lowQualScore : 1111111111111111111111111111
lowQualScore : 1 222 66666666 2 22 222 1 1111 111 7777777777777 1 11 11 222 22 1 1 1 2222222 22222222 2222222222 111 111 222222 11 222222 11 1 1111 444444444 22222 111111 111 1 22222 11 2222 22222222222222222222 111 11111 1 111111 11111111 111 222222 11 88888888888888888888888 11 2 22222 1 4444444 1 1 1 1 3333333333 1 1 1 111111 333 1 111 11 1 0000000000000000000000000000 333 1 1 1 4444444444444444444444444444 11 88888888888888888888888 1 1 11 22222 1 22 4 1 4 66666666666666666666 1 444
lowQualScore : 7 3 6 111 00000000 4 00 000 7 6 1 3 6666 0 333 0000000000000 0 3 33 2 3 0 77 888 6 3 6 6 7 4 1 00 6 0 0 0 8 0 8 8 2222222 3 99999999 5555555555 6 8 000 999 444 333333 22 000000 33 0 1111 444444444 00000 8 888888 8 8 777 6 88888 11 8 2222 888 0 5 0 5 99999999999999999999 111 1 5 0 11111 5 0 5 2 66 5 5 0 5 66 444444 5 1 22222222 3 000 5 6 1 6 000000 11 00000000000000000000000 6 7 88 0 22222 3 1111111 2 2 6 3 3 3 6 6666666666 3 3 3 999999 333 3 0 3 3 333 33 0 1 4444444444444444444444444444 2 888 2 3 3 6666666666666666666666666666 1 88 44444444444444444444444 3 3 1 1 0 88 00000 3 5 77 2 0 7 0 77777777777777777777 7 555
lowQualScore : . . . ... ........ . .. ... . . . . .... . ... ............. . . .. . . . .. ... . . . . . . . .. . . . . . . . . ....... . ........ .......... . . ... ... ... ...... .. ...... .. . .... ......... ..... . ...... . . ... . ..... .. . .... ... . . . . .................... ... . . . ..... . . . . .. . . . . .. ...... . . ........ . ... . . . . ...... .. ....................... . . .. . ..... . ....... . . . . . . . .......... . . . ...... ... . . . . ... .. . . ............................ . ... . . . ............................ . .. ....................... . . . . . .. ..... . . .. . . . . .................... . ...
lowQualScore : 3 3 7 333 33333333 0 77 777 3 7 0 3 0000 7 000 3333333333333 0 2 88 5 0 8 77 555 0 7 7 7 3 0 0 77 5 0 0 8 0 8 0 0 0000000 8 88888888 6666666666 0 0 000 666 222 000000 88 666666 22 0 8888 888888888 88888 0 000000 0 0 000 0 00000 00 0 2222 666 6 7 7 7 99999999999999999999 666 4 0 4 11111 0 1 0 5 44 0 0 0 0 99 444444 0 7 77777777 7 111 7 0 0 7 222222 00 00000000000000000000000 0 3 55 0 55555 3 7777777 3 3 7 7 3 3 7 3333333333 3 3 3 555555 222 2 0 2 2 888 88 0 0 2222222222222222222222222222 5 000 3 3 3 7777777777777777777777777777 0 33 77777777777777777777777 3 3 0 0 7 33 33333 0 5 55 5 0 0 0 00000000000000000000 0 000
consensus : TAAGCTCTGTAA-ATCTT-TCTGGAAGGG-AA--TCACCTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGANCGNCGAAAT-GG------C--TAC-AAAACAAACTAAA-CTTA--CTTGAAAAA--ATTGTTNAGGACTNGTGCTTAGAAATTAATNCCAAT-AAAACTAAGGTAGTT-ATA-TTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-CAA-TTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCT--G-T-G-GTTCATTCG-AG-GA-TG---CAAG-AT-CTGAA--TTA-TATAT----AC--AAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTATA-GACCCACC-T--AT-TAAAACGC-TCTTACA-TCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCNT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCA--TGCTAGAAAAA----GAC---AGAGATTTA--TGCATATGACATCTTCAAAGATNGGGAGGTCAGAGCAGTCTAAACATTAAATTTTGT-AAGCACC---TTN-GGGCGTCGGGGAAAAAAGTANC-AA-TTTAGCAATAA-TTTATGA--TTA-GG-CAG-ATACCCCAT-GTT-CTGTT-CAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTG---A-TA--TC-AGGACCGTCCCTGTTACACANTGACTTTACACG-GAAAAT-ATCA-ATC-TGAATTCA-GTCATA--TTA-ACTGCTGGTACAA--AAATAT---AAAT----ATATAG-AG--AAAAAATGGGCA-TTTT-GGTACCTAATTG--CAAAT-TACNAAACTNCCATCTTTTTCGAAAAAANAAATTAATGAATCATATAAGAAAACAA-TTTTACTTTAAT-GTCAAAAGCAACGCCGAAAGAGTGTCTAAAATCCGCGAAAAC
Reference ( gi|2 ) : TAAACTCTGTAA-ATCTC-TCTGGAAGGAAAAAACCACATCACTTTT-ATACG-CAGATGATCTTGTACTTCT-CTCAGACAGTCGGAATGGG------G--TAC-AAAACAAACTAAA-CTTA--CTTGAAAAA-TATTGC-GAGAACTGGTGCTTAGAAATTAATACTAAT-AAAACTAAGGTAGTT-ATA-TTTAACA-AAAGTGGTC-ACC-TG---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-CAA-TTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGTGTATAATATT-AT-C-AT-CCT--A-T-G-GTTCATCCA-AG-GA-TG---CAAG-AT-CTGAA--TTA-TATA-----AC--AAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTATA-GACCCACC-T--AT-TAAAACGC-TCTTGCA-TCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGGTACT-CTC-TGCT-CGCA--TGCTAGAAAAA----G-----AGAGATTTA--TATATATGACGTCTTCAAAGATTGGGAGG-CAGAACA-TCTAAACATTAAATTTTGT-AAGCACC---TTATGGGCGTTGGGAAAAAAAGTACC-AA-TTTAGCAATAATTTTCTGAATTTA-GG-CAG-ATACCCCAT-GTT-CTG-T-CAATACTAC-AAAGTATCTTACTTTATTG--GC-ATAGACTGGAAAATAGCTC-AGAATCATCCCTATTACACAGTG-C-TTATACA-GAAAAT-ATCA-ATT-TAAATTCAAATCATA--TTA-ATTGTTGGTACAA--AAATATTACAAAT----ATATAG-AG--AAAAAATGGGCA-TTTT-GATATCTAACTG--CAAATCTATAAAACTATCATCTTTT--AAAAAAACAAATTAA-GAATCATATTAGAAAACAATTTTTACTTTATTGGTC-AAAGCATTGC--GAAGAGTGTCTTAAATCAG-GAAAACTACTGGTCAGAAGATTCCTTTAGAAAGAAAGAAAAAAATATGTA
gi|4 : TAAGCTCTGTAA-ATCTT-TCGGGGGGGG-----TCACTTCAATTTT-ATATG-CAGATGATCATGTAATTCA-ATCAGATAACTGAAATTGGCTACAAGCCTAC-AAAACAAACTAAA-C-TA--CTTGAAAAA-
gi|1 : gcacgttttgaagattttcgtaaagccttcaataagaattggcactagtactgtttaatattcatggaggcattaaactgataataacaatggtttattctattatattataattatgtagtgtgtacatacacaacagtagtgactcgttcatatacacctgaaataggagttagacaaggcgatgtcgtaagcccagacattttaaaattatttttgaatgttttttttttaaaatgctggataaagaaaccaAAACTCTG-AA-AT-TC--CTGGAAG---AAAATCACCTCACTTT--ATAC---AGATGA-CTTGTGCCTCTTCTCAGAACGACGGAATGGG------C--CA--AAAACAAACTAAA-CTTA--CTTGAAAAAATATTGTTGAGGATCTGTG-TTA-AAATTAATCTCAAT-AAAACTAAGGTAATTTATAATTCAACA-AAAA-GTTCGACC-TA---A--TTAA-GAAAA--TT----TCAC---TTTG---CG-TAGCAAATTAT--GAAT---TGTTACCAAA------TATAA-CATC---ATGTATAATAT--AT-CGAT-CCT--G-TTG-GTTCATCAA-CG-GA-TG---CAAG-AT-CTGA---TTA-TATA-----AC--AAA--CTA--T-AAGGC-----T-ACAAA--TTA-T---AAA---A-C------A-TC-A-A-TCTATAAGACCCACC-T--AT-CAAAACGC-TCTTACA-TCTTT-T-GACC-A-T--T------T-AGTTAAA--CCT-AATTGCAT-TGTATGGTCTGTGAGATATGGGGAATA---CCC-TGCT-CGCATTTGCTAGAAAAAAGACA-----AGAGAT-------TATATGACATC-TCAAAGATGAAGAGG-CAG-GCA-TCTAAACATTAAATTTTGTAAAGCACC---TTG-GGACGT--GGAAAAAAA-TACCAAA-TTTAGCACTAA--TTAAGAAATTA-AGCCAGAATACCCCAT-GGTACTGTT-CA--ACTAC-AAAGTA-CTTAATTT-TTG--GC-ATAGACTG-----T---------ACCGTC-------CACAGTG-CTTTATACATGAAAATAATCA-ATT-TAAATTCAAGTCA-A--TTA---TGCTGGTACAACCAAAAA--ACAAAG----ATATAG-AGAAAAAAAATGGGCA-TTTTGGATACATAACTG--CAAATCTA-AAAACTACCATC-TTT--AAAAAAACAAATTAATGAATCATATAAGAAAACAA-TTTTACTTTAAT-GTCAAAAGCAACGCCGAAAGAGTGTCTAAAATCCGCGAAAAC
gi|3 : aatttgttgcaaatacatttaacactgtaaaaacgtctctagcatgcttttaatttttcgtaaagcatttggacactgttatttcactgaaggcaattaaacttaagctttaaacaattaaatatcaaatggtttacttccaatatattagccatgtacagacacacaatatcttttataaaagtagggaacaagttaaactccgttcatatacaccagaggtaggattaacaagtgatttcttaagccgaacatcttcaaaatattctaaacgacttttctaaaatgctagatcaaagaaagtcataTAACATCTTATCTAGAAGGACAA--TCAC-TCACTTTTCATATGGCAGATGATCTT-TGCTCCT-CTCAGACCATCGAA---GG------C--TACCAAAACAACCTAAACCTTACCCTTGACAGA-AATT
gi|11 : ttattcttatatagtatgatagtagacaccaagcaaatatcttttataacaggaaggggaattaaattatgttttcatatacacagagggttggcaggtgacgtcttaagcccgaatttttaatattccctgtaacaccgatttttccctaaaacaatgctaactagagcataaatcA-CTTA--CTT--------ATTGT-TAGGACTGGTGCTTAGAAATTAATGCCAATGAAAACTAAGGTCGTT-ATT-TTCAATA-AACGTGGTT-ACCATA---A--TCAAAGAAAA--TT----TCAT--GTTTG--ACGATA-CAA-TTAT-TGAAT--GTGTTAACAAATAGGACTATAAATATCTAGGcccctccctccctccacctcttagcctagtgcttagaattttactaaaactaaggtataatattaatcaaagtggtcacctaactttaagcaaaaattttcacccgttttacgcgatatacatatctcaatatgtgttaacaaatataaatatctaggctcgtctattatcaccctggatggttcattcagaggatgagacaagaatctgatttattataacataaagcctaaaagcgcgtatatcactttattaaagaaacagtcaaaatctatagtaccaccctaatgtaaaacgataactttttgaccattattagtaaacctagttgcttctttatagctgtgagatatagcg
gi|3 : cttCTAGTGCTTAGAATTT--TACTAA----AACTAAGGTA-TA-ATA-TT-AATC-AAAGTGGTC-ACC-TA---ACTTTAAGCAAAAATTT----TCACCCGTTTTACGCGATA-TAC-ATATCTCAATATGTGTTAACAAA------TATAAATATCTAGGCTCGT-CTATT-AT-C-AC-CCTGGA-T-G-GTTCATTCAGAG-GA-TGAGACAAGAAT-CTGAT--TTATTATA-----ACATAAAGCCTA----AAAGCGCGTATATC--ACTTTATT---AAAGAAA-C------AGTCAA-AATCTATA-GTACCACC-CTAATGTAAAACGA-T-----A-ACTTT-TTGACC-A-TTAT------T-AG-TAAA--CCT-AGTTGCTTCTTTATAG-CTGTGAGATATAGcat
