lowQualScore : 11111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 11111111 111 1111111 22222222 11 55555555555555555555555555555555555555555555555555555555555 1 1 111111 2222 1 111 111111 33333 222 888888888888888888 2222222 888888888888888888888888888888888888888888888 22 1 1111111 1111 3333 222222 111 555555555555555555555555555555555555555555555555555555555555 222222222222222222222222222222222222222 222222222222 11
lowQualScore : 33 2 333 5 0 66666666 4 1 8 4 4 777 5 88 5 222 5555555 33333333 3 8888 0 3 0 2 22 0 99999999999999999999999999999999999999999999999999999999999 4 1 5 55 555555 9 6666 1 777 7 2 4 0 77 555 555555 0 55555 000 5 5 3 5 333 5 8888 55 0 111111111111111111 888 1 0 8888888 55 5 333333333333333333333333333333333333333333333 22 77 77 4 00 5 1 8888 1111111 3333 5 77 6 1111 333333 6 2 0 3 111 888888888888888888888888888888888888888888888888888888888888 0 8 3 2 6 2 999999999999999999999999999999999999999 2 33 666666666666 0 88 2 7 33 33 33 2 9
lowQualScore : .. . ... . . ........ . . . . . ... . .. . ... ....... ........ . .... . . . . .. . ........................................................... . . . .. ...... . .... . ... . . . . .. ... ...... . ..... ... . . . . ... . .... .. . .................. ... . . ....... .. . ............................................. .. .. .. . .. . . .... ....... .... . .. . .... ...... . . . . ... ............................................................ . . . . . . ....................................... . .. ............ . .. . . .. .. .. . .
lowQualScore : 88 2 888 0 3 11111111 0 6 2 4 4 222 0 44 0 000 2222222 66666666 8 6666 1 2 2 1 33 7 55555555555555555555555555555555555555555555555555555555555 7 7 3 55 555555 0 0000 0 777 0 5 2 1 99 777 999999 8 66666 333 7 7 0 7 666 3 3333 99 7 444444444444444444 888 4 2 1111111 99 0 999999999999999999999999999999999999999999999 77 99 99 3 11 0 7 9999 8888888 5555 7 44 0 8888 000000 4 0 2 2 222 666666666666666666666666666666666666666666666666666666666666 5 6 7 9 3 7 444444444444444444444444444444444444444 4 22 333333333333 5 55 5 1 77 77 77 7 0
consensus : AAATCATTTAATA--TCCATTGTCTT---GAT-GAAATTACGG--------CGATTTT-GATTGGCCGAAAAA-TTC-GTTTGATTTCN-GCA-TC-A-AAG-AAAACCT-----A-CGAGTCGC-TTCCGCCGTTCCCACGACACAACCAGTGTTCAGCGTCTCCTC-G-AC------------A---CAAT----GCANCA------------------T-CACATCGAGTCACCGCTTGTCCTCTTTCT--TCGTATCTAATTCA-TCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCNT-TNAGTTCA---CCTTTTAACCANTGC-ACC-TTTAATTTGGC-GTCCAATCCATTT--AAT-TCTGCTCA-TAA--C-------TTCC---TGACCTGAACNCG----CAGCCATTTT-GAATGTA-----G-N-GT----T--TG----TTTC-GTTGTTAC-----ATGTACATG--TAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTACTATTT-G-AAACAT------AATNAAATGATA-AAAA----------T-AA------TCTT---------------------TTC------------AAAGGGAAAATTGGAC-GGAAAA-CTT--TTTCGTCAATGCG-C-------AT--TG-ATG---AAGT-T--TTC-CG--TCC-AATTTCCCCT-TT-GATACCGC--C--ATC--AAG-AAAAGAGAATTC
Reference ( gi|3 ) : AAATCATTTAATA--TTTATTGTCTT---GAT-GAAATTACAG--------CGATTTT-GATTGGCTGAAAAA-TTC-GTTTGATTTTT-GCA-TT-A-ACG-AAAACCT-----A-CGAGTCGCTTTCCACTATTCCCACGACACAACCAGTGTTCAATATCTCCTCAA-AC------------A---CAAT----GCAACA------------------TACACATCGAGTCATCGCTTGTCTTCTCCCT--TCATATCTGATTCA-CATTTTAACCATTACACCTTTAATATGGTGTCCAATCCATTT--AAT---TCTGCTCCT-TCNGTTCA---CATTTTAACCATTAC-ACC-TTTAATTTGGT-GTCCAATCCATTT--AAT-TCTGCTC-------C-------TTCC---TGACCTGAACGTG----CAGCCATTTT-GAATGTA-----G-A-GT----T--TG----TTTC-ATTTTTAC-----ATGTACATA--TAT--TCCTACGCGTGATGTCAAAAACGTTAATTAAAGCTT----TT--TCATGAGAGAAACTAT-TTGTTTTGCTATTT-ACAAACAT------AATCAGATGATA-AGAA----------T---------TCTT---------------------TTC------------AAAGGGAGAATTGGGC-GAAAAA-CTT--TTTTATCAATGCG-T-------AT--TG-AGG---AAGT-T--TTG-CG--CCC-ATTTTCCCCG-TT-GATACGGC--C--ATC--AAG-AAAAAATAATTC
gi|1 : AAATCATTTTATAAATCCGTTTTCTTC--G---GACATT-------------TATTTC-GTTTGTTCTAAAAA-TGC-ATTTGATTTTG-ACACTC-A-ACG-AAAACCTTTGAAA-TGAGT-GCAT--CGC---TCGTAAGATACAACCAATGCTCGGCATCTC---------------------------T----ACATCA------------------T--TCATCGAGGCAGCGCTTGTTATCTTTCTAATC--ATCTTATTCATCA-TTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AAC---TCTGTTTCA-T-AATTGA---C---TTAAACA-TACTACCATCTGA-GTAGT-GTT--ATTGTTTT--AA-----G-TA-------G-------TTCT---TAA---------G----TAG---TTTTAGAATGCA-----T-ATCT----T--TG----TTTA-AGTGGTACCTACTGTGTGCATATGTAT--TCGTAAGCGGCATTTTAAAAAGGCCAATTAAAGCCT----TT--TCATAAGAAAAAGTAT-TT
gi|23 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaAAATCATTTAATT--TTCATTGTCTT---GAT-GAAATTACAGCAGTACGACGATTTT-GATTGGCCAAAA
gi|20 : ATCATTTAATA--TTCATAGTCTTTAAAAT-GTAATTACAG--------CAATTTTTGATGGGCAGCAAAA-TTC-GTTTGATTg
gi|6 : TTAATA--TCTATTGTCTT---GAC-GAAATTACAG--------CGAATTT-GAATGGCCAACAAA-TTC-GTTTAGATTTC-GCA-AT-ACAAGTAAAACCT-----ATCGAGTCGC-TTCCACCATTCCCGCGACACAGCCA-----CAG------CTTAC-AC------------C---GAAT--------------------------------CACCG-CTCAGCGCTGGTTCTCTTTCT--TCTTATCTAATTCT-TCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GAT---TCTGCCCa
gi|4 : tcactataacgtcacatcatttaatatttattatgttaaTATCTT---CAT-TAAATTACGG--------CGATTTA-TATTG-CCGAAAAG-ACC-GTTTGATTTCG-GCA-TC-A-AGG-AAATCAT-----A-TTAGTCGCTTTCCACCGTTCCTATGACACAACCAGTGGCCAATGTCTCC-------------------------------GCAGCA------------------T--ACATGGAGTCA-CGC--GTCCTCTTACT--TCA---------------TTTAAC-----CAGCTTTAATTTGGCGCCCAATCCATTTAAAAT---T-TGCTCAT-TAAGTaataacttctaagtgacctgatctcacagccattttgaatgaagtgttgtttttattgttacaataaatgtattcctacgcgccattttaaaaaaaaaacaacttgagattaatgatgagagaaact
gi|11 : GTCTT---AAT-AAAATTATAG--------TGATTAT-AAATAGCAGAAAA---TCAGTTTGATTTCT-ACA-TT-A-AAA-AAAACCC-----A-CAAGCCGCATTACCCCATTCCCACGACACCGCCAGTGTCCAATGTCTCCTCCA-AC------------A---CAAT----GCAACA------------------T-C-CATCGAGGCActttctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|2 : TT---GATAGAAATTACGA--------CGATTTC-GATTGACCGAAATA-TTC-GTTTGATTTCT-GCA-TC-A-AAG-TAAACCT-----G-AGAG------TCCGCTAT--CCAC--C---ACCGGTGTTCAACATCTCCGCAGCAC------------ACACCAATCACCGCAGCACACACTGAATCACCGCAGCACACACCGAATCACCGCCTGCCCTCTCCCT--AAACATTTAATTCA-TCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TAT---TCTGCTCc
gi|8 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcat---GAT-TAAATAATGG--------CGATTTT-GATTGGCCGAAAAAATTC-GTTTGATTTCT-ACA-TG-A-AAG-AAAACCT-----A-CGA-----TGTTCACTA-------------ACTAGTGATCAG-AT-TCCTCTA-ACCCCACCCCCCTCA---CAAT----GCACCA--------------------CACATCGAGTCTCCGCTTGTC--CTCTTT--TTGTATCTAATTCA-TCTTCCAACCATTGCACCTTTAATTT--TG--CATTCTGCTC--AATA--TCTCCTCaataactctacctagcctgaccacacggccattttggatgtacatatgtagctagtgttgctgttttcattgttatgtattcctacgcgtcatttcaaaaacgttgattaaagtattttgatgtgggaaactatttgttttactattaagtatttaaaaaattaaatgatataaaatgaatcttatcattggaaaaattggacggaaaatcttctcatcaatgcatcacgctcattgatacagttttcctttgacacagccatcaacaaaagaattc
gi|18 : CGG--------CGATTTT-GATTGGCCGAAAAA-TTC-GTTTGATTCCG-GCA-TC-A-AAG-AAAACCT-----G-CGAATCGCTTTCCCCCGTTCCCACGACACAATCTGTGTTCAGCGTCTtagacctgaacaaacagcgacttggaatgtagtttgtcgttttcattgttact
gi|5 : ttTTTT-GCTTGTCCTAAACA-GTC-GTTTGATTTTTGGCA-TCGA-AC--AAGAGCT-----C-CGAG-------------TTCCTACGACAATACCAACGT
gi|10 : tttgccttaatttgatagaaatctagtgtcaaaccattttttgtgaagtgtattttaataaaacccagctagactactttgttgacatcggtttaagttactgcaatgtcataatgaatacccagtcattccatattggttgcaaaattgttcatgagaaatatattttactgtatcaaataccgaagatgtaaagataaataaattgtaagatgcacatcaatctgtatgctgacaacaagacctatattataaattattTCACCGCTTGTCATCTTTCT--TCGTATCTAATTTA-TTTTTTAACCAATGCACCTTTAATTTGATGTTAAATCCATTT--AAC---TCTACctccacaacttaaagtgatacactgcttgtcctgttagttatcttatttatcttatag
gi|7 : CATTT--AGTCCCTCTTCTCTTCTCCGA-CAATCCATCCTAACCATT-C-ACC-TC-AATT--GTCGTCCACTC-ATT----AT-TCTGGCC-------CAATAACTCTCC---TGACCTGAACGCA----CAGACATT----GATGT--------G-GT----T--GG----GTTA-GT-----------ATGCAAATA---ATGATCCTA-AAGCCAT---AAAAA---TAATTCAAG--T----TT--TGATGACTGAAAACATCTTG-ATTACTATTCAATAAACAT------AATTAAATAA-A-AAAA----------TCAAATCGACTCGT---------------------TCCTAATGCGGATCTAAGGAGAAAATTGGAC-G-AAAA-CTT--TTC-----ATG-----------AT-----------ACGT-T--TT--CG--CCA-AAGGTCC----TT-GCTACTGC--CAAATCTAAAG-AAAAActgatatgaactgaaaatagcgttgaacattattttcattgttacgtaccaatatcgctaattgctatttcgaaaacgttaattaaaaaaatttaatgagagaaactat
gi|2 : T-TTAATTCA---TCTTTTAAACAGTGC-ACC-TTTAATTTGGT-GTCTAATTTATAT--TAT-TCTGCTCAATAACTC-------TACC---TAGCCTGACCACA----CGGCCATTTT-GGATGTACATATGTA-GC----TAGTG----TTGCTGTTTTCAT------TGT-TATG--TAT--TCCTACGCGTCATTTCAAAAACGTTGATTAAAGTAT----TT--TGATGTGGGAAACTAT-TTGTTTTACTATT----AAGTATTTAAAAAATTAAATGATATAAAA----------TGAA------TCTT---------------------ATC------------ATTGGAAAAATTGGAC-GGAAAA-TCT--TCTCATCAATGCA-TCACGCTCAT--TG-ATA---CAGT-T--TT-----------------CCT-TT-GACACAGC--C--ATC--AAC-AAAAG--AATTCcacatctta
gi|4 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatttgatagaaattacgacgatttcgattgaccgaaatattcgtttgatttctgcatcaaagtaaacctgagagtccgctatccaccaccggtgttcaacatctccgcagcacacaccaatcaccgcagcacacactgaatcaccgcagcacacaccgaatcaccgcctgccctctccctaaacaTTCA------TTTAACCAG------C-TTTAATTTGGC-GCCCAATCCATTTAAAAT-T-TGCTCATTAAGTC-------TTTC---TATCCTGAACTCG----CGGCCACTTT-G
gi|8 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctcttacTTCA---TCTTCCAACCATTGC-ACC-TTTAATTT--T-G--CATTCTGCTC--AATATCT-----------C-------CTCT---AGACCTGAACAAA----CAGCGACTTG-GAATGT--------A-GT----T--TGTCGTTTTC-ATTGTTAC-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|6 : gattaaataatggcgattttgattggccgaaaaaattcgtttgatttctacatgaaagaaaacctacgatgttcactaactagtgatcagattcctctaaccccacccccctcacaatgcaccacacatcgagtctccgcttgtcctctttttgtatctaaTTTTAACCACTTC-TCC-TTTGATTTGGC-TTTCAATCCATTT--GAT-TCTGCCCAATAA--C-------TTCTAAGTGACCTGATCTCA----CAGCCATTTT-GAATGAA-----G-T-GT----T--GT----TTTT-ATTGTTAC-----A-ATAAATG--TAT--TCCTACGCGCCATTTTAAAAA----AAAAACAACTTGAGATTAATGATGAGAGAAACTt
gi|10 : tcactataacgtcacatcatttaatatttattatgttaattaatatctattgtcttgacgaaattacagcgaatttgaatggccaacaaattcgtttagatttcgcaatacaagtaaaacctatcgagtcgcttccaccattcccgcgacacagccacagcttacaccgaatcaccgctcagcgctggttctctttcttcttatctaattcttcTTTTAACCAATGC-ACC-TTTAATTTGAT-GTTAAATCCATTT--AAC-TCTA--------------------CC---TGATATGAAC-TGAAAATAGC---GTT-GAACAT-----------T----A--T-----TTTC-ATTGTTAC-------GTACCAA--TAT--CGCTAATTGCTATTTCGAAAACGTTAATTAAAAAAA----TT--TAATGAGAGAAACTAT-
