lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 333333333 111 333333 444444444 44444444444444444444444444444444444444444444 1 1 2222 111 11
lowQualScore : 5 444444444 3 5 9 6 333 222222 777777777 4 77777777777777777777777777777777777777777777 3 3 4444 1 444 4 6 4 3 22 3
lowQualScore : . ......... . . . . ... ...... ......... . ............................................ . . .... . ... . . . . .. .
lowQualScore : 0 999999999 7 3 5 7 222 000000 333333333 8 00000000000000000000000000000000000000000000 3 3 3333 2 000 9 6 3 3 88 3
consensus : TTTTTTGGGAGGGGG--CTTTAGCTTAAATATCATGGAT-TTTCGCGTAC-GNCATGTTG-TCGCC--TNATATAGCGCTTTCATTTGTTGA-------------------------TGG--A-------------AAGCTTGGAT-GGAATTGACATTC---AGTGGTCAACGGTGATATAGTGGGGAC-GCGT-GG-GGTATTGTGA
Reference ( gi|7 ) : TTGTTTGGGAGGGGG--TTTTAACTTAGATATCATGTAT-TTTTGTGTAT-ATCATATTG-TCGCC--GGATATAGCGCTTTCATCTGTTGA-------------------------TAG--A-------------AAGCATGGAT-GGAATTAGCATTT---AGTGCTCAATGGTGATATAGTGGGGAC-GCGT-TG-GGTATTGTGA
gi|11 : TTTTTTGGAAGGGGG--CTT--ACTTAGATATTGTGGAT-TTTTGCATAC-AACATGTAA-TCACC--TTCTA-AGCACTTTCA
gi|8 : catTTTTTAGGGAGGGGG--ACTTAG-TTAAATATGGT---T-TTTCGCATAC-GTCA---TG-TCGCCT-GGAT-T-GTGCTTTTATTTGCTGA-------------------------TGG--A-------------
gi|5 : acTTTGGAAGAAGG------GACTTAAATAT-ATATATATTTTGTGTATAACCATNNNN-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNN-------------------------NNN--NNNNNNNNNCATTTAAGCTTGGAT-TGAATTGACATTTCTGAG-GTCAAACGGTGATATAGCGGGGACGGCATGGG-GGTATTGTGAtttcatagtgaggacgtattgagtattgtgag
gi|9 : TGGGAGGGGGACTTCT---TTGAATATCATGGAA-TTTTGTGTAT-GACA---TG-TCACCTTG---ATAGAACTTTCATTTGTTGA-------------------------T-G--A-------------Agtgcgctcacttaa
gi|4 : actttttaGGGGGGGGG--CTTTA-CTTAAATATTATGCAT-TTTTGTGCAC-AACA----GCTCGCC--TGA-ATAGCGTTTGTATTTGTTGATTGGGTTCCAGGAAGTTCTTCTTGATAGTAA-------------AAGCTTGGAT-GGAATTGACAATC---AGTGGTCAACGGAGATATATTTGGGAT-GCAT-GG-GGTATTGTtttctacaaaggggactt
gi|3 : ttggGGGGGGGGG--CTTTA-CTTAAATATCATGtatcacgctcaccgaggttctg
gi|13 : ttttttggaaaggG--TTTTTGGTTAAATATCATGGAT-TTTCGTGCAT-AGCATGTTG-TCGCC--TCA-GTAGCACTTTCAggttctgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtcaacagtgatatagtggggacgcgtagggtattgtgagcacgttcactaatgtgtt
gi|12 : ccacttttt-------------AAGCGTGAATCGGGA----CATTC---AGGGGTCAGCGGTGATATAGTGGGAAT-GCGT-TG-GATATTGTGA
gi|6 : CACTT---AGGGCTCAACAGTGATATAGTTGGGAC-GTGT-GG-GGTgcgcacgca
gi|14 : ttttgggggagtgtaactcggttaaatgtcatggatttttgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTC---AGTGGTCCACAGTGATATAGAGGGGAC-GTGT-AG-GGTATTGT
gi|3 : TGGTCAACAGTGATATAGTGGGGAC-GCGT-AG-GGTATTGTGAtagcacactcaactaaggttcttt
gi|2 : ttttttggaaagggggggggggctttacttaaatatcatgggttctgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGCTCAACGGTGATATATTGGGGAC-GC-T-TGAGATATTGTGAgcacgttcactaatgtgtt
gi|1 : ttttttgggggggtgggacttgatataaatatcatggatttttgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCAATGGTGAAATAGTAGGGGT-GTGT-GG-GGTATTGTGAgtgcgctcactaaggttcttt
gi|15 : tttttgttggggggggggggggccttgctcagatataattgattttttttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggACGATGATATAGTGTGGAC-GCGT-GG-GGTATTGTatgtgctcgctaaggttctttc
gi|20 : GTGAAATAATGGGGAC-GCAT-GG-GATATTGTGAtagcacgctctctatggttcttta
gi|8 : ATAGTGAGGAC-GTAT-TG-AGTATTGTGAgtgtggtcact
gi|21 : actttttagggagggggacttagttaaatatggtttttcgcatacgtcatgtcgcctggattgtgcttttatttgctgatggatttcTGGGGAC-GCGT-AG-GGTATTGTGAg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ATTGGATCAGATTGACATTCAGGGGTCAGCGGTGATTTAATGGGGATGCATTATGAGCATGCTGACGGAGGTTCTTTTATA
Unaligned ( gi|16 ): ACTTTTGTAGAGGGGGACTTAGTTGAATATCATTGATTTTTGTGTATAGC
Unaligned ( gi|17 ): NACCACTGCTTGGGGAGGGGAAGTTACTTAAATATGGATTTTCGCGTA
Unaligned ( gi|18 ): CACTTTTTGGAAAGGAGGCTTAGTTAAATATGGATTTTTGTGTA
Unaligned ( gi|19 ): CACTTTTTGGAAAGGAGGCTTAGTTAAATATGGATTTTTGTGTA
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 222 111 222 0000000000000000000000000 11
lowQualScore : 5 4 66 77 000 3 0 11 888 1 444 0000000000000000000000000 33 1 8 3 5 1 3 2 2
lowQualScore : . . .. .. ... . . .. ... . ... ......................... .. . . . . . . . .