gi|7 : ttattcttatatagtatgatagtagacaccaagcaaatatcttttataacaggaaggggaattaaattatgttttcatatacacagagggttggcaggtgacgtcttaagcccgaatttttaatattccctgtaacaccgatttttccctaaaacaatgctaactagagcataaatctaacatcttatctagaaggacaatcactcacttttcatatggcagatgatctttgctcctctcagaccatcgaaggctaccaaaacaacctaaaccttacccttgacagaaattcccctccctccctccacctcttagcGTT-ATA-TTTAATATAAAGTGGTC-ACC-TAATTA--TTAAAGAAAA---T----TCAC--G-TTG--GCGTTA-CAA-TTA--TGAAT--GTGTTAAGGAC------TGTAAG-ATCTGAAT---TAATATcg
gi|6 : CA-AAAGTGGCC-ATC-TA---A--TGAAAGAAAA--AGAAAATCAA--A---G--GCAATG-CAT-GTAT-TGAAT--ATGTTAACAAA------TATGAAAATCTAGGCG--TAATACT-GT-C-CT-CC---------ATTCA---G-AA-GA-AG---CATA-AT-CTGAATTTTA-TCTA-----AT--AGAG-CTC--TGAAGAC-CTCCT-TCAAAGTTTA-T---A-------------------------TATA-A---------------AAAATTT-TATTACA-TCTTT-TTGACC-A-T--T------T-GGTAAAA--C--------------------CCGTGAGATATGGGGAATACT-TTC-GATT-CGCA--TTTTGGAAAAA----GATAATAGAGATTTA--TATatgcaaagctaatttaaggcctcattcaaactttatttaaaagaacatctataatctatagacccacctattaaaatgctcttgcatctttttgaccatttaccggtagttaaacctattgcgttgtatggctgtgagatatgggggatactc
gi|10 : ATCTAGTGGTA-AGTATTCATGC-ATTCCT--GCT-GCGTTCATTTC-AGCGA--G---CAAG-ATACTGAA--ATA-TATATGATAAC--AAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTATA-GACCCACC-T--AT-TAAAACGC-TCTTACA-T-TCT-TTGACCAA-T--T------T-gacattt
gi|7 : A-AG-GACTG---TAAG-AT-CTGAA--TTAATATAT----GC--AAAG-CTAATTTAAGGC-CTCAT-TCAAACTTTA-TTTAAAAG--AAC------A-TCTATAATCTATA-GACCCACC-T--AT-TAAAATGC-TCTTGCA-TCTTT-TTGACC-A-T--TTACCGGT-AGTTAAA--CCT-A-TTGCGT-TGTATGG-CTGTGAGATATGGGGGATACT-Ctta
gi|5 : gttatatttaatataaagtggtcacctaattattaaagaaaattcacgttggcgttacaattatgaatgtgttT-TCAAACTTTA-C---CA-G--A--------A-TC-A-AATCTATA-GACCCAACGT--AT-TAAAACGC-TCTTACA-TCTTT-TTGACTGA-T--T------T-AGTTAAAATCCT-A-TTACAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTCGTGC--CGCA--TGCTAGAAAAA----GAC---AGAGATT------CATATGACATCTTCAAAGA-TGGGAGGTCAGAGCAGTCTAAACATTAAATTTTGT-AAGCAAC---TTTGGGGCGTTGGG--AAAAAGTGGC-AA-TTTAGCAATAA-TTTCTGA---TAGGG-CAG-ATACCCCATGGTT-CTGTT-CAATACTACAAAAGTATCTT-CTTTATTG--GC-A
gi|14 : T-TCAA-CTTT--T---AAAG--A-CCACTGGA-TC-A-AAT-TATA-GACCCAGC-T---T-TAAA-CGC-TCT-ACT-TCTTTATTGACC-ATT--T------T-AGTTAAA---CT-A-TTGCAT---TATGG-CT-TGA-ATATGGGGGAT-CT-CTC-TA-T-CGCA--TGCTAG
gi|12 : CTATA-GATCCTCT-A--AT-TAA---GCATGTTTCAATATTT-TCGATC-A-T--T------TTAGT-AAA--TTTGA-CTGCCT-TATATGG-CTGTAAGATGT--TGGATATTACTT-CGATATGCA--AGCTGGAAGAA----T-----A-AG---TAGCTGCATAAGATATCTTCAAA
gi|8 : -AAGTACCAAATTA--GGTGTCGGTGAAAGAAGTATC-AAATTTA-CAATAATTTCATG--TTTA-GG-GAG-ATGTTTCA------CTA----AATGATTC-AATGTATCCTACTC--TTGAAGCTATGTCCTG---ACTA--TCGAGGA----CTTTGTTACACATTGAT-TTA-ACG-GAAAAT-ATCACACCGTGG--TCATATGATA--TAA-ACTGTTGGTACAA--AATTAT----AATCTTAATTTAG------AAAAGTGCGCAGTTTT-GGTACCTTATTGTACAAAT-TAT
gi|16 : AT-GTT-CTG-TTCAATACAAC-AGAGTATCTTACTATATTG--GT-ATGGACTGGAAAATAGCTC-AGAATCATCCCT
gi|13 : TACGCA-GAAAAT-ATCA-ATC-TGAAT------CATAGGCTATACTGCTGGTACAA--ATATAT---AAAT-----TATCTCAG--AAAAAATGGACA-TTTT-GGTATCTAATTG--TAAAAATCCCAAATTCTCATTTTTTTCGAAAAAAAAAAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GTTAGTTGACAAATATGTTAACACCGATAACAAACGTCTCTATGCATACTTTGTAGATTTTGTAAAGCCTTAAAGTTTGATACTGTTATTCATGAAGGCATTAAACTTAAACTTTTACAATTAAATAGCAATGGTTTATTCTTTAATTAATATATCATATAGTATGTACAGAC
Unaligned ( gi|15 ): ACACCTGAACTATAGGAGTTAGACAGGGAGACAGTCTAAGCCCACATCTGTGAAAAATTACTAATGAACTGTT
Alignments
lowQualScore : 1 1 2222222 1 11 11 1 11 5555555555 11 11 8888888888888888888888888 1 111111 22222222 1111 111 111 111111 222222 11111 111111 111 33333 1111 11111111111 1 111111 1 2222222 222222222 4444444 1 2 2 1 1 111 11 1 2 1 3333333 1 11 11 8888888888888 111 33 1 11 1 1 1 22222 1111 111 2222 22222 111111 1 1 1111 22222 3333 1 2 2 1 11 1
lowQualScore : 0 3 0 2 0 9999999 2 33 22 3 2 0 33 1 33 2222222222 22 88 11 8 8 0000000000000000000000000 1 2 2 3 1 6 0 3 8 8 6 6 6 6 111111 1 11111111 7777 000 3 6 6 6 000 999999 77 2222 88 8 8 8 0 555555 77777 6 6 111111 6 6 111 6 00000 6 5555 6 5 5 888 0 99999999999 5 0 5 0 4 8888 4 4 1 0 4 8 4 66 222222 4 0 66 5 0 2 666 5 5 0000000 99 999999999 0 8888888 3 4 3 7 3 0 0 777 11 6 0 6 1 0 2 0 1111111 0 33 8 8 3 0 8 0 0 66 11 8 0000000000000 4 111 777 1 88 0 22 0 0 0 3 55555 66 0000 777 0000 44444 999999 0 0 7777 11111 11 0000 1 5 4 0 4 0 5 4 77 4 2 5
lowQualScore : . . . . . ....... . .. .. . . . .. . .. .......... .. .. .. . . ......................... . . . . . . . . . . . . . . ...... . ........ .... ... . . . . ... ...... .. .... .. . . . . ...... ..... . . ...... . . ... . ..... . .... . . . ... . ........... . . . . . .... . . . . . . . .. ...... . . .. . . . ... . . ....... .. ......... . ....... . . . . . . . ... .. . . . . . . . ....... . .. . . . . . . . .. .. . ............. . ... ... . .. . .. . . . . ..... .. .... ... .... ..... ...... . . .... ..... .. .... . . . . . . . . .. . . .
lowQualScore : 7 2 0 5 0 8888888 8 22 55 2 5 0 55 0 22 5555555555 55 88 00 0 0 8888888888888888888888888 0 5 5 2 0 5 0 2 0 0 4 7 7 7 888888 7 88888888 5555 222 5 7 7 7 222 222222 77 1111 88 0 0 0 8 888888 00000 7 7 888888 7 7 777 7 77777 7 5555 7 0 0 888 1 66666666666 0 0 0 1 4 8888 4 4 1 8 4 9 4 11 888888 4 4 99 0 0 8 555 0 7 3333333 22 888888888 8 8888888 2 0 7 3 3 0 0 555 00 5 5 5 0 0 5 0 2222222 0 22 0 0 8 8 0 8 8 44 00 0 8888888888888 2 000 222 0 77 5 00 0 0 0 2 00000 55 2222 555 8888 55555 555555 0 0 8888 00000 77 0000 0 5 0 0 0 0 5 0 55 0 5 0
consensus : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA-AT--TG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAGTT-ATA-TTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-CAA-TTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCTG--T-G-GTTCATTC-GA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATAT----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTATA-GACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCAT--GCTAGAAAAA-G---ACA-GAGATTTA--T-CATATGACATCTTCAAAGAT-GGGAGG-CAGAGCA-TCTAAACATTAAATTTTGTAA-GC-ACC---TT-GGGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTT-NTGAA-TTAGGC-AGA-TACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAA-TAGCTC-AGAATCGTCCCTGTTACACAGTG--TTTATACA-GAAAATA-TCA-ATC-TGAATT-C-A-GTCATATTAACTGCTGGTACAA---AAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--C-AAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
Reference ( family-1209 ) : TAAGCTCTGTAA-ATCTT-TCTGGAAGGG-AA---TCACCTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGANCGNCGAAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA-AT--TG-----------TTNA------GGACTNGTGCTTAGAAATTAATNCCAAT-AAAACTAAGGTAGTT-ATA-TTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-CAA-TTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCTG--T-G-GTTCATTC-GA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATAT----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTATA-GACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCNT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCAT--GCTAGAAAAA-G---ACA-GAGATTTA--TGCATATGACATCTTCAAAGATNGGGAGGTCAGAGCAGTCTAAACATTAAATTTTGTAA-GC-ACC---TT-NGGGCGTCGGGGAAAAAAGTANCAA-TTTAGCAATAA-TTT-ATGA--TTAGGC-AGA-TACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTG----A-TA--TC-AGGACCGTCCCTGTTACACANTGACTTTACACG-GAAAATA-TCA-ATC-TGAATT-C-A-GTCATATTAACTGCTGGTACAA---AAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAATTG--C-AAAT-TACNAAACTNCCATCTTTTTCGAAAAAANAAATTAATGAATCATATAAGAAAACAA-TTTTACTTTAAT-GTCAAAAGCAACGCCGAAAGAGTGTCTAAAATCCGCGAAAAC
