ACAAATTGCACAAATGGAATCTGTAT---TT-TA-GA--GGCAGAT--TGTGTAACCACATTTCAGGG-
gi|13 : --------T-AAGGGAGAAATTGTAGTC-ATATT-GCAATGCTGTACATGACA-CCGTTA-AGAAAGAA
gi|14 : tT-------G-AA-----------TA-GATTATACTTTTCTGTGAGAGG-----------------------GAGG-T----TATAAC-AAAATGTCTGTGCATTAGCTGTATCTAT-------GAAAAGTCCAGGAA-----aattccaccagacatgacttcaattggagagccagc
gi|15 : tataaccgacgAATAAGTCTGGAAAACAGTTCGACCTACTTTTCAGCCCTAAAGTAGGTCAAGGTGCACCAATCCAGC-----T------G-AAA---------T
gi|16 : ggggcatgataagttTCC------------AGCTAACATGTG-AT-----------TATG----TA--TTTCTCTGAGTGT-----------------------GAGG-T----TGTGAC-AAAACGTCAGTGCAATATCTGTATCCATAATG-AGAAg
gi|17 : aggtCT--TGTG--ACTAAATTTCAGGA---------------------CCGT----AAC--G-GAAAAAGTCCGG-AAACAGTTTGACTTA
gi|2 : atACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA-----ATTCAACCTGTAAGCACATTATGCACTTGTAGCTTTTAAAGAAGACCATGATGCACCAATCCA-GCTG-CACGT---------------ACGTG--------A--ACT------GAAGAAGGTTGTAA-------GTG-----CAAT---------------------A-TGA-GAA-A-AAGTCA-GG-GAACTATATTT---GACCTACAT----T-TAGGTCT----------A---A-GTAGATCACGGAACACCAATCCTACTGGAATGCAAACT-------GAAA-----------TT-G----TA--TTTATCTGTGAGGAAACAATCCAGCTGAAATGCAAAGAAGCT----TGTAACTAAAA--TCAGGGCAATATCTGTATCCGTAACG--GAAAAA-TC-----G-----T-TGATCTACTTTCAGTTCTAAAG--TA-G--GTCACGGTGCACCAAT----------------------------------------A--GAGGAAGAAATTTTGAC-CAAATTTCAACTCTGTACATTCATTT-GACATTCCGTTA--CAGA-AAA-A---A-G-----TCCAGAAAAAT-GTTTGGTCTACTTCTATCTCGGA--C----AG-A--CGTGGTG-C-----ACCAATCCT--------GCT-------A--AAgtgttctttgtcttc
gi|2 : ggaaaacagatgtaAATACAAACTT-------AATAT---------AT---CCGTAA-CGG-GAA-AGAAGTCC-GGAAAAC--TGTTT---GACATACTT----T-TAGCACGG-A-atacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|2 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaT-A-TA-TCCGTAA--CGGG-AAAGA---A-G-----TCCGGAAAACT-GTTTGACATACTTTTAGCtggacag
gi|3 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaaatacaaacttaaAT---CCGTAAAGGA-GAA-A-ATATC--GGAGAAC--TGTTT---GACCTACAT----T-TAGCACGG-ACGGACA-----------GTCA------A--AAT----------------------------------------TT-G----TA--TTTGTCCAAGAGG------------------------AGG-TA---NCTGAT-ACA---CCAG----GTATCAGTATCCGTAAAGGAGAAAAGATCGGAGAACTGT-T-TGACCTACATTT--------AG--CATG--G--ACGG---------ACAGTC-AAAATTTGTATT--------------TG-TCCAA--GAGGA-G--GT----ACATAA--TTAA-----GGGTTAA-ATCC-G-TA-TTGATGT--CGG----A-A---A-G-----TCTGGAAAACT-ATTATACCTACATCTAG---TA---T----GG-GCGCGCAG-A-TTTTACACCAATCCA--------GCTCAAATGTA--AACTG---------AAGTTGTATTCCTC-CA-AAA-GGAAGCT--TGTG--ATTAA-TTGCAGGG-C-A-------AAACCTACATCCAT----GAC--GAAAAAA-GTCCGAAAAA-TGCATGACCTACGTTT-AGCCCTATAGTACGTCAAGATACACCATTCCAGC-----T------G-ACA---------TTacggatggacag
gi|4 : G--TA-G--TTCACAATACACCAATCCAG-CAGAAATACAAACCAA--ACATATAC--TCGTCCCA--GAGGAAG--CTTGTGGG-TAAATATCA-----GGGTAAA-ACCT-G-TG-TCCATAA--C-----AA-ATACA-G-----CTCGGAGAACT-GTTTGATCTATATTTAGCGC---AGT----TG-G---ATGG-A-TAC---ACCAATCCAGCTAAAATGC--------A--AACTC---------AACTCATACTTCTC-C--GACCGAAAGCT--TGTG--ACTAAATTCCAGGGAA-A-------TA-TCTGCATGTATTCAAAAT--GAAAATAAGTTCAGAAAAC----TGACCTACGTTT-AGACGTAAAGTAGGTCACAGTGCACAAATCAAGCAACAAT------GCAAATTC------TTGC--------TCTTCTTAATT-AAGGGAAATATTGTAACCAA-ATT-TCAGTGCTGTATATG-CATCCAATATAGAAACAAaattactcttactcttgttgatacgttacagaaaaaggtaagggaaacattatctcggacggacag
gi|5 : cat--TGTG--TTTAAATTTTAGGG-T--------------TGTGTCTCT----ACC--AGAATAAAGTCTGGAAAACC--TTGACCTACTTTA-AGCCTAAAAGCAGGTCATTGTGCACCAATCCAGC-----TCACATGA-AAA---------TTGC--------ctttaagtccagaaaacataacctcggacagccag