lowQualScore : 7 4 11 22 444 2 7 77 000 0 777 0000000000000000000000000 88 0 0 8 7 9 6 9 9
consensus : TTTTT-TG-GGAGGG--GG-NTTTAGCTTAAATATCATGGATTTTCGCGTACGNCATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--AAAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
Reference ( family-1185 ) : TTTTT-TG-GGAGGG--GG-CTTTAGCTTAAATATCATGGATTTTCGCGTACGNCATGTTGTCGCCTNATATAGCGCTTTCATTTG-------------------------TTGATGG--AAAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
gi|1 : GGTCAA-TGGTGAAATAGTAGGGGT-GTGT-GGGGTATTGTGA
gi|10 : tttttgttggggggggggggggccttgctcagatataattgattttttttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagTTGGAT-CAGATTGACATT-CAGGGGTCAG-CGGTGATTTAATGGGGAT-GCAT-atgtgctcgctaaggttctttc
gi|11 : aTTTTT-TG-GAAGGG--GG-CTT--ACTTAGATATTGTGGATTTTTGCATACAACATGTAATCACCTTCTA-AGCACTTTCAtatgagcatgctgacggaggttcttttata
gi|12 : catAAGCGTGAATCGG----GACATT-CAGGGGTCAG-CGGTGATATAGTGGGAAT-GCGT-TGGATATTGTGA
gi|13 : G-TTTTTGGTTAAATATCATGGATTTTCGTGCATAGCATGTTGTCGCCTCA-GTAGCACTTTCAgcgcacgca
gi|14 : ccactttttT-CAGTGGTCCA-CAGTGATATAGAGGGGAC-GTGT-AGGGTATTGT
gi|15 : A-CGATGATATAGTGTGGAC-GCGT-GGGGTATTGTtagcacactcaactaaggttcttt
gi|16 : TTT-TGTAGAGGG--GG-ACTTAG-TTGAATATCATTGATTTTTGTGTAtagcacgctctctatggttcttta
gi|17 : acTT-GG-GGAGGG--GA-AGTTA-CTTAAATAT---GGATTTTCGCGTAtagc
gi|2 : naccactgcTTTTT-TG-GGGGGGTGGG-ACTTGATATAAATATCATGGATTTTTG
gi|2 : TGCTCAA-CGGTGATATATTGGGGAC-GCTT-GAGATATTGTGAtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgctcaacggtgatatattggggacgcttgagatattgtgagtgcgctcactaaggttcttt
gi|20 : ttttttgggggggtgggacttgatataaatatcatggatttttgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTGAAATAATGGGGAC-GCAT-GGGATATTGTGAgtgcgctcactaaggttcttt
gi|21 : TGGGGAC-GCGT-AGGGTATTGTGAgtgtggtcact
gi|3 : G-GGGGGG--GG-CTTTA-CTTAAATATCATGGGTTCTgtacgcttgctaa
gi|3 : ttttttggaaaggTGGTCAA-CAGTGATATAGTGGGGAC-GCGT-AGGGTATTGTGAgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtcaacagtgatatagtggggacgcgtagggtattgtgagcacgttcactaatgtgtt
gi|4 : ttttttggaaagggggggggggctttacttaaatatcatgggttctgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnG-GGGGGG--GG-CTTTA-CTTAAATATTATGCATTTTTGTGCACAACA-GCT--CGCCTGA-ATAGCGTTTGTATTTGTTGATTGGGTTCCAGGAAGTTCTTCTTGATAGTAAAAGCTTGGAT-GGAATTGACAAT-CAGTGGTCAA-CGGAGATATATTTGGGAT-GCAT-GGGGTATTGTgcacgttcactaatgtgtt
gi|5 : ttggAAGCTTGGAT-TGAATTGACATTTCTGAGGTCAAACGGTGATATAGCGGGGACGGCATGGGGGTATTGTGAtatcacgctcaccgaggttctg
gi|6 : tttggaagaagggacttaaatatatatatattttgtgtataaccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttCACT-TAGGGCTCAA-CAGTGATATAGTTGGGAC-GTGT-GGGGTgtgcgctcacttaa
gi|7 : ttttgggggagtgtaactcggttaaatgtcatggatttttgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTT-TG-GGAGGG--GG-TTTTAACTTAGATATCATGTATTTTTGTGTATATCATATTGTCGCCGGATATAGCGCTTTCATCTG-------------------------TTGATAG--AAAGCATGGAT-GGAATTAGCATT-TAGTGCTCAA-TGGTGATATAGTGGGGAC-GCGT-TGGGTATTGTGA
gi|8 : TTTTT-AG-GGAGGG--GG-ACTTAG-TTAAATAT---GGTTTTTCGCATACGTCA---TGTCGCCTGG-ATTGTGCTTTTATTTG-------------------------CTGATGG--A
gi|8 : acATAGTGAGGAC-GTAT-TGAGTATTGTGAtttcatagtgaggacgtattgagtattgtgag
gi|9 : actttttagggagggggacttagttaaatatggtttttcgcatacgtcatgtcgcctggattgtgcttttatttgctgatggatttcTTTTTATG-GGAGGG--GGACTTC--TTTGAATATCATGGAATTTTGTGTATGACA---TGTCACCTTG-ATAGAACTTTCATTTG-------------------------TTGATGA--Ag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CACTTTTTGGAAAGGAGGCTTAGTTAAATATGGATTTTTGTGTA
Unaligned ( gi|19 ): CACTTTTTGGAAAGGAGGCTTAGTTAAATATGGATTTTTGTGTA
Alignments
lowQualScore : 111 11111 666666666666666666666666666666
lowQualScore : 4 3 55 11 999 3 5 1 1 11 44444 777 888888888888888888888888888888 1 8 3 5 1 4 3 33
lowQualScore : . . .. .. ... . . . . .. ..... ... .............................. . . . . . . . ..