gi|1 : AAACTCTG-AA-AT--T-CCTGGAAGAA-AA---TCACCTCACTTT--ATAC---AGATGA-CTTGTGCCTCTTCTCAGAACGACGGAA-TGGG-------C-CA--AAAACAAACTAAAC-TTAC--TTGA-AAAA-ATATTG-----------TTGA------GGATCTGTG-TTA-AAATTAATCTCAAT-AAAACTAAGGTAATTTATAATTCAACA-AAAA-GTTCGACC-TA---A--TTAA-GAAAA--TT----TCAC---TTTG---CG-TAGCAAATTAT--GAAT---TGTTACCAAA------TATAA-CATC---ATGTATAATAT--AT-CGAT-CCTG--TTG-GTTCAT-C-AACG-GA-TG---CAAG-AT-CTGA----TTA-TATA-----ACAAA--CTA--T-AAGGC-----T-ACAAA--TTA-T---AAA---A-C------A-TC-A-A-TCTATAAGACCCACC-T--AT-CAAA-ACGCTCTTACATCTTT-T-GACC-A-T--T------T-AGTTAAA--CCT-AATTGCAT-TGTATGGTCTGTGAGATATGGGGAATACC-CT---GCT-CGCATTTGCTAGAAAAAAG---ACAAGAGATT-------ATATGACATCT-CAAAGATGAAGAGG-CAG-GCA-TCTAAACATTAAATTTTGTAAAGC-ACC---TT-GGGACGT---GGAAAAAAATACCAAATTTAGCACTAA-TTA-A-GAAATTAAGCCAGAATACCCCAT-GGTACTGTTCAA--CTAC-AAAGTA-CTTAATTT-TTG--GC-ATAGACTG----------T-----ACCGTCC-------ACAGTG-CTTTATACATGAAAATAATCA-ATT-TAAATT-C-AAGTCA-ATTA--TGCTGGTACAACCAAAAAAC---AAAG----ATATA-GAGAAAAAAAATGGGCA-TTTTGGATACATAACTG--C-AAATCTA-AAAACTACCATCTTT---AAAAAAACAAATTAATGAATCATATAAGAAAACAA-TTTTACTTTAAT-GTCAAAAGCAACGCCGAAAGAGTGTCTAAAATCCGCGAAAAC
gi|10 : aatttgttgcaaatacatttaacactgtaaaaacgtctctagcatgcttttaatttttcgtaaagcatttggacactgttatttcactgaaggcaattaaacttaagctttaaacaattaaatatcaaatggtttacttccaatatattagccatgtacagacacacaatatcttttataaaagtagggaacaagttaaactccgttcatatacaccagaggtaggattaacaagtgatttcttaagccgaacatcttcaaaatattctaaacgacttttctaaaatgctagatcaaagaaagtcataATCTAGTGGTA-AGTATTCATGC-ATTCCTGC-T-GCGTTCATTT-CA-GCGA--G---CAAG-ATACTGA---AATA-TATATGATAACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTATA-GACCCACC-T--AT-TAAA-ACGCTCTTACAT-TCT-TTGACCAA-T--T------T-
gi|11 : AC-TTAC--TT--------AT--TG-----------TT-A------GGACTGGTGCTTAGAAATTAATGCCAATGAAAACTAAGGTCGTT-ATT-TTCAATA-AACGTGGTT-ACCATA---A--TCAAAGAAAA--TT----TCAT--GTTTG--ACGATA-CAA-TTAT-TGAAT--GTGTTAACAAATAGGACTATAAATATCTAGGCATtta
gi|12 : cttCTATA-GATCCTCT-A--AT-TAAGCATGTT-TCA-ATATTT-TCGATC-A-T--T------TTAGT-AAA--TTTGA-CTGCCT-TATATGG-CTGTAAGATGTTGG--ATATTACTT-CGATATGCAA--GCTGGAAGAA-T---A----AG---TAGCTGCATAAGATATCTTCAAA
gi|13 : TACGCA-GAAAATA-TCA-ATC-TGAATCAT-A-GGC-TAT--ACTGCTGGTACAA---ATATAT---AAAT-----TATCTCAG--AAAAAATGGACA-TTTTGG-TATCTAATTG--TAAAAA-TCCCAAATTCTCATTTTTTTCGAAAAAAAAAAT
gi|14 : T-TCAA-CTTT--T---AAAG--A-CCACTGGA-TC-A-AAT-TATA-GACCCAGC-T---T-TAAA--CGCTCT-ACTTCTTTATTGACC-ATT--T------T-AGTTAAA---CT-A-TTGCAT---TATGG-CT-TGA-ATATGGGGGAT-CT-CTC-TA-T-CGCAT--GCTAG
gi|16 : AT-GTT-CTGTTCAATACAAC-AGAGTATCTTACTATATTG--GT-ATGGACTGGAAAA-TAGCTC-AGAATCATCCCT
gi|2 : TAAACTCTGTAA-ATCTC-TCTGGAAGGA-AAAAACCACATCACTTTT-ATACG-CAGATGATCTTGTACTTCT-CTCAGACAGTCGGAA-TGG--------GGTAC-AAAACAAACTAAAC-TTAC--TTGA-AAAATAT--TG------------CGA------GAACTGGTGCTTAGAAATTAATACTAAT-AAAACTAAGGTAGTT-ATA-TTTAACA-AAAGTGGTC-ACC-TG---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-CAA-TTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGTGTATAATATT-AT-C-AT-CCTA--T-G-GTTCATCC-AA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATA-----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTATA-GACCCACC-T--AT-TAAA-ACGCTCTTGCATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGGTACT-CTC-TGCT-CGCAT--GCTAGAAAAA-G-----A-GAGATTTA--TATATATGACGTCTTCAAAGATTGGGAGG-CAGAACA-TCTAAACATTAAATTTTGTAA-GC-ACC---TTATGGGCGTTGGGAAAAAAAGTACCAA-TTTAGCAATAATTTT-CTGAATTTAGGC-AGA-TACCCCAT-GTT-CTG-TCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATAGACTGGAAAA-TAGCTC-AGAATCATCCCTATTACACAGTG--CTTATACA-GAAAATA-TCA-ATT-TAAATT-CAA-ATCATATTAATTGTTGGTACAA---AAATATTACAAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGA-TATCTAACTG--C-AAATCTATAAAACTATCATCTTTT--AAAAAAACAAATTAA-GAATCATATTAGAAAACAATTTTTACTTTATTGGTC-AAAGCATTGC--GAAGAGTGTCTTAAATCAG-GAAAAC
gi|3 : TAACATCTTATCTAGAAGGACAA---TCAC-TCACTTTTCATATGGCAGATGATCTT-TGCTCCT-CTCAGACCATCGAA---GG--------C-TACCAAAACAACCTAAACCTTACCCTTGACAGAA-AT--TCCCCTCCCTCCCTCCACCTCTTAGCCTAGTGCTTAGAATTT--TAC---T-AAAACTAAGGTA-TA-ATA-TT-AATC-AAAGTGGTC-ACC-TA---ACTTTAAGCAAAAATTT----TCACCCGTTTTACGCGATA-TAC-ATATCTCAATATGTGTTAACAAA------TATAAATATCTAGGCTCGT-CTATT-AT-C-AC-CCTGGAT-G-GTTCATTCAGA-G-GA-TGAGACAAGAAT-CTGATTTATTA-TA-AC----ATAAAGCCTA----AAAGCGCGTATATC--ACTTTATT---AAAGAAA-C------AGTCAA-AATCTATA-GTACCACC-CTAATGTAAA-ACG-----ATAACTTT-TTGACC-A-TTAT------T-AG-TAAA--CCT-AGTTGCTTCTTTATAG-CTGTGAGATATAGtactggtcagaagattcctttagaaagaaagaaaaaaatatgta
gi|4 : ttattcttatatagtatgatagtagacaccaagcaaatatcttttataacaggaaggggaattaaattatgttttcatatacacagagggttggcaggtgacgtcttaagcccgaatttttaatattccctgtaacaccgatttttccctaaaacaatgctaactagagcataaatcTAAGCTCTGTAA-ATCTT-TCGGGGGGGG------TCACTTCAATTTT-ATATG-CAGATGATCATGTAATTCA-ATCAGATAACTGAAATTGGCTACAAGCC-TAC-AAAACAAACTAAAC--TAC--TTGA-AAAA-cg
gi|5 : gcacgttttgaagattttcgtaaagccttcaataagaattggcactagtactgtttaatattcatggaggcattaaactgataataacaatggtttattctattatattataattatgtagtgtgtacatacacaacagtagtgactcgttcatatacacctgaaataggagttagacaaggcgatgtcgtaagcccagacattttaaaattatttttgaatgttttttttttaaaatgctggataaagaaaccaT-TCAAACTTTA-C---CA-G--A--------A-TC-A-AATCTATA-GACCCAACGT--AT-TAAA-ACGCTCTTACATCTTT-TTGACTGA-T--T------T-AGTTAAAATCCT-A-TTACAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTCGTGC--CGCAT--GCTAGAAAAA-G---ACA-GAGATT------CATATGACATCTTCAAAGAT-GGGAGGTCAGAGCAGTCTAAACATTAAATTTTGTAA-GCAACT---TT-GGGGCGTTGGG--AAAAAGTGGCAA-TTTAGCAATAA-TTT-CTGA--TAGGGC-AGA-TACCCCATGGTT-CTGTTCAATACTACAAAAGTATCTT-CTTTATTG--GC-A
gi|6 : A-AAAGTGGCC-ATC-TA---A--TGAAAGAAAA--AGAAAATCAA--A---G--GCAATG-CAT-GTAT-TGAAT--ATGTTAACAAA------TATGAAAATCTAGGCG--TAATACT-GT-C-CT-CC--------ATTCA----GA-A-GA-AG---CATA-AT-CTGA---ATTT-TATCTA---ATAGAG-CTC--TGAAGAC-CTCCT-TCAAAGTTTA-T---A-------------------------TATA-A---------------AAA-ATTTTATTACATCTTT-TTGACC-A-T--T------T-GGTAAAA--C--------------------CCGTGAGATATGGGGAATACT-TTC-GATT-CGCAT--TTTGGAAAAA-GATAATA-GAGATTT------ATATGACATTT
gi|7 : cGTT-ATA-TTTAATATAAAGTGGTC-ACC-TAATTA--TTAAAGAAAA---T----TCAC--G-TTG--GCGTTA-CAA-TTA--TGAAT--GTGTTAAGGAC------TGTAAG-ATCT
gi|7 : A-G-GACTG---TAAG-AT-CTGA---ATTAATATAT----GCAAAG-CTAATTTAAGGC-CTCAT-TCAAACTTTA-TTTAAAAG--AAC------A-TCTATAATCTATA-GACCCACC-T--AT-TAAA-ATGCTCTTGCATCTTT-TTGACC-A-T--TTACCGGT-AGTTAAA--CCT-A-TTGCGT-TGTATGG-CTGTGAGATATGGGGGATACT-Cgaattaatatatgcaaagctaatttaaggcctcattcaaactttatttaaaagaacatctataatctatagacccacctattaaaatgctcttgcatctttttgaccatttaccggtagttaaacctattgcgttgtatggctgtgagatatgggggatactc
gi|8 : gttatatttaatataaagtggtcacctaattattaaagaaaattcacgttggcgttacaattatgaatgtgttaAA-GT-ACCAAATT-AGG-TGTCGGTGAAAGAAGTATCAAATTTA-CAATAA-TTTCATGT--TTAGGG-AG--------AT-GTT-TCACTAAATGATTC-AATGTATCCTACTC--TTGAAGCTATGTCCTG----ACTA--TCGAGGA----CTTTGTTACACATTGA-TTTA-ACG-GAAAATA-TCACACCGTGG--T-C-ATATGATATAAACTGTTGGTACAA---AATTAT----AATCTTAATTTA-G-----AAAAGTGCGCAGTTTTGG-TACCTTATTGTAC-AAAT-TA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTTAGTTGACAAATATGTTAACACCGATAACAAACGTCTCTATGCATACTTTGTAGATTTTGTAAAGCCTTAAAGTTTGATACTGTTATTCATGAAGGCATTAAACTTAAACTTTTACAATTAAATAGCAATGGTTTATTCTTTAATTAATATATCATATAGTATGTACAGAC
Unaligned ( gi|15 ): ACACCTGAACTATAGGAGTTAGACAGGGAGACAGTCTAAGCCCACATCTGTGAAAAATTACTAATGAACTGTT
Alignments
lowQualScore : 1 1 222222 1 11 11 1 11 5555555555 11 11 11 777777777777777777777 1 11 111111 22222222 111111111 11 111 111111 22 11111 111111 111 33333 111 222222222222222222 111111 1 2222222 333333 555555 1 1 1 1 1 1 111 1 1 1 1 11 22 1 1 1 1 11 222222222222 2 1 1 1 1 22222 1111 111 2222 22222 111111 1 1 11 1 11 1 1 1 1 11 1
lowQualScore : 3 0 2 0 777777 0 33 22 3 2 0 22 1 33 2222222222 22 88 11 8 99 777777777777777777777 0 2 2 3 0 6 0 11 8 6 6 6 6 111111 11111111 999999999 3 6 6 44 000 999999 1 6 2222 3 8 8 8 8 0 77 8 77777 6 6 111111 6 6 111 6 00000 6 666 6 5 5 888 0 000000000000000000 4 8888 4 4 1 0 4 8 4 66 222222 4 0 66 0 5 2 666 5 5 0000000 99 6 111111 8 222222 0 3 3 3 7 3 0 0 777 0 6 0 6 0 5 2 0 11 55 0 0 0 3 8 8 3 0 8 0 0 0 11 8 999999999999 0 777 7777 6 7 0 0 0 0 3 55555 66 0000 777 0000 44444 999999 0 0 33 2 7 88 5 1 5 1 5 5 1 77 1 1 5
lowQualScore : . . . . ...... . .. .. . . . .. . .. .......... .. .. .. . .. ..................... . . . . . . . .. . . . . . ...... ........ ......... . . . .. ... ...... . . .... . . . . . . .. . ..... . . ...... . . ... . ..... . ... . . . ... . .................. . .... . . . . . . . .. ...... . . .. . . . ... . . ....... .. . ...... . ...... . . . . . . . . ... . . . . . . . . .. .. . . . . . . . . . . . . .. . ............ . ... .... . . . . . . . ..... .. .... ... .... ..... ...... . . .. . . .. . . . . . . . .. . . .