gi|13 : tcaccgcttgtcatctttcttcgtatctaatttattCC---TGAGCTGAACATT----CAGTTATTTT-GTATGTA-----G-T-GTAATGT--TG----TT---GTTTTCATTGTG-ATGTACATG--TAT--TCCTACGCGCTATGTAAAAAA
gi|9 : ttaatttagcacagacgttacaatattacaactccaTG--TAT--TCCTACGCACCATTTCAAAAACTTAAATTAATTGTT----TT--TGATGAGAGAAACTAT-TTGTTTTACTATCT-A-AAACAT------AATAAACGGATA-AGAAATAAATCTTTT---------TCTTTTTTTGATGGCGGAATAAAACTTC------------AATTGGAAACTCGGGCGGGAAAA-CGC--GT-----AGTGC----------AT--TA-ATG---AAGT-T--TT--CGGTACA-ATTTTCAGC--TT-GATGTGGC--C--ATC--AAATAAAGAATAATT
gi|25 : tgACGTTAATTAAAGCTT----TT--CGAGGAGAAAAACTAT-TTGATTTACTATTT-GAAAACAT------TATCaatttcttaaatcacgggtaaa
gi|4 : ATTAAAGCTT----GT--CGATGAGTCAACCAAT-TTGTATCACTATAT-GGAAACAT------GAAAAGATCATA-CTAA----------T---------TATC---------------------TT-------------GATGGGAAAATTGGAT-GGAAAA---T--GCGTA-----GCG-C-------AT--TG-ATG---AAGT-T--TTT-CG--TCTGATTTTTCCCT-AA-GACACGGC--G--TCC--AAG-AAAAGA
gi|16 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctcttacttcatttaaccagctttaatttggcgcccaatccatttaaaatttgctcattaagtctttctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatTC------------CAAGAGAAATTTGGAA-GAAACA-CTT--TTTCATCA---------------T--TG-ATG---AAGT-T--TTC-CA--TCC-AATTTCCCC--TT-GATACCGC--C--ATC--AAG-AAAAGActtacacgattcacttcttgggtaaagaaat
gi|16 : aataaatcttaaaattcttaatggcggtaTC------------AAGGGGA-AATTGGAT-GGAAAA-C-----TTCATCAATG-----------A---TG-AAA---AAGT-G--TTT-CT--TCC-AAATTTCTCT-TG-GATACCGC--C--ATT--AAG-AAa
gi|14 : aataaatcttaaaaTT------------AAAGGGAACATTGGGT-GGCAAATCTT--TTTCGTCAACTCG-C-------AT--TG-ATG---AAGT-T--TTC-CA--TCC-AATTTTGACT-TT-GATTCGGC--C--ATC--AAG-Ataccgccatcaagaaaagaa
gi|14 : gaaataaatcttgcaattccattcgggaTC------------AAAGTCAAAATTGGAT-GGAAAA-C-----TTCATCAATGCG-A-------GT--TG-ACGAAAAAGA-T--TTGCCA--CCC-AATGTTCCCT-TT-AAT
gi|15 : gaaataaatcttgcaattccattcgggTC------------AAAGGGAAAATTGGAC-GGAAAA-TT--------TCAACGCG-C-------TT--TG-ACGAAAAAGT-T--TT-----------------CCG-TT-CA-GC-GC--C--ATA--AAG-AAAAAAGAATttcggccatcaaga
gi|19 : tgaatcttgtaattctttttttgatggctataTC------------AAAGGGAAAACTGGAC-AGAAAA-CTTCATGCTGT-A--GCG-C-------AT--TG-ATG---AAgata
gi|17 : caatcttacaattcttttaatgaccataTC------------AAAGGGAAAATTGGAC-CGAAAA-CTT--TTTGATcaag
gi|24 : aatcttataattctttttttgacggagaaaaactaaacagaaaatttaaacTC------------AAATGGAAAATTGGAC-GGAAAA-CTT--TTTtaccaccatcaagaaaagaatt
gi|4 : attttcaacatagcgcAGGGAAAAATCAGAC-GAAAAA-C-----TTCATCAATGCG----------C--TA-CGC---A--T-T--TTC-CA--TCCAATTTTCCCcaccaccatcaaga
gi|15 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctcttacttcatttaaccagctttaatttggcgcccaatccatttaaaatttgctcattaagtctttctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatTGAAC-GGAAAA-CTT--TTTCGTCAAAGCG-C-------GT--TG-A------AAT-T--TTC-CG--TCC-AATTTTCCCT-TT-GATATAGC--C--ATC--A---AAAAAAGAATTaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|19 : tgaatcttgt-CTT--GTTCATCAATGCGCT-------AC--AGCATG---AAGT-T--TTC-TG--TCC-AGTTTTCCCT-TT-GATATGGT--C--ATT--AAA-AGAAgcgccataaagaaaaaagaatgata
gi|7 : caatcttacaaCG-T-------ATCATG-AA----AAGT-T--TT--CG--TCCAATTTTCTCCT-TA-GATCCG----C--ATT--AGG-AA
gi|22 : catttagtccctcttctcttctccgacaatccatcctaaccattcacctcaattgtcgtccactcattattctggcccaataactctcctgacctgaacgcacagacattgatgtggttgggttagtatgcaaataatgatcctaaagccataaaaataattcaagttttgatgactgaaaacatcttgattactattcaataaacataattaaataaaaaaatcaaatcgactcgT--TG-ATG---AAGTAT--TTC-CG--TCC-ATTTTCCCCATTT-GAAA--GCAAT--ATC--AAG-AAAAGAttttcgccaaaggtccttgctactgccaaatctaaagaaaaacacatctta
gi|17 : tttcttttct---AAGT-T--TTC-GG--TCC-AATTTTCCCT-TT-GATACCAC--C--ATC--AAG-AAAAGAag
gi|24 : aatcttataattctttttttgacggagaaaaactaaacagaaaatttaaacatcaaa---AAGT-T--TTC-CG--TCC-AATTTTCCAT-TT-GACACCAC--C--ATC--AAG-Aatt
gi|26 : attttcaacatagcgcaaa---AGGT-TGATTC-CG--TCT-AATTTCCC---TTAGATACCAC--C--ATC--AAG-AAAA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ATAAACCCACTGCACTCATTGCACATCGACTTAAGTATAATATATAATCATAAAAATACCAGCACTCATTGTTGATAGCAAAACAGTTCATGAGAATAACATCTTACTTTATTTGACATCGAACAGAGAAGTAAA
Unaligned ( gi|21 ): TAAAGGTTTTACATCACAATTTTTTCTTTGATACCGCGATCAAAAAGAGAATTATAAGATTCATTTC
Unaligned ( gi|27 ): GCATTGCTGAAACTTTCCGTCCAATCTTGTCTTTGACATCAAGAAA
Unaligned ( gi|28 ): AAAACTGTTTTCTTATGCCTCAGGCTTAAGTTTTGTGAT
Unaligned ( gi|29 ): TGTTTGATCATGTAATACAGGGTCAAAATGGCACAG
Unaligned ( gi|30 ): ATTTTTTTTTTAATTATTAAAAAATTGATTAATA
Alignments
lowQualScore : 11 111 11111111 1111111 333333333333 6666666666666666666666666666666 2222 33333333333333333333 22222 111 111111 1 333333333333333333333 44444444444444444444444444444444 111 3333333333 333333 111111 111 66666666666666666666666666666666666666666 111111111 1111111 111111111 222222222222
lowQualScore : 11 222 4 66666666 3 0 4 4 4 4 5 4 4 4 2222222 111111111111 0 1 0 3 777 0 2222222222222222222222222222222 1 5555 0 1 66666666666666666666 1 11111 2 1 1 0 1 777 000 2 1 000000 5 4 1 6 1 0 9999 5 444444444444444444444 4 999 0 1 4 00000000000000000000000000000000 111 3333333333 3 66 2 3 0 5 44 9999 66 5 3 000000 999999 1 0 111 22222222222222222222222222222222222222222 1 66 4 777777777 55 3333333 111111111 1 000000000000 3 3 1 444 2 33 0 2 2 2 2 3 33 33 8
lowQualScore : .. ... . ........ . . . . . . . . . . ....... ............ . . . . ... . ............................... . .... . . .................... . ..... . . . . . ... ... . . ...... . . . . . . .... . ..................... . ... . . . ................................ ... .......... . .. . . . . .. .... .. . . ...... ...... . . ... ......................................... . .. . ......... .. ....... ......... . ............ . . . ... . .. . . . . . . .. .. .
lowQualScore : 00 222 4 11111111 6 5 0 0 0 0 3 4 4 4 6666666 666666666666 9 9 1 6 888 9 0000000000000000000000000000000 0 8888 1 4 11111111111111111111 2 22222 4 0 7 3 7 111 000 0 0 111111 5 6 0 5 4 1 1111 0 333333333333333333333 4 111 1 3 0 11111111111111111111111111111111 111 7777777777 0 99 5 1 2 6 00 4444 11 0 5 555555 222222 0 8 888 77777777777777777777777777777777777777777 6 11 4 888888888 55 0000000 777777777 4 999999999999 3 1 5 444 5 44 4 5 5 1 5 5 44 44 0
consensus : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGC-A-T-CAAAGAAAACCT-----A-CGAGTCGC-TT-CC-CCGTTCCCACGACACAACCAGTGTTCAG---CGTCT--------CC--CAA-CA-----CAAT----GCANCAT-CACATCGAGTCAC--------------------CGCTTGTCCTCTTTCT--TCGTATCTAATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATCT-----AATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTC-A-TAA--CT-C--C--C---T-GACCTGAACGCGCAGCCATTTT-GAATGTA------------GTGT-------T--TG----TTT-CATTGTTAC-------ATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTACTAT-TTA--AAACAT------AATNAAATGATA-A-AAAT--AA---------T-C------TTT----------T-----CGAAG--G-GAA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCAA-GCG-------C-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC-TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
Reference ( family-1177 ) : AAATCATTTAATA--TCCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCNGC-A-T-CAAAGAAAACCT-----A-CGAGTCGC-TT-CCGCCGTTCCCACGACACAACCAGTGTTCAG---CGTCT--------CCT-CGA-CA-----CAAT----GCANCAT-CACATCGAGTCAC--------------------CGCTTGTCCTCTTTCT--TCGTATCTAATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCNTTN-----AGTTCACCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTC-A-TAA--CT-T--C--C---T-GACCTGAACNCGCAGCCATTTT-GAATGTA------------GNGT-------T--TG----TTT-CGTTGTTAC-------ATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTACTAT-TTG--AAACAT------AATNAAATGATA-A-AAAT--AA---------T-C------TTT----------T-----CAAAG--G-GAA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCAATGCG-------C-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTCCCC-TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
gi|1 : AAATCATTTTATAAATCCGTTTTCTTC--G---GACAT--------T-----TATTTC-GTTTGTTCTAAAAA-TGC-ATTT-GA-TTTTGAC-ACT-CAACGAAAACCTTTGAAA-TGAGT-GC-AT-C----GCTCGTAAGATACAACCAATGCTCGG---CATCT--------C-----------------T----ACATCAT-T-CATCGAGGCAG--------------------CGCTTGTTATCTTTCTAATC--ATCTTATTCATCATTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AAC---TCTGTT
gi|1 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaT---TCTAATCATCT-----TATTCATCATTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AACTCTGTTTC-A-TAA-----------T---T-GACTTAAACATACTACCA-TCT-GA--GTA------------GTGTTA-----T--TG----TTT-tcataattgacttaaacatactaccatctgagtagtgttattgttttaagtagttcttaagtagttttagaatgcatatctttgtttaagtggtacctactgtgtgcatatgtattcgtaagcggcattttaaaaaggccaattaaagccttttcataagaaaaagtattt
gi|1 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaaaatcattttataaatccgttttcttcggacatttatttcgtttgttctaaaaatgcatttgattttgacactcaacgaaaacctttgaaatgagtgcatcgctcgtaagatacaaccaatgctcggcatctctacatcattcatcgaggcagcgcttgttatctTTTTAGAATGCAT-----------ATCT-------T--TG----TTT-AAGTGGTACCTACTGTGTGCATATGTAT--TCGTAAGCGGCATTTTAAAAAGGCCAATTAAAGCCT----TT--TCATAAGAAAAAGTAT-TTtaagtagttcttaagtagttttagaatgcatatctttgtttaagtggtacctactgtgtgcatatgtattcgtaagcggcattttaaaaaggccaattaaagccttttcataagaaaaagtattt
gi|10 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaaaatcattttataaatccgttttcttcggacatttatttcgtttgttctaaaaatgcatttgattttgacactcaacgaaaacctttgaaatgagtgcatcgctcgtaagatacaaccaatgctcggcatctctacatcattcatcgaggcagcgcttgttatctttctaatcatcttattcatcatttagatattacgcccttaatttcgcgcccaatccactaactctgtttcataattgacttaaacatactaccatctgagtagtgttattgttttaagtagttcttaagtagTCAC--------------------CGCTTGTCATCTTTCT--TCGTATCTAATTTATTTTTTAACCAATGCACCTTTAATTTGATGTTAAATCCATTT--AAC---TCTAC
gi|10 : CATCT----T---TCTTCGTATCT-----AATTTATTTTTTAACCAATGCACCTTTAATTTGATGTTAAATCCATTT--AACTCTACCTG-A-TA----------------T-GAACTGAAAA--TAGC---GTT-GAA-----------------CAT-------T--AT----TTT-CATTGTTAC---------GTACCAATAT--CGCTAATTGCTATTTCGAAAACGTTAATTAAAAAAA----TT--TAATGAGAGAAACTAT-ctgatatgaactgaaaatagcgttgaacattattttcattgttacgtaccaatatcgctaattgctatttcgaaaacgttaattaaaaaaatttaatgagagaaactat
gi|11 : tcaccgcttgtGTCTT---AAT-AAAAT--------TATAGTGATTAT-AAATAGCAGAAAA---TCAGTTT-GA-TTTCTAC-A-T-TAAAAAAAACCC-----A-CAAGCCGCATT-ACCCCATTCCCACGACACCGCCAGTGTCCAA---TGTCT--------CCTCCAA-CA-----CAAT----GCAACAT-C-CATCGAGGCAC--------------------