lowQualScore : 4 6 00 55 222 3 2 6 2 77 33333 777 222222222222222222222222222222 0 0 8 7 9 0 1 33
consensus : TTTTT-TG-GGAGGG--GGNCTTAGCTT-AAATATCATGGATTTTTGCGTACGNCATGTTGTCGCCTNA-ATAGCGCTTTCATTTGTTGAT---------GGA------------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
Reference ( family-1185 ) : TTTTT-TG-GGAGGG--GGNTTTAGCTT-AAATATCATGGATTTTCGCGTACGNCATGTTGTCGCCTNA-ATAGCGCTTTCATTTGTTGAT---------GGA------------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
gi|10 : TTGGAT-CAGATTGACATT-CAGGGGTCAG-CGGTGATTTAATGGGGAT-GCAT-
gi|11 : aTTTTT-TG-GAAGGG--GGCTT--ACTT-AGATATTGTGGATTTTTGCATACAACATGTAATCACCTTC-TAAGCACTTTCAtatgagcatgctgacggaggttcttttata
gi|12 : cat------------------AAGCGTGAATCGG----GACATT-CAGGGGTCAG-CGGTGATATAGTGGGAAT-GCGT-TGGATATTGTGA
gi|13 : GTTTTTGGTT-AAATATCATGGATTTTCGTGCATAGCATGTTGTCGCCTCA-GTAGCACTTTCAgcgcacgca
gi|14 : ccactttttT-CAGTGGTCCA-CAGTGATATAGAGGGGAC-GTGT-AGGGTATTGT
gi|15 : A-CGATGATATAGTGTGGAC-GCGT-GGGGTATTGTtagcacactcaactaaggttcttt
gi|16 : TTT-TGTAGAGGG--GGACTTAG-TT-GAATATCATTGATTTTTGTGTAtagcacgctctctatggttcttta
gi|17 : acTT-GG-GGAGGG--GAAGTTA-CTT-AAATAT---GGATTTTCGCGTAtagc
gi|18 : naccactgcTTTT-TG-GAAAGG--AGGCTTAG-TT-AAAT---ATGGATTTTTGTGTA
gi|19 : cacTTTT-TG-GAAAGG--AGGCTTAG-TT-AAAT---ATGGATTTTTGTGTA
gi|2 : cacTTTTT-TG-GGGGGGTGGGACTTGATAT-AAATATCATGGATTTTTG
gi|2 : TGCTCAA-CGGTGATATATTGGGGAC-GCTT-GAGATATTGTGAtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgctcaacggtgatatattggggacgcttgagatattgtgagtgcgctcactaaggttcttt
gi|20 : ttttttgggggggtgggacttgatataaatatcatggatttttgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTGAAATAATGGGGAC-GCAT-GGGATATTGTGAgtgcgctcactaaggttcttt
gi|21 : TGGGGAC-GCGT-AGGGTATTGTGAgtgtggtcact
gi|3 : G-GGGGGG--GGCTTTA-CTT-AAATATCATGGGTTCTgtacgcttgctaa
gi|3 : ttttttggaaaggTGGTCAA-CAGTGATATAGTGGGGAC-GCGT-AGGGTATTGTGAgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtcaacagtgatatagtggggacgcgtagggtattgtgagcacgttcactaatgtgtt
gi|4 : ttttttggaaagggggggggggctttacttaaatatcatgggttctgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnG-GGGGGG--GGCTTTA-CTT-AAATATTATGCATTTTTGTGCACAACA-GC--TCGCCTGA-ATAGCGTTTGTATTTGTTGATTGGGTTCCAGGAAGTTCTTCTTGATAGTAAAAGCTTGGAT-GGAATTGACAAT-CAGTGGTCAA-CGGAGATATATTTGGGAT-GCAT-GGGGTATTGTgcacgttcactaatgtgtt
gi|5 : ttgg------------------AAGCTTGGAT-TGAATTGACATTTCTGAGGTCAAACGGTGATATAGCGGGGACGGCATGGGGGTATTGTGAtatcacgctcaccgaggttctg
gi|6 : tttggaagaagggacttaaatatatatatattttgtgtataaccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttCACT-TAGGGCTCAA-CAGTGATATAGTTGGGAC-GTGT-GGGGTgtgcgctcacttaa
gi|7 : ttttgggggagtgtaactcggttaaatgtcatggatttttgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTT-TG-GGAGGG--GGTTTTAACTT-AGATATCATGTATTTTTGTGTATATCATATTGTCGCCGGATATAGCGCTTTCATCTGTTGAT---------AGA------------------AAGCATGGAT-GGAATTAGCATT-TAGTGCTCAA-TGGTGATATAGTGGGGAC-GCGT-TGGGTATTGTGA
gi|8 : TTTTT-AG-GGAGGG--GGACTTAG-TT-AAATAT---GGTTTTTCGCATACGTCATGT---CGCCTGG-ATTGTGCTTTTATTTGCTGAT---------GGA------------------
gi|8 : acATAGTGAGGAC-GTAT-TGAGTATTGTGAtttcatagtgaggacgtattgagtattgtgag
gi|9 : actttttagggagggggacttagttaaatatggtttttcgcatacgtcatgtcgcctggattgtgcttttatttgctgatggatttcTTTTTATG-GGAGGG--GGACTT--CTTTGAATATCATGGAATTTTGTGTATGACA---TGTCACCTTG-ATAGAACTTTCATTTGTTGAT---------GAA------------------g
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTTTTGTTGGGGGGGGGGGGGGCCTTGCTCAGATATAATTGATTTTTTTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGTCAATGGTGAAATAGTAGGGGTGTGTGGGGTATTGTGAATGTGCTCGCTAAGGTTCTTTC
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 111 11111 0000000000000000000000000 11
lowQualScore : 3 3 999999 44 4 888 3 5 1 11 00000 777 0000000000000000000000000 33 1 8 3 5 1 4 3 33
lowQualScore : . . ...... .. . ... . . . .. ..... ... ......................... .. . . . . . . . ..