lowQualScore : 2 0 5 0 888888 8 22 55 2 5 0 88 2 22 5555555555 55 88 00 0 00 222222222222222222222 2 5 5 2 8 5 0 22 0 4 7 7 7 888888 88888888 222222222 5 7 7 00 222 222222 7 0 1111 8 0 0 0 0 8 00 0 00000 7 7 888888 7 7 777 7 77777 7 555 7 0 0 888 1 999999999999999999 4 8888 4 4 1 8 4 9 4 11 888888 4 4 99 0 0 1 555 0 7 3333333 22 7 000000 0 888888 8 3 3 3 3 3 0 0 555 0 5 5 5 2 5 5 0 00 55 0 0 0 2 0 0 8 8 0 8 8 6 00 0 888888888888 8 555 4444 7 0 0 0 0 0 2 00000 55 2222 555 8888 55555 555555 0 0 88 0 3 33 5 0 5 0 0 5 0 55 0 0 0
consensus : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCTG--TG-GTTCATTC-GA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATAT----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCA--TGCTAG-AAAAAG---AC-AG-AGATTT-T-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTC-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATT-CAA-GTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
Reference ( family-1209 ) : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCTG--TG-GTTCATTC-GA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATAT----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCA--TGCTAG-AAAAAG---AC-AG-AGATTTAT-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTN-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATT-C-A-GTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
gi|1 : AAACTCTG-AA-AT--T-CCTGGAAGAA-AA---TCACCTCACTTT--ATAC---AGATGA-CTTGTGCCTCTTCTCAGAACGACGGAA-TGGG-------C-CA--AAAACAAACTAAAC-TTAC--TTGA-AAAAATATTG-----------TTGA------GGATCTGTG-TTA-AAATTAATCTCAAT-AAAACTAAGGTAATTTATAATTCAACA-AAAA-GTTCGACC-TA---A--TT-AAGAAAA--TT----TCAC---TTT---GCG-TAGCAAATTA--TGAAT---TGTTACCAAA------TAT-AACATC---ATGTATAATA-T-AT-CGAT-CCTGT-TG-GTTCA-TC-AACG-GA-TG---CAAG-AT-CTG----ATTA-TATA-----ACAAA--CTA---TAAGGC-----T-ACAAA--TTA-T---AAA---A-C------A-TC---AATCTATAAGACCCACC-T--AT-CAAA-ACGCTCTTACATC-TT-TTGACC-A-T--T------T-AGTTAAA--CCTAA-TTGCAT-TGTATGGTCTGTGAGATATGGGGAATACC-CT---GCT-CGCATTTGCTAGAAAAAAG---ACAAG-AGATT-----ATATGACATC-TCAAAGA-TGAAGAGG-CAG-GCA-TCTAAACATTAAATTTTGTAAAGC-ACC---TTG-GGACGT---GGAAAAAAATACCAAATTTAGCACTAA-TTAA-GAAA-TTA-AGCCAGAATACCCCAT-GGTACTGTTCA--ACTAC-AAAGTA-CTTAATTT-TTG--GC-ATAGACTG-----T---------ACCGTC-------CACAGTGCTTTATACATGAAAATAATCA-ATT-TAAATT-CAA-GTCA-ATTA--TGCTGGTACAACCAAAAAAC---AAAG----ATATA-GAGAAAAAAAATGGGCA-TTTTGGATACATAACTG--CAAATCTA-AAAACTACCATC-TTT--AAAAAAACAAATTAATGAATCATATAAGAAAACAA-TTTTACTTTAAT-GTCAAAAGCAACGCCGAAAGAGTGTCTAAAATCCGCGAAAAC
gi|10 : aatttgttgcaaatacatttaacactgtaaaaacgtctctagcatgcttttaatttttcgtaaagcatttggacactgttatttcactgaaggcaattaaacttaagctttaaacaattaaatatcaaatggtttacttccaatatattagccatgtacagacacacaatatcttttataaaagtagggaacaagttaaactccgttcatatacaccagaggtaggattaacaagtgatttcttaagccgaacatcttcaaaatattctaaacgacttttctaaaatgctagatcaaagaaagtcataATCTAGTGGTA-AGTATTCATGC-ATTCCTGC-TGCGTTCATTT-CA-GCGA--G---CAAG-ATACTGA---AATA-TATATGATAACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACAT-TCT-TTGACCAA-T--T------T-
gi|11 : AC-TTAC--TT---------ATTG-----------TT-A------GGACTGGTGCTTAGAAATTAATGCCAATGAAAACTAAGGTCG-TTAT-TTTCAATA-AACGTGGTT-ACCATA---A--TCAAAGAAAA--TT----TCAT--GTTTG--ACGATA-C-AATTAT-TGAAT--GTGTTAACAAATAGGACTATAAATATCTAGGCATtta
gi|12 : cttCTAT-AGATCCTCT-A--AT-TAAGCATGTT-TCA-ATATTT-TCGATC-A-T--T------TTAGT-AAA--TTTGA-CTGCCT-TATATGG-CTGTAAGATGTTGG--ATATTACTT-CGATATGCA--AGCTGG-AAGAAT---A--AGTAGCTG----CATAAGATATCTTCAAA
gi|13 : TACGCA-GAAAAT-ATCA-ATC-TGAATCAT-A-GGC-TAT--ACTGCTGGTACA---AATATAT---AAAT-----TATCTCAG--AAAAAATGGACA-TTTTGG-TATCTAATTG--TAAAAATCCCAAATTCTCATTTTTTTCGAAAAAAAAAAT
gi|14 : T-TCAA-CTTT--T---AAAG--A-CCACTGGA-TC-A-AAT-TAT-AGACCCAGC-T---T-TAAA--CGCTCT-ACTTCTTTATTGACC-ATT--T------T-AGTTAAA---CT-A-TTGCAT---TATGG-CT-TGA-ATATGGGGGAT-CT-CTC-TA-T-CGCA--TGCTAG-
gi|16 : AT-GTT-CTGTTCAATACAAC-AGAGTATCTTACTATATTG--GT-ATGGACTGGAAAATAGCTC-AGAATCATCCCT
gi|2 : TAAACTCTGTAA-ATCTC-TCTGGAAGGA-AAAAACCACATCACTTTT-ATACG-CAGATGATCTTGTACTTCT-CTCAGACAGTCGGAA-TGG--------GGTAC-AAAACAAACTAAAC-TTAC--TTGA-AAAAT-ATTG------------CGA------GAACTGGTGCTTAGAAATTAATACTAAT-AAAACTAAGGTAG-TTAT-ATTTAACA-AAAGTGGTC-ACC-TG---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGTGTATAATATT-AT-C-AT-CCTA--TG-GTTCATCC-AA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATA-----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTGCATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGGTACT-CTC-TGCT-CGCA--TGCTAG-AAAAAG------AG-AGATTTATATATATGACGTCTTCAAAGATTG-GGAGG-CAGAACA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTATGGGCGTTGGGAAAAAAAGTACC-AATTTAGCAATAATTTTC-TGAATTTA-GG-CAG-ATACCCCAT-GTT-CTG-TCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATAGACTGGAAAATAGCTC-AGAATCATCCCTATTACACAGTG-CTTATACA-GAAAAT-ATCA-ATT-TAAATT-CAA-ATCATATTAATTGTTGGTACA---AAAATATTACAAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGA-TATCTAACTG--CAAATCTATAAAACTATCATCTTTT--AAAAAAACAAATTAA-GAATCATATTAGAAAACAATTTTTACTTTATTGGTC-AAAGCATTGC--GAAGAGTGTCTTAAATCAG-GAAAAC
gi|3 : TAACATCTTATCTAGAAGGACAA---TCAC-TCACTTTTCATATGGCAGATGATCTT-TGCTCCT-CTCAGACCATCGAA---GG--------C-TACCAAAACAACCTAAACCTTACCCTTGACAGAA--ATTCCCCTCCCTCCCTCCACCTCTTAGCCTAGTGCTTAGAATTT--TAC---T-AAAACTAAGGTA--TAAT-ATT-AATC-AAAGTGGTC-ACC-TA---ACTTTAAGCAAAAATTT----TCACCCGTTTTACGCGATA-T-ACATATCTCAATATGTGTTAACAAA------TATAAATATCTAGGCTCGT-CTATT-AT-C-AC-CCTGGATG-GTTCATTCAGA-G-GA-TGAGACAAGAAT-CTGATTTATTA-TA-AC----ATAAAGCCTA----AAAGCGCGTATATC--ACTTTATT---AAAGAAA-C------AGTCAA-AATCTAT-AGTACCACC-CTAATGTAAA-ACG-----ATAACTTT-TTGACC-A-TTAT------T-AG-TAAA--CCT-AGTTGCTTCTTTATAG-CTGTGAGATATAGtactggtcagaagattcctttagaaagaaagaaaaaaatatgta
gi|4 : ttattcttatatagtatgatagtagacaccaagcaaatatcttttataacaggaaggggaattaaattatgttttcatatacacagagggttggcaggtgacgtcttaagcccgaatttttaatattccctgtaacaccgatttttccctaaaacaatgctaactagagcataaatcTAAGCTCTGTAA-ATCTT-TCGGGGGGGG------TCACTTCAATTTT-ATATG-CAGATGATCATGTAATTCA-ATCAGATAACTGAAATTGGCTACAAGCC-TAC-AAAACAAACTAAAC--TAC--TTGA-AAAA--cg
gi|5 : gcacgttttgaagattttcgtaaagccttcaataagaattggcactagtactgtttaatattcatggaggcattaaactgataataacaatggtttattctattatattataattatgtagtgtgtacatacacaacagtagtgactcgttcatatacacctgaaataggagttagacaaggcgatgtcgtaagcccagacattttaaaattatttttgaatgttttttttttaaaatgctggataaagaaaccaT-TCAAACTTTA-C---CA-G--A--------A-TC-A-AATCTAT-AGACCCAACGT--AT-TAAA-ACGCTCTTACATCTTT-TTGACTGA-T--T------T-AGTTAAAATCCT-A-TTACAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTCGTGC--CGCA--TGCTAG-AAAAAG---AC-AG-AGAT---T-CATATGACATCTTCAAAGA-TG-GGAGGTCAGAGCAGTCTAAACATTAAATTTTGT-AAGCAACT---TTG-GGGCGTTGGG--AAAAAGTGGC-AATTTAGCAATAA-TTTC-TGA---TAGGG-CAG-ATACCCCATGGTT-CTGTTCAATACTACAAAAGTATCTT-CTTTATTG--GC-A
gi|6 : A-AAAGTGGCC-ATC-TA---A--TGAAAGAAAA--AGAAAATCAA--A---G--GCAATG-C-ATGTAT-TGAAT--ATGTTAACAAA------TATGAAAATCTAGGCG--TAATACT-GT-C-CT-CC-------ATTCA----GA-A-GA-AG---CATA-AT-CTGA---ATTT-TATCTA---ATAGAG-CTC--TGAAGAC-CTCCT-TCAAAGTTTA-T---A-------------------------TAT-AA---------------AAA-ATTTTATTACATCTTT-TTGACC-A-T--T------T-GGTAAAA--C--------------------CCGTGAGATATGGGGAATACT-TTC-GATT-CGCA--TTTTGG-AAAAAGATAAT-AG-AGATTT----ATATGACATTT
gi|7 : cG-TTAT-ATTTAATATAAAGTGGTC-ACC-TAATTA--TTAAAGAAAA---T----TCAC--G-TTG--GCGTTA-C-AATTA--TGAAT--GTGTTAAGGAC------TGTAAG-ATCT
gi|7 : A-G-GACTG---TAAG-AT-CTGA---ATTAATATAT----GCAAAG-CTAATTTAAGGC-CTCAT-TCAAACTTTA-TTTAAAAG--AAC------A-TCTATAATCTAT-AGACCCACC-T--AT-TAAA-ATGCTCTTGCATCTTT-TTGACC-A-T--TTACCGGT-AGTTAAA--CCT-A-TTGCGT-TGTATGG-CTGTGAGATATGGGGGATACT-Cgaattaatatatgcaaagctaatttaaggcctcattcaaactttatttaaaagaacatctataatctatagacccacctattaaaatgctcttgcatctttttgaccatttaccggtagttaaacctattgcgttgtatggctgtgagatatgggggatactc
gi|8 : gttatatttaatataaagtggtcacctaattattaaagaaaattcacgttggcgttacaattatgaatgtgtta-AAGT-ACCAAATTA-GG-TGTCGGTGAAAGAAGTATCAAATTTA-CAATAA-TTTCATGT--TTA-GG-GAG-AT--------GTT-TCACTAAATGATTC-AATGTATCCTACTCT--TGAAGCTATGTCCTG---ACTA--TCGAGGA----CTTTGTTACACATTGATTTA-ACG-GAAAAT-ATCACACCGTGG--T-C-ATATGATATAAACTGTTGGTACA---AAATTAT----AATCTTAATTTA-G-----AAAAGTGCGCAGTTTTGG-TACCTTATTGTACAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTTAGTTGACAAATATGTTAACACCGATAACAAACGTCTCTATGCATACTTTGTAGATTTTGTAAAGCCTTAAAGTTTGATACTGTTATTCATGAAGGCATTAAACTTAAACTTTTACAATTAAATAGCAATGGTTTATTCTTTAATTAATATATCATATAGTATGTACAGAC
Unaligned ( gi|15 ): ACACCTGAACTATAGGAGTTAGACAGGGAGACAGTCTAAGCCCACATCTGTGAAAAATTACTAATGAACTGTT
Alignments
lowQualScore : 1 1 222222 1 11 11 1 11 5555555555 11 11 11 777777777777777777777 1 11 111111 22222222 111111111 11 111 111111 22 11111 111111 111 33333 111 222222222222222222 111111 1 2222222 3333333333333333333 1 1 1 1 1 1 111 1 1 1 1 1 22 1 1 1 1 11 222222222222 2 1 1 1 1 1 1111 111 2222 22222 111111 1 1 11 1 11 1 1 1 1 11 1
lowQualScore : 3 0 2 0 777777 0 33 22 3 2 0 22 1 33 2222222222 22 88 11 8 99 777777777777777777777 0 2 2 3 0 6 0 11 8 6 6 6 6 111111 11111111 999999999 3 6 6 44 000 999999 1 6 2222 3 8 8 8 8 0 77 8 77777 6 6 111111 6 6 111 6 00000 6 666 6 5 5 888 0 000000000000000000 4 8888 4 4 1 0 4 8 4 66 222222 4 0 66 0 5 2 666 5 5 0000000 99 6 6666666666666666666 0 3 3 3 7 3 0 0 777 0 6 0 6 0 5 2 0 0 55 0 0 0 3 8 8 3 0 8 0 0 0 11 8 999999999999 0 777 7777 6 7 0 0 0 0 333 0 66 0000 777 0000 44444 999999 0 0 33 2 7 88 5 1 5 1 5 5 1 77 1 1 5
lowQualScore : . . . . ...... . .. .. . . . .. . .. .......... .. .. .. . .. ..................... . . . . . . . .. . . . . . ...... ........ ......... . . . .. ... ...... . . .... . . . . . . .. . ..... . . ...... . . ... . ..... . ... . . . ... . .................. . .... . . . . . . . .. ...... . . .. . . . ... . . ....... .. . ................... . . . . . . . . ... . . . . . . . . . .. . . . . . . . . . . . . .. . ............ . ... .... . . . . . . ... . .. .... ... .... ..... ...... . . .. . . .. . . . . . . . .. . . .