gi|13 : TT-A-CAA--CT-C--CACC---T-GAGCTGAACATTCAGTTATTTT-GTATGTA------------GTGTAATGTTGT--TG----TTTTCATTGTGA---------TGTACATGTAT--TCCTACGCGCTATGTAAAAAA
gi|14 : ttaatttagcacagacgttacaata----------T-----TAAAG--G-GAA---------CATTGG--GT-------GGCAAATCTTTTTCGTCAACTCG-------C-ATTG-ATG---AAGT-T--TTCCATC-CAA-TTTTGAC-TTTGATTCGGCC--ATC--AAGA
gi|15 : gaaataaatcttgcaattccattcgggaTGA--AC-------GGAAAA-CTTTTTCGTCAAAGCG-------C-GTTG-A------AAT-T--TTCCGTC-CAA-TTTTCCC-TTTGATATAGCC--ATC--AAAAAAAGA
gi|15 : tgaatcttgtaat----------T-----CAAAG--G-GAA---------AATTGG--AC-------GGAAAA-TT------TCAACGCG-------C-TTTG-ACGAAAAAGT-T--TTCCGTT-CAG-----------------CGCC--ATA--AAGAAAAAAG-AATgcgccataaagaaaaaagaatgata
gi|16 : tgaatcttgtaattctttttttgatggctata----------T-----CCAAG--A-GAA---------ATTTGG--AA-------GAAACA-CTTTTTCATCA---------------TTG-ATG---AAGT-T--TTCCATC-CAA-TTTCCCC--TTGATACCGCC--ATC--AAGAAAAGAgata
gi|17 : aataaatcttaaaattcttaatggcggtaAT--AA---------TTC------TTT----------TTTTGACGGAG--A--AA---------AACTAA--AC-------AGAAAA-TTT-------AA---A-------C-ATCA-A-A---AAGT-T--TTCGGTC-CAA-TTTTCCC-TTTGATACCACC--ATC--AAGAAAAGAa
gi|18 : aatcttCGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTCCGGC-A-T-CAAAGAAAACCT-----G-CGAATCGCTTT-CCCCCGTTCCCACGACACAATCTGTGTTCAG---CGTCT--------att
gi|19 : tt-CTTGTTCATCAATGCG-------CTACAGCATG---AAGT-T--TTCTGTC-CAG-TTTTCCC-TTTGATATGGTC--ATT--AAAAGAA
gi|2 : caatcttacaaTT---GATAGAAAT--------TACGACGATTTC-GATTGACCGAAATA-TTC-GTTT-GA-TTTCTGC-A-T-CAAAGTAAACCT-----G-AGAG------T-CCGCTAT--CCAC--C---ACCGGTGTTCAA---CATCT--------CCG-CAG-CACACACCAATCACCGCAGCA--CACACTGAATCACCGCAGCACACACCGAATCACCGCCTGCCCTCTCCCT--AAACATTTAATTCATCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TAT---TCTGCTCAATA-----ACTCTACCT
gi|2 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatCATTT-----AATTCATCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TATTCTG-CTC-AATAA--CT-CTAC--C---T-AGCCTGACCACACGGCCATTTT-GGATGTACATATGTAGCTAGTGT-------TGCTG----TTTTCATTGTTA---------------TGTAT--TCCTACGCGTCATTTCAAAAACGTTGATTAAAGTAT----TT--TGATGTGGGAAACTAT-TTGTTTTACTAT-T----AAGTATTTAAAAAATTAAATGATATA-AAATG-AA---------T-C------TTA----------T-----CATTG--G-AAA---------AATTGG--AC-------GGAAAA-TCTTCTCATCAATGCATCACGCTC-ATTG-ATA---CAGT-T--TT---------------CC-TTTGACACAGCC--ATC--AACAAA--AG-AATTCagcctgaccacacggccattttggatgtacatatgtagctagtgttgctgttttcattgttatgtattcctacgcgtcatttcaaaaacgttgattaaagtattttgatgtgggaaactatttgttttactattaagtatttaaaaaattaaatgatataaaatgaatcttatcattggaaaaattggacggaaaatcttctcatcaatgcatcacgctcattgatacagttttcctttgacacagccatcaacaaaagaattc
gi|20 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatttgatagaaattacgacgatttcgattgaccgaaatattcgtttgatttctgcatcaaagtaaacctgagagtccgctatccaccaccggtgttcaacatctccgcagcacacaccaatcaccgcagcacacactgaatcaccgcagcacacaccgaatcaccgcctgccctctccctaaaATCATTTAATA--TTCATAGTCTTTAAAAT-GTAAT--------TACAGCAATTTTTGATGGGCAGCAAAA-TTC-GTTT-GA-TT
gi|21 : ---AGGT-T--TTACATCACAA-TTTTTTC-TTTGATACCGCG--ATC--A--AAAAGAG-AATTa
gi|22 : taaTTG-ATG---AAGTAT--TTCCGTC-CAT-TTTCCCCATTTGAAAGCAAT--ATC--AAGAAAAGAataagattcatttc
gi|23 : tttcttttctAAATCATTTAATT--TTCATTGTCTT---GAT-GAAATTACAGCAGTACGACGATTTT-GATTGGCCAAAAag
gi|24 : ---AAGT-T--TTCCGTC-CAA-TTTTCCA-TTTGACACCACC--ATC--AAGAg
gi|25 : attttcaacatagcgcaaaACGTTAATTAAAGCTT----TT--CGAGGAGAAAAACTAT-TTGATTTACTAT-TTGA-AAACAT------TAT
gi|26 : ---AGGT-TGATTCCGTC-TAA-TTTCCC--TTAGATACCACC--ATC--AAGAAAAGc
gi|27 : cG-------C-ATTG-CTG---AAAC-T--TTCCGTC-CAA-TCTTGTC-TTTGA------C--ATC--AAGAAAcatt
gi|3 : AAATCATTTAATA--TTTATTGTCTT---GAT-GAAAT--------TACAGCGATTTT-GATTGGCTGAAAAA-TTC-GTTT-GA-TTTTTGC-A-T-TAACGAAAACCT-----A-CGAGTCGC-TTTCCACTATTCCCACGACACAACCAGTGTTCAA---TATCT--------CCT-CAAACA-----CAAT----GCAACATACACATCGAGTCAT--------------------CGCTTGTCTTCTCCCT--TCATATCTGATTCACATTTTAACCATTACACCTTTAATATGGTGTCCAATCCATTT--AAT---TCTGCTCCTTC-----NGTTCACATTTTAACCATTACACCTTTAATTTGGTGTCCAATCCATTT--AATTCTG-CTC--------CT-T--C--C---T-GACCTGAACGTGCAGCCATTTT-GAATGTA------------GAGT-------T--TG----TTT-CATTTTTAC-------ATGTACATATAT--TCCTACGCGTGATGTCAAAAACGTTAATTAAAGCTT----TT--TCATGAGAGAAACTAT-TTGTTTTGCTAT-TTAC-AAACAT------AATCAGATGATA-A-GAAT-------------T-C------TTT----------T-----CAAAG--G-GAG---------AATTGG--GC-------GAAAAA-CTTTTTTATCAATGCG-------T-ATTG-AGG---AAGT-T--TTGCGCC-CAT-TTTCCCC-GTTGATACGGCC--ATC--AAGAAAAAAT-AATTC
gi|4 : TATCTT---CAT-TAAAT--------TACGGCGATTTA-TATTG-CCGAAAAG-ACC-GTTT-GA-TTTCGGC-A-T-CAAGGAAATCAT-----A-TTAGTCGC-TTTCCACCGTTCCTATGACACAACCAGTGGCCAA---TGTCT--------CC---------------------GCAGCAT--ACATGGAGTCAC---------------------GC--GTCCTCTTACT--TCAT--------------TTAACCAG-----CTTTAATTTGGCGCCCAATCCATTTAAAAT---T-TGCTCATTA-----AGT---CTTTCTATCC
gi|4 : CTCTT-----ACTTCA---TTTAACCAG-----CTTTAATTTGGCGCCCAATCCATTTAAAATT-TG-CTC-ATTAAGTCT-T--T--C---T-ATCCTGAACTCGCGGCCACTTT-Gtgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|4 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcATTAAAGCTT----GT--CGATGAGTCAACCAAT-TTGTATCACTATATGG--AAACAT------GAAAAGATCATA-C-TAAT--TA---------T-C------TT------------------GATG--G-GAA---------AATTGG--AT-------GGAAAA-----TGCGT--A-GCG-------C-ATTG-ATG---AAGT-T--TTTCGTC-TGATTTTTCCC-TAAGACACGGCG--TCC--AAGAAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|5 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctcttacttcatttaaccagctttaatttggcgcccaatccatttaaaatttgctcattaagtctttctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatTTTT-GCTTGTCCTAAACA-GTC-GTTT-GATTTTTGGC-A-T-CGAACAAGAGCT-----C-CGA--------------GTTCCTACGACAATAC-------CAA---CGTCT--------CCA-CAA-CT-----TAAA----GTGATA------------CAC--------------------TGCTTGTCCTGTTAGT-----TATCTTATTTATCTTATActtacacgattcacttcttgggtaaagaaat
gi|6 : tttgccttaatttgatagaaatctagtgtcaaaccattttttgtgaagtgtattttaataaaacccagctagactactttgttgacatcggtttaagttactgcaatgtcataatgaatacccagtcattccatattggttgcaaaattgttcatgagaaatatattttactgtatcaaataccgaagatgtaaagataaataaattgtaagatgcacatcaatctgtatgctgacaacaagacctatattataaattattTTAATA--TCTATTGTCTT---GAC-GAAAT--------TACAGCGAATTT-GAATGGCCAACAAA-TTC-GTTTAGA-TTTC-GCAA-TACAAGTAAAACCT-----ATCGAGTCGC-TT-CCACCATTCCCGCGACACAGCCA-----CAG---CTT----------------A-CA-----C--C----GAATCAC-CGC------TCAG--------------------CGCTGGTTCTCTTTCT--TCTTATCTAATTCTTCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GAT---TCTGCCCAATA-----ACTTCg
gi|6 : tcactataacgtcacatcatttaatatttattatgttaaT---TCTTCTTATCT-----AATTCTTCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GATTCTG-CCC-AATAA--CT-T--C--TAAGT-GACCTGATCTCACAGCCATTTT-GAATGAA------------GTGT-------T--GT----TTT-TATTGTTAC-------A-ATAAATGTAT--TCCTACGCGCCATTTTAAAAA----AAAAACAACTTGAGATTAATGATGAGAGAAACTtaagtgacctgatctcacagccattttgaatgaagtgttgtttttattgttacaataaatgtattcctacgcgccattttaaaaaaaaaacaacttgagattaatgatgagagaaact
gi|7 : tcactataacgtcacatcatttaatatttattatgttaattaatatctattgtcttgacgaaattacagcgaatttgaatggccaacaaattcgtttagatttcgcaatacaagtaaaacctatcgagtcgcttccaccattcccgcgacacagccacagcttacaccgaatcaccgctcagcgctggttctctCATTT--AGTCCCTCTTCTCTTCTCCGACAATCCATCCT--AACCATT-CACCTC-AATT-GTCGTCCACTC-ATT----ATTCTGGCCC-AATAA--CTCT--C--C---T-GACCTGAACGCACAGACATT----GATGT--------------GGT-------T--GG----GTT-AGT-------------ATGCAAATA-ATGATCCTA-AAGCCAT---AAAAA---TAATTCAAG--T----TT--TGATGACTGAAAACATCTTG-ATTACTAT-TCAATAAACAT------AATTAAATAA-A-A-AAATCAAA---------T-CGACTCGTTCCTAATGCGGAT-----CTAAG--GAGAA---------AATTGG--AC--------GAAAA-CTTT----TCA----------------TG-AT----ACGT-T--TT-CGCC-AAA-GGTCC----TTGCTACTGCCAAATCTAAAGAAAA
gi|8 : ---GAT-TAAAT--------AATGGCGATTTT-GATTGGCCGAAAAAATTC-GTTT-GA-TTTCTAC-A-T-GAAAGAAAACCT-----A-CGA-------------TGTTC-----AC-TAACTAGTGATCAGATTCCTCTAACCCCACCCC-CCT-CA-----CAAT----GCACCA--CACATCGAGTCTC--------------------CGCTTGTCCTCTTTTT----GTATCTAATTCATCTTCCAACCATTGCACCTTTAATTTTGCAT----TCTGCTC--AATA--TCTCCTCacacatctta
gi|8 : TCT-----AATTCATCTTCCAACCATTGCACCTTTAATTTTGC----------------ATTCTG-CTCAA-TAT--CT-C--CT-C---TAGACCTGAACAAACAGCGACTTG-GAATGTA--------------GT-------T--TGTCGTTTT-CATTGTTAC-------tagacctgaacaaacagcgacttggaatgtagtttgtcgttttcattgttact
gi|9 : gattaaataatggcgattttgattggccgaaaaaattcgtttgatttctacatgaaagaaaacctacgatgttcactaactagtgatcagattcctctaaccccacccccctcacaatgcaccacacatcgagtctccgcttgtcctctttttgtaTGTAT--TCCTACGCACCATTTCAAAAACTTAAATTAATTGTT----TT--TGATGAGAGAAACTAT-TTGTTTTACTAT-CTA--AAACAT------AATAAACGGATA-AGAAAT--AAATCTTTTTCT-T------TTT----------T-----TGATGGCG-GAATAAAACTTCAATTGGAAACTCGGGCGGGAAAA-C----GCGT-A--GTG-------C-ATTA-ATG---AAGT-T--TTCGGTA-CAA-TTTTCAG-CTTGATGTGGCC--ATC--AAATAAAGAATAATTt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAAACCCACTGCACTCATTGCACATCGACTTAAGTATAATATATAATCATAAAAATACCAGCACTCATTGTTGATAGCAAAACAGTTCATGAGAATAACATCTTACTTTATTTGACATCGAACAGAGAAGTAAA
Unaligned ( gi|28 ): AAAACTGTTTTCTTATGCCTCAGGCTTAAGTTTTGTGAT
Unaligned ( gi|29 ): TGTTTGATCATGTAATACAGGGTCAAAATGGCACAG
Unaligned ( gi|30 ): ATTTTTTTTTTAATTATTAAAAAATTGATTAATA
Alignments
lowQualScore : 11 111 11111111 1111111 3333333333333333 1111111 6666666666666666666666666666666 2222 22222 111 11111 1 33333333333333333333 44444444444444444444444444444444 33333333333 2222222 1111 111 66666666666666666666666666666666666666666 111111111 1111111 222222222222
lowQualScore : 11 222 4 66666666 3 0 4 4 4 4 1 4 4 2222222 6666 7777777777777777 777 4444444 4 1 999 777 1111111111111111111111111111111 1 5555 0 0 2 88888 4 333 1 1 999 111 1 4 00000 0 1 6 1 0 9999 5 33333333333333333333 4 999 0 1 4 44444444444444444444444444444444 8 77777777777 3 66 3 0 5 44 9999 66 5 3 1111111 6 6666 1 0 111 66666666666666666666666666666666666666666 2 66 4 777777777 55 3333333 777777777 0 888888888888 3 2 77777 2 33 0 2 22 33 3 33 33 8
lowQualScore : .. ... . ........ . . . . . . . . . ....... .... ................ ... ....... . . ... ... ............................... . .... . . . ..... . ... . . ... ... . . ..... . . . . . .... . .................... . ... . . . ................................ . ........... . .. . . . .. .... .. . . ....... . .... . . ... ......................................... . .. . ......... .. ....... ......... . ............ . . ..... . .. . . .. .. . .. .. .