lowQualScore : 6 3 666666 66 2 555 1 9 2 77 33333 777 0000000000000000000000000 88 0 0 8 7 9 0 1 33
consensus : TTTTT-TG-G------GAGGG--GGGCTTAGCTT-AAATATCATGGATTTTTGCGTACGNCATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--AAAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
Reference ( family-1185 ) : TTTTT-TG-G------GAGGG--GGNCTTAGCTT-AAATATCATGGATTTTTGCGTACGNCATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--AAAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
gi|1 : G-G------GGGGG--GGCCTT-GCTC-AGATATAATTGATTTTT
gi|10 : tttttgttgggggTTGGAT-CAGATTGACATT-CAGGGGTCAG-CGGTGATTTAATGGGGAT-GCAT-tttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggtcaatggtgaaatagtaggggtgtgtggggtattgtgaatgtgctcgctaaggttctttc
gi|11 : aTTTTT-TG-G------AAGGG--GG-CTTA-CTT-AGATATTGTGGATTTTTGCATACAACATGTAATCACCTTC-TAAGCACTTTCAtatgagcatgctgacggaggttcttttata
gi|12 : catAAGCGTGAATCGG----GACATT-CAGGGGTCAG-CGGTGATATAGTGGGAAT-GCGT-TGGATATTGTGA
gi|13 : TT-AAATATCATGGATTTTCGTGCATAGCATGTTGTCGCCTCA-GTAGCACTTTCAgcgcacgca
gi|14 : ccactttttgtttttggT-CAGTGGTCCA-CAGTGATATAGAGGGGAC-GTGT-AGGGTATTGT
gi|15 : A-CGATGATATAGTGTGGAC-GCGT-GGGGTATTGTtagcacactcaactaaggttcttt
gi|16 : TTT-TGTA------GAGGG--GGACTTAG-TT-GAATATCATTGATTTTTGTGTAtagcacgctctctatggttcttta
gi|17 : acTT-GG-G------GAGGG--GAAGTTA-CTT-AAATAT---GGATTTTCGCGTAtagc
gi|18 : naccactgcTTTT-TG-G------AAAGG--AGGCTTAG-TT-AAAT---ATGGATTTTTGTGTA
gi|19 : cacTTTT-TG-G------AAAGG--AGGCTTAG-TT-AAAT---ATGGATTTTTGTGTA
gi|2 : cacTTTTT-TG-G------GGGGGTGGGACTTGATAT-AAATATCATGGATTTTTG
gi|2 : TGCTCAA-CGGTGATATATTGGGGAC-GCTT-GAGATATTGTGAtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgctcaacggtgatatattggggacgcttgagatattgtgagtgcgctcactaaggttcttt
gi|20 : ttttttgggggggtgggacttgatataaatatcatggatttttgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTGAAATAATGGGGAC-GCAT-GGGATATTGTGAgtgcgctcactaaggttcttt
gi|21 : TGGGGAC-GCGT-AGGGTATTGTGAgtgtggtcact
gi|3 : TTTTT-TG-GAAAGGGGGGGG--GGGCTTTACTT-AAATATCATGGGTTCTgtacgcttgctaa
gi|3 : TGGTCAA-CAGTGATATAGTGGGGAC-GCGT-AGGGTATTGTGAgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtcaacagtgatatagtggggacgcgtagggtattgtgagcacgttcactaatgtgtt
gi|4 : ttttttggaaagggggggggggctttacttaaatatcatgggttctgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-GG-G------GGGGG--GGGCTTTACTT-AAATATTATGCATTTTTGTGCACAACA-GCT--CGCCTGA-ATAGCGTTTGTATTTGTTGATTGGGTTCCAGGAAGTTCTTCTTGATAGTAAAAGCTTGGAT-GGAATTGACAAT-CAGTGGTCAA-CGGAGATATATTTGGGAT-GCAT-GGGGTATTGTgcacgttcactaatgtgtt
gi|5 : AAGCTTGGAT-TGAATTGACATTTCTGAGGTCAAACGGTGATATAGCGGGGACGGCATGGGGGTATTGTGAtatcacgctcaccgaggttctg
gi|6 : tttggaagaagggacttaaatatatatatattttgtgtataaccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttCACT-TAGGGCTCAA-CAGTGATATAGTTGGGAC-GTGT-GGGGTgtgcgctcacttaa
gi|7 : ttttgggggagtgtaactcggttaaatgtcatggatttttgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTT-TG-G------GAGGG--GGTTTTAACTT-AGATATCATGTATTTTTGTGTATATCATATTGTCGCCGGATATAGCGCTTTCATCTG-------------------------TTGATAG--AAAGCATGGAT-GGAATTAGCATT-TAGTGCTCAA-TGGTGATATAGTGGGGAC-GCGT-TGGGTATTGTGA
gi|8 : TTTTT-AG-G------GAGGG--GGACTTAG-TT-AAATAT---GGTTTTTCGCATACGTCATGT---CGCCTGG-ATTGTGCTTTTATTTG-------------------------CTGATGG--A
gi|8 : acATAGTGAGGAC-GTAT-TGAGTATTGTGAtttcatagtgaggacgtattgagtattgtgag
gi|9 : actttttagggagggggacttagttaaatatggtttttcgcatacgtcatgtcgcctggattgtgcttttatttgctgatggatttcTTTTTATG-G------GAGGG--GGACTT--CTTTGAATATCATGGAATTTTGTGTATGACA---TGTCACCTTG-ATAGAACTTTCATTTG-------------------------TTGATGA--Ag
Alignments
lowQualScore : 111 8888888888888888888888888888888888888888888888888
lowQualScore : 3 2 888888 33 33 777 2 7 2 1 22 5 88888 666 4444444444444444444444444444444444444444444444444 1 8 3 5 1 4 3 33
lowQualScore : . . ...... .. .. ... . . . . .. . ..... ... ................................................. . . . . . . . ..
