lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2 222 11 44444444444444444444 11 33333333333333333 22222 11111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111 1111 1111 22222222 44 111 11111 444444444 4444 1 11 0000000000000000000000000000000000000000000000000000000 2222222 111111 2 2 66666
lowQualScore : 2 4 7 4 4 77 3 3 222 3 55 0 4 9999 66 4 4 99999999999999999999 0 99 666 22 3 44 66666666666666666 6 555 6666 11111 55555 3 3 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7777777777777777777777 6 1111 7777 55 1111 11111111 22 0 2 3 111 99 3 3 3 3 3 3 1 7777 11111 0 555555555 3333 1 66 2222222222222222222222222222222222222222222222222222222 2222222 77 5 666666 9 5 0 5 3 11111 2
lowQualScore : . . . . . .. . . ... . .. . . .... .. . . .................... . .. ... .. . .. ................. . ... .... ..... ..... . . ..................................................................................................................................... ...................... . .... .... .. .... ........ .. . . . ... .. . . . . . . . .... ..... . ......... .... . .. ....................................................... ....... .. . ...... . . . . . ..... .
lowQualScore : 9 4 9 0 0 22 2 7 666 9 77 1 4 4444 11 4 4 99999999999999999999 8 00 444 22 1 22 66666666666666666 2 444 5555 11111 44444 3 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9999999999999999999999 4 6666 7777 00 3333 00000000 00 2 6 6 444 66 6 6 6 6 6 6 2 0000 11111 1 333333333 0000 4 44 1111111111111111111111111111111111111111111111111111111 0000000 99 7 444444 8 0 8 6 2 44444 5
consensus : CATTGCCAGAAA-TATTACCGTTTTTGCTAATTT-G-CATAAA-CCGCCATGTT-GGATTCCCGATCGCC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------T-A-CATA-CCTTGA---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-TTACT---A-TCACAAAAGAA------CT---GTTTTC-CNC-A--AAA--A-GT---AATA-------AAA-AT-----TTG----TA---T---AAAA-N--TGAAGGTT-C------CA--AGAAC-AAC-TGAAAA-C-C-GAA-GCGGAA-------ATCGCCA--CNTTTC----CAATGAT--GG-CG-CAT----AG-AAAAA--GATCGC-AAAA---TGCCATGAAG-TGC-C-AA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-GGCATTATTCGG--AA-AATCCTAAAGTAA--TT-T---AGTG-A------AAAT-T-GTCCCATGTAGA-TAA------ACGTTGC-A-N---AC--CG-TTTTTGAT------ATTCTGGNTACA-TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
Reference ( gi|3 ) : CATTGCCAGAAA-TATTACCGTTTTTGCTAATTT-G-CATAAT-CCGCCATGTTTGGATTCCCGATCGCCCAATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-GATTTC---C-TT-G--C-----------T-A-C-TA-CTTTGA---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-TTACT--TA-TCACAAAAGAA---G--CT---GTTTTC-CGC-A--AAA--A-GT---AATA-------AAA-AT-----TTG----TA---T---AAAA-T--TGA------C------CA--AGAACTAATATAAAAA-C-C-GAG-GCGGAA-------ATCGCCA--CATTTC----CAATGAT--GG-CG-CAT----AT-AAAAACCGGTCGC-AAAA---TGCCATGAAA-TGC-C-AA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-GGCATTATTC-C--AA-AATCCGAAAGTAAATTT-T---AGTG-A------AAAT-TGGTCCCATGTAGT-TAA------AC-TTGC-A-A---AC--TG-TTTTTGAT------ATTCTAGGTACATTTTTTGAAGGGTTCCTCGCTTGATTTTAAAAAAAATGATCATT
gi|4 : CATTGCCAAA-----TTACCGTTTTGGCTAATTT-GGCATAAT-CCGC-ATGTT-GGATTCCCGATCGCC-AA--G-GCCGAACAAAAGGA----T--T-TA-TA-ATAAGG---------------AAAAAATATTTAACATCT-GATTTC---C-TTTG--C-----------T-AAC-TA-CTTTGA---ATTTC----CAAA-AT--CCTAAA-----GAGGAGACGGTTATT------CACAAAAGAA------CT---GTTTTC-CGC-A--AAA--A-GT-----TA-------AAA-TT-----TCA----TA---T---AAAA-T--TG-------C------CA--AGA-CAAAT-TAAAAATC-C-GAG--CGGA---------TCGCC---CATT-C----CAATGAT--GG-CG-CAT----AT-AAAAAC--GTCGCAAAAA---TGCAATGAAG-TGC-CAAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC----TA-GGCATTATTC-CATAA-AATCCG-AAGT-AATTT-T---AGTG--------AAAT-T-GTCCCATG-AGT-TAA------CG-TTGCAA-A---AC--TGTTTTTTGAT------ATTCTAGGTACA-TTTTTGAA-GGTTCCTCGCTTGATTT-----AAAATGATCATT
gi|1 : CATTGCCAGAAA-TATTACCGTTTTTGATAATTT-G-CAAAAAACCACCATATT-GGATTCCCGATCGCC-AATGG--CCGAAGAAA-AGA----T--TATA-TA-A----G---------------GAAAAAAATT-AACATTTTAATTTC---C-AT-G--C-----------T-A-AATA-CCTTGATGAATTTC----TAAA-AT--CCTAAA-----GAGGAGACG-TTAC---TG-TCACAAAGGGA---C--TT---GTTTTC-CAA-AAGAAA--A-GC---AGTATTTT---AAA-GTATGTATTT----TA---T---AAAA-G--TGAAAGTTTC------C---AGAAC-A--ATGAAAA-C-CTGAA-GCGGAT-------ATCACCA--TAATTCCATGCAGTGAT--GG-TT-CAT----AG-AAAAA--GATGGC-GAAA---TGCCATGAAG-TGC-C-TT-CTTC-AA-A------G-------AA-----ATCT-----------CATTATTTGG--AA-AATCCTAAAGT------------------------------GTCCCATGAA---CAA------ACGTTGC-ATACATAC--CC-TTTTTTATATATACATTCTGGCT-TAATTTCTGAA-GGTCCCTCGATTGATTC-----AAAATGAT
gi|7 : CATAGCCA-AAA-TATTACCATTCG-GCTAATTT-G-CATAAaccccggtgaattttcaatatagaaccaaaataccatt
gi|6 : taCATAGCCA-AAA-TATTACCATTCG-GCTAATTT-G-CATAAatcgttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacagagcccagtaagtaaactttgactagggctaccttttagggcattctggcttaat
gi|14 : taATTGC-AGAAA-TATTACCAGTTTTGCTAATTT-G-CATAAA-CCGCCATGTT-GGAT-CCCGATCGTCTAATGGCGCAGAA--AA-GGA----T--TATAGTA-A----G----------------AAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------C-A-C-TA-CTGTGA---ATTTC----CAAA-A--TCCTAAA-----GGGGAGACG-TTACT--C-----TAAAAGAA---atcgttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacaggagccagtaagtaaactttgactagggctaccttttagggcattctggctttaattt
gi|5 : ATTGCCAGAAA-TATTACAA-TTTTGCTAATTT-C-AACAAA-CCACCATA-TTAAATTCCCCATCG-TGAATGG-T-----CAAA-GGAAAATT--TGTA-TA-AG---G---------------AAAAAATATTAAACTTCT-TATTTG---A--A-G--C-----------TAA-G-TG-CCTTGA---ATTTC----TAAT-A--TCCTAAT-----CAGGAGATG-TTAC----AGTCGCAAAAGAA------CTTAAG-TTCC-CTC------A--A-GC---AAT--------AAC-AT-----ATG----TA---T---AAAA---------------------A--TGAATT----------------------GAA-------GTCACCA--GCTTTT----CAAAGAT--GG-TT-CAA----AGAAAAAATCGGT---------------ATGAAG-TGT-C-AA-CTTC-AA-A-CAAACA-TAAAAAAA-----ATCATCCGT-T----CATTATTT-G--AACAATCCTAAAGTAA--TC-T---AGT--A------CAAT-T-ATCTCA--TAAA-TAA------GCGTTGC-A-T---GC--CG--TTTTGAT------ATTCTGTTTAAA--TTTCGAAG--------GCTTGATTT----AAAAATGATttt
gi|16 : ATTGCCAGAAA-TATTACCGTTTT-GCTAATTT-G-CATAAT-CCGCCATG-TTAGATTCCCAATCG-CCAAT-G-GCCGAACAAA-GGA----T--TATA-TA-A----gacttgggtgaattttaacttataagacctatagtaccatt
gi|2 : TTGCCAGAAAATATTAC-GTTTT-GCTAATTTTG-CATAATTCCGCCATGTT-AGATTCCCAATCGCC-AATGG-ACCGAACAAA-GGA----T--TATA-TA-A----GG--------------AAAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------T-A-C-TA-CTTTGA---ATTTC----CAAA-A--TCCT-AA-----GAGGAGACG-TTAATACTATTCACAAAAGACTT-T--CT---GTTTTCTCGCAA--AAA--A-GT---AAT--------TAA-AT-----TTA----TA---TTAAAAAA-T--TGA------CAGGTATCC--AGAAC-AAT-TAAAAATC-C-GAGTGGGAAA-------ATCGCCA--CATTTC----CAATGATTGAG-CG-CAT----AT-CAAAA---GTCGC----A---TGCCATAAAGTTGC-C-AA-CTTC-AA-A-CAAACGAT--AGCAA-----ATCTTC----TA-GGCATTATTCGA--AA-AATCCTATAGTAAA-TT-G---AGTG---------AATCTGGTCCCATG-AGTATAACGCCCCCC-TTGC-A-A---ACTGTG-TTTTTGAT------ATTCT-GGTACATTTTTTTGAAGGTTCCTCGCTTGATTTTAAAA
gi|11 : TGCCAGAAA-TGTTACCGTTTT-GCTAATTT-G-CATAAA-TCGCCGAATT-GGATTCCCGAACACC-AATGG--CTGAACAAA-TGG----T--TATA-AA-A----GGAAAAAAAAGATTTAAAAAAAGATTTAAC-TTT-ATTTTT---C-AT-G--C-----------T-A-CATA-CCTTGA---ATTTC----CGAA-AT--CCTAAA-----GAGAAG----TTAC----AGTCACAAGAGAA---TTTCT---GTTTTC-CCC-C--AAA--A-GT---AAT--------AAG-AT-----ATG----TA---C---GAAA-G--TGA------tgataaattttc
gi|9 : TTGCTAATT--G-CATAAA-CCGCCATATT--GGTTCCCGATCGCCAAATGG--CCGAACAAA-TGA----T--TATA-TA-ACGG-A---------------AAAAAATATTTAAAGACC-AATTTC---C-AT-G--CCATGTTACATGT-A-CATA-TCTGGA---ATCTC----TAAA-AT-TTCTAA------GAGGA-AGG-TTAAT--T--TCA-AAAAGAA------CTTTTGTTTCC-CCC-A--AAA--AAGT---AATA-------AAATATGA---TTG----TA---T---AAAA-G--TGAAGGCT-C------CA--GAAAC-AATTGAAAAA-C-CTGAA-ACAGAATCCATACATCGCCA--TCTTTC----CAATGAT--GG-CCTCAT----AG-AAAAA--GATTGC-AAAAAA-TGCCATGAAG-TAC-C-AA-CTTCAAA-A-CAA
gi|13 : tgTGGATTCCCGATCG-CAAAT-G-GCCAAATAAA-GGA----TACTGTA-TATG----G---------------AAATAATATTT-ACAACA-AATTTCATGC-TA-GGCC-----------T-A-CATA-CCGTG----ATTTC----CGAG-AT---CTAAA-----GGAGAGA---TTGCTG-TA--CACAAAA----------T---TTATCC-CCC-A--AGA--A-GT---TGTGCCATGTTAAA-AT-----ATG----TA---C---AGAA-G--TG
gi|17 : taaaccgtcaactcaataAAATATTTAAGAACC-AATTTC---C-AT-G--CATGTTACATG-T-A-CATATCTTGGA---ATCTC----TAAA-AT-TC-TAAA-----GAGGAGAGG-TTAc
gi|8 : ATATTT--CAT-T-AAT--C---CATT-G--C-----------T-A-C-AA-ACCTGA---TTTTCTTAACAAA----TCCTAAA-----GAG-AGATG-TTAAA---A-TTACAAA-GAACTTA--CT---GTTTTC-CAA-A--AGA--A-GTGGCAATA-------AAATAT-----TAA----TAAGGT---GAAGGT--TTT------T------CAGAAAAACTGA----AAAT-C-C-TGA-ATGGAAT------ATCACCA---ATTTC----CAATGAT--GGTTG-CA-----AG-AAAA---GATTG--AATA---TGCAATGAAG-TGCGC-AATTTTC-AATA-CAAGCG-T--AACAAAGATCATCTTC--T-CA----ATTATTC-TGAAA-AATCC--AAGTCCCTTTGTTGAACTGTA------AAAT-T-GTCCCA--TAAA-TAA------ACGTTGC-T-T---AC--CG-TTTTTGAT------t