lowQualScore : 00 222 4 11111111 6 5 0 0 0 0 1 4 4 6666666 4444 6666666666666666 888 4444444 4 9 777 888 7777777777777777777777777777777 0 8888 1 1 7 44444 0 888 8 0 111 000 6 0 00000 1 0 5 4 1 1111 0 99999999999999999999 4 888 1 3 0 88888888888888888888888888888888 9 66666666666 0 99 1 2 6 00 4444 11 0 5 7777777 7 0000 0 8 888 99999999999999999999999999999999999999999 2 11 4 888888888 55 0000000 555555555 4 888888888888 1 9 44444 5 44 4 5 88 44 5 44 44 0
consensus : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCT-----A-CGAGTC-GC-T-T--C-C----C--CG---TTC-------CCACGACACA-ACCAGTG-TCAG---CGTCT---C--C-C--AAC------AC--AAT----GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTNCT--TCATATCTNATTCATCTTTTAACCATTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTC-A-TAA--CTC--C--C---T-GACCTGAACGCGCAGCCATTTT-GAATGTA------------GTGT-------T--TG----TTT-CATTGTTA-C-------ATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A--AAACATAATNAAATGATA-A-AAAT--AA---------T-C------TTT----------T-----CGAAG--G-GAA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
Reference ( family-1177 ) : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCT-----A-CGAGTC-GC-T-T--C-C----C--CG---TTC-------CCACGACACA-ACCAGTGTTCAG---CGTCT---C--C-C--AAC------AC--AAT----GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTTCT--TCGTATCTAATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTC-A-TAA--CTC--C--C---T-GACCTGAACGCGCAGCCATTTT-GAATGTA------------GTGT-------T--TG----TTT-CATTGTTA-C-------ATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A--AAACATAATNAAATGATA-A-AAAT--AA---------T-C------TTT----------T-----CGAAG--G-GAA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
gi|1 : AAATCATTTTATAAATCCGTTTTCTTC--G---GACAT--------T-----TATTTC-GTTTGTTCTAAAAA-TGC-ATTT-GA-TTTTGACACT-CAACGAAAACCTTTGAAA-TGAGT--GC-A-T--CGC----T--CG---T-----------AAGATACA-ACCAATGCTCGG---CATCT---C----------------------T----ACATCAT-T-CATCGAGGCAGCGCTTGTTATCTTTCTAATC--ATCTTATTCATCATTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AAC---TCTGTT--TCAT-----AATT
gi|1 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaT---TCTAATCATC-T-----TATTCATCATTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AACTCTGTTTC-A-TAA----------T---T-GACTTAAACATACTACCA-TCT-GA--GTA------------GTGTTA-----T--TG----TTT-TAgacttaaacatactaccatctgagtagtgttattgttttaagtagttcttaagtagttttagaatgcatatctttgtttaagtggtacctactgtgtgcatatgtattcgtaagcggcattttaaaaaggccaattaaagccttttcataagaaaaagtattt
gi|1 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaaaatcattttataaatccgttttcttcggacatttatttcgtttgttctaaaaatgcatttgattttgacactcaacgaaaacctttgaaatgagtgcatcgctcgtaagatacaaccaatgctcggcatctctacatcattcatcgaggcagcgcttgttatctTTTTAGAATGCAT-----------ATCT-------T--TG----TTT-AAGTGGTA-CCTACTGTGTGCATATGTAT--TCGTAAGCGGCATTTTAAAAAGGCCAATTAAAGCCT----TT--TCATAAGAAAAAGTAT-TTagtagttcttaagtagttttagaatgcatatctttgtttaagtggtacctactgtgtgcatatgtattcgtaagcggcattttaaaaaggccaattaaagccttttcataagaaaaagtattt
gi|10 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaaaatcattttataaatccgttttcttcggacatttatttcgtttgttctaaaaatgcatttgattttgacactcaacgaaaacctttgaaatgagtgcatcgctcgtaagatacaaccaatgctcggcatctctacatcattcatcgaggcagcgcttgttatctttctaatcatcttattcatcatttagatattacgcccttaatttcgcgcccaatccactaactctgtttcataattgacttaaacatactaccatctgagtagtgttattgttttaagtagttcttaagtagCATCT----T---TCTTCGTATC-T-----AATTTATTTTTTAACCAATGCACCTTTAATTTGATGTTAAATCCATTT--AACTCTACCTG-A-TA---------------T-GAACTGAA--AATAGC---GTT-GAACAT--------------TAT----------------TTT-CATTGTTA-C---------GTACCAATAT--CGCTAATTGCTATTTCGAAAACGTTAATTAAAAAAA----TT--TAATGAGAGAAACTAT-
gi|11 : tcaccgcttgtGTCTT---AAT-AAAAT--------TATAGTGATTAT-AAATAGCAGAAAA---TCAGTTT-GA-TTTCTACA-T-TAAAAAAAACCC-----A-CAAGCC-GCAT-TA-C-C----C--CA---TTC-------CCACGACACC-GCCAGTGTCCAA---TGTCT---CCTC-C--AAC------AC--AAT----GCAACAT-C-CATCGAGGCAC
gi|13 : TT-A-CAA--CTC--CACC---T-GAGCTGAACATTCAGTTATTTT-GTATGTA------------GTGTAATGTTGT--TG----TTTTCATTGTGA----------TGTACATGTAT--TCCTACGCGCTATGTAAAAAA
gi|14 : ttaatttagcacagacgttacaataAAG--G-GAA---------CATTGG--GT-------GGCAAATCTTTTTCGTCA-A--------CTCGC-ATTG-ATG---AAGT-T--TTCCATC-CAA-TTTTGAC--TTTGATTCGGCC--ATC--AAGA
gi|15 : gaaataaatcttgcaattccattcgggattaTGA--AC-------GGAAAA-CTTTTTCGTCA-AA-------G-CGC-GTTG-A------AAT-T--TTCCGTC-CAA-TTTTCCC--TTTGATATAGCC--ATC--AAAAAAAGA
gi|15 : tgaatcttgtaat----------T-----CAAAG--G-GAA---------AATTGG--AC-------GGAAAA-TT------TCA-AC-------G-CGC-TTTG-ACGAAAAAGT-T--TTCCGTT-CAG------------------CGCC--ATA--AAGAAAAAAG-AATgcgccataaagaaaaaagaatgata
gi|16 : tgaatcttgtaattctttttttgatggctata----------T-----CCAAG--A-GAA---------ATTTGG--AA-------GAAACA-CTTTTTCATCA-----------------TTG-ATG---AAGT-T--TTCCATC-CAA--TTTCCC--CTTGATACCGCC--ATC--AAGAAAAGAgata
gi|17 : aataaatcttaaaattcttaatggcggtaAT--AA---------TTC------TTT----------TTTTGACGGAG--A--AA---------AACTAA--AC-------AGAAAA-TTT-------A-A--------A-C---ATCA-A-A---AAGT-T--TTCGGTC-CAA-TTTTCCC--TTTGATACCACC--ATC--AAGAAAAGAa
gi|18 : aatcttCGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTCCGGCA-T-CAAAGAAAACCT-----G-CGAATC-GC-T-TTCC-C----C--CG---TTC-------CCACGACACA-ATCTGTGTTCAG---CGTCT---att
gi|19 : tt-CTTGTTCATCA-AT-------G-CGCTACAGCATG---AAGT-T--TTCTGTC-CAG-TTTTCCC--TTTGATATGGTC--ATT--AAAAGAA
gi|2 : caatcttacaaTT---GATAGAAAT--------TACGACGATTTC-GATTGACCGAAATA-TTC-GTTT-GA-TTTCTGCA-T-CAAAGTAAACCT-----G-AGAGTCCGC-TAT--C-CACCAC--CGGTGTTCAACATCTCCGCAGCACACACCAAT---CAC---CGCAG---C--A-C--A-C------ACTGAATCACCGCAGCA--CACACCGAATCACCGCCTGCCCTCTCCCT--AAACATTTAATTCATCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TAT---TCTGCTCA
gi|2 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatCATT-T-----AATTCATCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TATTCTG-CTC-AATAA--CTCTAC--C---T-AGCCTGACCACACGGCCATTTT-GGATGTACATATGTAGCTAGTGT-------TGCTG----TTTTCATTGTTA----------------TGTAT--TCCTACGCGTCATTTCAAAAACGTTGATTAAAGTAT----TT--TGATGTGGGAAACTAT-TTGTTTTACTATTAAGTAT-TT-A--AAA---AATTAAATGATATA-AAATG-AA---------T-C------TTA----------T-----CATTG--G-AAA---------AATTGG--AC-------GGAAAA-TCTTCTCATCA-ATGCATCACG-CTC-ATTG-ATA---CAGT-T--TT---------------CC--TTTGACACAGCC--ATC--AACAAA--AG-AATTCataactctacctagcctgaccacacggccattttggatgtacatatgtagctagtgttgctgttttcattgttatgtattcctacgcgtcatttcaaaaacgttgattaaagtattttgatgtgggaaactatttgttttactattaagtatttaaaaaattaaatgatataaaatgaatcttatcattggaaaaattggacggaaaatcttctcatcaatgcatcacgctcattgatacagttttcctttgacacagccatcaacaaaagaattc
gi|20 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatttgatagaaattacgacgatttcgattgaccgaaatattcgtttgatttctgcatcaaagtaaacctgagagtccgctatccaccaccggtgttcaacatctccgcagcacacaccaatcaccgcagcacacactgaatcaccgcagcacacaccgaatcaccgcctgccctctccctaaaATCATTTAATA--TTCATAGTCTTTAAAAT-GTAAT--------TACAGCAATTTTTGATGGGCAGCAAAA-TTC-GTTT-GA-TT
gi|21 : ---AGGT-T--TTACATCACAA-TTTTTTC--TTTGATACCGCG--ATC--A--AAAAGAG-AATTa
gi|22 : taaTTG-ATG---AAGTAT--TTCCGTC-C-A-TTTTCCCCATTTGAAAGCAAT--ATC--AAGAAAAGAataagattcatttc
gi|23 : tttcttttctAAATCATTTAATT--TTCATTGTCTT---GAT-GAAATTACAGCAGTACGACGATTTT-GATTGGCCAAAAag
gi|24 : TTTTCAACATA--------G-CGC-A----A-A---AAGT-T--TTCCGTC-CAA-TTTTCCA--TTTGACACCACC--ATC--AAGAg
gi|25 : aACGTTAATTAAAGCTT----TT--CGAGGAGAAAAACTAT-TTGATTTAC-------TAT-TTGA--AAACATTAT
gi|26 : ---AGGT-TGATTCCGTC-TAA-TTT-CCC--TTAGATACCACC--ATC--AAGAAAAGc
gi|27 : cGC-ATTG-CTG---AAAC-T--TTCCGTC-CAA-TCTTGTC--TTTGA------C--ATC--AAGAAAcatt
gi|3 : AAATCATTTAATA--TTTATTGTCTT---GAT-GAAAT--------TACAGCGATTTT-GATTGGCTGAAAAA-TTC-GTTT-GA-TTTTTGCA-T-TAACGAAAACCT-----A-CGAGTC-GC-T-T--T-C----CACTA---TTC-------CCACGACACA-ACCAGTGTTCAA---TATCT---C--C-TCAAAC------AC--AAT----GCAACATACACATCGAGTCATCGCTTGTCTTCTCCCT--TCATATCTGATTCACATTTTAACCATTACACCTTTAATATGGTGTCCAATCCATTT--AAT---TCTGCTCCTT-C-----NGTTCACATTTTAACCATTACACCTTTAATTTGGTGTCCAATCCATTT--AATTCTG-CTC--------CTT--C--C---T-GACCTGAACGTGCAGCCATTTT-GAATGTA------------GAGT-------T--TG----TTT-CATTTTTA-C-------ATGTACATATAT--TCCTACGCGTGATGTCAAAAACGTTAATTAAAGCTT----TT--TCATGAGAGAAACTAT-TTGTTTTGC-------TAT-TT-AC-AAACATAATCAGATGATA-A-GAAT-------------T-C------TTT----------T-----CAAAG--G-GAG---------AATTGG--GC-------GAAAAA-CTTTTTTATCA-AT-------G-CGT-ATTG-AGG---AAGT-T--TTGCGCC-CAT-TTTCCCC--GTTGATACGGCC--ATC--AAGAAAAAAT-AATTC
gi|4 : TATCTT---CAT-TAAAT--------TACGGCGATTTA-TATTG-CCGAAAAG-ACC-GTTT-GA-TTTCGGCA-T-CAAGGAAATCAT-----A-TTAGTC-GC-T-T--T-C----CACCG---TTC-------CTATGACACA-ACCAGTGGCCAA---TGTCT---C--C------------------------GCAGCAT--ACATGGAGTCAC-GC--GTCCTCTTACT--TCAT--------------TTAACCAG-----CTTTAATTTGGCGCCCAATCCATTTAAAAT---T-TGCTCAT--T-----AA---GTCTTT
gi|4 : -T-----ACTTCAT---TTAACCAG-----CTTTAATTTGGCGCCCAATCCATTTAAAATT-TG-CTC-ATTAAGTCTT--T--C---T-ATCCTGAACTCGCGGCCACTTT-Gctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|4 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctctATTAAAGCTT----GT--CGATGAGTCAACCAAT-TTGTATCAC-------TATATG-G--AAACATGAAAAGATCATA-C-TAAT--TA---------T-C------TT------------------GATG--G-GAA---------AATTGG--AT-------GGAAAA-----TGCGT---A--------G-CGC-ATTG-ATG---AAGT-T--TTTCGTC-TGATTTTTCCC--TAAGACACGGCG--TCC--AAGAAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|5 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctcttacttcatttaaccagctttaatttggcgcccaatccatttaaaatttgctcattaagtctttctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatTTTT-GCTTGTCCTAAACA-GTC-GTTT-GATTTTTGGCA-T-CGAACAAGAGCT-----C-CGA-----------------------G---TTC-------CTACGACAAT-AC-------CAA---CGTCT---C--CAC--AAC------TT--AAA----GTGATA------------CACTGCTTGTCCTGTTAGT-----TATCTTATTTATCTTATActtacacgattcacttcttgggtaaagaaat
gi|6 : tttgccttaatttgatagaaatctagtgtcaaaccattttttgtgaagtgtattttaataaaacccagctagactactttgttgacatcggtttaagttactgcaatgtcataatgaatacccagtcattccatattggttgcaaaattgttcatgagaaatatattttactgtatcaaataccgaagatgtaaagataaataaattgtaagatgcacatcaatctgtatgctgacaacaagacctatattataaattattTTAATA--TCTATTGTCTT---GAC-GAAAT--------TACAGCGAATTT-GAATGGCCAACAAA-TTC-GTTTAGA-TTTCGCAA-TACAAGTAAAACCT-----ATCGAGTC-GC-T-T--C-CA---C--CA---TTC-------CCGCGACACA-GCCA-----CAG---CTT--------------AC------AC----C----GAATCAC-CGC------TCAGCGCTGGTTCTCTTTCT--TCTTATCTAATTCTTCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GAT---TCTGCCCAg
gi|6 : tcactataacgtcacatcatttaatatttattatgttaaT---TCTTCTTATC-T-----AATTCTTCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GATTCTG-CCC-AATAA--CTT--C--TAAGT-GACCTGATCTCACAGCCATTTT-GAATGAA------------GTGT-------T--GT----TTT-TATTGTTA-C-------A-ATAAATGTAT--TCCTACGCGCCATTTTAAAAA----AAAAACAACTTGAGATTAATGATGAGAGAAACTataacttctaagtgacctgatctcacagccattttgaatgaagtgttgtttttattgttacaataaatgtattcctacgcgccattttaaaaaaaaaacaacttgagattaatgatgagagaaact
gi|7 : tcactataacgtcacatcatttaatatttattatgttaattaatatctattgtcttgacgaaattacagcgaatttgaatggccaacaaattcgtttagatttcgcaatacaagtaaaacctatcgagtcgcttccaccattcccgcgacacagccacagcttacaccgaatcaccgctcagcgctggttctctCATTT--AGTCCCTCTTCTCTTC-TCCGACAATCCATCCT--AACCATT-CACCTC-AATT-GTCGTCCACTC-ATT----ATTCTGGCCC-AATAA--CTCT-C--C---T-GACCTGAACGCACAGACATT----GATGTG------------GT------------TG----G-------GTTAGT-------ATGCAAATA-ATGATCCTAAA-GCCAT---AAAAA---TAATTCAAG--T----TT--TGATGACTGAAAACATCTTG-ATTAC-------TAT-TC-AATAAACATAATTAAATAA-A-A-AAATCAAA---------T-CGACTCGTTCCTAATGCGGAT-----CTAAG--GAGAA---------AATTGG--AC--------GAAAA-CTTT----TCA------------------TG-AT----ACGT-T--TT-CG-C-CAA-AGGTCC----TTGCTACTGCCAAATCTAAAGAAAA
gi|8 : ---GAT-TAAAT--------AATGGCGATTTT-GATTGGCCGAAAAAATTC-GTTT-GA-TTTCTACA-T-GAAAGAAAACCT-----A-CGA----------------------TG---TTC------------AC-TA-ACTAGTGATCAGATTCCTCTAACC--C-C--ACCCCCCTCAC--AAT----GCACCA--CACATCGAGTCTCCGCTTGTCCTCTTTTT----GTATCTAATTCATCTTCCAACCATTGCACCTTTAATTTTGCAT----TCTGCTC--AATA--TCTCCTCacacatctta
gi|8 : ATC-T-----AATTCATCTTCCAACCATTGCACCTTTAATTTTGC----------------ATTCTG-CTCAA-TAT--CTC--CT-C---TAGACCTGAACAAACAGCGACTTG-GAATGTA--------------GT-------T--TGTCGTTTT-CATTGTTA-C-------tagacctgaacaaacagcgacttggaatgtagtttgtcgttttcattgttact
gi|9 : gattaaataatggcgattttgattggccgaaaaaattcgtttgatttctacatgaaagaaaacctacgatgttcactaactagtgatcagattcctctaaccccacccccctcacaatgcaccacacatcgagtctccgcttgtcctctttttgtTGTAT--TCCTACGCACCATTTCAAAAACTTAAATTAATTGTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-CT-A--AAACATAATAAACGGATA-AGAAAT--AAATCTTTTTCT-T------TTT----------T-----TGATGGCG-GAATAAAACTTCAATTGGAAACTCGGGCGGGAAAA-C----GCGT---A--------G-TGC-ATTA-ATG---AAGT-T--TTCGGTA-CAA-TTTTCAG--CTTGATGTGGCC--ATC--AAATAAAGAATAATTt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAAACCCACTGCACTCATTGCACATCGACTTAAGTATAATATATAATCATAAAAATACCAGCACTCATTGTTGATAGCAAAACAGTTCATGAGAATAACATCTTACTTTATTTGACATCGAACAGAGAAGTAAA
Unaligned ( gi|28 ): AAAACTGTTTTCTTATGCCTCAGGCTTAAGTTTTGTGAT
Unaligned ( gi|29 ): TGTTTGATCATGTAATACAGGGTCAAAATGGCACAG
Unaligned ( gi|30 ): ATTTTTTTTTTAATTATTAAAAAATTGATTAATA
Alignments
lowQualScore : 11 111 11111111 1111111 3333333333333333 1111111 22222 6666666666666666666666666666666 2222 1111111 111 11111 1 33333333333333333333 44444444444444444444444444444444 33333333333 2222222 111 66666666666666666666666666666666666666666 111111111 1111111 222222222222
lowQualScore : 11 222 4 66666666 3 0 4 4 4 4 1 4 4 2222222 6666 7777777777777777 777 4444444 4 0 66666 777 1111111111111111111111111111111 1 5555 0 4 0 6 0000000 3 5 1 1 999 111 1 4 00000 0 1 6 1 0 9999 5 33333333333333333333 4 999 0 1 4 44444444444444444444444444444444 8 77777777777 3 66 3 0 5 44 9999 66 5 1 1111111 6 666 99 1 0 111 66666666666666666666666666666666666666666 2 66 4 777777777 55 3333333 777777777 0 888888888888 3 2 77777 2 33 0 2 22 33 3 33 33 8
lowQualScore : .. ... . ........ . . . . . . . . . ....... .... ................ ... ....... . . ..... ... ............................... . .... . . . . ....... . . . . ... ... . . ..... . . . . . .... . .................... . ... . . . ................................ . ........... . .. . . . .. .... .. . . ....... . ... .. . . ... ......................................... . .. . ......... .. ....... ......... . ............ . . ..... . .. . . .. .. . .. .. .