lowQualScore : 1 9 222222 99 99 666 7 1 7 6 44 7 11111 999 4444444444444444444444444444444444444444444444444 0 0 8 7 9 0 1 33
consensus : TTTTT-TG-G------GAGGG--GG--GCTTAGCTT-AAATATCATGGAT-TTTTGCGTACAAC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--A--------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
Reference ( family-1185 ) : TTTTT-TG-G------GAGGG--GG--GCTTAGCTT-AAATATCATGGAT-TTTTGCGTACGNC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--A--------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
gi|1 : G-G------GGGGG--GG--GCCTTGCTC-AGATATAATTGAT-TTTT
gi|10 : tttttgttggggTTGGAT-CAGATTGACATT-CAGGGGTCAG-CGGTGATTTAATGGGGAT-GCAT-tttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggtcaatggtgaaatagtaggggtgtgtggggtattgtgaatgtgctcgctaaggttctttc
gi|11 : aTTTTT-TT-G------GAAGG--GG--GCTTA-CTT-AGATATTGTGGAT-TTTTGCATACAAC-ATGTAATCACCTTC-TAAGCACTTTCAtatgagcatgctgacggaggttcttttata
gi|12 : ca--------------AAGCGTGAATCGG----GACATT-CAGGGGTCAG-CGGTGATATAGTGGGAAT-GCGT-TGGATATTGTGA
gi|13 : TT-AAATATCATGGAT-TTTCGTGCATAGC-ATGTTGTCGCCTCA-GTAGCACTTTCAgcgcacgca
gi|14 : ccactttttgtttttggT-CAGTGGTCCA-CAGTGATATAGAGGGGAC-GTGT-AGGGTATTGT
gi|15 : A-CGATGATATAGTGTGGAC-GCGT-GGGGTATTGTtagcacactcaactaaggttcttt
gi|16 : TTT-TGTA------GAGGG--GG--ACTTAG-TT-GAATATCATTGAT-TTTTGTGTAtagcacgctctctatggttcttta
gi|17 : acTT-GG-G------GAGGG--GA--AGTTA-CTT-AAATAT---GGAT-TTTCGCGTAtagc
gi|18 : naccactgcTTTT-TG-G------AAAGG--AG--GCTTAG-TT-AAAT---ATGGAT-TTTTGTGTA
gi|19 : cacTTTT-TG-G------AAAGG--AG--GCTTAG-TT-AAAT---ATGGAT-TTTTGTGTA
gi|2 : cacTTTTT-TG-G------GGGGGTGGG--ACTTGATAT-AAATATCATGGAT-TTTTG
gi|2 : TGCTCAA-CGGTGATATATTGGGGAC-GCTT-GAGATATTGTGAtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgctcaacggtgatatattggggacgcttgagatattgtgagtgcgctcactaaggttcttt
gi|20 : ttttttgggggggtgggacttgatataaatatcatggatttttgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTGAAATAATGGGGAC-GCAT-GGGATATTGTGAgtgcgctcactaaggttcttt
gi|21 : TGGGGAC-GCGT-AGGGTATTGTGAgtgtggtcact
gi|3 : TTTTT-TG-GAAAGGGGGGGG--GG--GCTTTACTT-AAATATCATGGGT-TCTgtacgcttgctaa
gi|3 : TGGTCAA-CAGTGATATAGTGGGGAC-GCGT-AGGGTATTGTGAgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtcaacagtgatatagtggggacgcgtagggtattgtgagcacgttcactaatgtgtt
gi|4 : ttttttggaaagggggggggggctttacttaaatatcatgggttctgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-GG-G------GGGGG--GG--GCTTTACTT-AAATATTATGCAT-TTTTGTGCACAAC-A-GCT--CGCCTGA-ATAGCGTTTGTATTTGTTGATTGGGTTCCAGGAAGTTCTTCTTGATAGTAA--------------AAGCTTGGAT-GGAATTGACAAT-CAGTGGTCAA-CGGAGATATATTTGGGAT-GCAT-GGGGTATTGTgcacgttcactaatgtgtt
gi|5 : TT-TG-G------AAGAA--GG--G----ACTT-AAATAT-ATATATATTTTGTGTATAACCATNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------------------------NNNNNNN--NNNNNNNNNNCATTTAAGCTTGGAT-TGAATTGACATTTCTGAGGTCAAACGGTGATATAGCGGGGACGGCATGGGGGTATTGTGAtatcacgctcaccgaggttctg
gi|6 : TTT-TG-G------GGGAG--TGTAACTCGG-TT-AAATGTCATGGAT-TTTTGgtgcgctcacttaa
gi|6 : CACT-TAGGGCTCAA-CAGTGATATAGTTGGGAC-GTGT-GGGGTttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacttagggctcaacagtgatatagttgggacgtgtggggt
gi|7 : ttttgggggagtgtaactcggttaaatgtcatggatttttgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTT-TG-G------GAGGG--GG--TTTTAACTT-AGATATCATGTAT-TTTTGTGTATATC-ATATTGTCGCCGGATATAGCGCTTTCATCTG-------------------------TTGATAG--A--------------AAGCATGGAT-GGAATTAGCATT-TAGTGCTCAA-TGGTGATATAGTGGGGAC-GCGT-TGGGTATTGTGA
gi|8 : TTTTT-AG-G------GAGGG--GG--ACTTAG-TT-AAATAT---GGTT-TTTCGCATACGTC-ATGT---CGCCTGG-ATTGTGCTTTTATTTG-------------------------CTGATGG--A--------------
gi|8 : acATAGTGAGGAC-GTAT-TGAGTATTGTGAtttcatagtgaggacgtattgagtattgtgag
gi|9 : actttttagggagggggacttagttaaatatggtttttcgcatacgtcatgtcgcctggattgtgcttttatttgctgatggatttcTTTTTATG-G------GAGGG--GG--ACTT--CTTTGAATATCATGGAA-TTTTGTGTATGAC-A---TGTCACCTTG-ATAGAACTTTCATTTG-------------------------TTGATGA--A--------------g
Alignments
lowQualScore : 111 8888888888888888888888888888888888888888888888888
lowQualScore : 3 2 888888 33 33 777 2 7 2 1 1 5 88888 666 4444444444444444444444444444444444444444444444444 1 8 3 5 1 4 3 33
lowQualScore : . . ...... .. .. ... . . . . . . ..... ... ................................................. . . . . . . . ..