lowQualScore : 2 0 5 0 888888 8 22 55 2 5 0 88 2 22 5555555555 55 88 00 0 00 222222222222222222222 2 5 5 2 8 5 0 22 0 4 7 7 7 888888 88888888 222222222 5 7 7 00 222 222222 7 0 1111 8 0 0 0 0 8 00 0 00000 7 7 888888 7 7 777 7 77777 7 555 7 0 0 888 1 999999999999999999 4 8888 4 4 1 8 4 9 4 11 888888 4 4 99 0 0 1 555 0 7 3333333 22 7 6666666666666666666 8 3 3 3 3 3 0 0 555 0 5 5 5 2 5 5 0 0 55 0 0 0 2 0 0 8 8 0 8 8 6 00 0 888888888888 8 555 4444 7 0 0 0 0 0 555 0 55 2222 555 8888 55555 555555 0 0 88 0 3 33 5 0 5 0 0 5 0 55 0 0 0
consensus : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCTG--TG-GTTCATTC-GA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATAT----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCA--TGCTAG-AAAAAG---AC-AG-AGATTT-T-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTC-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATTCA-AGTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
Reference ( family-1209 ) : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCTG--TG-GTTCATTC-GA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATAT----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCA--TGCTAG-AAAAAG---AC-AG-AGATTT-T-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTC-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATTCA-AGTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
gi|1 : AAACTCTG-AA-AT--T-CCTGGAAGAA-AA---TCACCTCACTTT--ATAC---AGATGA-CTTGTGCCTCTTCTCAGAACGACGGAA-TGGG-------C-CA--AAAACAAACTAAAC-TTAC--TTGA-AAAAATATTG-----------TTGA------GGATCTGTG-TTA-AAATTAATCTCAAT-AAAACTAAGGTAATTTATAATTCAACA-AAAA-GTTCGACC-TA---A--TT-AAGAAAA--TT----TCAC---TTT---GCG-TAGCAAATTA--TGAAT---TGTTACCAAA------TAT-AACATC---ATGTATAATA-T-AT-CGAT-CCTGT-TG-GTTCA-TC-AACG-GA-TG---CAAG-AT-CTG----ATTA-TATA-----ACAAA--CTA---TAAGGC-----T-ACAAA--TTA-T---AAA---A-C------A-TC---AATCTATAAGACCCACC-T--AT-CAAA-ACGCTCTTACATC-TT-TTGACC-A-T--T------T-AGTTAAA--CCTAA-TTGCAT-TGTATGGTCTGTGAGATATGGGGAATACC-CT---GCT-CGCATTTGCTAGAAAAAAG---ACAAG-AGATT-----ATATGACATC-TCAAAGA-TGAAGAGG-CAG-GCA-TCTAAACATTAAATTTTGTAAAGC-ACC---TTG-GGACGT---GGAAAAAAATACCAAATTTAGCACTAA-TTAA-GAAA-TTA-AGCCAGAATACCCCAT-GGTACTGTTCA--ACTAC-AAAGTA-CTTAATTT-TTG--GC-ATAGACTG-----T---------ACCGTC-------CACAGTGCTTTATACATGAAAATAATCA-ATT-TAAATTCA-AGTCA-ATTA--TGCTGGTACAACCAAAAAAC---AAAG----ATATA-GAGAAAAAAAATGGGCA-TTTTGGATACATAACTG--CAAATCTA-AAAACTACCATC-TTT--AAAAAAACAAATTAATGAATCATATAAGAAAACAA-TTTTACTTTAAT-GTCAAAAGCAACGCCGAAAGAGTGTCTAAAATCCGCGAAAAC
gi|10 : aatttgttgcaaatacatttaacactgtaaaaacgtctctagcatgcttttaatttttcgtaaagcatttggacactgttatttcactgaaggcaattaaacttaagctttaaacaattaaatatcaaatggtttacttccaatatattagccatgtacagacacacaatatcttttataaaagtagggaacaagttaaactccgttcatatacaccagaggtaggattaacaagtgatttcttaagccgaacatcttcaaaatattctaaacgacttttctaaaatgctagatcaaagaaagtcataATCTAGTGGTA-AGTATTCATGC-ATTCCTGC-TGCGTTCATTT-CA-GCGA--G---CAAG-ATACTGA---AATA-TATATGATAACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACAT-TCT-TTGACCAA-T--T------T-
gi|11 : AC-TTAC--TT---------ATTG-----------TT-A------GGACTGGTGCTTAGAAATTAATGCCAATGAAAACTAAGGTCG-TTAT-TTTCAATA-AACGTGGTT-ACCATA---A--TCAAAGAAAA--TT----TCAT--GTTTG--ACGATA-C-AATTAT-TGAAT--GTGTTAACAAATAGGACTATAAATATCTAGGCATtta
gi|12 : cttCTAT-AGATCCTCT-A--AT-TAAGCATGTT-TCA-ATATTT-TCGATC-A-T--T------TTAGT-AAA--TTTGA-CTGCCT-TATATGG-CTGTAAGATGTTGG--ATATTACTT-CGATATGCA--AGCTGG-AAGAAT---A--AGTAG--CT-G-CATAAGATATCTTCAAA
gi|13 : TACGCA-GAAAAT-ATCA-ATC-TGAAT-CATAGGC-TAT--ACTGCTGGTACA---AATATAT---AAAT-----TATCTCAG--AAAAAATGGACA-TTTTGG-TATCTAATTG--TAAAAATCCCAAATTCTCATTTTTTTCGAAAAAAAAAAT
gi|14 : T-TCAA-CTTT--T---AAAG--A-CCACTGGA-TC-A-AAT-TAT-AGACCCAGC-T---T-TAAA--CGCTCT-ACTTCTTTATTGACC-ATT--T------T-AGTTAAA---CT-A-TTGCAT---TATGG-CT-TGA-ATATGGGGGAT-CT-CTC-TA-T-CGCA--TGCTAG-
gi|16 : AT-GTT-CTGTTCAATACAAC-AGAGTATCTTACTATATTG--GT-ATGGACTGGAAAATAGCTC-AGAATCATCCCT
gi|2 : TAAACTCTGTAA-ATCTC-TCTGGAAGGA-AAAAACCACATCACTTTT-ATACG-CAGATGATCTTGTACTTCT-CTCAGACAGTCGGAA-TGG--------GGTAC-AAAACAAACTAAAC-TTAC--TTGA-AAAAT-ATTG------------CGA------GAACTGGTGCTTAGAAATTAATACTAAT-AAAACTAAGGTAG-TTAT-ATTTAACA-AAAGTGGTC-ACC-TG---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGTGTATAATATT-AT-C-AT-CCTA--TG-GTTCATCC-AA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATA-----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTGCATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGGTACT-CTC-TGCT-CGCA--TGCTAG-AAAAAG------AG-AGATTTATATATATGACGTCTTCAAAGATTG-GGAGG-CAGAACA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTATGGGCGTTGGGAAAAAAAGTACC-AATTTAGCAATAATTTTC-TGAATTTA-GG-CAG-ATACCCCAT-GTT-CTG-TCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATAGACTGGAAAATAGCTC-AGAATCATCCCTATTACACAGTG-CTTATACA-GAAAAT-ATCA-ATT-TAAATTCA-AATCATATTAATTGTTGGTACA---AAAATATTACAAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGA-TATCTAACTG--CAAATCTATAAAACTATCATCTTTT--AAAAAAACAAATTAA-GAATCATATTAGAAAACAATTTTTACTTTATTGGTC-AAAGCATTGC--GAAGAGTGTCTTAAATCAG-GAAAAC
gi|3 : TAACATCTTATCTAGAAGGACAA---TCAC-TCACTTTTCATATGGCAGATGATCTT-TGCTCCT-CTCAGACCATCGAA---GG--------C-TACCAAAACAACCTAAACCTTACCCTTGACAGAA--ATTCCCCTCCCTCCCTCCACCTCTTAGCCTAGTGCTTAGAATTT--TAC---T-AAAACTAAGGTA--TAAT-ATT-AATC-AAAGTGGTC-ACC-TA---ACTTTAAGCAAAAATTT----TCACCCGTTTTACGCGATA-T-ACATATCTCAATATGTGTTAACAAA------TATAAATATCTAGGCTCGT-CTATT-AT-C-AC-CCTGGATG-GTTCATTCAGA-G-GA-TGAGACAAGAAT-CTGATTTATTA-TA-AC----ATAAAGCCTA----AAAGCGCGTATATC--ACTTTATT---AAAGAAA-C------AGTCAA-AATCTAT-AGTACCACC-CTAATGTAAA-ACG-----ATAACTTT-TTGACC-A-TTAT------T-AG-TAAA--CCT-AGTTGCTTCTTTATAG-CTGTGAGATATAGtactggtcagaagattcctttagaaagaaagaaaaaaatatgta
gi|4 : ttattcttatatagtatgatagtagacaccaagcaaatatcttttataacaggaaggggaattaaattatgttttcatatacacagagggttggcaggtgacgtcttaagcccgaatttttaatattccctgtaacaccgatttttccctaaaacaatgctaactagagcataaatcTAAGCTCTGTAA-ATCTT-TCGGGGGGGG------TCACTTCAATTTT-ATATG-CAGATGATCATGTAATTCA-ATCAGATAACTGAAATTGGCTACAAGCC-TAC-AAAACAAACTAAAC--TAC--TTGA-AAAA--cg
gi|5 : gcacgttttgaagattttcgtaaagccttcaataagaattggcactagtactgtttaatattcatggaggcattaaactgataataacaatggtttattctattatattataattatgtagtgtgtacatacacaacagtagtgactcgttcatatacacctgaaataggagttagacaaggcgatgtcgtaagcccagacattttaaaattatttttgaatgttttttttttaaaatgctggataaagaaaccaT-TCAAACTTTA-C---CA-G--A--------A-TC-A-AATCTAT-AGACCCAACGT--AT-TAAA-ACGCTCTTACATCTTT-TTGACTGA-T--T------T-AGTTAAAATCCT-A-TTACAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTCGTGC--CGCA--TGCTAG-AAAAAG---AC-AG-AGA--T-T-CATATGACATCTTCAAAGA-TG-GGAGGTCAGAGCAGTCTAAACATTAAATTTTGT-AAGCAACT---TTG-GGGCGTTGGG--AAAAAGTGGC-AATTTAGCAATAA-TTTC-TGA---TAGGG-CAG-ATACCCCATGGTT-CTGTTCAATACTACAAAAGTATCTT-CTTTATTG--GC-A
gi|6 : A-AAAGTGGCC-ATC-TA---A--TGAAAGAAAA--AGAAAATCAA--A---G--GCAATG-C-ATGTAT-TGAAT--ATGTTAACAAA------TATGAAAATCTAGGCG--TAATACT-GT-C-CT-CC-------ATTCA----GA-A-GA-AG---CATA-AT-CTGA---ATTT-TATCTA---ATAGAG-CTC--TGAAGAC-CTCCT-TCAAAGTTTA-T---A-------------------------TAT-AA---------------AAA-ATTTTATTACATCTTT-TTGACC-A-T--T------T-GGTAAAA--C--------------------CCGTGAGATATGGGGAATACT-TTC-GATT-CGCA--TTTTGG-AAAAAGATAAT-AG-AGATTT----ATATGACATTT
gi|7 : cG-TTAT-ATTTAATATAAAGTGGTC-ACC-TAATTA--TTAAAGAAAA---T----TCAC--G-TTG--GCGTTA-C-AATTA--TGAAT--GTGTTAAGGAC------TGTAAG-ATCT