lowQualScore : 00 222 4 11111111 6 5 0 0 0 0 1 4 4 6666666 4444 6666666666666666 888 4444444 4 9 44444 888 7777777777777777777777777777777 0 8888 1 5 1 6 9999999 0 7 8 0 111 000 6 0 00000 1 0 5 4 1 1111 0 99999999999999999999 4 888 1 3 0 88888888888888888888888888888888 9 66666666666 0 99 1 2 6 00 4444 11 0 7 7777777 7 888 22 0 8 888 99999999999999999999999999999999999999999 2 11 4 888888888 55 0000000 555555555 4 888888888888 1 9 44444 5 44 4 5 88 44 5 44 44 0
consensus : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCT-----A-CGAGTC-GC-T-T--C-C----C--CG---TTC-------CCACGACACA-ACCAGT-G-T-CAG---CGTCT---C--C-C--AAC------AC--AAT----GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTNCT--TCATATCTNATTCATCTTTTAACCATTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTC-A-TAA--CTC--C--C---T-GACCTGAACGCGCAGCCATTTT-GAATGTA------------GTGT-------T--TG----TTT-CATTGTTA-C-------ATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A-A--AACATAATNAAATGATA-A-AAAT--AA---------T-C------TTT----------T-----CGAAG--G-GAA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
Reference ( family-1177 ) : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCT-----A-CGAGTC-GC-T-T--C-C----C--CG---TTC-------CCACGACACA-ACCAGT-G-T-CAG---CGTCT---C--C-C--AAC------AC--AAT----GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTNCT--TCATATCTNATTCATCTTTTAACCATTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTC-A-TAA--CTC--C--C---T-GACCTGAACGCGCAGCCATTTT-GAATGTA------------GTGT-------T--TG----TTT-CATTGTTA-C-------ATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A-A--AACATAATNAAATGATA-A-AAAT--AA---------T-C------TTT----------T-----CGAAG--G-GAA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
gi|1 : AAATCATTTTATAAATCCGTTTTCTTC--G---GACAT--------T-----TATTTC-GTTTGTTCTAAAAA-TGC-ATTT-GA-TTTTGACACT-CAACGAAAACCTTTGAAA-TGAGT--GC-A-T--CGC----T--CG---T-----------AAGATACA-ACCAAT-GCT-CGG---CATCT---C----------------------T----ACATCAT-T-CATCGAGGCAGCGCTTGTTATCTTTCTAATCAT--CTTATTCATCATTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AAC---TCTGTT--TCAT-----AATT
gi|1 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaT---TCTAATCATC-T-----TATTCATCATTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AACTCTGTTTC-A-TAA----------T---T-GACTTAAACATACTACCA-TCT-GA--GTA------------GTGTTA-----T--TG----TTT-TAgacttaaacatactaccatctgagtagtgttattgttttaagtagttcttaagtagttttagaatgcatatctttgtttaagtggtacctactgtgtgcatatgtattcgtaagcggcattttaaaaaggccaattaaagccttttcataagaaaaagtattt
gi|1 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaaaatcattttataaatccgttttcttcggacatttatttcgtttgttctaaaaatgcatttgattttgacactcaacgaaaacctttgaaatgagtgcatcgctcgtaagatacaaccaatgctcggcatctctacatcattcatcgaggcagcgcttgttatctTTTTAGAATGCAT-----------ATCT-------T--TG----TTT-AAGTGGTA-CCTACTGTGTGCATATGTAT--TCGTAAGCGGCATTTTAAAAAGGCCAATTAAAGCCT----TT--TCATAAGAAAAAGTAT-TTagtagttcttaagtagttttagaatgcatatctttgtttaagtggtacctactgtgtgcatatgtattcgtaagcggcattttaaaaaggccaattaaagccttttcataagaaaaagtattt
gi|10 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaaaatcattttataaatccgttttcttcggacatttatttcgtttgttctaaaaatgcatttgattttgacactcaacgaaaacctttgaaatgagtgcatcgctcgtaagatacaaccaatgctcggcatctctacatcattcatcgaggcagcgcttgttatctttctaatcatcttattcatcatttagatattacgcccttaatttcgcgcccaatccactaactctgtttcataattgacttaaacatactaccatctgagtagtgttattgttttaagtagttcttaagtagCATCT----T---TCTTCGTATC-T-----AATTTATTTTTTAACCAATGCACCTTTAATTTGATGTTAAATCCATTT--AACTCTACCTG-A-TA---------------T-GAACTGAA--AATAGC---GTT-GAACAT--------------TAT----------------TTT-CATTGTTA-C---------GTACCAATAT--CGCTAATTGCTATTTCGAAAACGTTAATTAAAAAAA----TT--TAATGAGAGAAACTAT-
gi|11 : tcaccgcttgtGTCTT---AAT-AAAAT--------TATAGTGATTAT-AAATAGCAGAAAA---TCAGTTT-GA-TTTCTACA-T-TAAAAAAAACCC-----A-CAAGCC-GCAT-TA-C-C----C--CA---TTC-------CCACGACACC-GCCAGT-G-TCCAA---TGTCT---CCTC-C--AAC------AC--AAT----GCAACAT-C-CATCGAGGCAC
gi|13 : TT-A-CAA--CTC--CACC---T-GAGCTGAACATTCAGTTATTTT-GTATGTA------------GTGTAATGTTGT--TG----TTTTCATTGTGA----------TGTACATGTAT--TCCTACGCGCTATGTAAAAAA
gi|14 : ttaatttagcacagacgttacaataAAG--G-GAA---------CATTGG--GT-------GGCAAATCTTTTTCGTCA-A--------CTCGC-ATTG-ATG---AAGT-T--TTCCATC-CAA-TTTTGAC--TTTGATTCGGCC--ATC--AAGA
gi|15 : gaaataaatcttgcaattccattcgggattaTGA--AC-------GGAAAA-CTTTTTCGTCA-AA-------G-CGC-GTTG-A------AAT-T--TTCCGTC-CAA-TTTTCCC--TTTGATATAGCC--ATC--AAAAAAAGA
gi|15 : tgaatcttgtaat----------T-----CAAAG--G-GAA---------AATTGG--AC-------GGAAAA-TT------TCA-AC-------G-CGC-TTTG-ACGAAAAAGT-T--TTCCGTT-CAG------------------CGCC--ATA--AAGAAAAAAG-AATgcgccataaagaaaaaagaatgata
gi|16 : tgaatcttgtaattctttttttgatggctata----------T-----CCAAG--A-GAA---------ATTTGG--AA-------GAAACA-CTTTTTCATCA-----------------TTG-ATG---AAGT-T--TTCCATC-CAA--TTTCCC--CTTGATACCGCC--ATC--AAGAAAAGAgata
gi|17 : aataaatcttaaaattcttaatggcggtaAT--AA---------TTC------TTT----------TTTTGACGGAG--A--AA---------AACTAA--AC-------AGAAAA-TTT-------A-A--------A-C---ATCA-A-A---AAGT-T--TTCGGTC-CAA-TTTTCCC--TTTGATACCACC--ATC--AAGAAAAGAa
gi|18 : aatcttCGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTCCGGCA-T-CAAAGAAAACCT-----G-CGAATC-GC-T-TTCC-C----C--CG---TTC-------CCACGACACA-ATCTGT-GTT-CAG---CGTCT---att
gi|19 : tt-CTTGTTCATCA-AT-------G-CGCTACAGCATG---AAGT-T--TTCTGTC-CAG-TTTTCCC--TTTGATATGGTC--ATT--AAAAGAA
gi|2 : caatcttacaaTT---GATAGAAAT--------TACGACGATTTC-GATTGACCGAAATA-TTC-GTTT-GA-TTTCTGCA-T-CAAAGTAAACCT-----G-AGAGTCCGC-TAT--C-CACCAC--CGGTGTTCAACATCTCCGCAGCACACACCAAT-----CAC---CGCAG---C--A-C--A-C------ACTGAATCACCGCAGCA--CACACCGAATCACCGCCTGCCCTCTCCCT--AAACATTTAATTCATCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TAT---TCTGCTCA
gi|2 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatCATT-T-----AATTCATCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TATTCTG-CTC-AATAA--CTCTAC--C---T-AGCCTGACCACACGGCCATTTT-GGATGTACATATGTAGCTAGTGT-------TGCTG----TTTTCATTGTTA----------------TGTAT--TCCTACGCGTCATTTCAAAAACGTTGATTAAAGTAT----TT--TGATGTGGGAAACTAT-TTGTTTTACTATTAAGTAT-TT-A-A--AA---AATTAAATGATATA-AAATG-AA---------T-C------TTA----------T-----CATTG--G-AAA---------AATTGG--AC-------GGAAAA-TCTTCTCATCA-ATGCATCACG-CTC-ATTG-ATA---CAGT-T--TT---------------CC--TTTGACACAGCC--ATC--AACAAA--AG-AATTCataactctacctagcctgaccacacggccattttggatgtacatatgtagctagtgttgctgttttcattgttatgtattcctacgcgtcatttcaaaaacgttgattaaagtattttgatgtgggaaactatttgttttactattaagtatttaaaaaattaaatgatataaaatgaatcttatcattggaaaaattggacggaaaatcttctcatcaatgcatcacgctcattgatacagttttcctttgacacagccatcaacaaaagaattc
gi|20 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatttgatagaaattacgacgatttcgattgaccgaaatattcgtttgatttctgcatcaaagtaaacctgagagtccgctatccaccaccggtgttcaacatctccgcagcacacaccaatcaccgcagcacacactgaatcaccgcagcacacaccgaatcaccgcctgccctctccctaaaATCATTTAATA--TTCATAGTCTTTAAAAT-GTAAT--------TACAGCAATTTTTGATGGGCAGCAAAA-TTC-GTTT-GA-TT
gi|21 : ---AGGT-T--TTACATCACAA-TTTTTTC--TTTGATACCGCG--ATC--A--AAAAGAG-AATTa
gi|22 : taaTTG-ATG---AAGTAT--TTCCGTC-C-A-TTTTCCCCATTTGAAAGCAAT--ATC--AAGAAAAGAataagattcatttc
gi|23 : tttcttttctAAATCATTTAATT--TTCATTGTCTT---GAT-GAAATTACAGCAGTACGACGATTTT-GATTGGCCAAAAag
gi|24 : TTTTCAACATA--------G-CGC-A----A-A---AAGT-T--TTCCGTC-CAA-TTTTCCA--TTTGACACCACC--ATC--AAGAg
gi|25 : aACGTTAATTAAAGCTT----TT--CGAGGAGAAAAACTAT-TTGATTTAC-------TAT-TTGA-A--AACATTAT
gi|26 : ---AGGT-TGATTCCGTC-TAA-TTT-CCC--TTAGATACCACC--ATC--AAGAAAAGc
gi|27 : cGC-ATTG-CTG---AAAC-T--TTCCGTC-CAA-TCTTGTC--TTTGA------C--ATC--AAGAAAcatt
gi|3 : AAATCATTTAATA--TTTATTGTCTT---GAT-GAAAT--------TACAGCGATTTT-GATTGGCTGAAAAA-TTC-GTTT-GA-TTTTTGCA-T-TAACGAAAACCT-----A-CGAGTC-GC-T-T--T-C----CACTA---TTC-------CCACGACACA-ACCAGT-G-TTCAA---TATCT---C--C-TCAAAC------AC--AAT----GCAACATACACATCGAGTCATCGCTTGTCTTCTCCCT--TCATATCTGATTCACATTTTAACCATTACACCTTTAATATGGTGTCCAATCCATTT--AAT---TCTGCTCCTT-C-----NGTTCACATTTTAACCATTACACCTTTAATTTGGTGTCCAATCCATTT--AATTCTG-CTC--------CTT--C--C---T-GACCTGAACGTGCAGCCATTTT-GAATGTA------------GAGT-------T--TG----TTT-CATTTTTA-C-------ATGTACATATAT--TCCTACGCGTGATGTCAAAAACGTTAATTAAAGCTT----TT--TCATGAGAGAAACTAT-TTGTTTTGC-------TAT-TT-ACA--AACATAATCAGATGATA-A-GAAT-------------T-C------TTT----------T-----CAAAG--G-GAG---------AATTGG--GC-------GAAAAA-CTTTTTTATCA-AT-------G-CGT-ATTG-AGG---AAGT-T--TTGCGCC-CAT-TTTCCCC--GTTGATACGGCC--ATC--AAGAAAAAAT-AATTC
gi|4 : TATCTT---CAT-TAAAT--------TACGGCGATTTA-TATTG-CCGAAAAG-ACC-GTTT-GA-TTTCGGCA-T-CAAGGAAATCAT-----A-TTAGTC-GC-T-T--T-CCA--C--CG---TTC-------CTATGACACA-ACCAGTGG-C-CAA---TGTCT---C--C------------------------GCAGCAT--ACATGGAGTCA-CGC--GTCCTCTTACT--TCA--------------TTTAACCA--G---CTTTAATTTGGCGCCCAATCCATTTAAAAT---T-TGCTCAT--T-----AA---GTCTTT
gi|4 : -T-----ACTTCAT---TTAACCAG-----CTTTAATTTGGCGCCCAATCCATTTAAAATT-TG-CTC-ATTAAGTCTT--T--C---T-ATCCTGAACTCGCGGCCACTTT-Gctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|4 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctctATTAAAGCTT----GT--CGATGAGTCAACCAAT-TTGTATCAC-------TATATG-G-A--AACATGAAAAGATCATA-C-TAAT--TA---------T-C------TT------------------GATG--G-GAA---------AATTGG--AT-------GGAAAA-----TGCGT---A--------G-CGC-ATTG-ATG---AAGT-T--TTTCGTC-TGATTTTTCCC--TAAGACACGGCG--TCC--AAGAAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|5 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctcttacttcatttaaccagctttaatttggcgcccaatccatttaaaatttgctcattaagtctttctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatTTTT-GCTTGTCCTAAACA-GTC-GTTT-GATTTTTGGCA-T-CGAACAAGAGCT-----C-CGA-----------------------G---TTC-------CTACGA-------CAAT-A-C-CAA---CGTCT---C--CAC--AAC------TT--AAA----GTGATA------------CACTGCTTGTCCTGTTAGT-----TATCTTATTTATCTTATActtacacgattcacttcttgggtaaagaaat
gi|6 : tttgccttaatttgatagaaatctagtgtcaaaccattttttgtgaagtgtattttaataaaacccagctagactactttgttgacatcggtttaagttactgcaatgtcataatgaatacccagtcattccatattggttgcaaaattgttcatgagaaatatattttactgtatcaaataccgaagatgtaaagataaataaattgtaagatgcacatcaatctgtatgctgacaacaagacctatattataaattattTTAATA--TCTATTGTCTT---GAC-GAAAT--------TACAGCGAATTT-GAATGGCCAACAAA-TTC-GTTTAGA-TTTCGCAA-TACAAGTAAAACCT-----ATCGAGTC-GC-T-T--C-CA---C--CA---TTC-------CCGCGACACA-GCCA-------CAG---CTT--------------AC------AC----C----GAATCAC-CGC------TCAGCGCTGGTTCTCTTTCT--TCTTATCTAATTCTTCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GAT---TCTGCCCAg
gi|6 : tcactataacgtcacatcatttaatatttattatgttaaT---TCTTCTTATC-T-----AATTCTTCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GATTCTG-CCC-AATAA--CTT--C--TAAGT-GACCTGATCTCACAGCCATTTT-GAATGAA------------GTGT-------T--GT----TTT-TATTGTTA-C-------A-ATAAATGTAT--TCCTACGCGCCATTTTAAAAA----AAAAACAACTTGAGATTAATGATGAGAGAAACTataacttctaagtgacctgatctcacagccattttgaatgaagtgttgtttttattgttacaataaatgtattcctacgcgccattttaaaaaaaaaacaacttgagattaatgatgagagaaact