lowQualScore : 1 9 222222 99 99 666 7 1 7 6 2 0 11111 999 4444444444444444444444444444444444444444444444444 0 0 8 7 9 0 1 33
consensus : TTTTT-TG-G------GAGGG--GG--GCTTAGCTT-AAATATCATGGAT-TTTTGCGTATAAC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--A--------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
Reference ( family-1185 ) : TTTTT-TG-G------GAGGG--GG--GCTTAGCTT-AAATATCATGGAT-TTTTGCGTACAAC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--A--------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
gi|1 : G-G------GGGGG--GG--GCCTTGCTC-AGATATAATTGAT-TTTT
gi|10 : tttttgttggggTTGGAT-CAGATTGACATT-CAGGGGTCAG-CGGTGATTTAATGGGGAT-GCAT-tttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggtcaatggtgaaatagtaggggtgtgtggggtattgtgaatgtgctcgctaaggttctttc
gi|11 : aTTTTT-TT-G------GAAGG--GG--GCTTA-CTT-AGATATTGTGGAT-TTTTGCATACAAC-ATGTAATCACCTTC-TAAGCACTTTCAtatgagcatgctgacggaggttcttttata
gi|12 : ca--------------AAGCGTGAATCGG----GACATT-CAGGGGTCAG-CGGTGATATAGTGGGAAT-GCGT-TGGATATTGTGA
gi|13 : TT-AAATATCATGGAT-TTTCGTGCATAGC-ATGTTGTCGCCTCA-GTAGCACTTTCAgcgcacgca
gi|14 : ccactttttgtttttggT-CAGTGGTCCA-CAGTGATATAGAGGGGAC-GTGT-AGGGTATTGT
gi|15 : A-CGATGATATAGTGTGGAC-GCGT-GGGGTATTGTtagcacactcaactaaggttcttt
gi|16 : TTT-TGTA------GAGGG--GG--ACTTAG-TT-GAATATCATTGAT-TTTTGTGTATAGC-tagcacgctctctatggttcttta
gi|17 : acTT-GG-G------GAGGG--GA--AGTTA-CTT-AAATAT---GGAT-TTTCGCGTA
gi|18 : naccactgcTTTT-TG-G------AAAGG--AG--GCTTAG-TT-AAAT---ATGGAT-TTTTGTGTA
gi|19 : cacTTTT-TG-G------AAAGG--AG--GCTTAG-TT-AAAT---ATGGAT-TTTTGTGTA
gi|2 : cacTTTTT-TG-G------GGGGGTGGG--ACTTGATAT-AAATATCATGGAT-TTTTG
gi|2 : TGCTCAA-CGGTGATATATTGGGGAC-GCTT-GAGATATTGTGAtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgctcaacggtgatatattggggacgcttgagatattgtgagtgcgctcactaaggttcttt
gi|20 : ttttttgggggggtgggacttgatataaatatcatggatttttgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTGAAATAATGGGGAC-GCAT-GGGATATTGTGAgtgcgctcactaaggttcttt
gi|21 : TGGGGAC-GCGT-AGGGTATTGTGAgtgtggtcact
gi|3 : TTTTT-TG-GAAAGGGGGGGG--GG--GCTTTACTT-AAATATCATGGGT-TCTgtacgcttgctaa
gi|3 : TGGTCAA-CAGTGATATAGTGGGGAC-GCGT-AGGGTATTGTGAgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtcaacagtgatatagtggggacgcgtagggtattgtgagcacgttcactaatgtgtt
gi|4 : ttttttggaaagggggggggggctttacttaaatatcatgggttctgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-GG-G------GGGGG--GG--GCTTTACTT-AAATATTATGCAT-TTTTGTGCACAAC-A-GCT--CGCCTGA-ATAGCGTTTGTATTTGTTGATTGGGTTCCAGGAAGTTCTTCTTGATAGTAA--------------AAGCTTGGAT-GGAATTGACAAT-CAGTGGTCAA-CGGAGATATATTTGGGAT-GCAT-GGGGTATTGTgcacgttcactaatgtgtt
gi|5 : TT-TG-G------AAGAA--GG--G----ACTT-AAATAT-ATATATATTTTGTGTATAACCATNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------------------------NNNNNNN--NNNNNNNNNNCATTTAAGCTTGGAT-TGAATTGACATTTCTGAGGTCAAACGGTGATATAGCGGGGACGGCATGGGGGTATTGTGAtatcacgctcaccgaggttctg
gi|6 : TTT-TG-G------GGGAG--TGTAACTCGG-TT-AAATGTCATGGAT-TTTTGgtgcgctcacttaa
gi|6 : CACT-TAGGGCTCAA-CAGTGATATAGTTGGGAC-GTGT-GGGGTttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacttagggctcaacagtgatatagttgggacgtgtggggt
gi|7 : ttttgggggagtgtaactcggttaaatgtcatggatttttgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTT-TG-G------GAGGG--GG--TTTTAACTT-AGATATCATGTAT-TTTTGTGTATATC-ATATTGTCGCCGGATATAGCGCTTTCATCTG-------------------------TTGATAG--A--------------AAGCATGGAT-GGAATTAGCATT-TAGTGCTCAA-TGGTGATATAGTGGGGAC-GCGT-TGGGTATTGTGA
gi|8 : TTTTT-AG-G------GAGGG--GG--ACTTAG-TT-AAATAT---GGTT-TTTCGCATACGTC-ATGT---CGCCTGG-ATTGTGCTTTTATTTG-------------------------CTGATGG--A--------------
gi|8 : acATAGTGAGGAC-GTAT-TGAGTATTGTGAtttcatagtgaggacgtattgagtattgtgag
gi|9 : actttttagggagggggacttagttaaatatggtttttcgcatacgtcatgtcgcctggattgtgcttttatttgctgatggatttcTTTTTATG-G------GAGGG--GG--ACTT--CTTTGAATATCATGGAA-TTTTGTGTATGAC-A---TGTCACCTTG-ATAGAACTTTCATTTG-------------------------TTGATGA--A--------------g
Alignments
lowQualScore : 111 8888888888888888888888888888888888888888888888888
lowQualScore : 3 2 888888 33 33 777 2 7 2 1 1 5 88888 666 4444444444444444444444444444444444444444444444444 1 8 3 5 1 4 3 33
lowQualScore : . . ...... .. .. ... . . . . . . ..... ... ................................................. . . . . . . . ..