gi|5 : A-GAATA-AAGTCT-GGAAAAC--C--TT---GACCTACTT----T-AAGC-CT--------AAA---A-GCAGGTCATTGTGCACCAATCC------------AGCTCACAT--G-AAAATTGCATGATTATG----TC--TTCCTCTGAA--------------------------GAGG-T----TGTGT------TGTCAGCGCAATATCTGTATCCGCAATG-AGAAAAAGTCCAGGAAAGTGTC-TGACATACTGTT-------------A-G--CTCCC--TGTAC---------------------------A---------TC-TCTAA--GAGGAAG--GTTGTGAT-TAA--------------------CCT-G-TA-TCTATAG--TGGGGAAA-A---A-A-----TCTGGAAAATT-GTTTGACCTACTTTTAGATATAAAGT----AA-GT-CAAGGTA-T-----ACCAATGCA--------G--------------CTG---------AA-----ATACTTT-GA-GA--GGAAACTTGTGTG--ACTAAA---CAGGG-CAA-------CA-TCTATATCCGT----AAC--AAAAAatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|6 : tgtgtttaaattttagggttgtgtctctaccAA-A-AAGTCT-GGAAAAT--TAT------ACCC------------------------CAAATTTA-GTAGGATATGATTCACCAATCC------------AGCT-------G-AA------------------------------AAGAGA-----------------------AAAA-T----TGTGAC-CAAAT-TCAGCACTGTACATGCATCCATTAT----AAAAAGTCCAGAAA-----TATGACGT-----C--------AGA-TG-GACGCTATGATGGATGAATGCA--------CACACACCGA--T---------TCCTCAGA--GAGAAAG--CTTGTGAC-TAAATTTCA-----GGATAAT-ATCT-T-TA-TCTGTAA--C--C-AAA-A---ATG-----TCCGAAAAACT-GTTTGACCTACTTTTccaag
gi|7 : tTGACATACTTT-AGCCTTAAAAT----A--AT-C-CAG-C-T-----G-AAAT-----------GC--------A--AA------------AACTTGTATTTCTC-CG-AG--GGGAGCT--TGTG--ATTAAATTTCAGGG-T-AATACATGTA-TCTGAATCCGT----AAC--GAAAAAAGGTAAGGAAAACTGTTTGACATACTTTT-GGCCCAAAAGTAGGTCACGGTATACCCAACGAGC-----T------G-AAATACAAACTCTTACTAACGTTTAT--------T-AAAGGAGACATCGTGAGC-A-TTT--------TGTACATG-TATCCGTTGCGGAAAtttatattc
gi|8 : cacAGTCC------------AG---------G-AA-----------CA-G----CA--TTTCTCCAGGAGG-----------------------GAGG-CATAATATGAC---AATGTCAATGCACTATCT--------------GAAAAAGTCCAGGAAAC---TATGACCTACTTTT--------AGCCT------TCAAGGTGCACCAATATGGCC-GATTTGTGAAATGATCATGATGTATTTC-TCCAATGGGGGAGA--ATTGTGAC-AAAATTTTA-----GTGCAAT-ATTT-G-TA-TCCATCA--TAAG-AAA-A---A-G-----TCCAGGAAACT-ATTTGAa
gi|9 : gtatctatgaaaTACTTTAAACCCTAAAGT----AG-GT-CATGA-G----------AAT-----------GC--------A--AACTG---------AATCTGCAATTATCTTA------TAAGGT--TGCT--ACTCCATTTTCGGG-C-AG------TA-CCTGCATCCTT----AACAAAAAAAAAAATCAGGAAATTTGTTTGACCTACTTTT-AGCCCTGAAGTAAATCATGACACATCAATC
gi|9 : AAATTGTTTAACCT--CTAT-AAACCTACAGTAGGCCATGGTGCACCatgcaaactatacttatattcctctgaaattgtttaacctctataaacctacagtaggccatggtgcacc
Alignments
lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444 22222 555555555 1 1 00000000000000000000000000000000 11 2222 66666666666666666666666666 55555555555555555555 11111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 22222222 4444444 5555555555555555555555555555555555555555555555555555555555555555555555 111111111 1111 11111 1111111111 44444444444444444444444444444444444444444444444444444 22222222 444444444444444 1111 88888888888888888888888888888888888888888888888888 111 22 1 1
lowQualScore : 1 2 33333333333 1 22 33333 333333333 0 1 1 1 0 3 2 77777777777777777777777777777777 3 33 7 0000 1 88888888888888888888888888 2 6 5 5 5 88 0 66 3 888 0 99999999999999999999 1 00000 88888 3 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5555 88 444 8 1 33333333 0 1 3333333 1 1111111111111111111111111111111111111111111111111111111111111111111111 4 77 0 999 55 3 222222222 55 4 4 4 0 66 7777 4 777 4 11111 1 4 3 00 0 00 4444444444 4 44444444444444444444444444444444444444444444444444444 66 22 11111111 66 66 222222222222222 2 6 0000 66 0 3 5 4 00000000000000000000000000000000000000000000000000 1 4 0 111 00 0 0 0 3 0 1
lowQualScore : . . ........... . .. ..... ......... . . . . . . . ................................ . .. . .... . .......................... . . . . . .. . .. . ... . .................... . ..... ..... . ...................................................................................... . .... .. ... . . ........ . . ....... . ...................................................................... . .. . ... .. . ......... .. . . . . .. .... . ... . ..... . . . .. . .. .......... . ..................................................... .. .. ........ .. .. ............... . . .... .. . . . . .................................................. . . . ... .. . . . . . .