gi|10 : attatTCT-AATTTC---CATT-G--C-----------T-A-C-AAACCTTGA---ATTTC----TAAA-AT--CCTAAA-----GAGGAGATG-TTAAA---A-TTACAAAAGAACT-A--CT---GTTTTC-CAA-A--AGA--A-GC---AATA-------AAATAT-----T-------A---T---AAG-----TGAAGGTT-T------CA--AGAAC-AAC-TGAAAA-T-CTGAA-ATGGAA-------ATCACCA--TCTTTC----CAATGAT--GG-TG-CAA----AG-AAAAA--GATTGC-AAAG---TGCAATGAAG-TGC-C-AA-TTTC-AA-A-CAAGCG-T--AACAA-----ATCATC--T-T--CTCATTATTTGA--AA-AATCCTAAAGT--CCTT-T---GTTG-AAACTGTAAAT-T-GTCCCA--TAAA-TAA------ACGTTGC-T-T---AC--CG-TTTTTGAT------TTTtt
gi|7 : T-G--C-----------TGA-A-TA-CTTTGA---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-TT-------------------------CT---GTTTTC-T---A--ATATTA-AT---AATG-------AAA-AT-----TTAATTATA---T---ACAA-CAGTGAAGGTT-C------CC--AGAAC--ACTTGAAAA-CAC-GAA-GCACAA-------ATC---A--CGTTTC----CAACGA---------CATTCTGAG-AAAAA--GATCGC-AAAA---TGTCACGTAG-TGT-C-AG-CTCT-AG-A-TAACCA-T--GACAA-----ATCCTC--
gi|6 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcT-G--C-----------TGA-A-TA-CTTTGA---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-TT-------------------------CT---GTTTTC-T---A--ATATTA-AT---AATG-------AAA-AT-----TTAATTATA---T---ACAA-CAGTGAAGGTT-C------CC--AGAAC--ACTTGAAAA-CAC-GAA-GCACAA-------ATC---A--CGTTTC----CAACGA---------CATTCTGAG-AAAAA--GATCGC-AAA----TGTCACGTAG-TGT-C-AG-CTCT-AG-A-TAACCA-T--GACAA-----ATCCTC--agcgcagtgcttagaaaatcatgtcttaaaatagacagagcccagtaagtaaactttgactagggctaccttttagggcattctggcttaat
gi|15 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatc-TCA-AAAAGA-------CTTTTGTTTCC-CCC-A--AAA--A-GT---AATT-------AAA-ATATTGATTG----TA---T---AAAA-G--TGAAG----C------TC--AGAAC-AAT-TGAAAC-C-T-GAA-ACAGAA-------ATCGCCATTCTTTCC----CAATGAT--GG-CT-CAT-----T-AGAAAAAGAGTGC-AAAAAAATGCCATGAAG-TAC-C-AA-CTTC-AA-AGCAAAagcgcagtgcttagaaaatcatgtcttaaaatagacaggagccagtaagtaaactttgactagggctaccttttagggcattctggctttaattt
gi|12 : tTTTT----CAATGAT--GG-CG-CAT----AT-AAAAAT--GTCGC-AAAA---TGCCATAAAG-TGC-C-AA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--TGTGCGGCATTATTC-G--AACAATCCTAAAGTAA-----T---AGTG--------AAAT-T-GTTCCATG-AG--TAA------ACGTTGC-A-A---AC--TG-TTTTTGAT------ATTCTGGCTACA-TTTTTGAA-GGTTCCTCGCTCGATTT----AAAAATGATGATT
Alignments
lowQualScore : 1 11111 1 44444444444444444444 22222222222 11111 11111 11111 222222222222222 111 22222222 33333333333333 11111111 11 1111 1111111 1111 11111 222222222 1111 11111 44444444444444444444444444444 222222 111111 1111 11111 111111 11 22222
lowQualScore : 1 4 9 3 3 6 00000 4 4 4 0 4 4 8888 55 4 4 33333333333333333333 3 555 88 2 33 66666666666 4 2 555 6666 77777 44444 2 2 555 66666 33 222222222222222 3 222 44 2 88 555 00000000 9 44444444444444 6666 2 11111111 8 3 00 3333 3 55 5555555 2 7777 7777 44 888 7777 44 777 999 0 3 3 6 3 3 3 0 4 55 00000 66 999999999 0000 00000 4 55555555555555555555555555555 4 555555 4 222222 5555 00000 4 66 4 222222 6 55 6 55555 1
lowQualScore : . . . . . . ..... . . . . . . .... .. . . .................... . ... .. . .. ........... . . ... .... ..... ..... . . ... ..... .. ............... . ... .. . .. ... ........ . .............. .... . ........ . . .. .... . .. ....... . .... .... .. ... .... .. ... ... . . . . . . . . . .. ..... .. ......... .... ..... . ............................. . ...... . ...... .... ..... . .. . ...... . .. . ..... .
lowQualScore : 6 0 9 6 6 7 00000 0 0 0 0 0 0 5555 55 0 0 99999999999999999999 3 888 55 9 99 11111111111 3 9 000 1111 66666 33333 4 9 000 66666 22 555555555555555 1 888 22 2 55 444 55555555 2 11111111111111 9999 1 77777777 6 6 66 9999 6 00 5555555 6 2222 1111 66 777 5555 66 000 222 4 3 3 7 3 3 3 3 0 55 00000 77 888888888 8888 00000 6 22222222222222222222222222222 4 888888 4 888888 6666 44444 4 11 4 888888 6 88 7 88888 0
consensus : CATTGCCAGAAA-TATTACCGTTTT-GCTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAAGA---A---C---T---GTTTTC-CNC-A--AAA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAAGTGA-AGG--T-TCCAAGAAC-AAT-TGAAAA--C-C-GAAGCGG--AA-------ATCGCCA--CNTTTC----CAATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTATTC-GA-AAAA-----TCCTAAAGT-AA--TTT-AGTG------A------AAATT-GTCCCATGTAGATA-AACG------TTG----CA----NA-C--CGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
Reference ( family-1214 ) : CATTGCCAGAAA-TATTACCGTTTTTGCTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-A-T-CACAAAAGA---A---C---T---GTTTTC-CNC-A--AAA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAANTGA-AGG--T-TCCAAGAAC-AAC-TGAAAA--C-C-GAAGCGG--AA-------ATCGCCA--CNTTTC----CAATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTATTC-GG-AAAA-----TCCTAAAGT-AA--TTT-AGTG------A------AAATT-GTCCCATGTAGATA-AACG------TTG----CA----NA-C--CGTTTTT-GAT------ATTCTGGNTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
gi|1 : CATTGCCAGAAA-TATTACCGTTTTTGATAATTT-G-CAAAAAACCACCATAT-----T-GGATTCCCGATCG-CC-AATGG--CCGAAGAAA-AGA----T--TATA-TA-A----G---------------GAAAAAAATT-AACATTTTAATTTC---C-AT-G--C-----------TAAATACCTTG-ATGAATTTC----TAAA-AT--CCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAGGG---A---CT--T---GTTTTC-CAA-AAGAAA--AGC---AGTATTTT---AAA-GTATGTATTT------TAT---AAAAGTGA-AAG--T-TTCCAGAAC-AA--TGAAAA--C-CTGAAGCGG--AT-------ATCACCA--TAATTCCATGCAGTGAT--GG-TTCAT----AGAAAAA--GATGGC--GAAA---TGCCATGAAG-TGC-CTT-CTTC-AA-A------G-------AA-----ATCT------------CATTATTT-GG-AAAA-----TCCTAAAG-------------------------------T-GTCCCATG--AACA-AACG------TTGCATACA----TA-C--CCTTTTT-TATATATACATTCTGGCTTAA--TTTCTGAA-GGTCCCTCGATTGATTC-----AAAATGAT
gi|10 : TCT-AATTTC---CATT-G--C-----------TACAAACCTTG-A---ATTTC----TAAA-AT--CCTAAA-----GAGGAGATG-T---TAAA-A-T-TACAAAAGAACTA---C---T---GTTTTC-CAA-A--AGA--AGC---AATA-------AAATAT--------------TAT-----AAGTGA-AGG--T-TTCAAGAAC-AAC-TGAAAAT-C-T-GAAATGG--AA-------ATCACCA--TCTTTC----CAATGAT--GG-TGCAA----AGAAAAA--GATTGC--AAAG---TGCAATGAAG-TGC-CAA-TTTC-AA-A-CAAGCG-T--AACAA-----ATCATC--T-T--C-TCATTATTT-GA-AAAA-----TCCTAAAGT-CC--TTT-GTTG------AAACTGTAAATT-GTCCCA--TAAATA-AACG------TTG----CT----TA-C--CGTTTTT-GAT------TTTaccccggtgaattttcaatatagaaccaaaataccatt
gi|11 : TGCCAGAAA-TGTTACCGTTTT-GCTAATTT-G-CATAAA-TCGCCGAAT-----T-GGATTCCCGAACA-CC-AAT-G-GCTGAACAAA-TGG----T--TATA-AA-A----GGAAAAAAAAGATTTAAAAAAAGATTTAAC-TTT-ATTTTT---C-AT-G--C-----------TACATACCTTG-A---ATTTC----CGAA-A--TCCTAAA-----GAGAA---G-T---TACA-G-T-CACAAGAGA---ATTTC---T---GTTTTC-CCC-C--AAA--AGT---AAT--------AAG-AT-----ATG------TAC---GAAAGTGA-
gi|12 : TTTT----CAATGAT--GG-CGCAT----ATAAAAA--TGTCGC--AAAA---TGCCATAAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--TGTGCG-GCATTATTC-GA-ACAA-----TCCTAAAGT-AA--T---AGTG------A------AA-TT-GTTCCATG-AG-TA-AACG------TTG----CA----AA-C--TGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTCGATTT----AAAAATGATGATT
gi|13 : cTAAA-CCGTCAACTCAATAT-GGATTCCCGATCG-CA-AAT-G-GCCAAATAAA-GGA----TACTGTA-TATG----G---------------AAATAATATTT-ACAACA-AATTTCATGC-TA-GGCC-----------TACATACCGTG-----ATTTC----CGAG-AT---CTAAA-----GGAGAGA---T---TGCT-G-TACACAAAA-------------T---TTATCC-CCC-A--AGA--AGT---TGTGCCATGTTAAA-AT-----ATG------TAC---AGAAGTG
gi|14 : ATTGC-AGAAA-TATTACCAGTTTTGCTAATTT-G-CATAAA-CCGCCATGT-----T-GGA-TCCCGATCGTCT-AATGGCGCAGA--AAA-GGA----T--TATAGTA-A----G----------------AAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------CAC-TACTGTG-A---ATTTC----CAAA-A--TCCTAAA-----GGGGAGACG-T---TACT-C-T----AAAAGA---A---T---T---c
gi|15 : CAAAAAG---A---C---TTTTGTTTCC-CCC-A--AAA--AGT---AATT-------AAA-ATATTGATTG------TAT---AAAAGTGA-AG---C-TC--AGAAC-AAT-TGAAAC--C-T-GAAACAG--AA-------ATCGCCATTCTTTCC----CAATGAT--GG-CTCATT---AGAAAAA--GAGTGC--AAAAAAATGCCATGAAG-TAC-CAA-CTTC-AA-AGCAAAt
gi|16 : ttATTGCCAGAAA-TATTACCGTTTT-GCTAATTT-G-CATAAT-CCGCCATGT-----T-AGATTCCCAATCG-CC-AAT-G-GCCGAACAAA-GGA----T--TATA-TA-A----
gi|17 : AAATATTTAAGAACC-AATTTC---C-AT-G--CATGTTACATG-TACATATCTTGGA---ATCTC----TAAA-AT-TC-TAAA-----GAGGAGAGG-T---TA
gi|2 : TTGCCAGAAAATATTAC-GTTTT-GCTAATTTTG-CATAATTCCGCCATGT-----T-AGATTCCCAATCG-CC-AATGG-ACCGAACAAA-GGA----T--TATA-TA-A----GG--------------AAAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------TAC-TACTTTG-A---ATTTC----CAAA-A--TCCT-AA-----GAGGAGACG-TTAATACT-ATT-CACAAAAGA---CTTTC---T---GTTTTCTCGCAA--AAA--AGT---AAT--------TAA-AT-----TTA------TATTAAAAAATTGACAGG--TATCC-AGAAC-AAT-TAAAAA--T-C-CGAGTGGGAAA-------ATCGCCA--CATTTC----CAATGATTGAG-CGCAT----ATCAAAA--G-TCGC-----A---TGCCATAAAGTTGC-CAA-CTTC-AA-A-CAAACGAT--AGCAA-----ATCTTC----TA-G-GCATTATTC-GA-AAAA-----TCCTATAGTAAA--TTG-AGTG------A------ATCTG-GTCCCATG-AG-TATAACGCCCCCCTTG----CA----AA-CTGTGTTTTT-GAT------ATTCTGG-TACATTTTTTTGAA-GGTTCCTCGCTTGATTT----TAAAATGATAt