lowQualScore : 1 9 222222 99 99 666 7 1 7 6 2 0 11111 999 4444444444444444444444444444444444444444444444444 0 0 8 7 9 0 1 33
consensus : TTTTT-TG-G------GAGGG--GG--GCTTAGCTT-AAATATCATGGAT-TTTTGCGTATAAC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--A--------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
Reference ( family-1185 ) : TTTTT-TG-G------GAGGG--GG--GCTTAGCTT-AAATATCATGGAT-TTTTGCGTATAAC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--A--------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
gi|1 : G-G------GGGGG--GG--GCCTTGCTC-AGATATAATTGAT-TTTT
gi|10 : tttttgttggggTTGGAT-CAGATTGACATT-CAGGGGTCAG-CGGTGATTTAATGGGGAT-GCAT-tttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggtcaatggtgaaatagtaggggtgtgtggggtattgtgaatgtgctcgctaaggttctttc
gi|11 : aTTTTT-TT-G------GAAGG--GG--GCTTA-CTT-AGATATTGTGGAT-TTTTGCATACAAC-ATGTAATCACCTTC-TAAGCACTTTCAtatgagcatgctgacggaggttcttttata
gi|12 : ca--------------AAGCGTGAATCGG----GACATT-CAGGGGTCAG-CGGTGATATAGTGGGAAT-GCGT-TGGATATTGTGA
gi|13 : TT-AAATATCATGGAT-TTTCGTGCATAGC-ATGTTGTCGCCTCA-GTAGCACTTTCAgcgcacgca
gi|14 : ccactttttgtttttggT-CAGTGGTCCA-CAGTGATATAGAGGGGAC-GTGT-AGGGTATTGT
gi|15 : A-CGATGATATAGTGTGGAC-GCGT-GGGGTATTGTtagcacactcaactaaggttcttt
gi|16 : TTT-TGTA------GAGGG--GG--ACTTAG-TT-GAATATCATTGAT-TTTTGTGTATAGC-tagcacgctctctatggttcttta
gi|17 : acTT-GG-G------GAGGG--GA--AGTTA-CTT-AAATAT---GGAT-TTTCGCGTA
gi|18 : naccactgcTTTT-TG-G------AAAGG--AG--GCTTAG-TT-AAAT---ATGGAT-TTTTGTGTA
gi|19 : cacTTTT-TG-G------AAAGG--AG--GCTTAG-TT-AAAT---ATGGAT-TTTTGTGTA
gi|2 : cacTTTTT-TG-G------GGGGGTGGG--ACTTGATAT-AAATATCATGGAT-TTTTG
gi|2 : TGCTCAA-CGGTGATATATTGGGGAC-GCTT-GAGATATTGTGAtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgctcaacggtgatatattggggacgcttgagatattgtgagtgcgctcactaaggttcttt
gi|20 : ttttttgggggggtgggacttgatataaatatcatggatttttgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTGAAATAATGGGGAC-GCAT-GGGATATTGTGAgtgcgctcactaaggttcttt
gi|21 : TGGGGAC-GCGT-AGGGTATTGTGAgtgtggtcact
gi|3 : TTTTT-TG-GAAAGGGGGGGG--GG--GCTTTACTT-AAATATCATGGGT-TCTgtacgcttgctaa
gi|3 : TGGTCAA-CAGTGATATAGTGGGGAC-GCGT-AGGGTATTGTGAgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtcaacagtgatatagtggggacgcgtagggtattgtgagcacgttcactaatgtgtt
gi|4 : ttttttggaaagggggggggggctttacttaaatatcatgggttctgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-GG-G------GGGGG--GG--GCTTTACTT-AAATATTATGCAT-TTTTGTGCACAAC-A-GCT--CGCCTGA-ATAGCGTTTGTATTTGTTGATTGGGTTCCAGGAAGTTCTTCTTGATAGTAA--------------AAGCTTGGAT-GGAATTGACAAT-CAGTGGTCAA-CGGAGATATATTTGGGAT-GCAT-GGGGTATTGTgcacgttcactaatgtgtt
gi|5 : TT-TG-G------AAGAA--GG--G----ACTT-AAATAT-ATATATATTTTGTGTATAACCATNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------------------------NNNNNNN--NNNNNNNNNNCATTTAAGCTTGGAT-TGAATTGACATTTCTGAGGTCAAACGGTGATATAGCGGGGACGGCATGGGGGTATTGTGAtatcacgctcaccgaggttctg
gi|6 : TTT-TG-G------GGGAG--TGTAACTCGG-TT-AAATGTCATGGAT-TTTTGgtgcgctcacttaa
gi|6 : CACT-TAGGGCTCAA-CAGTGATATAGTTGGGAC-GTGT-GGGGTttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacttagggctcaacagtgatatagttgggacgtgtggggt
gi|7 : ttttgggggagtgtaactcggttaaatgtcatggatttttgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTT-TG-G------GAGGG--GG--TTTTAACTT-AGATATCATGTAT-TTTTGTGTATATC-ATATTGTCGCCGGATATAGCGCTTTCATCTG-------------------------TTGATAG--A--------------AAGCATGGAT-GGAATTAGCATT-TAGTGCTCAA-TGGTGATATAGTGGGGAC-GCGT-TGGGTATTGTGA
gi|8 : TTTTT-AG-G------GAGGG--GG--ACTTAG-TT-AAATAT---GGTT-TTTCGCATACGTC-ATGT---CGCCTGG-ATTGTGCTTTTATTTG-------------------------CTGATGG--A--------------
gi|8 : acATAGTGAGGAC-GTAT-TGAGTATTGTGAtttcatagtgaggacgtattgagtattgtgag
gi|9 : actttttagggagggggacttagttaaatatggtttttcgcatacgtcatgtcgcctggattgtgcttttatttgctgatggatttcTTTTTATG-G------GAGGG--GG--ACTT--CTTTGAATATCATGGAA-TTTTGTGTATGAC-A---TGTCACCTTG-ATAGAACTTTCATTTG-------------------------TTGATGA--A--------------g
blockSeqs : A T AAAGGG TG TA GAT T T A T G C TGTTG GAT NNNNNNNNNNNNNNNNNCATTT G C A T G A G GG
blockSeqs : . . . . . TAC . C . T G . TNNNN CA TTGATAGA T . A . T . . A
blockSeqs : . . . . . TAC . C . C A . TATTG GA CTGATGGA T . A . T . . G
blockSeqs : . . . . . AAC . C . T A . GCT NN TTGATGAA A . . . T . . G
blockSeqs : . . . . . AC . C . T T . TGT GG . T . . G
blockSeqs : . . . . . AG . T . T T . TG TG . A . . A
blockSeqs : . . . . . AC . C . T A . G . . A
blockSeqs : . . . . . AG . C . T T . . G
blockSeqs : . . . . . AG . C . C . . G
blockSeqs : . . . . . AC . . . T . T
blockSeqs : . . . . . GG . . . . T
blockSeqs : . . . . . AG . . . .
blockSeqs : . . . . C . . .
blockSeqs : . . .
blockSeqCons : AG* TTGATGGA*****************************************
originalCons : TTTTT-TG-G------GAGGG--GG--GCTTAGCTT-AAATATCATGGAT-TTTTGCGTATAAC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--A--------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
finalCons : TTTTT-TG-G------GAGGG--GG--GCTTAG-TT-AAATATCATGGAT-TTTTGCGTATAAC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTGTTGATGGA-----------------------------------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
Alignments
lowQualScore : 8888888888888888888888888888888888888888888888888
lowQualScore : 3 3 888888 44 44 7777 2 2 4 2 1 1 5 88888 666 4444444444444444444444444444444444444444444444444 1 8 3 5 1 3 2 2
lowQualScore : . . ...... .. .. .... . . . . . . . ..... ... ................................................. . . . . . . . .