lowQualScore : 0 5 55555555555 0 00 00000 333333333 0 0 0 0 0 2 5 22222222222222222222222222222222 2 00 0 8888 4 77777777777777777777777777 2 7 7 0 0 44 9 99 9 888 5 55555555555555555555 4 11111 88888 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 6666 11 666 5 0 66666666 7 4 6666666 0 3333333333333333333333333333333333333333333333333333333333333333333333 0 99 1 666 22 2 666666666 55 4 4 4 7 11 4444 4 888 4 11111 9 4 4 44 1 22 1111111111 2 44444444444444444444444444444444444444444444444444444 11 11 66666666 11 11 999999999999999 2 5 6666 99 2 9 0 2 00000000000000000000000000000000000000000000000000 0 2 8 000 88 8 2 0 2 5 0
consensus : ACAAGAGNACCGCAAGCGACGCAACATATGCTTGTCNCGCGGNNAATTC--ATTCAACCTGTAA---------GCACTTTTAGC-TTTNAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTG-A-GTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAACG-AGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-TCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
Reference ( family-1222 ) : ACAAGAGNACCGCAAGCGACGCAACATATGCTTGTCNCGCGGNNAATTC--ATTCAACCTGTAA---------GCACTTTTAGC-TTTNAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTG-A-GTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAACG-AGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-TCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
gi|1 : ACAAGAGGACCGCAAACGATGCA-----------TCGCACGGACAATTC--ATTCAATCTGTAA---------GCACTGTTAGC-CTTAACGTAGGTCAAGGTGGACCAATCCA-GCTGACTTGTT-TTCTC-TGAG---AGGTAGGTTGTAAATTATTTCTCTAGAGAAAGGTTGTAAAAGAAACGTT------AATATA-CG----AAT---CCATGG-TGC-GAG-A-AAGTCC-ATGAAAC--TCTTT---GAATAACTT----G-TAGTCCTA-AAGTACAAA---ATGTAAGTTACGGTGGATCAATTT------------AGCT-------G-AA-----------TA-G----TA--TTTCTCAAAGAGG-----------------------GAAG-T----TGTGAC-AAAATGTCAGAGCAATATCAGTATCC--AACG-AGGACAAGTCCCAG-------C-TGATTTACTTTT--------AG--TA-A--GTTATGGTGCATCAATGAAG-CTGAAAGGCGAACTGA--A---------TC-TTCGA--GAAAGAG--GCTGTAAT-TACATTTCA-----TGGCAAT-ACCT-G-TA-TGCATAA--CCAA-AAA-A---A-A-----TT-GAAAAACT-GATTGACCTACTTTTAGCCCTGAAGT----AG-GT-CACGG-C-T-----ATCAATCCA--------GC--------A--GATTG---------AATCTGTATTCCTA-CATGA--GGGAACT--TGTG--ACTGATTTTCAAGG-T-A-------TG-TCTGTATCT-T----AAC--AACAAAAAGTCCGCGAAACTGTTTGTCCCATTTTT-AGCCCTAAAGTAGGTCATGGTGCACCAATCCAGT-----T------G-AAA---------TTGC--------GC--------TGGGGGGGGGGGGGGTAATC-A-ATTACCAATGTTGTACATG-CATCTATTATGGAAAAAA
gi|10 : AATTCTAAGCCAACCAAAAT---------GCACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTAGGCTGACAC--T-T-CTCGTGAACTCACGT---------AT--TTTCT-TAGAGG-AGGTTGTAATAT-AATGTCCAGTGCAATATCTTG----TATATATCATGA-TGACGAA-A-AAGTCCAAGAAAAC--TATTTTGAAACCTACTTAAGCTGTAACAATGAA-ATACAAA---A-AT
gi|11 : gtcaACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTA-GCTGACACGTGAA-CTC--------ACGT---------ATT-TTTCT-GAGAGGGAGGTTGTGATAT-AATGTCAGTG-CAATATC-TGTATATAT---CTATGA-TGA-GAA-A-AAGTCC-AAGAAAC--TATTT---GACCTACTTAAGCTGTAACAATGAA-ATACAAA---A-cc
gi|12 : TGAA-CAAATTTCA-----GCAGAAT-ATATCG-TA-TCCAAAATTCGAG-AAA-A---A-GGTGTTTTAAGAAAGCTTATTTGGCCTCCTTT--GTCCTAAAGTCAGAAGCGT-CGCCG-TGT-----GCCAATTAA--------GC--------ACAAATTGCACAAATGGAATCTGTAT---TT-TA-GA--GGCAGAT--TGTGTAACCACATTTCAGGG-
gi|13 : --------T-AAGGGAGAAATTGTAGTC-ATATT-GCAATGCTGTACATGACA-CCGTTA-AGAAAGAA
gi|14 : tT-------G-AA-----------TA-GATTATACTTTTCTGTGAGAGG-----------------------GAGG-T----TATAAC-AAAATGTCTGTGCATTAGCTGTATCTAT-------GAAAAGTCCAGGAA-----aattccaccagacatgacttcaattggagagccagc
gi|15 : tataaccgacgAATAAGTCTGGAAAACAGTTCGACCTACTTTTCAGCCCTAAAGTAGGTCAAGGTGCACCAATCCAGC-----T------G-AAA---------T
gi|16 : ggggcatgataagttTCC------------AGCTAACATGTG-AT-----------TATG----TA--TTTCTCTGAGTGT-----------------------GAGG-T----TGTGAC-AAAACGTCAGTGCAATATCTGTATCCATAATG-AGAAg
gi|17 : aggtCT--TGTG--ACTAAATTTCAGGA---------------------CCGT----AAC--G-GAAAAAGTCCGG-AAACAGTTTGACTTA
gi|2 : atACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA-----ATTCAACCTGTAAGCACATTATGCACTTGTAGCTTTTAAAGAAGACCATGATGCACCAATCCA-GCTG-CACGT---------------ACGTG--------A--ACT------GAAGAAGGTTGTAA-------GTG-----CAAT---------------------A-TGA-GAA-A-AAGTCA-GG-GAACTATATTT---GACCTACAT----T-TAGGTCT----------A---A-GTAGATCACGGAACACCAATCCTACTGGAATGCAAACT-------GAAA-----------TT-G----TA--TTTATCTGTGAGGAAACAATCCAGCTGAAATGCAAAGAAGCT----TGTAACTAAAA--TCAGGGCAATATCTGTATCCGTAACG--GAAAAA-TC-----G-----T-TGATCTACTTTCAGTTCTAAAG--TA-G--GTCACGGTGCACCAAT----------------------------------------A--GAGGAAGAAATTTTGAC-CAAATTTCAACTCTGTACATTCATTT-GACATTCCGTTA--CAGA-AAA-A---A-G-----TCCAGAAAAAT-GTTTGGTCTACTTCTATCTCGGA--C----AG-A--CGTGGTG-C-----ACCAATCCT--------GCT-------A--AAgtgttctttgtcttc