gi|7 : A-G-GACTG---TAAG-AT-CTGA---ATTAATATAT----GCAAAG-CTAATTTAAGGC-CTCAT-TCAAACTTTA-TTTAAAAG--AAC------A-TCTATAATCTAT-AGACCCACC-T--AT-TAAA-ATGCTCTTGCATCTTT-TTGACC-A-T--TTACCGGT-AGTTAAA--CCT-A-TTGCGT-TGTATGG-CTGTGAGATATGGGGGATACT-Cgaattaatatatgcaaagctaatttaaggcctcattcaaactttatttaaaagaacatctataatctatagacccacctattaaaatgctcttgcatctttttgaccatttaccggtagttaaacctattgcgttgtatggctgtgagatatgggggatactc
gi|8 : gttatatttaatataaagtggtcacctaattattaaagaaaattcacgttggcgttacaattatgaatgtgtta-AAGT-ACCAAATTA-GG-TGTCGGTGAAAGAAGTATCAAATTTA-CAATAA-TTTCATGT--TTA-GG-GAG-AT--------GTT-TCACTAAATGATTC-AATGTATCCTACTCT--TGAAGCTATGTCCTG---ACTA--TCGAGGA----CTTTGTTACACATTGATTTA-ACG-GAAAAT-ATCACACCGTGG--TCA-TATGATATAAACTGTTGGTACA---AAATTAT----AATCTTAATTTA-G-----AAAAGTGCGCAGTTTTGG-TACCTTATTGTACAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTTAGTTGACAAATATGTTAACACCGATAACAAACGTCTCTATGCATACTTTGTAGATTTTGTAAAGCCTTAAAGTTTGATACTGTTATTCATGAAGGCATTAAACTTAAACTTTTACAATTAAATAGCAATGGTTTATTCTTTAATTAATATATCATATAGTATGTACAGAC
Unaligned ( gi|15 ): ACACCTGAACTATAGGAGTTAGACAGGGAGACAGTCTAAGCCCACATCTGTGAAAAATTACTAATGAACTGTT
Alignments
lowQualScore : 1 1 222222 1 11 11 1 11 5555555555 11 11 11 777777777777777777777 1 11 111111 22222222 111111111 11 111 111111 22 11111 111111 111 33333 111 222222222222222222 111111 1 2222222 3333333333333333333 1 1 1 1 1 1 111 1 1 1 1 1 22 1 1 1 1 11 222222222222 2 1 1 1 1 1 1111 111 2222 22222 111111 1 1 11 1 11 1 1 1 1 11 1
lowQualScore : 3 0 2 0 777777 0 33 22 3 2 0 22 1 33 2222222222 22 88 11 8 99 777777777777777777777 0 2 2 3 0 6 0 11 8 6 6 6 6 111111 11111111 999999999 3 6 6 44 000 999999 1 6 2222 3 8 8 8 8 0 77 8 77777 6 6 111111 6 6 111 6 00000 6 666 6 5 5 888 0 000000000000000000 4 8888 4 4 1 0 4 8 4 66 222222 4 0 66 0 5 2 666 5 5 0000000 99 6 6666666666666666666 0 3 3 3 7 3 0 0 777 0 6 0 6 0 5 2 0 0 55 0 0 0 3 8 8 3 0 8 0 0 0 11 8 999999999999 0 777 7777 6 7 0 0 0 0 333 0 66 0000 777 0000 44444 999999 0 0 33 2 7 88 5 1 5 1 5 5 1 77 1 1 5
lowQualScore : . . . . ...... . .. .. . . . .. . .. .......... .. .. .. . .. ..................... . . . . . . . .. . . . . . ...... ........ ......... . . . .. ... ...... . . .... . . . . . . .. . ..... . . ...... . . ... . ..... . ... . . . ... . .................. . .... . . . . . . . .. ...... . . .. . . . ... . . ....... .. . ................... . . . . . . . . ... . . . . . . . . . .. . . . . . . . . . . . . .. . ............ . ... .... . . . . . . ... . .. .... ... .... ..... ...... . . .. . . .. . . . . . . . .. . . .
lowQualScore : 2 0 5 0 888888 8 22 55 2 5 0 88 2 22 5555555555 55 88 00 0 00 222222222222222222222 2 5 5 2 8 5 0 22 0 4 7 7 7 888888 88888888 222222222 5 7 7 00 222 222222 7 0 1111 8 0 0 0 0 8 00 0 00000 7 7 888888 7 7 777 7 77777 7 555 7 0 0 888 1 999999999999999999 4 8888 4 4 1 8 4 9 4 11 888888 4 4 99 0 0 1 555 0 7 3333333 22 7 6666666666666666666 8 3 3 3 3 3 0 0 555 0 5 5 5 2 5 5 0 0 55 0 0 0 2 0 0 8 8 0 8 8 6 00 0 888888888888 8 555 4444 7 0 0 0 0 0 555 0 55 2222 555 8888 55555 555555 0 0 88 0 3 33 5 0 5 0 0 5 0 55 0 0 0
consensus : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCTG--TG-GTTCATTC-GA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATAT----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCA--TGCTAG-AAAAAG---AC-AG-AGATTT-T-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTC-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATTCA-AGTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
Reference ( family-1209 ) : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCTG--TG-GTTCATTC-GA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATAT----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCA--TGCTAG-AAAAAG---AC-AG-AGATTT-T-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTC-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATTCA-AGTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
gi|1 : AAACTCTG-AA-AT--T-CCTGGAAGAA-AA---TCACCTCACTTT--ATAC---AGATGA-CTTGTGCCTCTTCTCAGAACGACGGAA-TGGG-------C-CA--AAAACAAACTAAAC-TTAC--TTGA-AAAAATATTG-----------TTGA------GGATCTGTG-TTA-AAATTAATCTCAAT-AAAACTAAGGTAATTTATAATTCAACA-AAAA-GTTCGACC-TA---A--TT-AAGAAAA--TT----TCAC---TTT---GCG-TAGCAAATTA--TGAAT---TGTTACCAAA------TAT-AACATC---ATGTATAATA-T-AT-CGAT-CCTGT-TG-GTTCA-TC-AACG-GA-TG---CAAG-AT-CTG----ATTA-TATA-----ACAAA--CTA---TAAGGC-----T-ACAAA--TTA-T---AAA---A-C------A-TC---AATCTATAAGACCCACC-T--AT-CAAA-ACGCTCTTACATC-TT-TTGACC-A-T--T------T-AGTTAAA--CCTAA-TTGCAT-TGTATGGTCTGTGAGATATGGGGAATACC-CT---GCT-CGCATTTGCTAGAAAAAAG---ACAAG-AGATT-----ATATGACATC-TCAAAGA-TGAAGAGG-CAG-GCA-TCTAAACATTAAATTTTGTAAAGC-ACC---TTG-GGACGT---GGAAAAAAATACCAAATTTAGCACTAA-TTAA-GAAA-TTA-AGCCAGAATACCCCAT-GGTACTGTTCA--ACTAC-AAAGTA-CTTAATTT-TTG--GC-ATAGACTG-----T---------ACCGTC-------CACAGTGCTTTATACATGAAAATAATCA-ATT-TAAATTCA-AGTCA-ATTA--TGCTGGTACAACCAAAAAAC---AAAG----ATATA-GAGAAAAAAAATGGGCA-TTTTGGATACATAACTG--CAAATCTA-AAAACTACCATC-TTT--AAAAAAACAAATTAATGAATCATATAAGAAAACAA-TTTTACTTTAAT-GTCAAAAGCAACGCCGAAAGAGTGTCTAAAATCCGCGAAAAC
gi|10 : aatttgttgcaaatacatttaacactgtaaaaacgtctctagcatgcttttaatttttcgtaaagcatttggacactgttatttcactgaaggcaattaaacttaagctttaaacaattaaatatcaaatggtttacttccaatatattagccatgtacagacacacaatatcttttataaaagtagggaacaagttaaactccgttcatatacaccagaggtaggattaacaagtgatttcttaagccgaacatcttcaaaatattctaaacgacttttctaaaatgctagatcaaagaaagtcataATCTAGTGGTA-AGTATTCATGC-ATTCCTGC-TGCGTTCATTT-CA-GCGA--G---CAAG-ATACTGA---AATA-TATATGATAACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACAT-TCT-TTGACCAA-T--T------T-
gi|11 : AC-TTAC--TT---------ATTG-----------TT-A------GGACTGGTGCTTAGAAATTAATGCCAATGAAAACTAAGGTCG-TTAT-TTTCAATA-AACGTGGTT-ACCATA---A--TCAAAGAAAA--TT----TCAT--GTTTG--ACGATA-C-AATTAT-TGAAT--GTGTTAACAAATAGGACTATAAATATCTAGGCATtta
gi|12 : cttCTAT-AGATCCTCT-A--AT-TAAGCATGTT-TCA-ATATTT-TCGATC-A-T--T------TTAGT-AAA--TTTGA-CTGCCT-TATATGG-CTGTAAGATGTTGG--ATATTACTT-CGATATGCA--AGCTGG-AAGAAT---A--AGTAG--CT-G-CATAAGATATCTTCAAA
gi|13 : TACGCA-GAAAAT-ATCA-ATC-TGAAT-CATAGGC-TAT--ACTGCTGGTACA---AATATAT---AAAT-----TATCTCAG--AAAAAATGGACA-TTTTGG-TATCTAATTG--TAAAAATCCCAAATTCTCATTTTTTTCGAAAAAAAAAAT
gi|14 : T-TCAA-CTTT--T---AAAG--A-CCACTGGA-TC-A-AAT-TAT-AGACCCAGC-T---T-TAAA--CGCTCT-ACTTCTTTATTGACC-ATT--T------T-AGTTAAA---CT-A-TTGCAT---TATGG-CT-TGA-ATATGGGGGAT-CT-CTC-TA-T-CGCA--TGCTAG-
gi|16 : AT-GTT-CTGTTCAATACAAC-AGAGTATCTTACTATATTG--GT-ATGGACTGGAAAATAGCTC-AGAATCATCCCT
gi|2 : TAAACTCTGTAA-ATCTC-TCTGGAAGGA-AAAAACCACATCACTTTT-ATACG-CAGATGATCTTGTACTTCT-CTCAGACAGTCGGAA-TGG--------GGTAC-AAAACAAACTAAAC-TTAC--TTGA-AAAAT-ATTG------------CGA------GAACTGGTGCTTAGAAATTAATACTAAT-AAAACTAAGGTAG-TTAT-ATTTAACA-AAAGTGGTC-ACC-TG---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGTGTATAATATT-AT-C-AT-CCTA--TG-GTTCATCC-AA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATA-----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTGCATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGGTACT-CTC-TGCT-CGCA--TGCTAG-AAAAAG------AG-AGATTTATATATATGACGTCTTCAAAGATTG-GGAGG-CAGAACA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTATGGGCGTTGGGAAAAAAAGTACC-AATTTAGCAATAATTTTC-TGAATTTA-GG-CAG-ATACCCCAT-GTT-CTG-TCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATAGACTGGAAAATAGCTC-AGAATCATCCCTATTACACAGTG-CTTATACA-GAAAAT-ATCA-ATT-TAAATTCA-AATCATATTAATTGTTGGTACA---AAAATATTACAAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGA-TATCTAACTG--CAAATCTATAAAACTATCATCTTTT--AAAAAAACAAATTAA-GAATCATATTAGAAAACAATTTTTACTTTATTGGTC-AAAGCATTGC--GAAGAGTGTCTTAAATCAG-GAAAAC