lowQualScore : 1 1 888888 22 22 5555 9 6 8 9 6 2 0 11111 999 4444444444444444444444444444444444444444444444444 0 0 8 7 9 6 9 9
consensus : TTTTT-TG-G------GAGGG--GG--GCTT-AN-T-TAAATATCATGGAT-TTTTGCGTATAAC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--A--------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
Reference ( family-1185 ) : TTTTT-TG-G------GAGGG--GG--GCTT-AG-T-TAAATATCATGGAT-TTTTGCGTATAAC-ATGTTGTCGCCTNA-ATAGCGCTTTCATTTG-------------------------TTGATGG--A--------------AAGCTTGGAT-GGAATTGACATT-CAGTGGTCAA-CGGTGATATAGTGGGGAC-GCGT-GGGGTATTGTGA
gi|1 : GGTCAA-TGGTGAAATAGTAGGGGT-GTGT-GGGGTATTGTGA
gi|10 : tttttgttggggggggggggggccttgctcagatataattgattttttttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagTTGGAT-CAGATTGACATT-CAGGGGTCAG-CGGTGATTTAATGGGGAT-GCAT-atgtgctcgctaaggttctttc
gi|11 : aTTTTT-TT-G------GAAGG--GG--GCTT-AC-T-TAGATATTGTGGAT-TTTTGCATACAAC-ATGTAATCACCTTC-TAAGCACTTTCAtatgagcatgctgacggaggttcttttata
gi|12 : ca--------------AAGCGTGAATCGG----GACATT-CAGGGGTCAG-CGGTGATATAGTGGGAAT-GCGT-TGGATATTGTGA
gi|13 : TT-GG-T-TAAATATCATGGAT-TTTCGTGCATAGC-ATGTTGTCGCCTCA-GTAGCACTTTCAgcgcacgca
gi|14 : ccactttttgtttT-CAGTGGTCCA-CAGTGATATAGAGGGGAC-GTGT-AGGGTATTGT
gi|15 : A-CGATGATATAGTGTGGAC-GCGT-GGGGTATTGTtagcacactcaactaaggttcttt
gi|16 : TTT-TGTA------GAGGG--GG--ACTT-AG-T-TGAATATCATTGAT-TTTTGTGTATAGC-tagcacgctctctatggttcttta
gi|17 : acTT-GG-G------GAGGG--GA--AGTT-AC-T-TAAAT---ATGGAT-TTTCGCGTA
gi|18 : naccactgcTTTT-TG-G------AAAGG--AG--GCTT-AG-T-TAAAT---ATGGAT-TTTTGTGTA
gi|19 : cacTTTT-TG-G------AAAGG--AG--GCTT-AG-T-TAAAT---ATGGAT-TTTTGTGTA
gi|2 : cacTTTTT-TG-G------GGGGGTGGG--ACTT-GA-TATAAATATCATGGAT-TTTTG
gi|2 : TGCTCAA-CGGTGATATATTGGGGAC-GCTT-GAGATATTGTGAtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgctcaacggtgatatattggggacgcttgagatattgtgagtgcgctcactaaggttcttt
gi|20 : ttttttgggggggtgggacttgatataaatatcatggatttttgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTGAAATAATGGGGAC-GCAT-GGGATATTGTGAgtgcgctcactaaggttcttt
gi|21 : TGGGGAC-GCGT-AGGGTATTGTGAgtgtggtcact
gi|3 : TTTTT-TG-GAAAGGGGGGGG--GG--GCTTTAC-T-TAAATATCATGGGT-TCTgtacgcttgctaa
gi|3 : TGGTCAA-CAGTGATATAGTGGGGAC-GCGT-AGGGTATTGTGAgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtcaacagtgatatagtggggacgcgtagggtattgtgagcacgttcactaatgtgtt
gi|4 : ttttttggaaagggggggggggctttacttaaatatcatgggttctgttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-GG-G------GGGGG--GG--GCTTTAC-T-TAAATATTATGCAT-TTTTGTGCACAAC-A-GCT--CGCCTGA-ATAGCGTTTGTATTTGTTGATTGGGTTCCAGGAAGTTCTTCTTGATAGTAA--------------AAGCTTGGAT-GGAATTGACAAT-CAGTGGTCAA-CGGAGATATATTTGGGAT-GCAT-GGGGTATTGTgcacgttcactaatgtgtt
gi|5 : TT-TG-G------AAGAA--GG--G----AC-T-TAAATAT-ATATATATTTTGTGTATAACCATNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------------------------NNNNNNN--NNNNNNNNNNCATTTAAGCTTGGAT-TGAATTGACATTTCTGAGGTCAAACGGTGATATAGCGGGGACGGCATGGGGGTATTGTGAtatcacgctcaccgaggttctg
gi|6 : TTT-TG-G------GGGAG--TGTAACTC-GG-T-TAAATGTCATGGAT-TTTTGgtgcgctcacttaa
gi|6 : CACT-TAGGGCTCAA-CAGTGATATAGTTGGGAC-GTGT-GGGGTttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacttagggctcaacagtgatatagttgggacgtgtggggt
gi|7 : ttttgggggagtgtaactcggttaaatgtcatggatttttgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTT-TG-G------GAGGG--GG--TTTT-AACT-TAGATATCATGTAT-TTTTGTGTATATC-ATATTGTCGCCGGATATAGCGCTTTCATCTG-------------------------TTGATAG--A--------------AAGCATGGAT-GGAATTAGCATT-TAGTGCTCAA-TGGTGATATAGTGGGGAC-GCGT-TGGGTATTGTGA
gi|8 : TTTTT-AG-G------GAGGG--GG--ACTT-AG-T-TAAATAT---GGTT-TTTCGCATACGTC-ATGT---CGCCTGG-ATTGTGCTTTTATTTG-------------------------CTGATGG--A--------------
gi|8 : acATAGTGAGGAC-GTAT-TGAGTATTGTGAtttcatagtgaggacgtattgagtattgtgag
gi|9 : actttttagggagggggacttagttaaatatggtttttcgcatacgtcatgtcgcctggattgtgcttttatttgctgatggatttcTTTTTATG-G------GAGGG--GG--ACTT-CT-T-TGAATATCATGGAA-TTTTGTGTATGAC-A---TGTCACCTTG-ATAGAACTTTCATTTG-------------------------TTGATGA--A--------------g