gi|3 : CATTGCCAGAAA-TATTACCGTTTTTGCTAATTT-G-CATAAT-CCGCCATGT-----TTGGATTCCCGATCG-CCCAATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-GATTTC---C-TT-G--C-----------TAC-TACTTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACTTA-T-CACAAAAGA---AG--C---T---GTTTTC-CGC-A--AAA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAATTGA---------CCAAGAACTAATATAAAAA--C-C-GAGGCGG--AA-------ATCGCCA--CATTTC----CAATGAT--GG-CGCAT----ATAAAAACCGGTCGC--AAAA---TGCCATGAAA-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTATTC--C-AAAA-----TCCGAAAGT-AAATTTT-AGTG------A------AAATTGGTCCCATGTAGTTA-AAC-------TTG----CA----AA-C--TGTTTTT-GAT------ATTCTAGGTACAT-TTTTTGAAGGGTTCCTCGCTTGATTTTAAAAAAAATGATCATTattttc
gi|4 : CATTGCCAAA-----TTACCGTTTTGGCTAATTT-GGCATAAT-CCGC-ATGT-----T-GGATTCCCGATCG-CC-AA--G-GCCGAACAAAAGGA----T--T-TA-TA-ATAAGG---------------AAAAAATATTTAACATCT-GATTTC---C-TTTG--C-----------TAACTACTTTG-A---ATTTC----CAAA-AT--CCTAAA-----GAGGAGACGGT---TATT-----CACAAAAGA---A---C---T---GTTTTC-CGC-A--AAA--AGT-----TA-------AAA-TT-----TCA------TAT---AAAATTG----------CCAAGACA-AAT-TAAAAA--T-C-CGAGCGG--A---------TCGCC---CATT-C----CAATGAT--GG-CGCAT----ATAAAAA--CGTCGC--AAAAA--TGCAATGAAG-TGC-CAAACTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T--A-G-GCATTATTC-CATAAAA-----TCC-GAAGT-AA--TTTTAGTG------A------AA-TT-GTCCCATG-AGTTA-A-CG------TTG----CA----AAAC--TGTTTTTTGAT------ATTCTAGGTACA--TTTTTGAA-GGTTCCTCGCTTGATTT-----AAAATGATCATT
gi|5 : ATTGCCAGAAA-TATTACAATTTT-GCTAATTT-C-AACAAA-CCACCATAT-----T-AAATTCCCCATCG-TG-AATGG-TC-----AAA-GGAAAATT--TGTA-TA-A----GG--------------AAAAAATATTAAACTTCT-TATTTG---A-A--G--C-----------TAAGTGCCTTG-A---ATTTC----TAAT-AT--CCTAAT-----CAGGAGATG-T---TACA-G-T-CGCAAAAGA---A---C---TTAAGTTC-C-CTC-A--A-----GC---AATA-------ACA--T-----ATG------TAT----------------------AAAAA------TGAA----T-T-GAAG---------------TCACCA--GCTTTT----CAAAGAT--GG-TTCAA----AGAAAAA---ATCG-----------GT-ATGAAG-TGT-CAA-CTTC-AA-A-CAAACA-TAAAAAAA-----ATCATCCGT-T-----CATTATTT-GA-ACAA-----TCCTAAAGT-AA--TCT-AGT-------A------CAATT-ATCTCA--TAAATA-AGCG------TTG----CA----TG-C--CG-TTTT-GAT------ATTCTGTTTAAA---TTTCGAA-G-------GCTTGATTT----AAAAATGATGACT
gi|6 : CATAGCCA-AAA-TATTACCATTCG-GCTAATTT-G-CATAAA-TCGtgggtgaattttaacttataagacctatagtaccatt
gi|6 : taT-G--C-----------TGAATACTTTG-A---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-T---T------------------------C---T---GTTTTC-T---A--ATATTAAT---AATG-------AAA-AT-----TTAATTATATAC---AACAGTGA-AGG--T-TCCCAGAAC-ACT-TGAAAA--CAC-GAAGCAC--AA-------AT---CA--CGTTTC----CAACGA--------CATTCTGAGAAAAA--GATCGC---AAA---TGTCACGTAG-TGT-CAG-CTCT-AG-A-TAACCA-T--GACAA-----ATC--C--T-CA-GCGCAGTGCTT-AG-AAAA-----TCttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacaggagccagtaagtaaactttgactagggctaccttttagggcattctggctttaattt
gi|7 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcCATAGCCA-AAA-TATTACCATTCG-GCTAATTT-G-CATAAA-TCGatgtcttaaaatagacaggagccagtaagtaaactttgactagggctaccttttagggcattctggctttaattt
gi|7 : taT-G--C-----------TGAATACTTTG-A---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-T---T------------------------C---T---GTTTTC-T---A--ATATTAAT---AATG-------AAA-AT-----TTAATTATATAC---AACAGTGA-AGG--T-TCCCAGAAC-ACT-TGAAAA--CAC-GAAGCAC--AA-------ATC---A--CGTTTC----CAACGA--------CATTCTGAGAAAAA--GATCGC--AAAA---TGTCACGTAG-TGT-CAG-CTCT-AG-A-TAACCA-T--GACAA-----ATC--C--T-CA-GCGCAGTGCTT-AG-AAAATCATGTCTTAAAAT-A----------G------AC-----AGA---G-CCCA-GTAAGTA-AACT------TTGAC--TAGGGCTA-C--CTTTTAG-GGC------ATTCTGGCTttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacagagcccagtaagtaaactttgactagggctaccttttagggcattctggcttaat
gi|8 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcATATTT--CAT-T-AAT--C---CATT-G--C-----------TACAAACCT-G-A---TTTTCTTAACAAA----TCCTAAA-----GAG-AGATG-T---TAAA-A-T-TACAAAGAACTTA---C---T---GTTTTC-CAA-A--AGA--AGTGGCAATA-------AAATAT-----TAA------T------AAGGTGA-AGGTTT-TTC-AGAAA-AAC-TGAAAAT-C-C-TGAATGG--AAT------ATCACCA---ATTTC----CAATGAT--GGTTGCA-----AG-AAAA--GATTG---AATA---TGCAATGAAG-TGCGCAATTTTC-AATA-CAAGCG-T--AACAAAGATCATCTTC--T-CA-----ATTATTCTGA-AAAA-----TCC--AAGTCCC--TTT-GTTGAACTGTA------AAATT-GTCCCA--TAAATA-AACG------TTG----CT----TA-C--CGTTTTT-GAT------taat
gi|9 : attatTTGCTAATT--G-CATAAA-CCGCCATAT-----T-GG-TTCCCGATCG-CC-AAATG-GCCGAACAAA-TGA----T--TATA-TA-ACGG-A---------------AAAAAATATTTAAAGACC-AATTTC---C-AT-G--CCATGTTACATGTACATATCTGG-A---ATCTC----TAAA-AT-TTCT-AA-----GAGGA-AGG-T---TAAT-T-T-CA-AAAAGA---A---CTTTT---GTTTCC-CCCAA--AAA--AGT---AATA-------AAATATGA---TTG------TAT---AAAAGTGA-AGG--C-TCCAGAAAC-AAT-TGAAAAACC-T-GAAACAG--AATCCATACATCGCCA--TCTTTC----CAATGAT--GGCCTCAT----AGAAAAA--GATTGCAAAAAA---TGCCATGAAG-TAC-CAA-CTTCAAA-A-CAAtt
Alignments
lowQualScore : 11111 1 44444444444444444444 11 22222222222 11111 11111 11111 222222222222222 111 22222222 33333333333333 1111111 1111111 1111 11111 222222222 55555555555555555555555555 11111 222222 111111 22222222222 111111 11 22222
lowQualScore : 1 4 4 7 3 3 3 6 00000 4 4 4 0 4 4 8888 55 4 4 33333333333333333333 3 555 00 2 33 66666666666 4 2 555 6666 77777 44444 2 2 555 66666 33 222222222222222 3 222 444 88 555 44444444 9 44444444444444 555 999999999999 3 3 7777777 1 55 5555555 2 7777 7777 44 888 7777 44 777 999 3 3 6 3 3 3 0 4 55 00000 66 999999999 4 4 4 8888 3 55555555555555555555555555 0 4 00000 555555 4 111111 66666666666 4 55 4 111111 4 55 6 55555 1
lowQualScore : . . . . . . . . ..... . . . . . . .... .. . . .................... . ... .. . .. ........... . . ... .... ..... ..... . . ... ..... .. ............... . ... ... .. ... ........ . .............. ... ............ . . ....... . .. ....... . .... .... .. ... .... .. ... ... . . . . . . . . .. ..... .. ......... . . . .... . .......................... . . ..... ...... . ...... ........... . .. . ...... . .. . ..... .
lowQualScore : 6 0 0 3 6 6 6 7 00000 0 0 0 0 0 0 5555 55 0 0 11111111111111111111 3 888 44 9 99 11111111111 3 9 000 1111 66666 33333 4 9 000 22222 22 555555555555555 1 888 555 55 444 33333333 2 11111111111111 444 111111111111 6 6 8888888 2 00 5555555 6 2222 1111 66 777 5555 66 000 222 3 3 7 3 3 3 3 0 55 00000 77 888888888 0 0 0 5555 2 99999999999999999999999999 7 0 00000 666666 0 555555 99999999999 0 55 0 555555 5 88 7 88888 0
consensus : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAAGA---A---C---T---GTTTTC-CNC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAA--C-C--GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC-GA-AAA----ATCCTAAAGT-AA--TTT-AGTG------A------AAATT-GTC-----CCATGTAAATA-AACG------TTG----CA----TA-C--CGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
Reference ( family-1214 ) : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAAGA---A---C---T---GTTTTC-CNC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAA--C-C--GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC-GA-AAA----ATCCTAAAGT-AA--TTT-AGTG------A------AAATT-GTC-----CCATGTAGATA-AACG------TTG----CA----NA-C--CGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
gi|1 : CATTGCCAGAAA-TATTACC-GTTTTTG-ATAATTT-G-CAAAAAACCACCATAT-----T-GGATTCCCGATCG-CC-AATGG--CCGAAGAAA-AGA----T--TATA-TA-A----G---------------GAAAAAAATT-AACATTTTAATTTC---C-AT-G--C-----------TAAATACCTTG-ATGAATTTC----TAAA-AT--CCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAGGG---A---C---TT--GTTTTC-CAA-AAGAAA--AGC---AGTATTTT---AAA-GTATGTATTT------TAT---AAAAGTGA-AAGT-TT--CCAGAAC-AAT--GAAAA--C-CT-GAAGCGG--AT-------ATCACCA--TAATTCCATGCAGTGAT--GG-TTCAT----AGAAAAA--GATGGC--GAAA---TGCCATGAAG-TGC-CTT-CTTC-AA-A------G-------AA-----ATCT------------CATTA-TTT-GG-AAA----ATCCTAAAG-------------------------------T-GTC-----CCATG--AACA-AACG------TTGCATACA----TA-C--CCTTTTT-TATATATACATTCTGGCTTAA--TTTCTGAA-GGTCCCTCGATTGATTC-----AAAATGAT
gi|10 : TCT-AATTTC---CATT-G--C-----------TACAAACCTTG-A---ATTTC----TAAA-AT--CCTAAA-----GAGGAGATG-T---TAAA-A-T-TACAAAAGAACTA---C---T---GTTTTC-CAA-AA--GA--AGC---AATA-------AAATAT--------------TAT-----AAGTGA-AGGT-TT--CAAGAAC-AAC-TGAAAAT-C-T--GAAATGG--AA-------ATCACCA--TCTTTCCA----ATGAT--GG-TGCAA----AGAAAAA--GATTGC--AAAG---TGCAATGAAG-TGC-CAA-TTTC-AA-A-CAAGCG-T--AACAA-----ATCATC--T-T--C-TCATTA-TTT-GA-AAA----ATCCTAAAGT-CC--TTT-GTTG------AAACTGTAAATT-GTC-----CCA--TAAATA-AACG------TTG----CT----TA-C--CGTTTTT-GAT------TTTaccccggtgaattttcaatatagaaccaaaataccatt