gi|2 : ggaaaacagatgtaAATACAAACTT-------AATAT---------AT---CCGTAA-CGG-GAA-AGAAGTCC-GGAAAAC--TGTTT---GACATACTT----T-TAGCACGG-A-atacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|2 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaT-A-TA-TCCGTAA--CGGG-AAAGA---A-G-----TCCGGAAAACT-GTTTGACATACTTTTAGCtggacag
gi|3 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaaatacaaacttaaAT---CCGTAAAGGA-GAA-A-ATATC--GGAGAAC--TGTTT---GACCTACAT----T-TAGCACGG-ACGGACA-----------GTCA------A--AAT----------------------------------------TT-G----TA--TTTGTCCAAGAGG------------------------AGG-TA---NCTGAT-ACA---CCAG----GTATCAGTATCCGTAAAGGAGAAAAGATCGGAGAACTGT-T-TGACCTACATTT--------AG--CATG--G--ACGG---------ACAGTC-AAAATTTGTATT--------------TG-TCCAA--GAGGA-G--GT----ACATAA--TTAA-----GGGTTAA-ATCC-G-TA-TTGATGT--CGG----A-A---A-G-----TCTGGAAAACT-ATTATACCTACATCTAG---TA---T----GG-GCGCGCAG-A-TTTTACACCAATCCA--------GCTCAAATGTA--AACTG---------AAGTTGTATTCCTC-CA-AAA-GGAAGCT--TGTG--ATTAA-TTGCAGGG-C-A-------AAACCTACATCCAT----GAC--GAAAAAA-GTCCGAAAAA-TGCATGACCTACGTTT-AGCCCTATAGTACGTCAAGATACACCATTCCAGC-----T------G-ACA---------TTacggatggacag
gi|4 : G--TA-G--TTCACAATACACCAATCCAG-CAGAAATACAAACCAA--ACATATAC--TCGTCCCA--GAGGAAG--CTTGTGGG-TAAATATCA-----GGGTAAA-ACCT-G-TG-TCCATAA--C-----AA-ATACA-G-----CTCGGAGAACT-GTTTGATCTATATTTAGCGC---AGT----TG-G---ATGG-A-TAC---ACCAATCCAGCTAAAATGC--------A--AACTC---------AACTCATACTTCTC-C--GACCGAAAGCT--TGTG--ACTAAATTCCAGGGAA-A-------TA-TCTGCATGTATTCAAAAT--GAAAATAAGTTCAGAAAAC----TGACCTACGTTT-AGACGTAAAGTAGGTCACAGTGCACAAATCAAGCAACAAT------GCAAATTC------TTGC--------TCTTCTTAATT-AAGGGAAATATTGTAACCAA-ATT-TCAGTGCTGTATATG-CATCCAATATAGAAACAAaattactcttactcttgttgatacgttacagaaaaaggtaagggaaacattatctcggacggacag
gi|5 : cat--TGTG--TTTAAATTTTAGGG-T--------------TGTGTCTCT----ACC--AGAATAAAGTCTGGAAAACC--TTGACCTACTTTA-AGCCTAAAAGCAGGTCATTGTGCACCAATCCAGC-----TCACATGA-AAA---------TTGC--------ctttaagtccagaaaacataacctcggacagccag
gi|5 : A-GAATA-AAGTCT-GGAAAAC--C--TT---GACCTACTT----T-AAGC-CT--------AAA---A-GCAGGTCATTGTGCACCAATCC------------AGCTCACAT--G-AAAATTGCATGATTATG----TC--TTCCTCTGAA--------------------------GAGG-T----TGTGT------TGTCAGCGCAATATCTGTATCCGCAATG-AGAAAAAGTCCAGGAAAGTGTC-TGACATACTGTT-------------A-G--CTCCC--TGTAC---------------------------A---------TC-TCTAA--GAGGAAG--GTTGTGAT-TAA--------------------CCT-G-TA-TCTATAG--TGGGGAAA-A---A-A-----TCTGGAAAATT-GTTTGACCTACTTTTAGATATAAAGT----AA-GT-CAAGGTA-T-----ACCAATGCA--------G--------------CTG---------AA-----ATACTTT-GA-GA--GGAAACTTGTGTG--ACTAAA---CAGGG-CAA-------CA-TCTATATCCGT----AAC--AAAAAatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|6 : tgtgtttaaattttagggttgtgtctctaccAA-A-AAGTCT-GGAAAAT--TAT------ACCC------------------------CAAATTTA-GTAGGATATGATTCACCAATCC------------AGCT-------G-AA------------------------------AAGAGA-----------------------AAAA-T----TGTGAC-CAAAT-TCAGCACTGTACATGCATCCATTAT----AAAAAGTCCAGAAA-----TATGACGT-----C--------AGA-TG-GACGCTATGATGGATGAATGCA--------CACACACCGA--T---------TCCTCAGA--GAGAAAG--CTTGTGAC-TAAATTTCA-----GGATAAT-ATCT-T-TA-TCTGTAA--C--C-AAA-A---ATG-----TCCGAAAAACT-GTTTGACCTACTTTTccaag
gi|7 : tTGACATACTTT-AGCCTTAAAAT----A--AT-C-CAG-C-T-----G-AAAT-----------GC--------A--AA------------AACTTGTATTTCTC-CG-AG--GGGAGCT--TGTG--ATTAAATTTCAGGG-T-AATACATGTA-TCTGAATCCGT----AAC--GAAAAAAGGTAAGGAAAACTGTTTGACATACTTTT-GGCCCAAAAGTAGGTCACGGTATACCCAACGAGC-----T------G-AAATACAAACTCTTACTAACGTTTAT--------T-AAAGGAGACATCGTGAGC-A-TTT--------TGTACATG-TATCCGTTGCGGAAAtttatattc
gi|8 : cacAGTCC------------AG---------G-AA-----------CA-G----CA--TTTCTCCAGGAGG-----------------------GAGG-CATAATATGAC---AATGTCAATGCACTATCT--------------GAAAAAGTCCAGGAAAC---TATGACCTACTTTT--------AGCCT------TCAAGGTGCACCAATATGGCC-GATTTGTGAAATGATCATGATGTATTTC-TCCAATGGGGGAGA--ATTGTGAC-AAAATTTTA-----GTGCAAT-ATTT-G-TA-TCCATCA--TAAG-AAA-A---A-G-----TCCAGGAAACT-ATTTGAa
gi|9 : gtatctatgaaaTACTTTAAACCCTAAAGT----AG-GT-CATGA-G----------AAT-----------GC--------A--AACTG---------AATCTGCAATTATCTTA------TAAGGT--TGCT--ACTCCATTTTCGGG-C-AG------TA-CCTGCATCCTT----AACAAAAAAAAAAATCAGGAAATTTGTTTGACCTACTTTT-AGCCCTGAAGTAAATCATGACACATCAATC
gi|9 : AAATTGTTTAACCT--CTAT-AAACCTACAGTAGGCCATGGTGCACCatgcaaactatacttatattcctctgaaattgtttaacctctataaacctacagtaggccatggtgcacc
blockSeqs : T A ACATATGCTTG T TG TTCTA GCACATTAT T C G G G A G TTCTCGTGAACTCACGTAT T T G TACA T CCAGTGCAATATCTTGTATATA A A C T G CA TA A TGA AAGCTGTAACAATGAAATA A TTTA CGGAA C TACTGGAATGCAAACTGAAATTGTATTTATCTGTGAGGAAACAATCCAGCTGAAATGCAAA C ATAA TA ATG T T GTAAAGGA A AGTGTC C AGCCTTCAAGGTGCACCAATATGGCCGATTTGTGAAATGATCATGATGTATTTC A TG AAA CA A ACTCTGTAC TC C A T TT GGGG G TAC T GTGTT A T T CAGAAGCGT G ATTTTACACCAATCCAGCTCAAATGTAAACTG TC TC CAAAA TG TA TAATACATGTAT C G TCAA AA A C A AACAATGCAAATTCTTGCTCTTCTTAATT A T AT G A T T G