gi|7 : tcactataacgtcacatcatttaatatttattatgttaattaatatctattgtcttgacgaaattacagcgaatttgaatggccaacaaattcgtttagatttcgcaatacaagtaaaacctatcgagtcgcttccaccattcccgcgacacagccacagcttacaccgaatcaccgctcagcgctggttctctCATTT--AGTCCCTCTTCTCTTC-TCCGACAATCCATCCT--AACCATT-CACCTC-AATT-GTCGTCCACTC-ATT----ATTCTGGCCC-AATAA--CTCT-C--C---T-GACCTGAACGCACAGACATT----GATGTG------------GT------------TG----G-------GTTAGT-------ATGCAAATA-ATGATCCTAAA-GCCAT---AAAAA---TAATTCAAG--T----TT--TGATGACTGAAAACATCTTGATT-AC-------TAT-TC-A-ATAAACATAATTAAATAA-A-A-AAATCAAA---------T-CGACTCGTTCCTAATGCGGAT-----CTAAG--GAGAA---------AATTGG--AC--------GAAAA-CTTT----TCA------------------TG-AT----ACGT-T--TT-CG-C-CAA-AGGTCC----TTGCTACTGCCAAATCTAAAGAAAA
gi|8 : ---GAT-TAAAT--------AATGGCGATTTT-GATTGGCCGAAAAAATTC-GTTT-GA-TTTCTACA-T-GAAAGAAAACCT-----A-CGA----------------------TG---TTC------------AC-TA-ACTAGT-GAT-CAGATTCCTCTAACC--C-C--ACCCCCCTCAC--AAT----GCACCA--CACATCGAGTCTCCGCTTGTCCTCTT--T--TTGTATCTAATTCATCTTCCAACCATTGCACCTTTAATTTTGCAT----TCTGCTC--AATA--TCTCCTCacacatctta
gi|8 : ATC-T-----AATTCATCTTCCAACCATTGCACCTTTAATTTTGC----------------ATTCTG-CTCAA-TAT--CTC--CT-C---TAGACCTGAACAAACAGCGACTTG-GAATGTA--------------GT-------T--TGTCGTTTT-CATTGTTA-C-------tagacctgaacaaacagcgacttggaatgtagtttgtcgttttcattgttact
gi|9 : gattaaataatggcgattttgattggccgaaaaaattcgtttgatttctacatgaaagaaaacctacgatgttcactaactagtgatcagattcctctaaccccacccccctcacaatgcaccacacatcgagtctccgcttgtcctctttttgtTGTAT--TCCTACGCACCATTTCAAAAACTTAAATTAATTGTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-CT-A-A--AACATAATAAACGGATA-AGAAAT--AAATCTTTTTCT-T------TTT----------T-----TGATGGCG-GAATAAAACTTCAATTGGAAACTCGGGCGGGAAAA-C----GCGT---A--------G-TGC-ATTA-ATG---AAGT-T--TTCGGTA-CAA-TTTTCAG--CTTGATGTGGCC--ATC--AAATAAAGAATAATTt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAAACCCACTGCACTCATTGCACATCGACTTAAGTATAATATATAATCATAAAAATACCAGCACTCATTGTTGATAGCAAAACAGTTCATGAGAATAACATCTTACTTTATTTGACATCGAACAGAGAAGTAAA
Unaligned ( gi|28 ): AAAACTGTTTTCTTATGCCTCAGGCTTAAGTTTTGTGAT
Unaligned ( gi|29 ): TGTTTGATCATGTAATACAGGGTCAAAATGGCACAG
Unaligned ( gi|30 ): ATTTTTTTTTTAATTATTAAAAAATTGATTAATA
Alignments
lowQualScore : 11 111 11111111 1111111 3333333333333333 1111111 22222 6666666666666666666666666666666 2222 1111111 111 11111 1 33333333333333333333 44444444444444444444444444444444 33333333333 2222222 111 66666666666666666666666666666666666666666 111111111 1111111 222222222222
lowQualScore : 11 222 4 66666666 3 0 4 4 4 4 1 4 4 2222222 6666 7777777777777777 777 4444444 4 0 66666 777 1111111111111111111111111111111 1 5555 0 4 0 6 0000000 3 5 1 1 999 111 1 4 00000 0 1 6 1 0 9999 5 33333333333333333333 4 999 0 1 4 44444444444444444444444444444444 8 77777777777 3 66 3 0 5 44 9999 66 5 1 1111111 6 666 99 1 0 111 66666666666666666666666666666666666666666 2 66 4 777777777 55 3333333 777777777 0 888888888888 3 2 77777 2 33 0 2 22 33 3 33 33 8
lowQualScore : .. ... . ........ . . . . . . . . . ....... .... ................ ... ....... . . ..... ... ............................... . .... . . . . ....... . . . . ... ... . . ..... . . . . . .... . .................... . ... . . . ................................ . ........... . .. . . . .. .... .. . . ....... . ... .. . . ... ......................................... . .. . ......... .. ....... ......... . ............ . . ..... . .. . . .. .. . .. .. .
lowQualScore : 00 222 4 11111111 6 5 0 0 0 0 1 4 4 6666666 4444 6666666666666666 888 4444444 4 9 44444 888 7777777777777777777777777777777 0 8888 1 5 1 6 9999999 0 7 8 0 111 000 6 0 00000 1 0 5 4 1 1111 0 99999999999999999999 4 888 1 3 0 88888888888888888888888888888888 9 66666666666 0 99 1 2 6 00 4444 11 0 7 7777777 7 888 22 0 8 888 99999999999999999999999999999999999999999 2 11 4 888888888 55 0000000 555555555 4 888888888888 1 9 44444 5 44 4 5 88 44 5 44 44 0
consensus : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCT-----A-CGAGTC-GC-T-T--C-C----C--CG---TTC-------CCACGACACA-ACCAGT-G-T-CAG---CGTCT---C--C-C--AAC------AC--AAT----GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTNCT--TCATATCTNATTCATCTTTTAACCATTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTC-A-TAA--CTC--C--C---T-GACCTGAACGCGCAGCCATTTT-GAATGTA------------GTGT-------T--TG----TTT-CATTGTTA-C-------ATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A-A--AACATAATNAAATGATA-A-AAAT--AA---------T-C------TTT----------T-----CGAAG--G-GAA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
Reference ( family-1177 ) : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCT-----A-CGAGTC-GC-T-T--C-C----C--CG---TTC-------CCACGACACA-ACCAGT-G-T-CAG---CGTCT---C--C-C--AAC------AC--AAT----GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTNCT--TCATATCTNATTCATCTTTTAACCATTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTC-A-TAA--CTC--C--C---T-GACCTGAACGCGCAGCCATTTT-GAATGTA------------GTGT-------T--TG----TTT-CATTGTTA-C-------ATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A-A--AACATAATNAAATGATA-A-AAAT--AA---------T-C------TTT----------T-----CGAAG--G-GAA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
gi|1 : AAATCATTTTATAAATCCGTTTTCTTC--G---GACAT--------T-----TATTTC-GTTTGTTCTAAAAA-TGC-ATTT-GA-TTTTGACACT-CAACGAAAACCTTTGAAA-TGAGT--GC-A-T--CGC----T--CG---T-----------AAGATACA-ACCAAT-GCT-CGG---CATCT---C----------------------T----ACATCAT-T-CATCGAGGCAGCGCTTGTTATCTTTCTAATCAT--CTTATTCATCATTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AAC---TCTGTT--TCAT-----AATT
gi|1 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaT---TCTAATCATC-T-----TATTCATCATTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AACTCTGTTTC-A-TAA----------T---T-GACTTAAACATACTACCA-TCT-GA--GTA------------GTGTTA-----T--TG----TTT-TAgacttaaacatactaccatctgagtagtgttattgttttaagtagttcttaagtagttttagaatgcatatctttgtttaagtggtacctactgtgtgcatatgtattcgtaagcggcattttaaaaaggccaattaaagccttttcataagaaaaagtattt
gi|1 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaaaatcattttataaatccgttttcttcggacatttatttcgtttgttctaaaaatgcatttgattttgacactcaacgaaaacctttgaaatgagtgcatcgctcgtaagatacaaccaatgctcggcatctctacatcattcatcgaggcagcgcttgttatctTTTTAGAATGCAT-----------ATCT-------T--TG----TTT-AAGTGGTA-CCTACTGTGTGCATATGTAT--TCGTAAGCGGCATTTTAAAAAGGCCAATTAAAGCCT----TT--TCATAAGAAAAAGTAT-TTagtagttcttaagtagttttagaatgcatatctttgtttaagtggtacctactgtgtgcatatgtattcgtaagcggcattttaaaaaggccaattaaagccttttcataagaaaaagtattt
gi|10 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaaaatcattttataaatccgttttcttcggacatttatttcgtttgttctaaaaatgcatttgattttgacactcaacgaaaacctttgaaatgagtgcatcgctcgtaagatacaaccaatgctcggcatctctacatcattcatcgaggcagcgcttgttatctttctaatcatcttattcatcatttagatattacgcccttaatttcgcgcccaatccactaactctgtttcataattgacttaaacatactaccatctgagtagtgttattgttttaagtagttcttaagtagCATCT----T---TCTTCGTATC-T-----AATTTATTTTTTAACCAATGCACCTTTAATTTGATGTTAAATCCATTT--AACTCTACCTG-A-TA---------------T-GAACTGAA--AATAGC---GTT-GAACAT--------------TAT----------------TTT-CATTGTTA-C---------GTACCAATAT--CGCTAATTGCTATTTCGAAAACGTTAATTAAAAAAA----TT--TAATGAGAGAAACTAT-
gi|11 : tcaccgcttgtGTCTT---AAT-AAAAT--------TATAGTGATTAT-AAATAGCAGAAAA---TCAGTTT-GA-TTTCTACA-T-TAAAAAAAACCC-----A-CAAGCC-GCAT-TA-C-C----C--CA---TTC-------CCACGACACC-GCCAGT-G-TCCAA---TGTCT---CCTC-C--AAC------AC--AAT----GCAACAT-C-CATCGAGGCAC
gi|13 : TT-A-CAA--CTC--CACC---T-GAGCTGAACATTCAGTTATTTT-GTATGTA------------GTGTAATGTTGT--TG----TTTTCATTGTGA----------TGTACATGTAT--TCCTACGCGCTATGTAAAAAA
gi|14 : ttaatttagcacagacgttacaataAAG--G-GAA---------CATTGG--GT-------GGCAAATCTTTTTCGTCA-A--------CTCGC-ATTG-ATG---AAGT-T--TTCCATC-CAA-TTTTGAC--TTTGATTCGGCC--ATC--AAGA
gi|15 : gaaataaatcttgcaattccattcgggattaTGA--AC-------GGAAAA-CTTTTTCGTCA-AA-------G-CGC-GTTG-A------AAT-T--TTCCGTC-CAA-TTTTCCC--TTTGATATAGCC--ATC--AAAAAAAGA
gi|15 : tgaatcttgtaat----------T-----CAAAG--G-GAA---------AATTGG--AC-------GGAAAA-TT------TCA-AC-------G-CGC-TTTG-ACGAAAAAGT-T--TTCCGTT-CAG------------------CGCC--ATA--AAGAAAAAAG-AATgcgccataaagaaaaaagaatgata
gi|16 : tgaatcttgtaattctttttttgatggctata----------T-----CCAAG--A-GAA---------ATTTGG--AA-------GAAACA-CTTTTTCATCA-----------------TTG-ATG---AAGT-T--TTCCATC-CAA--TTTCCC--CTTGATACCGCC--ATC--AAGAAAAGAgata
gi|17 : aataaatcttaaaattcttaatggcggtaAT--AA---------TTC------TTT----------TTTTGACGGAG--A--AA---------AACTAA--AC-------AGAAAA-TTT-------A-A--------A-C---ATCA-A-A---AAGT-T--TTCGGTC-CAA-TTTTCCC--TTTGATACCACC--ATC--AAGAAAAGAa
gi|18 : aatcttCGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTCCGGCA-T-CAAAGAAAACCT-----G-CGAATC-GC-T-TTCC-C----C--CG---TTC-------CCACGACACA-ATCTGT-GTT-CAG---CGTCT---att
gi|19 : tt-CTTGTTCATCA-AT-------G-CGCTACAGCATG---AAGT-T--TTCTGTC-CAG-TTTTCCC--TTTGATATGGTC--ATT--AAAAGAA
gi|2 : caatcttacaaTT---GATAGAAAT--------TACGACGATTTC-GATTGACCGAAATA-TTC-GTTT-GA-TTTCTGCA-T-CAAAGTAAACCT-----G-AGAGTCCGC-TAT--C-CACCAC--CGGTGTTCAACATCTCCGCAGCACACACCAAT-----CAC---CGCAG---C--A-C--A-C------ACTGAATCACCGCAGCA--CACACCGAATCACCGCCTGCCCTCTCCCT--AAACATTTAATTCATCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TAT---TCTGCTCA
gi|2 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatCATT-T-----AATTCATCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TATTCTG-CTC-AATAA--CTCTAC--C---T-AGCCTGACCACACGGCCATTTT-GGATGTACATATGTAGCTAGTGT-------TGCTG----TTTTCATTGTTA----------------TGTAT--TCCTACGCGTCATTTCAAAAACGTTGATTAAAGTAT----TT--TGATGTGGGAAACTAT-TTGTTTTACTATTAAGTAT-TT-A-A--AA---AATTAAATGATATA-AAATG-AA---------T-C------TTA----------T-----CATTG--G-AAA---------AATTGG--AC-------GGAAAA-TCTTCTCATCA-ATGCATCACG-CTC-ATTG-ATA---CAGT-T--TT---------------CC--TTTGACACAGCC--ATC--AACAAA--AG-AATTCataactctacctagcctgaccacacggccattttggatgtacatatgtagctagtgttgctgttttcattgttatgtattcctacgcgtcatttcaaaaacgttgattaaagtattttgatgtgggaaactatttgttttactattaagtatttaaaaaattaaatgatataaaatgaatcttatcattggaaaaattggacggaaaatcttctcatcaatgcatcacgctcattgatacagttttcctttgacacagccatcaacaaaagaattc
gi|20 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatttgatagaaattacgacgatttcgattgaccgaaatattcgtttgatttctgcatcaaagtaaacctgagagtccgctatccaccaccggtgttcaacatctccgcagcacacaccaatcaccgcagcacacactgaatcaccgcagcacacaccgaatcaccgcctgccctctccctaaaATCATTTAATA--TTCATAGTCTTTAAAAT-GTAAT--------TACAGCAATTTTTGATGGGCAGCAAAA-TTC-GTTT-GA-TT
gi|21 : ---AGGT-T--TTACATCACAA-TTTTTTC--TTTGATACCGCG--ATC--A--AAAAGAG-AATTa
gi|22 : taaTTG-ATG---AAGTAT--TTCCGTC-C-A-TTTTCCCCATTTGAAAGCAAT--ATC--AAGAAAAGAataagattcatttc
gi|23 : tttcttttctAAATCATTTAATT--TTCATTGTCTT---GAT-GAAATTACAGCAGTACGACGATTTT-GATTGGCCAAAAag