gi|11 : TGCCAGAAA-TGTTACC-GTTTT-G-CTAATTT-G-CATAAA-TCGCCGAAT-----T-GGATTCCCGAACA-CC-AAT-G-GCTGAACAAA-TGG----T--TATA-AA-A----GGAAAAAAAAGATTTAAAAAAAGATTTAAC-TTT-ATTTTT---C-AT-G--C-----------TACATACCTTG-A---ATTTC----CGAA-A--TCCTAAA-----GAGAA---G-T---TACA-G-T-CACAAGAGA---ATTTC---T---GTTTTC-CCC-CA--AA--AGT---AAT--------AAG-AT-----ATG------TAC---GAAAGTGA-
gi|12 : TTTTCA----ATGAT--GG-CGCAT----ATAAAAA--TGTCGC--AAAA---TGCCATAAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--TGTGCG-GCATTA-TTC-GA-ACA----ATCCTAAAGT-AA----T-AGTG-------------AAATT-GTT-----CCATG-AG-TA-AACG------TTG----CA----AA-C--TGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTCGATTT----AAAAATGATGATT
gi|13 : cTAAA-CCGTCAACTCAATAT-GGATTCCCGATCG-CA-AAT-G-GCCAAATAAA-GGA----TACTGTA-TATG----G---------------AAATAATATTT-ACAACA-AATTTCATGC-TA-GGCC-----------TACATACCGTG-----ATTTC----CGAG-AT---CTAAA-----GGAGAGA---T---TGCT-G-TACACAAAA-------------T---TTATCC-CCC-AA--GA--AGT---TGTGCCATGTTAAA-AT-----ATG------TAC---AGAAGTG
gi|14 : ATTGC-AGAAA-TATTACCAGTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGA-TCCCGATCGTCT-AATGGCGCAGA--AAA-GGA----T--TATAGTA-A----G----------------AAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------CAC-TACTGTG-A---ATTTC----CAAA-A--TCCTAAA-----GGGGAGACG-T---TACT-C-T----AAAAGA---A---T---T---c
gi|15 : CAAAAAG---A---C---TTTTGTTTCC-CCC-AA--AA--AGT---AATT-------AAA-ATATTGATTG------TAT---AAAAGTGA-AG-C-TC----AGAAC-AAT-TGAAAC--C-T--GAAACAG--AA-------ATCGCCATTCTTTCCCA----ATGAT--GG-CTCATT---AGAAAAA--GAGTGC--AAAAAAATGCCATGAAG-TAC-CAA-CTTC-AA-AGCAAAt
gi|16 : ttATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAT-CCGCCATGT-----T-AGATTCCCAATCG-CC-AAT-G-GCCGAACAAA-GGA----T--TATA-TA-A----
gi|17 : AAATATTTAAGAACC-AATTTC---C-AT-G--CATGTTACATG-TACATATCTTGGA---ATCTC----TAAA-AT-TC-TAAA-----GAGGAGAGG-T---TA
gi|2 : TTGCCAGAAAATATTAC--GTTTT-G-CTAATTTTG-CATAATTCCGCCATGT-----T-AGATTCCCAATCG-CC-AATGG-ACCGAACAAA-GGA----T--TATA-TA-AG---G---------------AAAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------TAC-TACTTTG-A---ATTTC----CAAA-A--TCCT-AA-----GAGGAGACG-TTAATACT-ATT-CACAAAAGA---CTTTC---T---GTTTTCTCGCAAA--AA--AGT---AAT--------TAA-AT-----TTA------TATTAAAAAATTGACAGGTATC--C-AGAAC-AAT-TAAAAA--T-C--CGAGTGGGAAA-------ATCGCCA--CATTTCCA----ATGATTGAG-CGCAT----ATCAAAA--G-TCGC-----A---TGCCATAAAGTTGC-CAA-CTTC-AA-A-CAAACGAT--AGCAA-----ATCTTC----TA-G-GCATTA-TTC-GA-AAA----ATCCTATAGTAAA--TTG-AGTG------A------ATCTG-GTC-----CCATG-AG-TATAACGCCCCCCTTG----CA----AA-CTGTGTTTTT-GAT------ATTCTGG-TACATTTTTTTGAA-GGTTCCTCGCTTGATTT----TAAAATGATAt
gi|3 : CATTGCCAGAAA-TATTACC-GTTTTTG-CTAATTT-G-CATAAT-CCGCCATGT-----TTGGATTCCCGATCG-CCCAATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-GATTTC---C-TT-G--C-----------TAC-TACTTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACTTA-T-CACAAAAGA---AG--C---T---GTTTTC-CGC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAATTGA-------C--CAAGAACTAATATAAAAA--C-C--GAGGCGG--AA-------ATCGCCA--CATTTCCA----ATGAT--GG-CGCAT----ATAAAAACCGGTCGC--AAAA---TGCCATGAAA-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC--C-AAA----ATCCGAAAGT-AAATTTT-AGTG------A------AAATTGGTC-----CCATGTAGTTA-AAC-------TTG----CA----AA-C--TGTTTTT-GAT------ATTCTAGGTACAT-TTTTTGAAGGGTTCCTCGCTTGATTTTAAAAAAAATGATCATTattttc
gi|4 : CATTGCCAAA-----TTACC-GTTTT-GGCTAATTT-GGCATAAT-CCGC-ATGT-----T-GGATTCCCGATCG-CC-AA--G-GCCGAACAAAAGGA----T--T-TA-TA-ATAAGG---------------AAAAAATATTTAACATCT-GATTTC---C-TTTG--C-----------TAACTACTTTG-A---ATTTC----CAAA-AT--CCTAAA-----GAGGAGACGGT---TATT-----CACAAAAGA---A---C---T---GTTTTC-CGC-AA--AA--AGT-----TA-------AAA-TT-----TCA------TAT---AAAATTG--------C--CAAGACA-AAT-TAAAAA--T-C--CGAGCGG--A---------TCGCC---CATT-CCA----ATGAT--GG-CGCAT----ATAAAAA--CGTCGC--AAAAA--TGCAATGAAG-TGC-CAAACTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T--A-G-GCATTA-TTC-CATAAA----ATCC-GAAGT-AA--TTTTAGTG------A------AA-TT-GTC-----CCATG-AGTTA-A-CG------TTG----CA----AAAC--TGTTTTTTGAT------ATTCTAGGTACA--TTTTTGAA-GGTTCCTCGCTTGATTT-----AAAATGATCATT
gi|5 : ATTGCCAGAAA-TATTACA-ATTTT-G-CTAATTT-C-AACAAA-CCACCATAT-----T-AAATTCCCCATCG-TG-AATGG-T-----CAAA-GGAAAATT--TGTA-TA-AG---G---------------AAAAAATATTAAACTTCT-TATTTG---A--A-G--C-----------TAAGTGCCTTG-A---ATTTC----TAAT-A--TCCTAAT-----CAGGAGATG-T---TACA-G-T-CGCAAAAGA---A---C---TTAAG-TTCC-CTC------A--AGC---AAT--------AAC-AT-----ATG------TAT---AAAAATG-------------------AAT-TG--------------------AA-------GTCACCA--GCTTTTCA----AAGAT--GG-TTCAA----AGAAAAA---ATCG-----------G-TATGAAG-TGT-CAA-CTTC-AA-A-CAAACA-TAAAAAAA-----ATCATCCGT-T-----CATTA-TTT-GA-ACA----ATCCTAAAGT-AA--TCT-AGT-------A------CAATT-ATC-----TCA--TAAATA-AGCG------TTG----CA----TG-C--CG-TTTT-GAT------ATTCTGTTTAAA---TTTCGAA-G-------GCTTGATTT----AAAAATGATGACT
gi|6 : CATAGCCA-AAA-TATTACC-ATTCG-G-CTAATTT-G-CATAAA-TCGtgggtgaattttaacttataagacctatagtaccatt
gi|6 : taT-G--C-----------TGAATACTTTG-A---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-T---T------------------------C---T---GTTTTC-T---AA--TATTAAT---AATG-------AAA-AT-----TTAATTATATAC---AACAGTGA-AGGT-TC--CCAGAAC-ACT-TGAAAA--CAC--GAAGCAC--AA-------AT---CA--CGTTTCCA----ACGA--------CATTCTGAGAAAAA--GATCGC---AAA---TGTCACGTAG-TGT-CAG-CTCT-AG-A-TAACCA-T--GACAA-----ATC--C--T-CA-GCGCAGTG-CTT-AG-AAA----ATCAT---GT-----CTT-----------A------AAATA-GACAGGAGCCA-GTAAGTA-AACT------TTGAC--TAGGGCTA-C--CTTTTAG-GGC------ATTCTGGCTttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacaggagccagtaagtaaactttgactagggctaccttttagggcattctggctttaattt
gi|7 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcCATAGCCA-AAA-TATTACC-ATTCG-G-CTAATTT-G-CATAAA-TCGttaattt
gi|7 : taT-G--C-----------TGAATACTTTG-A---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-T---T------------------------C---T---GTTTTC-T---AA--TATTAAT---AATG-------AAA-AT-----TTAATTATATAC---AACAGTGA-AGGT-TC--CCAGAAC-ACT-TGAAAA--CAC--GAAGCAC--AA-------ATC---A--CGTTTCCA----ACGA--------CATTCTGAGAAAAA--GATCGC--AAAA---TGTCACGTAG-TGT-CAG-CTCT-AG-A-TAACCA-T--GACAA-----ATC--C--T-CA-GCGCAGTGCTTA-GA-AAATCATGTCTTAAAAT-A----------G------AC-----AGA---G-C-----CCA-GTAAGTA-AACT------TTGAC--TAGGGCTA-C--CTTTTAG-GGC------ATTCTGGCTttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacagagcccagtaagtaaactttgactagggctaccttttagggcattctggcttaat
gi|8 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcATATTT--CAT-T-AAT--C---CATT-G--C-----------TACAAACCT-G-A---TTTTCTTAACAAA----TCCTAAA-----GAG-AGATG-T---TAAA-A-T-TACAAAGAACTTA---C---T---GTTTTC-CAA-AA--GA--AGTGGCAATA-------AAATAT-----TAA------TA------AGGTGA-AGGT-TTTTCA-GAAA-AAC-TGAAAA--T-CCTGAA-TGG--AAT------ATCACCA---ATTTCCA----ATGAT--GGTTGCA-----AG-AAAA--GATTG---AATA---TGCAATGAAG-TGCGCAATTTTC-AATA-CAAGCG-T--AACAAAGATCATCTTC--T-CA-----ATTA-TTCTGA-AAA----ATCC--AAGTCCC--TTT-GTTGAACTGTA------AAATT-GTC-----CCA--TAAATA-AACG------TTG----CT----TA-C--CGTTTTT-GAT------taat
gi|9 : attatTT-G-CTAATT--G-CATAAA-CCGCCATAT-----T-GG-TTCCCGATCG-CC-AAATG-GCCGAACAAA-TGA----T--TATA-TA-ACGG-A---------------AAAAAATATTTAAAGACC-AATTTC---C-AT-G--CCATGTTACATGTACATATCTGG-A---ATCTC----TAAA-AT-TTCT-AA-----GAGGA-AGG-T---TAAT-T-T-CA-AAAAGA---A---CTTTT---GTTTCC-CCCAAA--AA--AGT---AATA-------AAATATGA---TTG------TAT---AAAAGTGA-AGGC-TC--CAGAAAC-AAT-TGAAAAACC-T--GAAACAG--AATCCATACATCGCCA--TCTTTCCA----ATGAT--GGCCTCAT----AGAAAAA--GATTGCAAAAAA---TGCCATGAAG-TAC-CAA-CTTCAAA-A-CAAtt
Alignments
lowQualScore : 11111 1 44444444444444444444 22222222222 11111 11111 11111 222222222222222 111 22222222 33333333333333 111111111111 1111111 1111111 1111 11111 222222222 55555555555555555555555555 11111 2222 111111 22222222222 111111 11 22222
lowQualScore : 1 4 4 7 3 3 3 6 00000 4 4 4 0 4 4 8888 55 4 4 33333333333333333333 3 555 88 2 33 66666666666 4 2 555 6666 77777 44444 2 2 555 66666 33 222222222222222 3 222 666 88 555 00000000 9 44444444444444 555 111111111111 3 3 7777777 1 55 5555555 2 7777 7777 44 888 7777 44 777 999 0 3 3 6 3 3 3 0 4 55 00000 66 999999999 4 4 4 8888 3 11111111111111111111111111 6666 00000 4444 1 4 111111 77777777777 4 55 4 111111 4 55 6 55555 1
lowQualScore : . . . . . . . . ..... . . . . . . .... .. . . .................... . ... .. . .. ........... . . ... .... ..... ..... . . ... ..... .. ............... . ... ... .. ... ........ . .............. ... ............ . . ....... . .. ....... . .... .... .. ... .... .. ... ... . . . . . . . . . .. ..... .. ......... . . . .... . .......................... .... ..... .... . . ...... ........... . .. . ...... . .. . ..... .