blockSeqs : . . . C G G . A G GAACTCACGTATT T G A TAT T CAGTGCAATATCTGTATATAT A . . . . C . A . AAGCTGTAACAATGAAATA A A TTGTG C AGCTCACATGAAAATTGCATGATTATGTCTTCCTCTGAA . A A ACG T A ATAATGA A CTGTT C AGATGGACGCTATGATGGATGAATGCACACACACCGATTCC C . G A A GCAG T . . . . GAG . . . . C . T GGGCG G TGTGCCAATTAAGCACAAATTGCACAAATGG GT TT CGACC . . CAAAAC C A . . A . A TGAAATACAAACTCTTACTAACGTTTATT T T AA T . T C C
blockSeqs : . A C C . . . ACGTGAA . . . TAT C AATATAT G . . . . A . A . TTAGCACGGACGGA A A TGATT C AGCTAACATGTGATTATGTATTTCTCTGAGTGT . . A ATG G A GCAATGA A ACTA A AGCATGGACGGACAGTCAAAATTTGTATTTG A . C C A GGGT A . . . . AGA . . . . C . T AAGT G ATACACCAATCCAGCTAAAATGCAAACTC CT AC TAGA . . AAATAT T A . . T . C C C A . . . .
blockSeqs : . . GCAAT G . . . . C . G . TTAGGTCT A A . . AGGAACAGCATTTCTCCAGGAGG . . A TG C G GTAACG A TA G AGTTCTAAAGTAGGTCACGGTGCACCAAT G . G G A GGGT A . . . . GGG . . . . T . T AGGT A TATACCAATGCAGCTG CT TT GAGA . . CAACAT T C . . C . T
blockSeqs : . . . . . T . G . TAAGCCT . A TTGTATTTGTCCAAGAGG . . C AT C A ATTAT A T C AGCTCCCTGTACATC A . C T A GGAT T . . . . AAG . . . . C . T AGA A CTGAAATGCAAA TC TT CGAG . . CAGTAC A G . . T . C
blockSeqs : . . . T . A . . . . AGCTGAAAAGAGA . . . A T G AT . . . A C . GTGC T . . . . GG . . . . T . T TGG A GAATGCAAACTG . . TTA . . T C G . . T . T
blockSeqs : . . . . . . . . . . . C . C . . . . . . . C . . . . C . A AAT . . . . . T . . T . T
blockSeqs : . . . . . . . . . C . . . . .
blockSeqs : .
blockSeqCons : TAC* GCAATATAT***************** TAAGCTTACAGATA****** A**** GTAATG** ANTN*** AGGT****** CGGA**** CAATAC*********
originalCons : ACAAGAGNACCGCAAGCGACGCAACATATGCTTGTCNCGCGGNNAATTC--ATTCAACCTGTAA---------GCACTTTTAGC-TTTNAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC-----CAATATC-CG----TAT---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTT----T-TAGCACTG-A-GTACAAA---A-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAACG-AGAAAAAGTCCAGGAA-----T-TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTC-CA-GA--GGAAGCT--TGTG--ACTAAATTTCAGGG-C-A-------TA-TCTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
finalCons : ACAAGAGNACCGCAAGCGACGCAACATATGCTTGTCNCGCGGNNAATTC--ATTCAACCTGTAA---------GCACTTTTAGC-TTTNAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATAC-AACGTGCAATATAT-----------------CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTACTTTAAGCTTACAGATA------CAAAA----GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAATG--GAAAAAGTCCAGGAAANTN---TGACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGTAGGT------CGCGG-N-T-----ACCAATCCA--------GC--------A--AACTG---------AATCTGTATTCCTCCGGA----GGAAGCT--TGTG--ACTAAATTTCAGGGCAATAC---------CTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
Alignments
lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444 22222 555555555 1 1 00000000000000000000000000000000 11 88888888888888888888888888888888888888 11 888888888888888888888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 2222222222 2222222222 5555555555555555555555555555555555555555555555555555555555555555555555 1111111111111 1111 11111 1111111111 3333333333333 4444444444444444444444444 22222 1111111111 1111 88888888888888888888888888888888888888888888888888 111 22 1 1
lowQualScore : 1 2 33333333333 1 22 33333 333333333 0 1 1 1 0 3 2 77777777777777777777777777777777 3 33 7 888 33333333333333333333333333333333333333 2 6 5 5 5 88 0 66 3 888 33 5 888888888888888888888 77 8 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 5555 5 7777 8 1 3333333333 5555555555 1 1111111111111111111111111111111111111111111111111111111111111111111111 4 77 0 999 4 1 6666666666666 444 4 55 7777 4 777 4 00000 0 4 3 00 0 00 4444444444 4 3333333333333 7 0 8888888888888888888888888 66 22 33333 66 66 0 0 7777777777 0 8 2222 77 0 1 22 5 4 00000000000000000000000000000000000000000000000000 1 4 0 111 00 0 0 0 3 0 1
lowQualScore : . . ........... . .. ..... ......... . . . . . . . ................................ . .. . ... ...................................... . . . . . .. . .. . ... .. . ..................... .. . ...................................................................................... . .... . .... . . .......... .......... . ...................................................................... . .. . ... . . ............. ... . .. .... . ... . ..... . . . .. . .. .......... . ............. . . ......................... .. .. ..... .. .. . . .......... . . .... .. . . .. . . .................................................. . . . ... .. . . . . . .