gi|3 : TAACATCTTATCTAGAAGGACAA---TCAC-TCACTTTTCATATGGCAGATGATCTT-TGCTCCT-CTCAGACCATCGAA---GG--------C-TACCAAAACAACCTAAACCTTACCCTTGACAGAA--ATTCCCCTCCCTCCCTCCACCTCTTAGCCTAGTGCTTAGAATTT--TAC---T-AAAACTAAGGTA--TAAT-ATT-AATC-AAAGTGGTC-ACC-TA---ACTTTAAGCAAAAATTT----TCACCCGTTTTACGCGATA-T-ACATATCTCAATATGTGTTAACAAA------TATAAATATCTAGGCTCGT-CTATT-AT-C-AC-CCTGGATG-GTTCATTCAGA-G-GA-TGAGACAAGAAT-CTGATTTATTA-TA-AC----ATAAAGCCTA----AAAGCGCGTATATC--ACTTTATT---AAAGAAA-C------AGTCAA-AATCTAT-AGTACCACC-CTAATGTAAA-ACG-----ATAACTTT-TTGACC-A-TTAT------T-AG-TAAA--CCT-AGTTGCTTCTTTATAG-CTGTGAGATATAGtactggtcagaagattcctttagaaagaaagaaaaaaatatgta
gi|4 : ttattcttatatagtatgatagtagacaccaagcaaatatcttttataacaggaaggggaattaaattatgttttcatatacacagagggttggcaggtgacgtcttaagcccgaatttttaatattccctgtaacaccgatttttccctaaaacaatgctaactagagcataaatcTAAGCTCTGTAA-ATCTT-TCGGGGGGGG------TCACTTCAATTTT-ATATG-CAGATGATCATGTAATTCA-ATCAGATAACTGAAATTGGCTACAAGCC-TAC-AAAACAAACTAAAC--TAC--TTGA-AAAA--cg
gi|5 : gcacgttttgaagattttcgtaaagccttcaataagaattggcactagtactgtttaatattcatggaggcattaaactgataataacaatggtttattctattatattataattatgtagtgtgtacatacacaacagtagtgactcgttcatatacacctgaaataggagttagacaaggcgatgtcgtaagcccagacattttaaaattatttttgaatgttttttttttaaaatgctggataaagaaaccaT-TCAAACTTTA-C---CA-G--A--------A-TC-A-AATCTAT-AGACCCAACGT--AT-TAAA-ACGCTCTTACATCTTT-TTGACTGA-T--T------T-AGTTAAAATCCT-A-TTACAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTCGTGC--CGCA--TGCTAG-AAAAAG---AC-AG-AGA--T-T-CATATGACATCTTCAAAGA-TG-GGAGGTCAGAGCAGTCTAAACATTAAATTTTGT-AAGCAACT---TTG-GGGCGTTGGG--AAAAAGTGGC-AATTTAGCAATAA-TTTC-TGA---TAGGG-CAG-ATACCCCATGGTT-CTGTTCAATACTACAAAAGTATCTT-CTTTATTG--GC-A
gi|6 : A-AAAGTGGCC-ATC-TA---A--TGAAAGAAAA--AGAAAATCAA--A---G--GCAATG-C-ATGTAT-TGAAT--ATGTTAACAAA------TATGAAAATCTAGGCG--TAATACT-GT-C-CT-CC-------ATTCA----GA-A-GA-AG---CATA-AT-CTGA---ATTT-TATCTA---ATAGAG-CTC--TGAAGAC-CTCCT-TCAAAGTTTA-T---A-------------------------TAT-AA---------------AAA-ATTTTATTACATCTTT-TTGACC-A-T--T------T-GGTAAAA--C--------------------CCGTGAGATATGGGGAATACT-TTC-GATT-CGCA--TTTTGG-AAAAAGATAAT-AG-AGATTT----ATATGACATTT
gi|7 : cG-TTAT-ATTTAATATAAAGTGGTC-ACC-TAATTA--TTAAAGAAAA---T----TCAC--G-TTG--GCGTTA-C-AATTA--TGAAT--GTGTTAAGGAC------TGTAAG-ATCT
gi|7 : A-G-GACTG---TAAG-AT-CTGA---ATTAATATAT----GCAAAG-CTAATTTAAGGC-CTCAT-TCAAACTTTA-TTTAAAAG--AAC------A-TCTATAATCTAT-AGACCCACC-T--AT-TAAA-ATGCTCTTGCATCTTT-TTGACC-A-T--TTACCGGT-AGTTAAA--CCT-A-TTGCGT-TGTATGG-CTGTGAGATATGGGGGATACT-Cgaattaatatatgcaaagctaatttaaggcctcattcaaactttatttaaaagaacatctataatctatagacccacctattaaaatgctcttgcatctttttgaccatttaccggtagttaaacctattgcgttgtatggctgtgagatatgggggatactc
gi|8 : gttatatttaatataaagtggtcacctaattattaaagaaaattcacgttggcgttacaattatgaatgtgtta-AAGT-ACCAAATTA-GG-TGTCGGTGAAAGAAGTATCAAATTTA-CAATAA-TTTCATGT--TTA-GG-GAG-AT--------GTT-TCACTAAATGATTC-AATGTATCCTACTCT--TGAAGCTATGTCCTG---ACTA--TCGAGGA----CTTTGTTACACATTGATTTA-ACG-GAAAAT-ATCACACCGTGG--TCA-TATGATATAAACTGTTGGTACA---AAATTAT----AATCTTAATTTA-G-----AAAAGTGCGCAGTTTTGG-TACCTTATTGTACAAAT
blockSeqs : T C C A AAAAA A TC GG T G . CA T AT CTACAAGCC CC CT CC C T CCCTCCCTCCCTCCACCTCTT C G A C G G . C T . A ATTA AGAAAA CCGTTTTAC A . . TC ATG TAGGAC A T TATA T C G . T GA C TTCAG . C TGAGA A A TTT A TGATA C ATT G A T TTA ACCACTGGATCA . CTA G C C A A T TA TACCGG T AT G G C CTT . A TCGATA . . ATAATAGAGATTT T . T A G . A AAA T G T A A G T A AT G . . A G . T A A AA T GAAAATAGCTC TCA CCTA A C . . C G ATT T AT TAAT . TACA CTTAA TCAG G . TA C T TC . T T T G . T . T A .
blockSeqs : T . C . CAA T T G T G . CC T A GG C T . . . TTA C G A T . G . T . . . ACT ATTT GTTTG A . . T G . A T TAA T . . . . C . TTTC . . CTG . . . . TA . T . . . . AAACAGTCAA . GT . . C . G . . . . . . . A TA . . CTGCT . . AGAGATTTATAT . . . A . . . . . G T G . G . . . . . . A . . T . A . . GAAAATAGCTC TCA TTTG . T . . . . AT . AT AAAC . A A GAG . . . T T .
blockSeqs : T . C . . . T G T . . TA C . C C T . . . CGA C G . . . G . T . . . A TT GTTTG A . . T G . A T CGT T . . . . . . TCCA . . TG . . . . C . T . . . . AACATCTAT . T . . C . . . . . . . . . A TG . . CGTGC . . AAGTAGCTGC . . . . . C . . . . . . . . . . . . C . A . . ACTATCG . . . . . . T . T AC . . . G . . .
blockSeqs : . . . . . . . . . . A TT GTTG A . . T A . G A TA C . . . . . . G . . AG . . . . T . T . . . . ACATCA . A . . C . . . . . . . . . T TG . . CGATT . . ACAGAGATTC . . . . . . .
blockSeqs : . . . A T AG T . . . G . A . . . G . . . . . . . . . . . ACATCA . T . . A . . . . . . . . . A TG . . CTAT . .
blockSeqs : . . . AATCA . T . . C . . . . . . . . . G . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : ** G* GTTTG**** T* G** TGA* ** TCC** CG*** T** ACATCA************ CGNNT** **
originalCons : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTATAATATT-AT-C-AT-CCTG--TG-GTTCATTC-GA-G-GA-TG---CAAG-AT-CTGA---ATTA-TATAT----ACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTC-CGCT-CGCA--TGCTAG-AAAAAG---AC-AG-AGATTT-T-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTC-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATTCA-AGTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
finalCons : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCACGTTTG----GCGATA-C-AATTAT-TGAATG--TGTTAACAAA------TATAAATATCTAGGCGTGA-ATATT-AT-C-AT-CCTG--TG-GTTCATCC--A-G-GA-TG---CAAG-AT-CTGA---ATTA-TATACG---ACAAAG-CTAT--TAAGGC-CTCAT-TCAAACTTTA-T---AAAGACATCA------------AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGATACT-CTCGNNT--CGCA--TGCTAG-AAAAAG---AC-AG-AGATTT-T-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTC-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATTCA-AGTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTTAGTTGACAAATATGTTAACACCGATAACAAACGTCTCTATGCATACTTTGTAGATTTTGTAAAGCCTTAAAGTTTGATACTGTTATTCATGAAGGCATTAAACTTAAACTTTTACAATTAAATAGCAATGGTTTATTCTTTAATTAATATATCATATAGTATGTACAGAC
Unaligned ( gi|15 ): ACACCTGAACTATAGGAGTTAGACAGGGAGACAGTCTAAGCCCACATCTGTGAAAAATTACTAATGAACTGTT
Alignments
lowQualScore : 1 1 222222 1 11 11 1 11 5555555555 11 11 11 777777777777777777777 1 11 111111 22222222 111111111 11 111 111111 22 22 222222222 111111 1 333333 111 222222222222222222 111111 1 3333333333333333333 1 1 1 1 1 1 111 1 1 1 1 1 22 1 1 1 1 11 222222222222 2 1 1 1 1 1 1111 111 2222 22222 111111 1 1 11 1 11 1 1 1 1 11 1
lowQualScore : 3 0 2 0 777777 0 33 22 3 2 0 22 1 33 2222222222 22 88 11 8 99 777777777777777777777 0 2 2 3 0 6 0 11 8 6 6 6 6 111111 11111111 999999999 3 6 6 44 000 999999 1 44 3 8 8 8 8 77 8 222222222 111111 6 6 3 444444 6 666 6 5 5 888 0 000000000000000000 4 8888 4 4 1 0 4 8 4 66 222222 4 0 66 0 5 2 666 5 5 888 99 6 6666666666666666666 0 3 3 3 7 3 0 0 777 0 6 0 6 0 5 2 0 0 55 0 0 0 3 8 8 3 0 8 0 0 0 11 8 999999999999 0 777 7777 6 7 0 0 0 0 333 0 66 0000 777 0000 44444 999999 0 0 33 2 7 88 5 1 5 1 5 5 1 77 1 1 5
lowQualScore : . . . . ...... . .. .. . . . .. . .. .......... .. .. .. . .. ..................... . . . . . . . .. . . . . . ...... ........ ......... . . . .. ... ...... . .. . . . . . .. . ......... ...... . . . ...... . ... . . . ... . .................. . .... . . . . . . . .. ...... . . .. . . . ... . . ... .. . ................... . . . . . . . . ... . . . . . . . . . .. . . . . . . . . . . . . .. . ............ . ... .... . . . . . . ... . .. .... ... .... ..... ...... . . .. . . .. . . . . . . . .. . . .