lowQualScore : 6 0 0 3 6 6 6 7 00000 0 0 0 0 0 0 5555 55 0 0 55555555555555555555 3 888 55 9 99 11111111111 3 9 000 1111 66666 33333 4 9 000 22222 22 555555555555555 1 888 555 55 444 55555555 2 11111111111111 444 333333333333 6 6 8888888 2 00 5555555 6 2222 1111 66 777 5555 66 000 222 4 3 3 7 3 3 3 3 0 55 00000 77 888888888 0 0 0 5555 2 00000000000000000000000000 3333 00000 2222 1 0 555555 33333333333 0 55 0 555555 5 88 7 88888 0
consensus : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAAGA---A---C---T---GTTTTC-CNC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAA--C-C--GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC-GA-AAA----ATCCTAAAGT-AA--TTT-AGTG------A------AAATT-GTC-----CCATGTAAGTA-AACG------TTG----CA----TA-C--CGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
Reference ( family-1214 ) : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAAGA---A---C---T---GTTTTC-CNC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAA--C-C--GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC-GA-AAA----ATCCTAAAGT-AA--TTT-AGTG------A------AAATT-GTC-----CCATGTAAATA-AACG------TTG----CA----TA-C--CGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
gi|1 : CATTGCCAGAAA-TATTACC-GTTTTTG-ATAATTT-G-CAAAAAACCACCATAT-----T-GGATTCCCGATCG-CC-AATGG--CCGAAGAAA-AGA----T--TATA-TA-A----G---------------GAAAAAAATT-AACATTTTAATTTC---C-AT-G--C-----------TAAATACCTTG-ATGAATTTC----TAAA-AT--CCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAGGG---A---C---TT--GTTTTC-CAA-AAGAAA--AGC---AGTATTTT---AAA-GTATGTATTT------TAT---AAAAGTGA-AAGT-TT--CCAGAAC-AAT--GAAAA--C-CT-GAAGCGG--AT-------ATCACCA--TAATTCCATGCAGTGAT--GG-TTCAT----AGAAAAA--GATGGC--GAAA---TGCCATGAAG-TGC-CTT-CTTC-AA-A------G-------AA-----ATCT------------CATTA-TTT-GG-AAA----ATCCTAAAG-------------------------------T-GTC-----CCATG--AACA-AACG------TTGCATACA----TA-C--CCTTTTT-TATATATACATTCTGGCTTAA--TTTCTGAA-GGTCCCTCGATTGATTC-----AAAATGAT
gi|10 : TCT-AATTTC---CATT-G--C-----------TACAAACCTTG-A---ATTTC----TAAA-AT--CCTAAA-----GAGGAGATG-T---TAAA-A-T-TACAAAAGAACTA---C---T---GTTTTC-CAA-AA--GA--AGC---AATA-------AAATAT--------------TAT-----AAGTGA-AGGT-TT--CAAGAAC-AAC-TGAAAAT-C-T--GAAATGG--AA-------ATCACCA--TCTTTCCA----ATGAT--GG-TGCAA----AGAAAAA--GATTGC--AAAG---TGCAATGAAG-TGC-CAA-TTTC-AA-A-CAAGCG-T--AACAA-----ATCATC--T-T--C-TCATTA-TTT-GA-AAA----ATCCTAAAGT-CC--TTT-GTTG------AAACTGTAAATT-GTC-----CCA--TAAATA-AACG------TTG----CT----TA-C--CGTTTTT-GAT------TTTaccccggtgaattttcaatatagaaccaaaataccatt
gi|11 : TGCCAGAAA-TGTTACC-GTTTT-G-CTAATTT-G-CATAAA-TCGCCGAAT-----T-GGATTCCCGAACA-CC-AAT-G-GCTGAACAAA-TGG----T--TATA-AA-A----GGAAAAAAAAGATTTAAAAAAAGATTTAAC-TTT-ATTTTT---C-AT-G--C-----------TACATACCTTG-A---ATTTC----CGAA-A--TCCTAAA-----GAGAA---G-T---TACA-G-T-CACAAGAGA---ATTTC---T---GTTTTC-CCC-CA--AA--AGT---AAT--------AAG-AT-----ATG------TAC---GAAAGTGA-
gi|12 : TTTTCA----ATGAT--GG-CGCAT----ATAAAAA--TGTCGC--AAAA---TGCCATAAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--TGTGCG-GCATTA-TTC-GA-ACA----ATCCTAAAGT-AA--T---AGTG------A------AA-TT-GTT-----CCATG--AGTA-AACG------TTG----CA----AA-C--TGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTCGATTT----AAAAATGATGATT
gi|13 : cTAAA-CCGTCAACTCAATAT-GGATTCCCGATCG-CA-AAT-G-GCCAAATAAA-GGA----TACTGTA-TATG----G---------------AAATAATATTT-ACAACA-AATTTCATGC-TA-GGCC-----------TACATACCGTG-----ATTTC----CGAG-AT---CTAAA-----GGAGAGA---T---TGCT-G-TACACAAAA-------------T---TTATCC-CCC-AA--GA--AGT---TGTGCCATGTTAAA-AT-----ATG------TAC---AGAAGTG
gi|14 : ATTGC-AGAAA-TATTACCAGTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGA-TCCCGATCGTCT-AATGGCGCAGA--AAA-GGA----T--TATAGTA-A----G----------------AAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------CAC-TACTGTG-A---ATTTC----CAAA-A--TCCTAAA-----GGGGAGACG-T---TACT-C-T----AAAAGA---A---T---T---c
gi|15 : CAAAAAG---A---C---TTTTGTTTCC-CCC-AA--AA--AGT---AATT-------AAA-ATATTGATTG------TAT---AAAAGTGA-AG-C-TC----AGAAC-AAT-TGAAAC--C-T--GAAACAG--AA-------ATCGCCATTCTTTCCCA----ATGAT--GG-CTCATT---AGAAAAA--GAGTGC--AAAAAAATGCCATGAAG-TAC-CAA-CTTC-AA-AGCAAAt
gi|16 : ttATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAT-CCGCCATGT-----T-AGATTCCCAATCG-CC-AAT-G-GCCGAACAAA-GGA----T--TATA-TA-A----
gi|17 : AAATATTTAAGAACC-AATTTC---C-AT-G--CATGTTACATG-TACATATCTTGGA---ATCTC----TAAA-AT-TC-TAAA-----GAGGAGAGG-T---TA
gi|2 : TTGCCAGAAAATATTAC--GTTTT-G-CTAATTTTG-CATAATTCCGCCATGT-----T-AGATTCCCAATCG-CC-AATGG-ACCGAACAAA-GGA----T--TATA-TA-AG---G---------------AAAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------TAC-TACTTTG-A---ATTTC----CAAA-A--TCCT-AA-----GAGGAGACG-TTAATACT-ATT-CACAAAAGA---CTTTC---T---GTTTTCTCGCAAA--AA--AGT---AAT--------TAA-AT-----TTA------TATTAAAAAATTGACAGGTATC--C-AGAAC-AAT-TAAAAA--T-C--CGAGTGGGAAA-------ATCGCCA--CATTTCCA----ATGATTGAG-CGCAT----ATCAAAA--G-TCGC-----A---TGCCATAAAGTTGC-CAA-CTTC-AA-A-CAAACGAT--AGCAA-----ATCTTC----TA-G-GCATTA-TTC-GA-AAA----ATCCTATAGTAAA--TTG-AGTG------A------ATCTG-GTC-----CCATG--AGTATAACGCCCCCCTTG----CA----AA-CTGTGTTTTT-GAT------ATTCTGG-TACATTTTTTTGAA-GGTTCCTCGCTTGATTT----TAAAATGATAt
gi|3 : CATTGCCAGAAA-TATTACC-GTTTTTG-CTAATTT-G-CATAAT-CCGCCATGT-----TTGGATTCCCGATCG-CCCAATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-GATTTC---C-TT-G--C-----------TAC-TACTTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACTTA-T-CACAAAAGA---AG--C---T---GTTTTC-CGC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAATTGA-------C--CAAGAACTAATATAAAAA--C-C--GAGGCGG--AA-------ATCGCCA--CATTTCCA----ATGAT--GG-CGCAT----ATAAAAACCGGTCGC--AAAA---TGCCATGAAA-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC--C-AAA----ATCCGAAAGT-AAATTTT-AGTG------A------AAATTGGTC-----CCATGTAGTTA-AAC-------TTG----CA----AA-C--TGTTTTT-GAT------ATTCTAGGTACAT-TTTTTGAAGGGTTCCTCGCTTGATTTTAAAAAAAATGATCATTattttc
gi|4 : CATTGCCAAA-----TTACC-GTTTT-GGCTAATTT-GGCATAAT-CCGC-ATGT-----T-GGATTCCCGATCG-CC-AA--G-GCCGAACAAAAGGA----T--T-TA-TA-ATAAGG---------------AAAAAATATTTAACATCT-GATTTC---C-TTTG--C-----------TAACTACTTTG-A---ATTTC----CAAA-AT--CCTAAA-----GAGGAGACGGT---TATT-----CACAAAAGA---A---C---T---GTTTTC-CGC-AA--AA--AGT-----TA-------AAA-TT-----TCA------TAT---AAAATTG--------C--CAAGACA-AAT-TAAAAA--T-C--CGAGCGG--A---------TCGCC---CATT-CCA----ATGAT--GG-CGCAT----ATAAAAA--CGTCGC--AAAAA--TGCAATGAAG-TGC-CAAACTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T--A-G-GCATTA-TTC-CATAAA----ATCC-GAAGT-AA--TTTTAGTG------A------AA-TT-GTC-----CCATG--AGTT-AACG------TTG----CA----AAAC--TGTTTTTTGAT------ATTCTAGGTACA--TTTTTGAA-GGTTCCTCGCTTGATTT-----AAAATGATCATT
gi|5 : ATTGCCAGAAA-TATTACA-ATTTT-G-CTAATTT-C-AACAAA-CCACCATAT-----T-AAATTCCCCATCG-TG-AATGG-TC-----AAA-GGAAAATT--TGTA-TA-A----GG--------------AAAAAATATTAAACTTCT-TATTTG---A-A--G--C-----------TAAGTGCCTTG-A---ATTTC----TAAT-AT--CCTAAT-----CAGGAGATG-T---TACA-G-T-CGCAAAAGA---A---C---TTAAGTTC-C-CTC-AA-------GC---AATA-------ACA--T-----ATG------TAT---AAAAATGA-------------------AT-TGAAG---------------------------TCACCA--GCTTTTCA----AAGAT--GG-TTCAA----AGAAAAA---ATCG-----------GT-ATGAAG-TGT-CAA-CTTC-AA-A-CAAACA-TAAAAAAA-----ATCATCCGT-T-----CATTA-TTT-GA-ACA----ATCCTAAAGT-AA--TCT-AGT-------A------CAATT-ATC-----TCA--TAAATA-AGCG------TTG----CA----TG-C--CG-TTTT-GAT------ATTCTGTTTAAA---TTTCGAA-G-------GCTTGATTT----AAAAATGATGACT
gi|6 : CATAGCCA-AAA-TATTACC-ATTCG-G-CTAATTT-G-CATAAA-TCGtgggtgaattttaacttataagacctatagtaccatt
gi|6 : taT-G--C-----------TGAATACTTTG-A---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-T---T------------------------C---T---GTTTTC-T---AA--TATTAAT---AATG-------AAA-AT-----TTAATTATATAC---AACAGTGA-AGGT-TC--CCAGAAC-ACT-TGAAAA--CAC--GAAGCAC--AA-------AT---CA--CGTTTCCA----ACGA--------CATTCTGAGAAAAA--GATCGC---AAA---TGTCACGTAG-TGT-CAG-CTCT-AG-A-TAACCA-T--GACAA-----ATC--C--T-CA-GCGCAGTG-CTT-AG-AAA----ATCAT---GT-----CTT-----------A------AAATA-GACAGGAGCCA-GTAAGTA-AACT------TTGAC--TAGGGCTA-C--CTTTTAG-GGC------ATTCTGGCTttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacaggagccagtaagtaaactttgactagggctaccttttagggcattctggctttaattt
gi|7 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcCATAGCCA-AAA-TATTACC-ATTCG-G-CTAATTT-G-CATAAA-TCGttaattt
gi|7 : taT-G--C-----------TGAATACTTTG-A---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-T---T------------------------C---T---GTTTTC-T---AA--TATTAAT---AATG-------AAA-AT-----TTAATTATATAC---AACAGTGA-AGGT-TC--CCAGAAC-ACT-TGAAAA--CAC--GAAGCAC--AA-------ATC---A--CGTTTCCA----ACGA--------CATTCTGAGAAAAA--GATCGC--AAAA---TGTCACGTAG-TGT-CAG-CTCT-AG-A-TAACCA-T--GACAA-----ATC--C--T-CA-GCGCAGTGCTTA-GA-AAATCATGTCTTAAAAT-A----------G------AC-----AGA---G-C-----CCA-GTAAGTA-AACT------TTGAC--TAGGGCTA-C--CTTTTAG-GGC------ATTCTGGCTttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacagagcccagtaagtaaactttgactagggctaccttttagggcattctggcttaat
gi|8 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcATATTT--CAT-T-AAT--C---CATT-G--C-----------TACAAACCT-G-A---TTTTCTTAACAAA----TCCTAAA-----GAG-AGATG-T---TAAA-A-T-TACAAAGAACTTA---C---T---GTTTTC-CAA-AA--GA--AGTGGCAATA-------AAATAT-----TAA------TA------AGGTGA-AGGT-TTTTCA-GAAA-AAC-TGAAAA--T-CCTGAA-TGG--AAT------ATCACCA---ATTTCCA----ATGAT--GGTTGCA-----AG-AAAA--GATTG---AATA---TGCAATGAAG-TGCGCAATTTTC-AATA-CAAGCG-T--AACAAAGATCATCTTC--T-CA-----ATTA-TTCTGA-AAA----ATCC--AAGTCCC--TTT-GTTGAACTGTA------AAATT-GTC-----CCA--TAAATA-AACG------TTG----CT----TA-C--CGTTTTT-GAT------taat
gi|9 : attatTT-G-CTAATT--G-CATAAA-CCGCCATAT-----T-GG-TTCCCGATCG-CC-AAATG-GCCGAACAAA-TGA----T--TATA-TA-ACGG-A---------------AAAAAATATTTAAAGACC-AATTTC---C-AT-G--CCATGTTACATGTACATATCTGG-A---ATCTC----TAAA-AT-TTCT-AA-----GAGGA-AGG-T---TAAT-T-T-CA-AAAAGA---A---CTTTT---GTTTCC-CCCAAA--AA--AGT---AATA-------AAATATGA---TTG------TAT---AAAAGTGA-AGGC-TC--CAGAAAC-AAT-TGAAAAACC-T--GAAACAG--AATCCATACATCGCCA--TCTTTCCA----ATGAT--GGCCTCAT----AGAAAAA--GATTGCAAAAAA---TGCCATGAAG-TAC-CAA-CTTCAAA-A-CAAtt
Alignments
lowQualScore : 11111 1 44444444444444444444 22222222222 11111 11111 11111 222222222222222 111 22222222 33333333333333 111111111111 1111111 1111111 1111 11111 222222222 55555555555555555555555555 11111 2222 111111 22222222222 111111 11 22222
lowQualScore : 1 4 4 7 3 3 3 6 00000 4 4 4 0 4 4 8888 55 4 4 33333333333333333333 3 555 88 2 33 66666666666 4 2 555 6666 77777 44444 2 2 555 66666 33 222222222222222 3 222 666 88 555 00000000 9 44444444444444 555 111111111111 3 3 7777777 1 55 5555555 2 7777 7777 44 888 7777 44 777 999 0 3 3 6 3 3 3 0 4 55 00000 66 999999999 4 4 4 8888 3 11111111111111111111111111 6666 00000 4444 4 111111 77777777777 4 55 4 111111 4 55 6 55555 1
lowQualScore : . . . . . . . . ..... . . . . . . .... .. . . .................... . ... .. . .. ........... . . ... .... ..... ..... . . ... ..... .. ............... . ... ... .. ... ........ . .............. ... ............ . . ....... . .. ....... . .... .... .. ... .... .. ... ... . . . . . . . . . .. ..... .. ......... . . . .... . .......................... .... ..... .... . ...... ........... . .. . ...... . .. . ..... .