lowQualScore : 0 5 55555555555 0 00 00000 333333333 0 0 0 0 0 2 5 22222222222222222222222222222222 2 00 0 222 00000000000000000000000000000000000000 2 7 7 0 0 44 9 99 9 888 44 0 111111111111111111111 44 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 6666 0 8888 5 0 4444444444 4444444444 0 3333333333333333333333333333333333333333333333333333333333333333333333 0 99 1 666 4 9 3333333333333 666 0 55 7777 0 000 0 00000 7 0 4 44 1 22 1111111111 2 5555555555555 6 2 1111111111111111111111111 11 11 99999 99 99 4 4 3333333333 4 9 1111 99 1 7 55 0 2 00000000000000000000000000000000000000000000000000 0 2 8 000 88 8 2 0 2 5 0
consensus : ACAAGAGNACCGCAAGCGACGCAACATATGCTTGTCNCGCGGNNAATTC--ATTCAACCTGTAA---------GCACTTTTAGC-TTTNAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATATAAACGTC--GTGCA--------ATA-----TA----T---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTAC-TT-TAAGCC-T-AC----GGATACAAAA-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TATG----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAACG-GA-AAAAGTCCAGGAAA-TNT--GACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----AC--CAATCCAGCT-------A--AACTG---------AATCTGTATTCCTCCG-GA-GGAAGCT--TGTG--ACTAAATTTCAGGGCAATAC------CTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
Reference ( family-1222 ) : ACAAGAGNACCGCAAGCGACGCAACATATGCTTGTCNCGCGGNNAATTC--ATTCAACCTGTAA---------GCACTTTTAGC-TTTNAAGTAGGNCATGATGCACCAATNCA-GCTGACACGTT-T-CTC-TGAG---ACGTG--------ATTATTTCT-TAGAGGAAGGTTGTAATACAA-C-----GTGCA--------ATA-----TA----T---CCGTGA-TGA-GAA-A-AAGTCC-GGAAAAC--TATTT---GACCTAC-TT-TAAGCT-T-AC----AGATACAAAA-GTAGGTCACGGTGCACCAATCC------------AGCT-------G-AA-----------TA-G----TA--TTTCTCCGAGAGG-----------------------GAGG-T----TGTGAC-AAAATGTCAGCGCAATATCTGTATCCGTAATG-GA-AAAAGTCCAGGAAANTNT--GACCTACTTTT--------AG--TA-G--GTCACGGTGCACCAATGCAG-C-GAAACGCGAACCGA--A---------TC-TCCGA--GAGGAAG--GTTGTGAC-TAAATTTCA-----GGGCAAT-ATCT-G-TA-TCCGTAA--CGGG-AAA-A---A-G-----TCCGGAAAACT-GTTTGACCTACTTTTAGCCCTAAAGT----AG-GT-CGCGG-N-T-----AC--CAATCCAGC--------A--AACTG---------AATCTGTATTCCTCCG-GA-GGAAGCT--TGTG--ACTAAATTTCAGGGCAATAC------CTGCATCCGT----AAC--GAAAAAAAGTCCGGAAAACTGTTTGACCTACTTTT-AGCCCTAAAGTAGGTCACGGTGCACCAATCCAGC-----T------G-AAA---------TTGC--------GC--------T-AAGGGAGANATCGTAATC-A-ATT-NCAATGCTGTACATG-CATCCGTTACGGAAANAA
gi|1 : ACAAGAGGACCGCAAACGATGCA-----------TCGCACGGACAATTC--ATTCAATCTGTAA---------GCACTGTTAGC-CTTAACGTAGGTCAAGGTGGACCAATCCA-GCTGACTTGTT-TTCTC-TGAG---AGGTAGGTTGTAAATTATTTCTCTAGAGAAAGGTTGTAAAAGAAAC-----GT-TA--------ATA-----TACGAAT---CCATGG-TGC-GAG-A-AAGTCC-ATGAAAC--TCTTT---GAATAAC-TTGTAGTCC-T-AA----AG-TACAAAATGTAAGTTACGGTGGATCAATTT------------AGCT-------G-AA-----------TA-G----TA--TTTCTCAAAGAGG-----------------------GAAG-T----TGTGAC-AAAATGTCAGAGCAATATCAGTATCC--AACGAGG-ACAAGTCCCAG-----CT--GATTTACTTTT--------AG--TA-A--GTTATGGTGCATCAATGAAG-CTGAAAGGCGAACTGA--A---------TC-TTCGA--GAAAGAG--GCTGTAAT-TACATTTCA-----TGGCAAT-ACCT-G-TA-TGCATAA--CCAA-AAA-A---A-A-----TT-GAAAAACT-GATTGACCTACTTTTAGCCCTGAAGT----AG-GT-CACGG-C-T-----AT--CAATCCAGC--------A--GATTG---------AATCTGTATTCCTACATGA-GGGAACT--TGTG--ACTGATTTTCAAGGTA-TGT------CTGTATCT-T----AAC--AACAAAAAGTCCGCGAAACTGTTTGTCCCATTTTT-AGCCCTAAAGTAGGTCATGGTGCACCAATCCAGT-----T------G-AAA---------TTGC--------GC--------TGGGGGGGGGGGGGGTAATC-A-ATTACCAATGTTGTACATG-CATCTATTATGGAAAAAA