gi|24 : TTTTCAACATA--------G-CGC-A----A-A---AAGT-T--TTCCGTC-CAA-TTTTCCA--TTTGACACCACC--ATC--AAGAg
gi|25 : aACGTTAATTAAAGCTT----TT--CGAGGAGAAAAACTAT-TTGATTTAC-------TAT-TTGA-A--AACATTAT
gi|26 : ---AGGT-TGATTCCGTC-TAA-TTT-CCC--TTAGATACCACC--ATC--AAGAAAAGc
gi|27 : cGC-ATTG-CTG---AAAC-T--TTCCGTC-CAA-TCTTGTC--TTTGA------C--ATC--AAGAAAcatt
gi|3 : AAATCATTTAATA--TTTATTGTCTT---GAT-GAAAT--------TACAGCGATTTT-GATTGGCTGAAAAA-TTC-GTTT-GA-TTTTTGCA-T-TAACGAAAACCT-----A-CGAGTC-GC-T-T--T-C----CACTA---TTC-------CCACGACACA-ACCAGT-G-TTCAA---TATCT---C--C-TCAAAC------AC--AAT----GCAACATACACATCGAGTCATCGCTTGTCTTCTCCCT--TCATATCTGATTCACATTTTAACCATTACACCTTTAATATGGTGTCCAATCCATTT--AAT---TCTGCTCCTT-C-----NGTTCACATTTTAACCATTACACCTTTAATTTGGTGTCCAATCCATTT--AATTCTG-CTC--------CTT--C--C---T-GACCTGAACGTGCAGCCATTTT-GAATGTA------------GAGT-------T--TG----TTT-CATTTTTA-C-------ATGTACATATAT--TCCTACGCGTGATGTCAAAAACGTTAATTAAAGCTT----TT--TCATGAGAGAAACTAT-TTGTTTTGC-------TAT-TT-ACA--AACATAATCAGATGATA-A-GAAT-------------T-C------TTT----------T-----CAAAG--G-GAG---------AATTGG--GC-------GAAAAA-CTTTTTTATCA-AT-------G-CGT-ATTG-AGG---AAGT-T--TTGCGCC-CAT-TTTCCCC--GTTGATACGGCC--ATC--AAGAAAAAAT-AATTC
gi|4 : TATCTT---CAT-TAAAT--------TACGGCGATTTA-TATTG-CCGAAAAG-ACC-GTTT-GA-TTTCGGCA-T-CAAGGAAATCAT-----A-TTAGTC-GC-T-T--T-CCA--C--CG---TTC-------CTATGACACA-ACCAGTGG-C-CAA---TGTCT---C--C------------------------GCAGCAT--ACATGGAGTCA-CGC--GTCCTCTTACT--TCA--------------TTTAACCA--G---CTTTAATTTGGCGCCCAATCCATTTAAAAT---T-TGCTCAT--T-----AA---GTCTTT
gi|4 : -T-----ACTTCAT---TTAACCAG-----CTTTAATTTGGCGCCCAATCCATTTAAAATT-TG-CTC-ATTAAGTCTT--T--C---T-ATCCTGAACTCGCGGCCACTTT-Gctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|4 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctctATTAAAGCTT----GT--CGATGAGTCAACCAAT-TTGTATCAC-------TATATG-G-A--AACATGAAAAGATCATA-C-TAAT--TA---------T-C------TT------------------GATG--G-GAA---------AATTGG--AT-------GGAAAA-----TGCGT---A--------G-CGC-ATTG-ATG---AAGT-T--TTTCGTC-TGATTTTTCCC--TAAGACACGGCG--TCC--AAGAAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|5 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctcttacttcatttaaccagctttaatttggcgcccaatccatttaaaatttgctcattaagtctttctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatTTTT-GCTTGTCCTAAACA-GTC-GTTT-GATTTTTGGCA-T-CGAACAAGAGCT-----C-CGA-----------------------G---TTC-------CTACGA-------CAAT-A-C-CAA---CGTCT---C--CAC--AAC------TT--AAA----GTGATA------------CACTGCTTGTCCTGTTAGT-----TATCTTATTTATCTTATActtacacgattcacttcttgggtaaagaaat
gi|6 : tttgccttaatttgatagaaatctagtgtcaaaccattttttgtgaagtgtattttaataaaacccagctagactactttgttgacatcggtttaagttactgcaatgtcataatgaatacccagtcattccatattggttgcaaaattgttcatgagaaatatattttactgtatcaaataccgaagatgtaaagataaataaattgtaagatgcacatcaatctgtatgctgacaacaagacctatattataaattattTTAATA--TCTATTGTCTT---GAC-GAAAT--------TACAGCGAATTT-GAATGGCCAACAAA-TTC-GTTTAGA-TTTCGCAA-TACAAGTAAAACCT-----ATCGAGTC-GC-T-T--C-CA---C--CA---TTC-------CCGCGACACA-GCCA-------CAG---CTT--------------AC------AC----C----GAATCAC-CGC------TCAGCGCTGGTTCTCTTTCT--TCTTATCTAATTCTTCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GAT---TCTGCCCAg
gi|6 : tcactataacgtcacatcatttaatatttattatgttaaT---TCTTCTTATC-T-----AATTCTTCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GATTCTG-CCC-AATAA--CTT--C--TAAGT-GACCTGATCTCACAGCCATTTT-GAATGAA------------GTGT-------T--GT----TTT-TATTGTTA-C-------A-ATAAATGTAT--TCCTACGCGCCATTTTAAAAA----AAAAACAACTTGAGATTAATGATGAGAGAAACTataacttctaagtgacctgatctcacagccattttgaatgaagtgttgtttttattgttacaataaatgtattcctacgcgccattttaaaaaaaaaacaacttgagattaatgatgagagaaact
gi|7 : tcactataacgtcacatcatttaatatttattatgttaattaatatctattgtcttgacgaaattacagcgaatttgaatggccaacaaattcgtttagatttcgcaatacaagtaaaacctatcgagtcgcttccaccattcccgcgacacagccacagcttacaccgaatcaccgctcagcgctggttctctCATTT--AGTCCCTCTTCTCTTC-TCCGACAATCCATCCT--AACCATT-CACCTC-AATT-GTCGTCCACTC-ATT----ATTCTGGCCC-AATAA--CTCT-C--C---T-GACCTGAACGCACAGACATT----GATGTG------------GT------------TG----G-------GTTAGT-------ATGCAAATA-ATGATCCTAAA-GCCAT---AAAAA---TAATTCAAG--T----TT--TGATGACTGAAAACATCTTGATT-AC-------TAT-TC-A-ATAAACATAATTAAATAA-A-A-AAATCAAA---------T-CGACTCGTTCCTAATGCGGAT-----CTAAG--GAGAA---------AATTGG--AC--------GAAAA-CTTT----TCA------------------TG-AT----ACGT-T--TT-CG-C-CAA-AGGTCC----TTGCTACTGCCAAATCTAAAGAAAA
gi|8 : ---GAT-TAAAT--------AATGGCGATTTT-GATTGGCCGAAAAAATTC-GTTT-GA-TTTCTACA-T-GAAAGAAAACCT-----A-CGA----------------------TG---TTC------------AC-TA-ACTAGT-GAT-CAGATTCCTCTAACC--C-C--ACCCCCCTCAC--AAT----GCACCA--CACATCGAGTCTCCGCTTGTCCTCTT--T--TTGTATCTAATTCATCTTCCAACCATTGCACCTTTAATTTTGCAT----TCTGCTC--AATA--TCTCCTCacacatctta
gi|8 : ATC-T-----AATTCATCTTCCAACCATTGCACCTTTAATTTTGC----------------ATTCTG-CTCAA-TAT--CTC--CT-C---TAGACCTGAACAAACAGCGACTTG-GAATGTA--------------GT-------T--TGTCGTTTT-CATTGTTA-C-------tagacctgaacaaacagcgacttggaatgtagtttgtcgttttcattgttact
gi|9 : gattaaataatggcgattttgattggccgaaaaaattcgtttgatttctacatgaaagaaaacctacgatgttcactaactagtgatcagattcctctaaccccacccccctcacaatgcaccacacatcgagtctccgcttgtcctctttttgtTGTAT--TCCTACGCACCATTTCAAAAACTTAAATTAATTGTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-CT-A-A--AACATAATAAACGGATA-AGAAAT--AAATCTTTTTCT-T------TTT----------T-----TGATGGCG-GAATAAAACTTCAATTGGAAACTCGGGCGGGAAAA-C----GCGT---A--------G-TGC-ATTA-ATG---AAGT-T--TTCGGTA-CAA-TTTTCAG--CTTGATGTGGCC--ATC--AAATAAAGAATAATTt
blockSeqs : . TAA A TACAGCAG T A A A T T . A AT GTCC TATCCACCAC GTG AACATCT C GTC ATT AACCCCACCCCCCTCACAAT A TACA C C AAACA A G A C AAA CCC A . CCGAC A G C TAAA C AATAACTTCTAAG A ATT T A CATATGTAGCTAGTGTTGCTG T GTAT C GA T C AA GAGA AA C T . A GA TA C AG CAAATCGACTCGTTCCTAATGCGGAT C GC A TAAAACTTC AA TCGGGCG CTTTTTCG ATGCATCACG T C CGAAA A GA A TT CA A AA TA T
blockSeqs : . . . . . . . . . G . . A GCC ATTACCC . . . GTT . CACACACTGAATCACC G CCG C C TCATA G T A C T A T . . G G T TA G AATAACTCTACC . ACA T . GTGTAATGTTGTTG T CAT C . G C TA . . . T . . AC . A A AAATCTTTTTCTTTTTT G . . . . . CTTTTTCA AAG . . TG . . . T . C . . .
blockSeqs : . . . . . . . . . T . . G ATC TTTCCCC . . . GTT . CCTCCAACACAAT A TC T A TCTTA T C T C A . G . . T A C TT . ATTAAGTCTTTC . GTG T . GTTTGTCGT . CA C . T C CT . . . C . . G . T C GAATCTTAT A . . . . . CTTGTTCA ACG . . TG . . . T . C . . .
blockSeqs : . . . . . . . . . T . . G GTC TTTCCAC . . . GGC . CCTCAAACACAAT G CA C A TTGTA A T A T G . G . . G T C TA . ACAACTCCACC . TCG T . TATCTTTG . C A . G C CT . . . T . . A . A A TCTTTT A . . . . . TCTTCTCA ATG . . TA . . . T . C . . .
blockSeqs : . . . . . . . . G . . A GTC TTTCCAC . . . GAT . CCACAACTTAAA A TA G T TCA A . . . A . G . . C G C TG . AATAACTCTCC . TCA C . GAGTTTG . T A . T C CT . . . . . . A . TATCTT G . . . . . CTTTTTTA TAG . . TG . . . T . G . .
blockSeqs : . . . . . . . . G . . A GTC TTCCAC . . . AC . ACACC T CA C . TA . A . G . . T . . . . AATATCTCCTC . GCA T . GTGTTGT . . . . T . CT . . . T . . . . . TGCG ATG . . TG . . . T . A . .
blockSeqs : . . . . . . . . G . . C . . . . . . . CC C . . . . T . . T . . . . CTTCC . AAA T . GTTG . . . . GT . . . G . . . . . CTTT AA . . GG . . . T . C . .
blockSeqs : . . . . . . . . T . . A . . . . . . . . T . . ATA . AA C . TAT . . . . . . . . . CGCG AG . . TG . . . T . C . .
blockSeqs : . . . . . . C . . . . . . TTT AG . . TG . . . T . C . .
blockSeqs : . TT . . . A . . . T . C . .
blockSeqs : . . . A . . . A . G . .
blockSeqs : . . T . . . T . G . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . G . .
blockSeqs : . . . . . . . .
blockSeqCons : ** *** A****** GTC* TTTCCAC********* CCCACACAAT********************* TCGTA** AATAACTCTACC******** GTGTTGT************************* CAT******** ******* A** NAATCTTTTCT****************************** CTTTTTCG*
originalCons : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCT-----A-CGAGTC-GC-T-T--C-C----C--CG---TTC-------CCACGACACA-ACCAGT-G-T-CAG---CGTCT---C--C-C--AAC------AC--AAT----GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTNCT--TCATATCTNATTCATCTTTTAACCATTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTC-A-TAA--CTC--C--C---T-GACCTGAACGCGCAGCCATTTT-GAATGTA------------GTGT-------T--TG----TTT-CATTGTTA-C-------ATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A-A--AACATAATNAAATGATA-A-AAAT--AA---------T-C------TTT----------T-----CGAAG--G-GAA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
finalCons : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCTA------CGAGTC-GCTTTCCAC---------CG---TTC-------CCACGACACA-ACCAGT-G-T-CAG---CGTCTCCCACACAAT---------------------GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTNCTTCGTA--TCTNATTCATCTTTTAACCATTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGCACCTTTAATTTGGCGTCCAATCCATTT--AATTCTG-CTCAATAACTCTACC--------T-GACCTGAACGCGCAGCCATTTT-GAATGTAGTGTTGT-------------------------TTT-CATTGTTACAT--------GTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A-A--AACATAATNAAATGATAA--AAATNAATCTTTTCT------------------------------CGAAG--G-GAA---------AATTGG--AC-------GGAAAACTTTTTCG-TCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAAACCCACTGCACTCATTGCACATCGACTTAAGTATAATATATAATCATAAAAATACCAGCACTCATTGTTGATAGCAAAACAGTTCATGAGAATAACATCTTACTTTATTTGACATCGAACAGAGAAGTAAA
Unaligned ( gi|28 ): AAAACTGTTTTCTTATGCCTCAGGCTTAAGTTTTGTGAT
Unaligned ( gi|29 ): TGTTTGATCATGTAATACAGGGTCAAAATGGCACAG
Unaligned ( gi|30 ): ATTTTTTTTTTAATTATTAAAAAATTGATTAATA
Alignments
lowQualScore : 11 111 11111111 1111111 11111111111111 1111111 2222 66666666666666666666666666666 1111 22222 111 11111 222222222 111 444444444444444444444444444444444 11111111 2222222 111 666666666666666666666666666666666666 111111111 1111111 222222222222
lowQualScore : 11 222 4 66666666 3 0 4 4 4 4 1 4 4 2222222 6666 88888888888888 4444444 4 0 6666 777 00000000000000000000000000000 2 5555 0 0 6 00000 3 5 6 1 999 222 1 44 11111 2 999 5 5 4 4 222222222 5 11 4 55 000 2 4 5 333333333333333333333333333333333 0 5 77777777 66 3 0 5 44 9999 66 5 1 1111111 6 666 99 1 0 000 333333333333333333333333333333333333 2 66 4 66 777777777 55 3333333 777777777 0 888888888888 3 2 77777 2 33 0 2 22 33 3 33 33 8
lowQualScore : .. ... . ........ . . . . . . . . . ....... .... .............. ....... . . .... ... ............................. . .... . . . ..... . . . . ... ... . .. ..... . ... . . . . ......... . .. . .. ... . . . ................................. . . ........ .. . . . .. .... .. . . ....... . ... .. . . ... .................................... . .. . .. ......... .. ....... ......... . ............ . . ..... . .. . . .. .. . .. .. .