lowQualScore : 6 0 0 3 6 6 6 7 00000 0 0 0 0 0 0 5555 55 0 0 55555555555555555555 3 888 55 9 99 11111111111 3 9 000 1111 66666 33333 4 9 000 22222 22 555555555555555 1 888 555 55 444 55555555 2 11111111111111 444 333333333333 6 6 8888888 2 00 5555555 6 2222 1111 66 777 5555 66 000 222 4 3 3 7 3 3 3 3 0 55 00000 77 888888888 0 0 0 5555 2 00000000000000000000000000 3333 00000 2222 0 555555 33333333333 0 55 0 555555 5 88 7 88888 0
consensus : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAAGA---A---C---T---GTTTTC-CNC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAA--C-C--GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC-GA-AAA----ATCCTAAAGT-AA--TTT-AGTG------A------AAATT-GTC-----CCATGTAAGTA-AACG------TTG----CA----TA-C--CGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
Reference ( family-1214 ) : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAAGA---A---C---T---GTTTTC-CNC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAA--C-C--GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC-GA-AAA----ATCCTAAAGT-AA--TTT-AGTG------A------AAATT-GTC-----CCATGTAAGTA-AACG------TTG----CA----TA-C--CGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
gi|1 : CATTGCCAGAAA-TATTACC-GTTTTTG-ATAATTT-G-CAAAAAACCACCATAT-----T-GGATTCCCGATCG-CC-AATGG--CCGAAGAAA-AGA----T--TATA-TA-A----G---------------GAAAAAAATT-AACATTTTAATTTC---C-AT-G--C-----------TAAATACCTTG-ATGAATTTC----TAAA-AT--CCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAGGG---A---C---TT--GTTTTC-CAA-AAGAAA--AGC---AGTATTTT---AAA-GTATGTATTT------TAT---AAAAGTGA-AAGT-TT--CCAGAAC-AAT--GAAAA--C-CT-GAAGCGG--AT-------ATCACCA--TAATTCCATGCAGTGAT--GG-TTCAT----AGAAAAA--GATGGC--GAAA---TGCCATGAAG-TGC-CTT-CTTC-AA-A------G-------AA-----ATCT------------CATTA-TTT-GG-AAA----ATCCTAAAG-------------------------------T-GTC-----CCATG--AACA-AACG------TTGCATACA----TA-C--CCTTTTT-TATATATACATTCTGGCTTAA--TTTCTGAA-GGTCCCTCGATTGATTC-----AAAATGAT
gi|10 : TCT-AATTTC---CATT-G--C-----------TACAAACCTTG-A---ATTTC----TAAA-AT--CCTAAA-----GAGGAGATG-T---TAAA-A-T-TACAAAAGAACTA---C---T---GTTTTC-CAA-AA--GA--AGC---AATA-------AAATAT--------------TAT-----AAGTGA-AGGT-TT--CAAGAAC-AAC-TGAAAAT-C-T--GAAATGG--AA-------ATCACCA--TCTTTCCA----ATGAT--GG-TGCAA----AGAAAAA--GATTGC--AAAG---TGCAATGAAG-TGC-CAA-TTTC-AA-A-CAAGCG-T--AACAA-----ATCATC--T-T--C-TCATTA-TTT-GA-AAA----ATCCTAAAGT-CC--TTT-GTTG------AAACTGTAAATT-GTC-----CCA--TAAATA-AACG------TTG----CT----TA-C--CGTTTTT-GAT------TTTaccccggtgaattttcaatatagaaccaaaataccatt
gi|11 : TGCCAGAAA-TGTTACC-GTTTT-G-CTAATTT-G-CATAAA-TCGCCGAAT-----T-GGATTCCCGAACA-CC-AAT-G-GCTGAACAAA-TGG----T--TATA-AA-A----GGAAAAAAAAGATTTAAAAAAAGATTTAAC-TTT-ATTTTT---C-AT-G--C-----------TACATACCTTG-A---ATTTC----CGAA-A--TCCTAAA-----GAGAA---G-T---TACA-G-T-CACAAGAGA---ATTTC---T---GTTTTC-CCC-CA--AA--AGT---AAT--------AAG-AT-----ATG------TAC---GAAAGTGA-
gi|12 : TTTTCA----ATGAT--GG-CGCAT----ATAAAAA--TGTCGC--AAAA---TGCCATAAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--TGTGCG-GCATTA-TTC-GA-ACA----ATCCTAAAGT-AA--T---AGTG------A------AA-TT-GTT-----CCATG--AGTA-AACG------TTG----CA----AA-C--TGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTCGATTT----AAAAATGATGATT
gi|13 : cTAAA-CCGTCAACTCAATAT-GGATTCCCGATCG-CA-AAT-G-GCCAAATAAA-GGA----TACTGTA-TATG----G---------------AAATAATATTT-ACAACA-AATTTCATGC-TA-GGCC-----------TACATACCGTG-----ATTTC----CGAG-AT---CTAAA-----GGAGAGA---T---TGCT-G-TACACAAAA-------------T---TTATCC-CCC-AA--GA--AGT---TGTGCCATGTTAAA-AT-----ATG------TAC---AGAAGTG
gi|14 : ATTGC-AGAAA-TATTACCAGTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGA-TCCCGATCGTCT-AATGGCGCAGA--AAA-GGA----T--TATAGTA-A----G----------------AAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------CAC-TACTGTG-A---ATTTC----CAAA-A--TCCTAAA-----GGGGAGACG-T---TACT-C-T----AAAAGA---A---T---T---c
gi|15 : CAAAAAG---A---C---TTTTGTTTCC-CCC-AA--AA--AGT---AATT-------AAA-ATATTGATTG------TAT---AAAAGTGA-AG-C-TC----AGAAC-AAT-TGAAAC--C-T--GAAACAG--AA-------ATCGCCATTCTTTCCCA----ATGAT--GG-CTCATT---AGAAAAA--GAGTGC--AAAAAAATGCCATGAAG-TAC-CAA-CTTC-AA-AGCAAAt
gi|16 : ttATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAT-CCGCCATGT-----T-AGATTCCCAATCG-CC-AAT-G-GCCGAACAAA-GGA----T--TATA-TA-A----
gi|17 : AAATATTTAAGAACC-AATTTC---C-AT-G--CATGTTACATG-TACATATCTTGGA---ATCTC----TAAA-AT-TC-TAAA-----GAGGAGAGG-T---TA
gi|2 : TTGCCAGAAAATATTAC--GTTTT-G-CTAATTTTG-CATAATTCCGCCATGT-----T-AGATTCCCAATCG-CC-AATGG-ACCGAACAAA-GGA----T--TATA-TA-AG---G---------------AAAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------TAC-TACTTTG-A---ATTTC----CAAA-A--TCCT-AA-----GAGGAGACG-TTAATACT-ATT-CACAAAAGA---CTTTC---T---GTTTTCTCGCAAA--AA--AGT---AAT--------TAA-AT-----TTA------TATTAAAAAATTGACAGGTATC--C-AGAAC-AAT-TAAAAA--T-C--CGAGTGGGAAA-------ATCGCCA--CATTTCCA----ATGATTGAG-CGCAT----ATCAAAA--G-TCGC-----A---TGCCATAAAGTTGC-CAA-CTTC-AA-A-CAAACGAT--AGCAA-----ATCTTC----TA-G-GCATTA-TTC-GA-AAA----ATCCTATAGTAAA--TTG-AGTG------A------ATCTG-GTC-----CCATG--AGTATAACGCCCCCCTTG----CA----AA-CTGTGTTTTT-GAT------ATTCTGG-TACATTTTTTTGAA-GGTTCCTCGCTTGATTT----TAAAATGATAt
gi|3 : CATTGCCAGAAA-TATTACC-GTTTTTG-CTAATTT-G-CATAAT-CCGCCATGT-----TTGGATTCCCGATCG-CCCAATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-GATTTC---C-TT-G--C-----------TAC-TACTTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACTTA-T-CACAAAAGA---AG--C---T---GTTTTC-CGC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAATTGA-------C--CAAGAACTAATATAAAAA--C-C--GAGGCGG--AA-------ATCGCCA--CATTTCCA----ATGAT--GG-CGCAT----ATAAAAACCGGTCGC--AAAA---TGCCATGAAA-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC--C-AAA----ATCCGAAAGT-AAATTTT-AGTG------A------AAATTGGTC-----CCATGTAGTTA-AAC-------TTG----CA----AA-C--TGTTTTT-GAT------ATTCTAGGTACAT-TTTTTGAAGGGTTCCTCGCTTGATTTTAAAAAAAATGATCATTattttc
gi|4 : CATTGCCAAA-----TTACC-GTTTT-GGCTAATTT-GGCATAAT-CCGC-ATGT-----T-GGATTCCCGATCG-CC-AA--G-GCCGAACAAAAGGA----T--T-TA-TA-ATAAGG---------------AAAAAATATTTAACATCT-GATTTC---C-TTTG--C-----------TAACTACTTTG-A---ATTTC----CAAA-AT--CCTAAA-----GAGGAGACGGT---TATT-----CACAAAAGA---A---C---T---GTTTTC-CGC-AA--AA--AGT-----TA-------AAA-TT-----TCA------TAT---AAAATTG--------C--CAAGACA-AAT-TAAAAA--T-C--CGAGCGG--A---------TCGCC---CATT-CCA----ATGAT--GG-CGCAT----ATAAAAA--CGTCGC--AAAAA--TGCAATGAAG-TGC-CAAACTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T--A-G-GCATTA-TTC-CATAAA----ATCC-GAAGT-AA--TTTTAGTG------A------AA-TT-GTC-----CCATG--AGTT-AACG------TTG----CA----AAAC--TGTTTTTTGAT------ATTCTAGGTACA--TTTTTGAA-GGTTCCTCGCTTGATTT-----AAAATGATCATT
gi|5 : ATTGCCAGAAA-TATTACA-ATTTT-G-CTAATTT-C-AACAAA-CCACCATAT-----T-AAATTCCCCATCG-TG-AATGG-TC-----AAA-GGAAAATT--TGTA-TA-A----GG--------------AAAAAATATTAAACTTCT-TATTTG---A-A--G--C-----------TAAGTGCCTTG-A---ATTTC----TAAT-AT--CCTAAT-----CAGGAGATG-T---TACA-G-T-CGCAAAAGA---A---C---TTAAGTTC-C-CTC-AA-------GC---AATA-------ACA--T-----ATG------TAT---AAAAATGA-------------------AT-TGAAG---------------------------TCACCA--GCTTTTCA----AAGAT--GG-TTCAA----AGAAAAA---ATCG-----------GT-ATGAAG-TGT-CAA-CTTC-AA-A-CAAACA-TAAAAAAA-----ATCATCCGT-T-----CATTA-TTT-GA-ACA----ATCCTAAAGT-AA--TCT-AGT-------A------CAATT-ATC-----TCA--TAAATA-AGCG------TTG----CA----TG-C--CG-TTTT-GAT------ATTCTGTTTAAA---TTTCGAA-G-------GCTTGATTT----AAAAATGATGACT
gi|6 : CATAGCCA-AAA-TATTACC-ATTCG-G-CTAATTT-G-CATAAA-TCGtgggtgaattttaacttataagacctatagtaccatt
gi|6 : taT-G--C-----------TGAATACTTTG-A---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-T---T------------------------C---T---GTTTTC-T---AA--TATTAAT---AATG-------AAA-AT-----TTAATTATATAC---AACAGTGA-AGGT-TC--CCAGAAC-ACT-TGAAAA--CAC--GAAGCAC--AA-------AT---CA--CGTTTCCA----ACGA--------CATTCTGAGAAAAA--GATCGC---AAA---TGTCACGTAG-TGT-CAG-CTCT-AG-A-TAACCA-T--GACAA-----ATC--C--T-CA-GCGCAGTG-CTT-AG-AAA----ATCAT---GT-----CTT-----------A------AAATA-GACAGGAGCCA-GTAAGTA-AACT------TTGAC--TAGGGCTA-C--CTTTTAG-GGC------ATTCTGGCTttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacaggagccagtaagtaaactttgactagggctaccttttagggcattctggctttaattt
gi|7 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcCATAGCCA-AAA-TATTACC-ATTCG-G-CTAATTT-G-CATAAA-TCGttaattt