gi|10 : AATTCTAAGCCAACCAAAAT---------GCACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTAGGCTGACAC--T-T-CTCGTGAACTCACGT---------AT--TTTCT-TAGAGG-AGGTTGTAATATAA-TGTCCAGTGCA--------ATATCTTGTA----TATATCATGA-TGACGAA-A-AAGTCCAAGAAAAC--TATTTTGAAACCTAC--T-TAAGCTGTAACAATGAAATACAAAA-AT
gi|11 : gtcaACTTTTAGC-TTTCAAGTAGGGCATGATGCACCAATGTA-GCTGACACGTGAA-CTC--------ACGT---------ATT-TTTCT-GAGAGGGAGGTTGTGATATAA-TGTCA-GTGCAATATCTGTATA-----TA----T---CTATGA-TGA-GAA-A-AAGTCC-AAGAAAC--TATTT---GACCTAC--T-TAAGCTGTAACAATGAAATACAAAA-cc
gi|12 : TGAA-CAAATTTCA-----GCAGAAT-ATATCG-TA-TCCAAAATTCGAG-AAA-A---A-GGTGTTTTAAGAAAGCTTATTTGGCCTCCTTT--GTCCTAAAGTCAGAAGCGT-CGCCG-TGT-----GC--CAATTAAGC--------ACAAATTGCACAAATGGAATCTGTAT---TTTA-GA-GGCAGAT--TGTGTAACCACATTTCAGGG
gi|13 : --------T-AAGGGAGAAATTGTAGTC-ATATT-GCAATGCTGTACATGACA-CCGTTA-AGAAAGAA
gi|14 : tT-------G-AA-----------TA-GATTATACTTTTCTGTGAGAGG-----------------------GAGG-T----TATAAC-AAAATGTCTGTGCATTAGCTGTATCT---ATG----AAAAGTCCAGGAAaattccaccagacatgacttcaattggagagccagc
gi|15 : tataaccgacgAATAAGTCTGGAAAACAGTTCGACCTACTTTTCAGCCCTAAAGTAGGTCAAGGTGCACCAATCCAGC-----T------G-AAA---------T
gi|16 : ggggcatgataagttTCC------------AGCTAACATGTG-AT-----------TATG----TA--TTTCTCTGAGTGT-----------------------GAGG-T----TGTGAC-AAAACGTCAGTGCAATATCTGTATCCATAATG-AG-AAg
gi|17 : aggtTTGTGAC-TAAATTTCA-----GGAC----------------CGTAA--CGG--AAA-A---A-G-----TCCGG-AAACA-GTTTGACTTA
gi|2 : atcACAAGAGTACAACAAGCGACACAACATATGCTTGTCTTGCGGTGAA-----ATTCAACCTGTAAGCACATTATGCACTTGTAGCTTTTAAAGAAGACCATGATGCACCAATCCA-GCTG-CACGT---------------ACGTG--------A--ACT------GAAGAAGGTTGTAA------------GTGCA--------AT---------------------A-TGA-GAA-A-AAGTCA-GG-GAACTATATTT---GACCTACATT-TAGGTC-T---------------AA-GTAGATCACGGAACACCAATCCTACTGGAATGCAAACT-------GAAA-----------TT-G----TA--TTTATCTGTGAGGAAACAATCCAGCTGAAATGCAAAGAAGCT----TGTAACTAAAA--TCAGGGCAATATCTGTATCCGTAACG-GA-AAAA-TC--G------TT--GATCTACTTTCAGTTCTAAAG--TA-G--GTCACGGTGCACCAAT----------------------------------------A--GAGGAAGAAATTTTGAC-CAAATTTCAACTCTGTACATTCATTT-GACATTCCGTTA--CAGA-AAA-A---A-G-----TCCAGAAAAAT-GTTTGGTCTACTTCTATCTCGGA--C----AG-A--CGTGGTG-C-----AC--CAATCCTGCT-------A--AAgtgttctttgtcttc
gi|2 : ggaaaacagatgtaAATACAAAC-----TT--A--------ATA-----TA----T---CCGTAA-CGG-GAA-AGAAGTCC-GGAAAAC--TGTTT---GACATAC-TT-TTAGC----AC----GGATatacaaacttaatatatccgtaacgggaaagaagtccggaaaactgtttgacatacttttagcacggatggacag
gi|2 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaT-A-TA-TCCGTAA--CGGG-AAAGA---A-G-----TCCGGAAAACT-GTTTGACATACTTTTAGCggacag
gi|3 : ggaaaacagatgtaacaagagtacaacaagcgacacaacatatgcttgtcttgcggtgaaattcaacctgtaagcacattatgcacttgtagcttttaaagaagaccatgatgcaccaatccagctgcacgtacgtgaactgaagaaggttgtaagtgcaatatgagaaaaagtcagggaactatatttgacctacatttaggtctaagtagatcacggaacaccaatcctactggaatgcaaactgaaattgtatttatctgtgaggaaacaatccagctgaaatgcaaagaagcttgtaactaaaatcagggcaatatctgtatccgtaacggaaaaatcgttgatctactttcagttctaaagtaggtcacggtgcaccaatagaggaagaaattttgaccaaatttcaactctgtacattcatttgacattccgttacagaaaaaagtccagaaaaatgtttggtctacttctatctcggacagacgtggtgcaccaatcctgctaaaatacaaacttaaA----T---CCGTAAAGGA-GAA-A-ATATC--GGAGAAC--TGTTT---GACCTAC-AT-TTAGC----AC----GGAC----------GG--ACAGT----CAA----------------------------AA-----------TTTG----TA--TTTGTCCAAGAGG------------------------AGG-TA---NCTGAT-ACA---CCAG----GTATCAGTATCCGTAAAG-GAGAAAAGATCGGAGAACTGTTTGACCTACATTT--------AG--CATG--G--ACGG---------ACAGTC-AAAATTTGTATT--------------TG-TCCAA--GAGGA-G--GT----ACATAA--TTAA-----GGGTTAA-ATCC-G-TA-TTGATGT--CGG----A-A---A-G-----TCTGGAAAACT-ATTATACCTACATCTAG---TA---T----GG-GCGCGCAG-A-TTTTACAC--CAATCCAGCTCAAATGTA--AACTG---------AAGTTGTATTCCTCCA-AAAGGAAGCT--TGTG--ATTAA-TTGCAGGGCAAAAC------CTACATCCAT----GAC--GAAAAAA-GTCCGAAAAA-TGCATGACCTACGTTT-AGCCCTATAGTACGTCAAGATACACCATTCCAGC-----T------G-ACA---------TTacggatggacag