lowQualScore : 2 0 5 0 888888 8 22 55 2 5 0 88 2 22 5555555555 55 88 00 0 00 222222222222222222222 2 5 5 2 8 5 0 22 0 4 7 7 7 888888 88888888 222222222 5 7 7 00 222 222222 7 44 8 0 0 0 0 00 0 333333333 888888 7 7 3 888888 7 555 7 0 0 888 1 999999999999999999 4 8888 4 4 1 8 4 9 4 11 888888 4 4 99 0 0 1 555 0 7 777 22 7 6666666666666666666 8 3 3 3 3 3 0 0 555 0 5 5 5 2 5 5 0 0 55 0 0 0 2 0 0 8 8 0 8 8 6 00 0 888888888888 8 555 4444 7 0 0 0 0 0 555 0 55 2222 555 8888 55555 555555 0 0 88 0 3 33 5 0 5 0 0 5 0 55 0 0 0
consensus : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTA-AATATT-AT-C-AT-CCTG--TG-GTTCATT-C--A-G--GA-TG---CAAG-AT-CTGAATTA-TATATGA---CAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGA-TACTCTCGNNTCGCA--TGCTAG-AAAAAG---AC-AG-AGATTT-T-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTC-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATTCA-AGTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
Reference ( family-1209 ) : TAAACTCTGTAA-ATCTT-TCTGGAAGGA-AA---TCACNTCACTTTT-ATACG-CAGATGATCTTGTGCTTCT-CTCAGACCGTCGGAA-TGG--------C-TAC-AAAACAAACTAAAC-TTAC--TTGA-AAAA--ATTG-----------TCGA------GGACTGGTGCTTAGAAATTAATACCAAT-AAAACTAAGGTAG-TTAT-ATTCAATA-AAAGTGGTC-ACC-TA---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGCGTG-AATATT-AT-C-AT-CCTG--TG-GTTCATC-C--A-G--GA-TG---CAAG-AT-CTGAATTA-TATACGA---CAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGA-TACTCTCGNNTCGCA--TGCTAG-AAAAAG---AC-AG-AGATTT-T-CATATGACATCTTCAAAGA-TG-GGAGG-CAGAGCA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTG-GGGCGTCGGGGAAAAAAGTACCAAATTTAGCAATAA-TTTC-TGAA-TTA-GG-CAG-ATACCCCAT-GTT-CTGTTCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATGGACTGGAAAATAGCTC-AGAATCGTCCCTGTTACACAGTG-TTTATACA-GAAAAT-ATCA-ATC-TGAATTCA-AGTCATATTAACTGCTGGTACA---AAAATAT---AAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGG-TACCTAACTG--CAAATCTACAAAACTATCATCTTTT--AAAAAAACAAATTAATGAATCATATNAGAAAACAATTTTTACTTTANTGGTCAAAAGCANCGCCGGAAGAGTGTCTNAAATCNGCGAAAAC
gi|1 : AAACTCTG-AA-AT--T-CCTGGAAGAA-AA---TCACCTCACTTT--ATAC---AGATGA-CTTGTGCCTCTTCTCAGAACGACGGAA-TGGG-------C-CA--AAAACAAACTAAAC-TTAC--TTGA-AAAAATATTG-----------TTGA------GGATCTGTG-TTA-AAATTAATCTCAAT-AAAACTAAGGTAATTTATAATTCAACA-AAAA-GTTCGACC-TA---A--TT-AAGAAAA--TT----TCAC---TTT---GCG-TAGCAAATTA--TGAAT---TGTTACCAAA------TAT-AACATC-ATGTAT--AATA-T-AT-CGAT-CCTGT-TG-GTTCATC-A--ACG--GA-TG---CAAG-AT-CTG-ATTA-TATA--A---CAAA--CTA---TAAGGC-----T-ACAAA--TTA-T---AAA---A-C------A-TC---AATCTATAAGACCCACC-T--AT-CAAA-ACGCTCTTACATC-TT-TTGACC-A-T--T------T-AGTTAAA--CCTAA-TTGCAT-TGTATGGTCTGTGAGATATGGGGAA-TACCCT--GCTCGCATTTGCTAGAAAAAAG---ACAAG-AGATT-----ATATGACATC-TCAAAGA-TGAAGAGG-CAG-GCA-TCTAAACATTAAATTTTGTAAAGC-ACC---TTG-GGACGT---GGAAAAAAATACCAAATTTAGCACTAA-TTAA-GAAA-TTA-AGCCAGAATACCCCAT-GGTACTGTTCA--ACTAC-AAAGTA-CTTAATTT-TTG--GC-ATAGACTG-----T---------ACCGTC-------CACAGTGCTTTATACATGAAAATAATCA-ATT-TAAATTCA-AGTCA-ATTA--TGCTGGTACAACCAAAAAAC---AAAG----ATATA-GAGAAAAAAAATGGGCA-TTTTGGATACATAACTG--CAAATCTA-AAAACTACCATC-TTT--AAAAAAACAAATTAATGAATCATATAAGAAAACAA-TTTTACTTTAAT-GTCAAAAGCAACGCCGAAAGAGTGTCTAAAATCCGCGAAAAC
gi|10 : aatttgttgcaaatacatttaacactgtaaaaacgtctctagcatgcttttaatttttcgtaaagcatttggacactgttatttcactgaaggcaattaaacttaagctttaaacaattaaatatcaaatggtttacttccaatatattagccatgtacagacacacaatatcttttataaaagtagggaacaagttaaactccgttcatatacaccagaggtaggattaacaagtgatttcttaagccgaacatcttcaaaatattctaaacgacttttctaaaatgctagatcaaagaaagtcataATCTAGTGGTA-AGTATTCATGC-ATTCCTGC-TGCGTTCATTTC--A-GC-GA--G---CAAG-ATACTGAAATA-TATATGATAACAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTACAT-TCT-TTGACCAA-T--T------T-
gi|11 : AC-TTAC--TT---------ATTG-----------TT-A------GGACTGGTGCTTAGAAATTAATGCCAATGAAAACTAAGGTCG-TTAT-TTTCAATA-AACGTGGTT-ACCATA---A--TCAAAGAAAA--TT----TCAT--GTTTG--ACGATA-C-AATTAT-TGAAT--GTGTTAACAAATAGGACTATAAATATCTAGGCATtta
gi|12 : cttCTAT-AGATCCTCT-A--AT-TAAGCATGTT-TCA-ATATTT-TCGATC-A-T--T------TTAGT-AAA--TTTGA-CTGCCT-TATATGG-CTGTAAGATGTTGGATATTACT-TCGATATGCA--AGCTGG-AAGAAT---A--AGTAG--CT-G-CATAAGATATCTTCAAA
gi|13 : TACGCA-GAAAAT-ATCA-ATC-TGAAT-CATAGGC-TAT--ACTGCTGGTACA---AATATAT---AAAT-----TATCTCAG--AAAAAATGGACA-TTTTGG-TATCTAATTG--TAAAAATCCCAAATTCTCATTTTTTTCGAAAAAAAAAAT
gi|14 : T-TCAA-CTTT--T---AAAG--A-CCACTGGA-TC-A-AAT-TAT-AGACCCAGC-T---T-TAAA--CGCTCT-ACTTCTTTATTGACC-ATT--T------T-AGTTAAA---CT-A-TTGCAT---TATGG-CT-TGA-ATATGGGGGA-T-CTCTC-TATCGCA--TGCTAG-
gi|16 : AT-GTT-CTGTTCAATACAAC-AGAGTATCTTACTATATTG--GT-ATGGACTGGAAAATAGCTC-AGAATCATCCCT
gi|2 : TAAACTCTGTAA-ATCTC-TCTGGAAGGA-AAAAACCACATCACTTTT-ATACG-CAGATGATCTTGTACTTCT-CTCAGACAGTCGGAA-TGG--------GGTAC-AAAACAAACTAAAC-TTAC--TTGA-AAAAT-ATTG------------CGA------GAACTGGTGCTTAGAAATTAATACTAAT-AAAACTAAGGTAG-TTAT-ATTTAACA-AAAGTGGTC-ACC-TG---A--TTAAAGAAAA--TT----TCAC--GTTTG--GCGATA-C-AATTAT-TGAAT--GTGTTAACAAA------TATAAATATCTAGGTGTATAATATT-AT-C-AT-CCTA--TG-GTTCATC-C--AAG--GA-TG---CAAG-AT-CTGAATTA-TATA--A---CAAAG-CTA--TTAAGGC-CTCAT-TCAAACTTTA-T---AAAG--A-C------A-TC-A-AATCTAT-AGACCCACC-T--AT-TAAA-ACGCTCTTGCATCTTT-TTGACC-A-T--T------T-AGTTAAA--CCT-A-TTGCAT-TGTATGG-CTGTGAGATATGGGGGG-TACTCTCTGCTCGCA--TGCTAG-AAAAAG------AG-AGATTTATATATATGACGTCTTCAAAGATTG-GGAGG-CAGAACA-TCTAAACATTAAATTTTGT-AAGC-ACC---TTATGGGCGTTGGGAAAAAAAGTACC-AATTTAGCAATAATTTTC-TGAATTTA-GG-CAG-ATACCCCAT-GTT-CTG-TCAATACTAC-AAAGTATCTTACTTTATTG--GC-ATAGACTGGAAAATAGCTC-AGAATCATCCCTATTACACAGTG-CTTATACA-GAAAAT-ATCA-ATT-TAAATTCA-AATCATATTAATTGTTGGTACA---AAAATATTACAAAT----ATATA-GAG--AAAAAATGGGCA-TTTTGA-TATCTAACTG--CAAATCTATAAAACTATCATCTTTT--AAAAAAACAAATTAA-GAATCATATTAGAAAACAATTTTTACTTTATTGGTC-AAAGCATTGC--GAAGAGTGTCTTAAATCAG-GAAAAC
gi|3 : TAACATCTTATCTAGAAGGACAA---TCAC-TCACTTTTCATATGGCAGATGATCTT-TGCTCCT-CTCAGACCATCGAA---GG--------C-TACCAAAACAACCTAAACCTTACCCTTGACAGAA--ATTCCCCTCCCTCCCTCCACCTCTTAGCCTAGTGCTTAGAATTT--TAC---T-AAAACTAAGGTA--TAAT-ATT-AATC-AAAGTGGTC-ACC-TA---ACTTTAAGCAAAAATTT----TCACCCGTTTTACGCGATA-T-ACATATCTCAATATGTGTTAACAAA------TATAAATATCTAGGCTCG-TCTATT-AT-C-AC-CCTGGATG-GTTCATT-CAGA-G--GA-TGAGACAAGAAT-CTGATTTATTATAACA---TAAAGCCTA----AAAGCGCGTATATC--ACTTTATT---AAAGAAA-C------AGTCAA-AATCTAT-AGTACCACC-CTAATGTAAA-ACG-----ATAACTTT-TTGACC-A-TTAT------T-AG-TAAA--CCT-AGTTGCTTCTTTATAG-CTGTGAGATATAGtactggtcagaagattcctttagaaagaaagaaaaaaatatgta
gi|4 : ttattcttatatagtatgatagtagacaccaagcaaatatcttttataacaggaaggggaattaaattatgttttcatatacacagagggttggcaggtgacgtcttaagcccgaatttttaatattccctgtaacaccgatttttccctaaaacaatgctaactagagcataaatcTAAGCTCTGTAA-ATCTT-TCGGGGGGGG------TCACTTCAATTTT-ATATG-CAGATGATCATGTAATTCA-ATCAGATAACTGAAATTGGCTACAAGCC-TAC-AAAACAAACTAAAC--TAC--TTGA-AAAA--cg
gi|5 : gcacgttttgaagattttcgtaaagccttcaataagaattggcactagtactgtttaatattcatggaggcattaaactgataataacaatggtttattctattatattataattatgtagtgtgtacatacacaacagtagtgactcgttcatatacacctgaaataggagttagacaaggcgatgtcgtaagcccagacattttaaaattatttttgaatgttttttttttaaaatgctggataaagaaaccaT-TCAAACTTTA-C---CA-G--A--------A-TC-A-AATCTAT-AGACCCAACGT--AT-TAAA-ACGCTCTTACATCTTT-TTGACTGA-T--T------T-AGTTAAAATCCT-A-TTACAT-TGTATGG-CTGTGAGATATGGGGGA-TACTCTCGTGCCGCA--TGCTAG-AAAAAG---AC-AG-AGA--T-T-CATATGACATCTTCAAAGA-TG-GGAGGTCAGAGCAGTCTAAACATTAAATTTTGT-AAGCAACT---TTG-GGGCGTTGGG--AAAAAGTGGC-AATTTAGCAATAA-TTTC-TGA---TAGGG-CAG-ATACCCCATGGTT-CTGTTCAATACTACAAAAGTATCTT-CTTTATTG--GC-A
gi|6 : A-AAAGTGGCC-ATC-TA---A--TGAAAGAAAA--AGAAAATCAA--A---G--GCAATG-C-ATGTAT-TGAAT--ATGTTAACAAA------TATGAAAATCTAGGCGT--AATACT-GT-C-CT-C-----------CATT-C--A-GAAGA-AG---CATA-AT-CTGAATTT-TATCTAA---TAGAG-CTC--TGAAGAC-CTCCT-TCAAAGTTTA-T---A-------------------------TAT-AA---------------AAA-ATTTTATTACATCTTT-TTGACC-A-T--T------T-GGTAAAA--C--------------------CCGTGAGATATGGGGAA-TACTTTCGATTCGCA--TTTTGG-AAAAAGATAAT-AG-AGATTT----ATATGACATTT
gi|7 : cG-TTAT-ATTTAATATAAAGTGGTC-ACC-TAATTA--TTAAAGAAAA---T----TCAC--G-TTG--GCGTTA-C-AATTA--TGAAT--GTGTTAAGGAC------TGTAA
gi|7 : --A-G--GACTG---TAAG-AT-CTGAATTAATATATG----CAAAG-CTAATTTAAGGC-CTCAT-TCAAACTTTA-TTTAAAAG--AAC------A-TCTATAATCTAT-AGACCCACC-T--AT-TAAA-ATGCTCTTGCATCTTT-TTGACC-A-T--TTACCGGT-AGTTAAA--CCT-A-TTGCGT-TGTATGG-CTGTGAGATATGGGGGA-TACTCgatctgaattaatatatgcaaagctaatttaaggcctcattcaaactttatttaaaagaacatctataatctatagacccacctattaaaatgctcttgcatctttttgaccatttaccggtagttaaacctattgcgttgtatggctgtgagatatgggggatactc
gi|8 : gttatatttaatataaagtggtcacctaattattaaagaaaattcacgttggcgttacaattatgaatgtgtta-AAGT-ACCAAATTA-GG-TGTCGGTGAAAGAAGTATCAAATTTA-CAATAA-TTTCATGT--TTA-GG-GAG-AT--------GTT-TCACTAAATGATTC-AATGTATCCTACTCT--TGAAGCTATGTCCTG---ACTA--TCGAGGA----CTTTGTTACACATTGATTTA-ACG-GAAAAT-ATCACACCGTGG--TCA-TATGATATAAACTGTTGGTACA---AAATTAT----AATCTTAATTTA-G-----AAAAGTGCGCAGTTTTGG-TACCTTATTGTACAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTTAGTTGACAAATATGTTAACACCGATAACAAACGTCTCTATGCATACTTTGTAGATTTTGTAAAGCCTTAAAGTTTGATACTGTTATTCATGAAGGCATTAAACTTAAACTTTTACAATTAAATAGCAATGGTTTATTCTTTAATTAATATATCATATAGTATGTACAGAC
Unaligned ( gi|15 ): ACACCTGAACTATAGGAGTTAGACAGGGAGACAGTCTAAGCCCACATCTGTGAAAAATTACTAATGAACTGTT