gi|7 : taT-G--C-----------TGAATACTTTG-A---ATTTC----AAAAGATGTAATAAATTTACGAAGGGACA-T---T------------------------C---T---GTTTTC-T---AA--TATTAAT---AATG-------AAA-AT-----TTAATTATATAC---AACAGTGA-AGGT-TC--CCAGAAC-ACT-TGAAAA--CAC--GAAGCAC--AA-------ATC---A--CGTTTCCA----ACGA--------CATTCTGAGAAAAA--GATCGC--AAAA---TGTCACGTAG-TGT-CAG-CTCT-AG-A-TAACCA-T--GACAA-----ATC--C--T-CA-GCGCAGTGCTTA-GA-AAATCATGTCTTAAAAT-A----------G------AC-----AGA---G-C-----CCA-GTAAGTA-AACT------TTGAC--TAGGGCTA-C--CTTTTAG-GGC------ATTCTGGCTttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacagagcccagtaagtaaactttgactagggctaccttttagggcattctggcttaat
gi|8 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcATATTT--CAT-T-AAT--C---CATT-G--C-----------TACAAACCT-G-A---TTTTCTTAACAAA----TCCTAAA-----GAG-AGATG-T---TAAA-A-T-TACAAAGAACTTA---C---T---GTTTTC-CAA-AA--GA--AGTGGCAATA-------AAATAT-----TAA------TA------AGGTGA-AGGT-TTTTCA-GAAA-AAC-TGAAAA--T-CCTGAA-TGG--AAT------ATCACCA---ATTTCCA----ATGAT--GGTTGCA-----AG-AAAA--GATTG---AATA---TGCAATGAAG-TGCGCAATTTTC-AATA-CAAGCG-T--AACAAAGATCATCTTC--T-CA-----ATTA-TTCTGA-AAA----ATCC--AAGTCCC--TTT-GTTGAACTGTA------AAATT-GTC-----CCA--TAAATA-AACG------TTG----CT----TA-C--CGTTTTT-GAT------taat
gi|9 : attatTT-G-CTAATT--G-CATAAA-CCGCCATAT-----T-GG-TTCCCGATCG-CC-AAATG-GCCGAACAAA-TGA----T--TATA-TA-ACGG-A---------------AAAAAATATTTAAAGACC-AATTTC---C-AT-G--CCATGTTACATGTACATATCTGG-A---ATCTC----TAAA-AT-TTCT-AA-----GAGGA-AGG-T---TAAT-T-T-CA-AAAAGA---A---CTTTT---GTTTCC-CCCAAA--AA--AGT---AATA-------AAATATGA---TTG------TAT---AAAAGTGA-AGGC-TC--CAGAAAC-AAT-TGAAAAACC-T--GAAACAG--AATCCATACATCGCCA--TCTTTCCA----ATGAT--GGCCTCAT----AGAAAAA--GATTGCAAAAAA---TGCCATGAAG-TAC-CAA-CTTCAAA-A-CAAtt
blockSeqs : G A A T G T G T CAATA T T C G C A AAAT AC G T GGAAAAAAAAGATTTA . ATG AT T GC CATGTTACATG A G . TTAA GATGT TTTAC T G TAA CTAT AC ACTACT T GCA G TT GGC GCCATGTT T TTAATTATA TAA AGGTTTTTCA T A TCCT A GA TCCATAC A TTCT . TG TTG TCTG CC AAA AAA T G A A T G A AA AGATC AT TGTGCG C T T TCAT T CCCTTTGTTGAACTGTA ATTG AGGAG TGTA T CCCCCC ACTAGGGCT A TG T . C TT G TAAAA A
blockSeqs : G . . . . . . . . . . . G . . . . . . TAAGG . . AT . . ATGTTACATG A . . . GATGT TTTAC C . . CTTA T ATTTCT . CCA A TT . A T TTAATTATA . CAGGTATCC . . ACCT A . T G TC . . CCT TCTG . A A . . T . . . . . . TT TCAGC . . . . T CCTTTGTTGAAACTGT ATT . GTA . . ACTAGGGCT . . . . G T . A C
blockSeqs : G . . . . . . . . . . . G . . . . . . CGGA . . A . . . A . . . ATT . G . . AAA C ACTTTT . AA G . . T T ATTGATTG . AGGTTTCA . . TCT G . . G CA . . TG T . A . . . . . . . . . . TT TCAGC . . . . T AAATTTTAGTGA CTG . GTA . . CTT . . . . G . . T C
blockSeqs : G . . . . . . . . . . . G . . . . . . GG . . T . . . A . . . ATT . C . . CAG C CTTTCT . CC A . . A . GATTG . AGGTTCCC . . CAC G . . G CA . . CG . . A . . . . . . . . . . TT TTAG . . . . G AAATTGAGTGA ATT . TA . . CAA . . . . T . . A G
blockSeqs : G . . . . . . . . . . . T . . . . . . GG . . T . . . C . . . ATT . C . . CTG C ACTTAA . CC A . . A . ATG . AGGTTCCC . . CAC G . . G CA . . CT . . A . . . . . . . . . . TT CGTT . . . . T AATTTTAGTGA ATA . TG . . CAA . . . . C . . .
blockSeqs : A . . . . . . . . . . . . . . . . . . G . . A . . . G . . . AT . C . . CTC C CTTACT . CC A . . A . ATG . AGGCTCCA . . CT G . . A GC . . CG . . A . . . . . . . . . . AT TTC . . . . T AATCTAGTA ATT . TG . . CAA . . . . C
blockSeqs : G . . . . . . . . . . . . . . . . . . G . . T . . . A . . . AT . T . . CAG C ACTTTT . GC A . . G . TTA . AGCTC . . TC G . . A CG . . CG . . A . . . . . . . . . . TT TAG . . . . T AATAGTGA TT . TG . . CAA . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G . . T . . . A . . . AT . C . . AAA T AGCT . GC T . . G . TTG . CCA . . CC A . . G CG . . CG . . A . . . . . . . . . . . TAG . . . . . CTTA TT . TA . . CAT . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . A . . . AT . C . . ATT C ATT . TC T . . A . TCA . CCA . . TC . . . . TC . . TT . . . . . . . . . . . . . . TCA . . . . . AGAC A . TA . . CTT . . . .
blockSeqs : . . . . . . . A . . . A . . . AT . T . . TT . ACT . AA G . . A . ATG . . . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . AT . G . . . . CT . . A . . . . TAA . . . . . . . . . . . . . .
blockSeqs : . . . . . . . AT . . . . . . CT . . . . . . . . .
blockSeqs : . . . . . . . T . . . . T
blockSeqCons : *** ACTTCT********* A** A******* NTG*********** CC***** **** TT TCAGC**** AATTTTAGTGA*************** ATT* CAN******** ****** A****
originalCons : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAAGA---A---C---T---GTTTTC-CNC-AA--AA--AGT---AATA-------AAA-AT-----TTG------TAT---AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAA--C-C--GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTC--T-TA-G-GCATTA-TTC-GA-AAA----ATCCTAAAGT-AA--TTT-AGTG------A------AAATT-GTC-----CCATGTAAGTA-AACG------TTG----CA----TA-C--CGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
finalCons : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAA-AT-TCCTAAA-----GAGGAGACG-T---TACT-G-T-CACAAAAGAACTTCT---------GTTTTC-CNC-AAA--A--AGT---AATA-------AAA-ATNTG-----------TAT---AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAACC-----GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-CGCAT----AGAAAAA--GATCGC--AAAA---TGCCATGAAG-TGC-CAA-CTTC-AA-A-CAAACG-T--AACAA-----ATCTTCTCAGC----GCATTA-TTC-GA-AAA----ATCCTAAAGTAATTTTAGTGA---------------AAATT-GTC-----CCATGTAAGTA-AACG------TTGCAN--------A-C--CGTTTTT-GAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTTA----AAAATGATNATT
Alignments
lowQualScore : 11111 1 44444444444444444444 11 22222222222 11 111 11111 111 22222222 222222222222 11111 1111111 1111111 111111 1111 11111 222222 444444444444444444444444444444 11111 2222 111111 333333333333 111111 11 22222
lowQualScore : 1 4 4 7 3 3 3 6 00000 4 4 4 0 4 4 8888 55 4 4 33333333333333333333 3 555 00 2 33 66666666666 4 2 555 88888 88 4 2 222 66666 3 5 66 3 222 444 88 555 44444444 44 555 666666666666 33333 999999999999 3 3 7777777 1 55 5555555 2 7777 7777 44 8888 666666 44 2222 3 3 3 3 3 3 3 3 0 4 00000 55 777777 4 4 4 8888 3 444444444444444444444444444444 00000 4444 4 111111 000000000000 55 4 111111 4 55 6 55555 1
lowQualScore : . . . . . . . . ..... . . . . . . .... .. . . .................... . ... .. . .. ........... . . ... ..... .. . . ... ..... . . .. . ... ... .. ... ........ .. ... ............ ..... ............ . . ....... . .. ....... . .... .... .. .... ...... .. .... . . . . . . . . . . ..... .. ...... . . . .... . .............................. ..... .... . ...... ............ .. . ...... . .. . ..... .
lowQualScore : 6 0 0 3 6 6 6 7 00000 0 0 0 0 0 0 5555 55 0 0 11111111111111111111 3 888 44 9 99 11111111111 3 9 000 99999 66 6 9 999 55555 1 7 99 1 888 555 55 444 33333333 88 222 111111111111 11111 111111111111 6 6 8888888 2 00 5555555 6 2222 1111 66 7777 999999 66 8888 3 3 3 3 3 3 3 3 3 0 00000 66 111111 0 0 0 5555 2 999999999999999999999999999999 00000 2222 0 555555 999999999999 55 0 555555 5 88 7 88888 0
consensus : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAAATTCCTAAAGAGGAGACG-T---TAC-NN-T-CACAAAAGAAC-TT-CTGTTTTC-CNC-AA--AA--AGT---AATA-------AAA-AT--NT-----G------TAT-----AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAA--C-C--GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-C-GCA-T----AGAAAAA--GATCGC---AAAA-TGCCATGAAG-TGC-CAA-CTT-C-AA-A-CAAACG-TAACAAA-----TCTTCTCAGCG-CATTA-TTC-GA-AAA----ATCCTAAAGT-AATTTTAGTGA------A------AATT-GTC-----CCATGTAAGTA-AACG------TTG----C-A----TAC--CG-TTTTTGAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
Reference ( family-1214 ) : CATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGATTCCCGATCG-CC-AATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-AATTTC---C-TT-G--C-----------TACATACCTTG-A---ATTTC----CAAAATTCCTAAAGAGGAGACG-T---TAC-TG-T-CACAAAAGAAC-TT-CTGTTTTC-CNC-AA--AA--AGT---AATA-------AAA-AT--NT-----G------TAT-----AAAAGTGA-AGGT-TC--CAAGAAC-AAT-TGAAAA--C-C--GAAGCGG--AA-------ATCGCCA--CNTTTCCA----ATGAT--GG-C-GCA-T----AGAAAAA--GATCGC---AAAA-TGCCATGAAG-TGC-CAA-CTT-C-AA-A-CAAACG-TAACAAA-----TCTTCTCAGCG-CATTA-TTC-GA-AAA----ATCCTAAAGT-AATTTTAGTGA------A------AATT-GTC-----CCATGTAAGTA-AACG------TTG----C-A----NAC--CG-TTTTTGAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTTGATTT----AAAAATGATNATT