gi|4 : G--TA-G--TTCACAATACACCAATCCAG-CAGAAATACAAACCAA--ACATATAC--TCGTCCCA--GAGGAAG--CTTGTGGG-TAAATATCA-----GGGTAAA-ACCT-G-TG-TCCATAA--C-----AA-ATACA-G-----CTCGGAGAACT-GTTTGATCTATATTTAGCGC---AGT----TG-G---ATGG-A-T-----ACACCAATCCAGCTAAAATGCA--AACTC---------AACTCATACTTCTCCG-ACCGAAAGCT--TGTG--ACTAAATTCCAGGGAAATAT------CTGCATGTATTCAAAAT--GAAAATAAGTTCAGAAAAC----TGACCTACGTTT-AGACGTAAAGTAGGTCACAGTGCACAAATCAAGCAACAAT------GCAAATTC------TTGC--------TCTTCTTAATT-AAGGGAAATATTGTAACCAA-ATT-TCAGTGCTGTATATG-CATCCAATATAGAAACAAaattactcttactcttgttgatacgttacagaaaaaggtaagggaaacattatctcggacggacag
gi|5 : cat--TGTG--TTTAAATTTTAGGGT------------TGTGTCTCT----ACC--AGAATAAAGTCTGGAAAACC--TTGACCTACTTTA-AGCCTAAAAGCAGGTCATTGTGCACCAATCCAGC-----TCACATGA-AAA---------TTGC--------ctttaagtccagaaaacataacctcggacagccag
gi|5 : A-GAATA-AAGTCT-GGAAAAC--C--TT---GACCTAC-TT-TAAGCC-T-A------------AAA-GCAGGTCATTGTGCACCAATCC------------AGCTCACAT--G-AAAATTGCATGATTATG----TC--TTCCTCTGAA--------------------------GAGG-T----TGTGT------TGTCAGCGCAATATCTGTATCCGCAATGAGA-AAAAGTCCAGGAAAGTGTCTGACATACTGTT-------------A-G--CTCCC--TGTAC---------------------------A---------TC-TCTAA--GAGGAAG--GTTGTGAT-TAA--------------------CCT-G-TA-TCTATAG--TGGGGAAA-A---A-A-----TCTGGAAAATT-GTTTGACCTACTTTTAGATATAAAGT----AA-GT-CAAGGTA-T-----AC--CAATGCAG--------------CTG---------AA-----ATACTTTGA-GA-GGAAACTTGTGTG--ACTAAA---CAGGGCAACAT------CTATATCCGT----AAC--AAAAAatgattatgtcttcctctgaagaggttgtgttgtcagcgcaatatctgtatccgcaatgagaaaaagtccaggaaagtgtctgacatactgttagctccctgtacatctctaagaggaaggttgtgattaacctgtatctatagtggggaaaaaatctggaaaattgtttgacctacttttagatataaagtaagtcaaggtataccaatgcagctgaaatactttgagaggaaacttgtgtgactaaacagggcaacatctatatccgtaacaaaaaccaag
gi|6 : tgtgtttaaattttagggttgtgtctctaccAA-A-AAGTCT-GGAAAAT--TAT----------AC-CC-CAAATT-T-A----------------GTAGGATATGATTCACCAATCC------------AGCT-------G-AA------------------------------AAGAGA-----------------------AAAA-T----TGTGAC-CAAAT-TCAGCACTGTACATGCATCCATTAT---A-AAAAGTCCAG--AAATAT--GACGT-----C--------AGA-TG-GACGCTATGATGGATGAATGCA--------CACACACCGA--T---------TCCTCAGA--GAGAAAG--CTTGTGAC-TAAATTTCA-----GGATAAT-ATCT-T-TA-TCTGTAA--C--C-AAA-A---ATG-----TCCGAAAAACT-GTTTGACCTACTTTTccaag
gi|7 : tTGACATACTTT-AGCCTTAAAAT----A--AT-C-CAG-C-T-----G---AAAT---GC--------A--AA------------AACTTGTATTTCTCCG-AG-GGGAGCT--TGTG--ATTAAATTTCAGGGTAATACATGTATCTGAATCCGT----AAC--GAAAAAAGGTAAGGAAAACTGTTTGACATACTTTT-GGCCCAAAAGTAGGTCACGGTATACCCAACGAGC-----T------G-AAATACAAACTCTTACTAACGTTTAT--------T-AAAGGAGACATCGTGAGC-A-TTT--------TGTACATG-TATCCGTTGCGGAAAtttatattc
gi|8 : cacAGTCC------------AG---------G-AA-----------CA-G----CA--TTTCTCCAGGAGG-----------------------GAGG-CATAATATGAC-AA--TGTCAATGCACTATCTG-------------A-AAAAGTCCAGGAAACTAT--GACCTACTTTT--------AGCCT------TCAAGGTGCACCAATATGGCC-GATTTGTGAAATGATCATGATGTATTTC-TCCAATGGGGGAGA--ATTGTGAC-AAAATTTTA-----GTGCAAT-ATTT-G-TA-TCCATCA--TAAG-AAA-A---A-G-----TCCAGGAAACT-ATTTGAa
gi|9 : gtatctatgaaaTACTTTAAACCCTAAAGT----AG-GT-CATGA-G------------AAT---GC--------A--AACTG---------AATCTGCAATTATCTT----ATAAGGT--TGCT--ACTCCATTTTCGGGCAGTAC------CTGCATCCTT----AACAAAAAAAAAAATCAGGAAATTTGTTTGACCTACTTTT-AGCCCTGAAGTAAATCATGACACATCAATC
gi|9 : AAATTGTTTAACCT--CTAT-AAACCTACAGTAGGCCATGGTGCACCatgcaaactatacttatattcctctgaaattgtttaacctctataaacctacagtaggccatggtgcacc