gi|1 : CATTGCCAGAAA-TATTACC-GTTTTTG-ATAATTT-G-CAAAAAACCACCATAT-----T-GGATTCCCGATCG-CC-AATGG--CCGAAGAAA-AGA----T--TATA-TA-A----G---------------GAAAAAAATT-AACATTTTAATTTC---C-AT-G--C-----------TAAATACCTTG-ATGAATTTC----TAAAAT-CCTAAAGAGGAGACG-T---TAC-TG-T-CACAAAGGGAC-TT---GTTTTC-CAA-AAGAAA--AGC---AGTATTTT---AAA-GT--AT-----G------TATTTTATAAAAGTGA-AAGT-TT--CCAGAAC-AAT--GAAAA--C-CT-GAAGCGG--AT-------ATCACCA--TAATTCCATGCAGTGAT--GG-T-TCA-T----AGAAAAA--GATGGC---GAAA-TGCCATGAAG-TGC-CTT-CTT-C-AA-A------G-----AAA-----TCT---------CATTA-TTT-GG-AAA----ATCCTAAAG-----------------------------T-GTC-----CCATG--AACA-AACG------TTGCATAC-A----TAC--CC-TTTTTTATATATACATTCTGGCTTAA--TTTCTGAA-GGTCCCTCGATTGATTC-----AAAATGAT
gi|10 : TCT-AATTTC---CATT-G--C-----------TACAAACCTTG-A---ATTTC----TAAAAT-CCTAAAGAGGAGATG-T---TAA-AA-T-TACAAAAGAAC-TA-CTGTTTTC-CAA-AA--GA--AGC---AATA-------AAA--T--AT------------TAT-----AA--GTGA-AGGT-TT--CAAGAAC-AAC-TGAAAA--T-CT-GAAATGG--AA-------ATCACCA--TCTTTCCA----ATGAT--GG-T-GCA-A----AGAAAAA--GATTGC---AAAG-TGCAATGAAG-TGC-CAA-TTT-C-AA-A-CAAGCG-TAACAAA-----TCATCTT--CT-CATTA-TTT-GA-AAA----ATCCTAAAGT--CCTTTGTTGAAACTGTA------AATT-GTC-----CCA--TAAATA-AACG------TTG----C-T----TAC--CG-TTTTTGAT------TTTaccccggtgaattttcaatatagaaccaaaataccatt
gi|11 : TGCCAGAAA-TGTTACC-GTTTT-G-CTAATTT-G-CATAAA-TCGCCGAAT-----T-GGATTCCCGAACA-CC-AAT-G-GCTGAACAAA-TGG----T--TATA-AA-A----GGAAAAAAAAGATTTAAAAAAAGATTTAAC-TTT-ATTTTT---C-AT-G--C-----------TACATACCTTG-A---ATTTC----CGAAA-TCCTAAAGAGAA---G-T---TAC-AG-T-CACAAGAGAAT-TT-CTGTTTTC-CCC-CA--AA--AGT---AAT--------AAG-AT--AT-----G------TAC-----GAAAGTGA-
gi|12 : TTTTCA----ATGAT--GG-C-GCA-T----ATAAAAA--TGTCGC---AAAA-TGCCATAAAG-TGC-CAA-CTT-C-AA-A-CAAACG-TAACAAA-----TCTTCTGTGCGGCATTA-TTC-GA-ACA----ATCCTAAAGT-AAT---AGTGA------A------A-TT-GTT-----CCATG--AGTA-AACG------TTG----C-A----AAC--TG-TTTTTGAT------ATTCTGGCTACA--TTTTTGAA-GGTTCCTCGCTCGATTT----AAAAATGATGATT
gi|13 : cTAAA-CCGTCAACTCAATAT-GGATTCCCGATCG-CA-AAT-G-GCCAAATAAA-GGA----TACTGTA-TATG----G---------------AAATAATATTT-ACAACA-AATTTCATGC-TA-GGCC-----------TACATACCGTG-----ATTTC----CGAGAT--CTAAAGGAGAGA---T---TGC-TG-TACACAAAA-----TT----TATCC-CCC-AA--GA--AGT---TGTGCCATGTTAAA-AT--AT-----G------TAC-----AGAAGTG
gi|14 : ATTGC-AGAAA-TATTACCAGTTTT-G-CTAATTT-G-CATAAA-CCGCCATGT-----T-GGA-TCCCGATCGTCT-AATGGCGCAGA--AAA-GGA----T--TATAGTA-A----G----------------AAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------CAC-TACTGTG-A---ATTTC----CAAAA-TCCTAAAGGGGAGACG-T---TAC-TC-T----AAAAGAAT-TT-c
gi|15 : CAAAAAGAC-TT-TTGTTTCC-CCC-AA--AA--AGT---AATT-------AAA-AT--ATTGATTG------TAT-----AAAAGTGA-AG-C-TC----AGAAC-AAT-TGAAAC--C-T--GAAACAG--AA-------ATCGCCATTCTTTCCCA----ATGAT--GG-C-TCATT----AGAAAAA--GAGTGCAAAAAAA-TGCCATGAAG-TAC-CAA-CTT-C-AA-AGCAAA
gi|16 : ttATTGCCAGAAA-TATTACC-GTTTT-G-CTAATTT-G-CATAAT-CCGCCATGT-----T-AGATTCCCAATCG-CC-AAT-G-GCCGAACAAA-GGA----T--TATA-TA-A----
gi|17 : AAATATTTAAGAACC-AATTTC---C-AT-G--CATGTTACATG-TACATATCTTGGA---ATCTC----TAAAATTC-TAAAGAGGAGAGG-T---TA
gi|2 : TTGCCAGAAAATATTAC--GTTTT-G-CTAATTTTG-CATAATTCCGCCATGT-----T-AGATTCCCAATCG-CC-AATGG-ACCGAACAAA-GGA----T--TATA-TA-AG---G---------------AAAAAATATTTAACATCT-AATTTA---C-TT-G--T-----------TAC-TACTTTG-A---ATTTC----CAAAA-TCCT-AAGAGGAGACG-TTAATAC-TATT-CACAAAAGACT-TT-CTGTTTTCTCGCAAA--AA--AGT---AAT--------TAA-AT--TT-----A------TATTAA--AAAATTGACAGGTATC--C-AGAAC-AAT-TAAAAA--T-C--CGAGTGGGAAA-------ATCGCCA--CATTTCCA----ATGATTGAG-C-GCA-T----ATCAAAA--G-TCGC------A-TGCCATAAAGTTGC-CAA-CTT-C-AA-A-CAAACGATAGCAAA-----TCTTCT-AG-G-CATTA-TTC-GA-AAA----ATCCTATAGT-AAATTGAGTGA------A------TCTG-GTC-----CCATG--AGTATAACGCCCCCCTTG----C-A----AACTGTG-TTTTTGAT------ATTCTGG-TACATTTTTTTGAA-GGTTCCTCGCTTGATTT----TAAAATGATAt
gi|3 : CATTGCCAGAAA-TATTACC-GTTTTTG-CTAATTT-G-CATAAT-CCGCCATGT-----TTGGATTCCCGATCG-CCCAATGG-GCCGAACAAA-GGA----T--TATA-TA-A----G---------------AAAAAATATTTAACATCT-GATTTC---C-TT-G--C-----------TAC-TACTTTG-A---ATTTC----CAAAATTCCTAAAGAGGAGACG-T---TACTTA-T-CACAAAAGAA---G-CTGTTTTC-CGC-AA--AA--AGT---AATA-------AAA-AT--TT-----G------TAT-----AAAATTGA-------C--CAAGAACTAATATAAAAA--C-C--GAGGCGG--AA-------ATCGCCA--CATTTCCA----ATGAT--GG-C-GCA-T----ATAAAAACCGGTCGC---AAAA-TGCCATGAAA-TGC-CAA-CTT-C-AA-A-CAAACG-TAACAAA-----TCTTCTTAG-G-CATTA-TTC--C-AAA----ATCCGAAAGTAAATTTTAGTGA------A------AATTGGTC-----CCATGTAGTTA-AAC-------TTG----C-A----AAC--TG-TTTTTGAT------ATTCTAGGTACAT-TTTTTGAAGGGTTCCTCGCTTGATTTTAAAAAAAATGATCATTattttc
gi|4 : CATTGCCAAA-----TTACC-GTTTT-GGCTAATTT-GGCATAAT-CCGC-ATGT-----T-GGATTCCCGATCG-CC-AA--G-GCCGAACAAAAGGA----T--T-TA-TA-ATAAGG---------------AAAAAATATTTAACATCT-GATTTC---C-TTTG--C-----------TAACTACTTTG-A---ATTTC----CAAAAT-CCTAAAGAGGAGACGGT---TAT-T----CACAAAAGAAC-T----GTTTTC-CGC-AA--AA--AGT-----TA-------AAA-TT--TC-----A------TAT-----AAAATTG--------C--CAAGACA-AAT-TAAAAA--T-C--CGAGCGG--A---------TCGCC---CATT-CCA----ATGAT--GG-C-GCA-T----ATAAAAA--CGTCGC---AAAAATGCAATGAAG-TGC-CAAACTT-C-AA-A-CAAACG-TAACAAA-----TCTTCT-AG-G-CATTA-TTC-CATAAA----ATCC-GAAGT-AATTTTAGTGA------A------A-TT-GTC-----CCATG--AGTT-AACG------TTG----CAA----AAC--TGTTTTTTGAT------ATTCTAGGTACA--TTTTTGAA-GGTTCCTCGCTTGATTT-----AAAATGATCATT
gi|5 : ATTGCCAGAAA-TATTACA-ATTTT-G-CTAATTT-C-AACAAA-CCACCATAT-----T-AAATTCCCCATCG-TG-AATGG-T-----CAAA-GGAAAATT--TGTA-TA-AG---G---------------AAAAAATATTAAACTTCT-TATTTG---A--A-G--C-----------TAAGTGCCTTG-A---ATTTC----TAATA-TCCTAATCAGGAGATG-T---TAC-AG-T-CGCAAAAGAAC-TT-AAG-TTCC-CTC------A--AGC---AAT--------AAC-AT--AT-----G------TAT-----AAAAATG-------------------AAT-TG--------------------AA-------GTCACCA--GCTTTTCA----AAGAT--GG-T-TCA-A----AGAAAAA---ATCG----------G-TATGAAG-TGT-CAA-CTT-C-AA-A-CAAACA-TAAAAAA-----AATCATCCGTT-CATTA-TTT-GA-ACA----ATCCTAAAGT-AA-TCTAGT-A------C------AATT-ATC-----TCA--TAAATA-AGCG------TTG----C-A----TGC--CG--TTTTGAT------ATTCTGTTTAAA---TTTCGAA-G-------GCTTGATTT----AAAAATGATGACT
gi|6 : CATAGCCA-AAA-TATTACC-ATTCG-G-CTAATTT-G-CATAAA-TCGtgggtgaattttaacttataagacctatagtaccatt
gi|6 : taT-G--C-----------TGAATACTTTG-A---ATTTC--------------AAA----AGATG-TAA-TAA-AT-T-TACGAAGGGACATT-CTGTTTTC-T---AA--TATTAAT---AATG-------AAA-AT--TT-----AATTATATAC-----AACAGTGA-AGGT-TC--CCAGAAC-ACT-TGAAAA--CAC--GAAGCAC--AA-------AT---CA--CGTTTCCA----ACGA---------CA-TTCTGAGAAAAA--GATCGC----AAA-TGTCACGTAG-TGT-CAG-CTC-T-AG-A-TAACCA-TGACAAA-----TC--CTCAGCG-CAGTG-CTT-AG-AAA----ATCAT-------GTCTT----A------A------AATA-GACAGGAGCCA-GTAAGTA-AACT------TTGAC--T-AGGGCTAC--CT-TTTAGGGC------ATTCTGGCTttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacaggagccagtaagtaaactttgactagggctaccttttagggcattctggctttaattt
gi|7 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcCATAGCCA-AAA-TATTACC-ATTCG-G-CTAATTT-G-CATAAA-TCGttaattt
gi|7 : taT-G--C-----------TGAATACTTTG-A---ATTTC--------------AAA----AGATG-TAA-TAA-AT-T-TACGAAGGGACATT-CTGTTTTC-T---AA--TATTAAT---AATG-------AAA-AT--TT-----AATTATATAC-----AACAGTGA-AGGT-TC--CCAGAAC-ACT-TGAAAA--CAC--GAAGCAC--AA-------ATC---A--CGTTTCCA----ACGA---------CA-TTCTGAGAAAAA--GATCGC---AAAA-TGTCACGTAG-TGT-CAG-CTC-T-AG-A-TAACCA-TGACAAA-----TC--CTCAGCG-CAGTGCTTA-GA-AAATCATGTCTTAAAAT-A--------GAC-----A------GA---G-C-----CCA-GTAAGTA-AACT------TTGAC--T-AGGGCTAC--CT-TTTAGGGC------ATTCTGGCTttacaaaaatctgctgaatactttgaatttcaaaagatgtaataaatttacgaagggacattctgttttctaatattaataatgaaaatttaattatatacaacagtgaaggttcccagaacacttgaaaacacgaagcacaaatcacgtttccaacgacattctgagaaaaagatcgcaaaatgtcacgtagtgtcagctctagataaccatgacaaatcctcagcgcagtgcttagaaaatcatgtcttaaaatagacagagcccagtaagtaaactttgactagggctaccttttagggcattctggcttaat
gi|8 : tacatagccaaaatattaccattcggctaatttgcataaatcgttacaaaaatcATATTT--CAT-T-AAT--C---CATT-G--C-----------TACAAACCT-G-A---TTTTCTTAACAAA--TCCTAAAGAG-AGATG-T---TAA-AA-T-TACAAA-GAAC-TTACTGTTTTC-CAA-AA--GA--AGTGGCAATA-------AAA--T--AT-----T------AAT-----AAG-GTGA-AGGT-TTTTCA-GAAA-AAC-TGAAAA--T-CCTGAA-TGG--AAT------ATCACCA---ATTTCCA----ATGAT--GG-TTGCA------AGAAAA---GATTG----AATA-TGCAATGAAG-TGCGCAA-TTTTC-AATA-CAAGCG-TAACAAAGATCATCTTCTCA-----ATTA-TTCTGA-AAA----ATCC--AAGT-CCCTTTGTTGA------ACTGTAAAATT-GTC-----CCAT--AAATA-AACG------TTG----C-T----TAC--CG-TTTTTGAT------taat
gi|9 : attatTT-G-CTAATT--G-CATAAA-CCGCCATAT-----T-GG-TTCCCGATCG-CC-AAATG-GCCGAACAAA-TGA----T--TATA-TA-ACGG-A---------------AAAAAATATTTAAAGACC-AATTTC---C-AT-G--CCATGTTACATGTACATATCTGG-A---ATCTC----TAAAATTTCT-AAGAGGA-AGG-T---TAA-TT-T-CA-AAAAGAAC-TT-TTGTTTCC-CCCAAA--AA--AGT---AATA-------AAATATGATT-----G------TAT-----AAAAGTGA-AGGC-TC--CAGAAAC-AAT-TGAAAAACC-T--GAAACAG--AATCCATACATCGCCA--TCTTTCCA----ATGAT--GGCC-TCA-T----AGAAAAA--GATTGCAA-AAAA-TGCCATGAAG-TAC-CAA-CTT-CAAA-A-CAAtt