lowQualScore : 00 222 4 11111111 6 5 0 0 0 0 1 4 4 6666666 4444 66666666666666 4444444 4 9 4444 888 99999999999999999999999999999 8 5555 2 1 6 11111 0 7 0 0 111 222 1 77 11111 9 555 0 0 5 5 999999999 0 00 4 22 000 9 1 0 000000000000000000000000000000000 1 0 88888888 99 1 2 6 00 4444 11 0 7 7777777 7 888 22 0 8 555 444444444444444444444444444444444444 1 11 4 11 888888888 55 0000000 555555555 4 888888888888 1 9 44444 5 44 4 5 88 44 5 44 44 0
consensus : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCT-----A-CGAGTC-GCTTTCCACC------GTTC-------CCACGACACA-ACCAGTG-T-CAG---CGTCT---CCC---AC-------AC--AAT----GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTNCT--TCGTATCTNATTCATCTTTTAACCATTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGC-ACC-TTTAATTTGGCGTCCAATCCATTT--AA----TTCTG-CTCAATAACT-CTACCTGACCTGAACGCGCAGCCATTTTGAATGT-A------------G--------TGTTG-------TTTTCATTGT-TA-CATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A-A--AACATAATNAAATGATA-A-AAATNAA------TCTT----TTC---T----CG------AAG--G-G--AA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
Reference ( family-1177 ) : AAATCATTTAATA--TTCATTGTCTT---GAT-GAAAT--------TACGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTTCGGCA-T-CAAAGAAAACCT-----A-CGAGTC-GCTTTCCACC------GTTC-------CCACGACACA-ACCAGTG-T-CAG---CGTCT---CCC---AC-------AC--AAT----GCANCAT-CACATCGAGTCACCGCTTGTCCTCTTNCT--TCGTATCTNATTCATCTTTTAACCATTGCACCTTTAATTTGGCGTCCAATCCATTT--AAT---TCTGCTCATC-T-----AATTCATCTTTTAACCANTGC-ACC-TTTAATTTGGCGTCCAATCCATTT--AA----TTCTG-CTCAATAACT-CTACCTGACCTGAACGCGCAGCCATTTTGAATGT-A------------G--------TGTTG-------TTTTCATTGT-TA-CATGTACATGTAT--TCCTACGCGCCATTTCAAAAACGTTAATTAAAGCTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-TT-A-A--AACATAATNAAATGATA-A-AAATNAA------TCTT----TTC---T----CG------AAG--G-G--AA---------AATTGG--AC-------GGAAAA-CTTTTTCGTCA-A--------G-CGC-ATTG-ATG---AAGT-T--TTCCGTC-CAA-TTTTCCC--TTTGATACCGCC--ATC--AAGAAAAGAG-AATTC
gi|1 : AAATCATTTTATAAATCCGTTTTCTTC--G---GACAT--------T-----TATTTC-GTTTGTTCTAAAAA-TGC-ATTT-GA-TTTTGACACT-CAACGAAAACCTTTGAAA-TGAGT--GC-----ATC------GCTC-------GTAAGATACA-ACCAATGCT-CGG---CATCT---C--------------------T----ACATCAT-T-CATCGAGGCAGCGCTTGTTATCTTTCTAATC--ATCTTATTCATCATTTAGATATTACGCCCTTAATTTCGCGCCCAATCCA-CT--AAC---TCTGTT--TCAT-----AATTGA---CTTAAACA-TACTACCATCTGA-GTAGTGTT--ATTGTTTT--AAGTAGTTCT---TAAGTAGTT-TTA--------GAATGCATATC---TTTG--TTTAA------------G--------TGGTA-------CCT--ACTGTGTG-CAT----ATGTAT--TCGTAAGCGGCATTTTAAAAAGGCCAATTAAAGCCT----TT--TCATAAGAAAAAGTAT-TT
gi|10 : tttgctttactctattaaaagtttaattccaaatcttgttttattctaaagttgcaataaaataaaaacccactgcactcgattttcgacatcggcgtaatataatatatagtcataaaaataccaagcactccatgttggatgcaaacacgttcatgaggaaatacatcttacttttattgcatctaacagagaagtaaaaattgcaaatctaaaaattaataattgctaacatgcctgcaaaaccatatactttaaacaCATCT----T---TCTTCGTATC-T-----AATTTATTTTTTAACCAATGC-ACC-TTTAATTTGATGTTAAATCCATT--------------------TAACT-CTACCTGATATGAAC------------TGAAAAT-A------------G--------CGTTGAACATTATTTTCATTGT-TA-C--GTACCAATAT--CGCTAATTGCTATTTCGAAAACGTTAATTAAAAAAA----TT--TAATGAGAGAAACTAT-
gi|11 : tcaccgcttgtGTCTT---AAT-AAAAT--------TATAGTGATTAT-AAATAGCAGAAAA---TCAGTTT-GA-TTTCTACA-T-TAAAAAAAACCC-----A-CAAGCC-GCATTACCCC------ATTC-------CCACGACACC-GCCAGTG-TCCAA---TGTCT---CCTCCAAC-------AC--AAT----GCAACAT-C-CATCGAGGCAC
gi|13 : ACAACT-CCACCTGAGCTGAACATTCAGTTATTTTGTATGT-A------------GTGTAATGTTGTTG-------TTTTCATTGT----GATGTACATGTAT--TCCTACGCGCTATGTAAAAAA
gi|14 : ttaatttagcacagacgttacaatatt-AAATAAA------TCTTGCAATTCCATT----CGGGATTAAAG--G-G--AA---------CATTGG--GT-------GGCAAATCTTTTTCGTCA-A--------CTCGC-ATTG-ATG---AAGT-T--TTCCATC-CAA-TTTTGAC--TTTGATTCGGCC--ATC--AAGA
gi|15 : gTGA--AC-------GGAAAA-CTTTTTCGTCA-AA-------G-CGC-GTTG-A------AAT-T--TTCCGTC-CAA-TTTTCCC--TTTGATATAGCC--ATC--AAAAAAAGA
gi|15 : tgaatcttgtaat---T----CA------AAG--G-G--AA---------AATTGG--AC-------GGAAAA-TT------TCA-AC-------G-CGC-TTTG-ACGAAAAAGT-T--TTCCGTT-CAG------------------CGCC--ATA--AAGAAAAAAG-AATgcgccataaagaaaaaagaatgata
gi|16 : tgaatcttgtaattctttttttgatggctata---T----CC------AAG--A-G--AA---------ATTTGG--AA-------GAAACA-CTTTTTCATCA-----------------TTG-ATG---AAGT-T--TTCCATC-CAA--TTTCCC--CTTGATACCGCC--ATC--AAGAAAAGAgata
gi|17 : aataaatcttaaaattcttaatggcggtaATAAT------TCTT----TTT---T----TG------ACG--G-AGAAA---------AACTAA--AC-------AGAAAA-TTT-------A-A--------A-C---ATCA-A-A---AAGT-T--TTCGGTC-CAA-TTTTCCC--TTTGATACCACC--ATC--AAGAAAAGAa
gi|18 : aatcttCGGCGATTTT-GATTGGCCGAAAAA-TTC-GTTT-GA-TTCCGGCA-T-CAAAGAAAACCT-----G-CGAATC-GCTTTCCCCC------GTTC-------CCACGACACA-ATCTGTGTT-CAG---CGTCT---att
gi|19 : tt-CTTGTTCATCA-AT-------G-CGCTACAGCATG---AAGT-T--TTCTGTC-CAG-TTTTCCC--TTTGATATGGTC--ATT--AAAAGAA
gi|2 : caatcttacaaTT---GATAGAAAT--------TACGACGATTTC-GATTGACCGAAATA-TTC-GTTT-GA-TTTCTGCA-T-CAAAGTAAACCT-----G-AGAGTCCGCTATCCACCACCGGTGTTCAACATCTCCGCAGCACACACCAAT----CAC---CGCAG---CAC---AC-------ACTGAATCACCGCAGCA--CACACCGAATCACCGCCTGCCCTCTCCCT--AAACATTTAATTCATCTTTTAAACAGTGCACCTTTAATTTGGTGTCTAATTTATAT--TAT---TCTGCTCA
gi|2 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatCATT-T-----AATTCATCTTTTAAACAGTGC-ACC-TTTAATTTGGTGTCTAATTTATAT--TA----TTCTG-CTCAATAACT-CTACCTAGCCTGACCACACGGCCATTTTGGATGT-ACATATGTAGCTAG--------TGTTGCTG----TTTTCATTGT-TA---------TGTAT--TCCTACGCGTCATTTCAAAAACGTTGATTAAAGTAT----TT--TGATGTGGGAAACTAT-TTGTTTTACTATTAAGTAT-TT-A-A--AA---AATTAAATGATATA-AAATGAA------TCTT----ATCA--T----T---------G--G-A--AA---------AATTGG--AC-------GGAAAA-TCTTCTCATCA-ATGCATCACG-CTC-ATTG-ATA---CAGT-T--TT---------------CC--TTTGACACAGCC--ATC--AACAAA--AG-AATTCataactctacctagcctgaccacacggccattttggatgtacatatgtagctagtgttgctgttttcattgttatgtattcctacgcgtcatttcaaaaacgttgattaaagtattttgatgtgggaaactatttgttttactattaagtatttaaaaaattaaatgatataaaatgaatcttatcattggaaaaattggacggaaaatcttctcatcaatgcatcacgctcattgatacagttttcctttgacacagccatcaacaaaagaattc
gi|20 : caccatcgaatgtcatacatgtatgatgcttgttttgtttatttgaagtctcttcgagaatttttcaatcatttgatagaaattacgacgatttcgattgaccgaaatattcgtttgatttctgcatcaaagtaaacctgagagtccgctatccaccaccggtgttcaacatctccgcagcacacaccaatcaccgcagcacacactgaatcaccgcagcacacaccgaatcaccgcctgccctctccctaaaATCATTTAATA--TTCATAGTCTTTAAAAT-GTAAT--------TACAGCAATTTTTGATGGGCAGCAAAA-TTC-GTTT-GA-TT
gi|21 : ---AGGT-T--TTACATCACAA-TTTTTTC--TTTGATACCGCG--ATC--A--AAAAGAG-AATTa
gi|22 : taaTTG-ATG---AAGTAT--TTCCGTC-C-A-TTTTCCCCATTTGAAAGCAAT--ATC--AAGAAAAGAataagattcatttc
gi|23 : tttcttttctAAATCATTTAATT--TTCATTGTCTT---GAT-GAAATTACAGCAGTACGACGATTTT-GATTGGCCAAAAag
gi|24 : TTTTCAACATA--------G-CGC-A----A-A---AAGT-T--TTCCGTC-CAA-TTTTCCA--TTTGACACCACC--ATC--AAGAg
gi|25 : aACGTTAATTAAAGCTT----TT--CGAGGAGAAAAACTAT-TTGATTTAC-------TAT-TTGA-A--AACATTAT
gi|26 : ---AGGT-TGATTCCGTC-TAA-TTT-CCC--TTAGATACCACC--ATC--AAGAAAAGc
gi|27 : cGC-ATTG-CTG---AAAC-T--TTCCGTC-CAA-TCTTGTC--TTTGA------C--ATC--AAGAAAcatt
gi|3 : AAATCATTTAATA--TTTATTGTCTT---GAT-GAAAT--------TACAGCGATTTT-GATTGGCTGAAAAA-TTC-GTTT-GA-TTTTTGCA-T-TAACGAAAACCT-----A-CGAGTC-GCTTTCCACT------ATTC-------CCACGACACA-ACCAGTG-TTCAA---TATCT---CCTCAAAC-------AC--AAT----GCAACATACACATCGAGTCATCGCTTGTCTTCTCCCT--TCATATCTGATTCACATTTTAACCATTACACCTTTAATATGGTGTCCAATCCATTT--AAT---TCTGCTCCTT-C-----NGTTCACATTTTAACCATTAC-ACC-TTTAATTTGGTGTCCAATCCATTT--AA----TTCTG-CTC--------CTTCCTGACCTGAACGTGCAGCCATTTTGAATGT-A------------G--------AGTTT-------GTTTCATTTT-TA-CATGTACATATAT--TCCTACGCGTGATGTCAAAAACGTTAATTAAAGCTT----TT--TCATGAGAGAAACTAT-TTGTTTTGC-------TAT-TT-ACA--AACATAATCAGATGATA-A-GAAT---------TCTT----T-----T----CA------AAG--G-G--AG---------AATTGG--GC-------GAAAAA-CTTTTTTATCA-AT-------G-CGT-ATTG-AGG---AAGT-T--TTGCGCC-CAT-TTTCCCC--GTTGATACGGCC--ATC--AAGAAAAAAT-AATTC
gi|4 : TATCTT---CAT-TAAAT--------TACGGCGATTTA-TATTG-CCGAAAAG-ACC-GTTT-GA-TTTCGGCA-T-CAAGGAAATCAT-----A-TTAGTC-GCTTTCCACC------GTTC-------CTATGACACA-ACCAGTGGC-CAA---TGTCT---CC------------------------GCAGCAT--ACATGGAGTCAC-GC--GTCCTCTTACT--TCAT--------------TTAACCA--GC---TTTAATTTGGCGCCCAATCCATTTAAAAT---T-TGCTCAT--T-----AA---GTCTTT
gi|4 : -T-----ACTTCAT---TTAACCAG------C-TTTAATTTGGCGCCCAATCCATTTAAAA----TT-TG-CTCATTAAGT-CTTTCTATCCTGAACTCGCGGCCACTTTGctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|4 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctctATTAAAGCTT----GT--CGATGAGTCAACCAAT-TTGTATCAC-------TATATG-G-A--AACATGAAAAGATCATA-C-TAATTA----------------TC---T----TG------ATG--G-G--AA---------AATTGG--AT-------GGAAAA-----TGCGT---A--------G-CGC-ATTG-ATG---AAGT-T--TTTCGTC-TGATTTTTCCC--TAAGACACGGCG--TCC--AAGAAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatattaaagcttgtcgatgagtcaaccaatttgtatcactatatggaaacatgaaaagatcatactaattatcttgatgggaaaattggatggaaaatgcgtagcgcattgatgaagtttttcgtctgatttttccctaagacacggcgtccaagaaaagacttacacgattcacttcttgggtaaagaaat
gi|5 : tatcttcattaaattacggcgatttatattgccgaaaagaccgtttgatttcggcatcaaggaaatcatattagtcgctttccaccgttcctatgacacaaccagtggccaatgtctccgcagcatacatggagtcacgcgtcctcttacttcatttaaccagctttaatttggcgcccaatccatttaaaatttgctcattaagtctttctatcctgaactcgcggccactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaactagtttgtttgtttacattactgcctggtttcatTTTT-GCTTGTCCTAAACA-GTC-GTTT-GATTTTTGGCA-T-CGAACAAGAGCT-----C-CGA--------------------GTTC-------CTACGA-------CAATA-C-CAA---CGTCT---C------C-------AC--AAC----------T-TAAAGTGATACACTGCTTGTCCTGTTAGT-----TATCTTATTTATCTTATActtacacgattcacttcttgggtaaagaaat
gi|6 : tttgccttaatttgatagaaatctagtgtcaaaccattttttgtgaagtgtattttaataaaacccagctagactactttgttgacatcggtttaagttactgcaatgtcataatgaatacccagtcattccatattggttgcaaaattgttcatgagaaatatattttactgtatcaaataccgaagatgtaaagataaataaattgtaagatgcacatcaatctgtatgctgacaacaagacctatattataaattattTTAATA--TCTATTGTCTT---GAC-GAAAT--------TACAGCGAATTT-GAATGGCCAACAAA-TTC-GTTTAGA-TTTCGCAA-TACAAGTAAAACCT-----ATCGAGTC-GC-TTCCACC------ATTC-------CCGCGACACA-GCCA------CAG---CTT-----------AC-------AC----C----GAATCAC-CGC------TCAGCGCTGGTTCTCTTTCT--TCTTATCTAATTCTTCTTTTAACCACTTCTCCTTTGATTTGGCTTTCAATCCATTT--GAT---TCTGCCCAg
gi|6 : tcactataacgtcacatcatttaatatttattatgttaaT---TCTTCTTATC-T-----AATTCTTCTTTTAACCACTTC-TCC-TTTGATTTGGCTTTCAATCCATTT--GA----TTCTG-CCCAATAACTTCTAAGTGACCTGATCTCACAGCCATTTTGAATGA-A------------G--------TGTTG-------TTTTTATTGT-TA-CA-ATAAATGTAT--TCCTACGCGCCATTTTAAAAA----AAAAACAACTTGAGATTAATGATGAGAGAAACTataacttctaagtgacctgatctcacagccattttgaatgaagtgttgtttttattgttacaataaatgtattcctacgcgccattttaaaaaaaaaacaacttgagattaatgatgagagaaact
gi|7 : tcactataacgtcacatcatttaatatttattatgttaattaatatctattgtcttgacgaaattacagcgaatttgaatggccaacaaattcgtttagatttcgcaatacaagtaaaacctatcgagtcgcttccaccattcccgcgacacagccacagcttacaccgaatcaccgctcagcgctggttctctCATTT--AGTCCCTCTTCTCTTC-TCCGACAATCCATCCT--AACCATT-C-ACC-TC-AATT-GTCGTCCACTC-ATT----A----TTCTGGCCCAATAACT-CT-CCTGACCTGAACGCACAGACATT---GATGT-G------------G--------T--TG-------G-------GT-TAGTATGCAAATA-ATGATCCTAAA-GCCAT---AAAAA---TAATTCAAG--T----TT--TGATGACTGAAAACATCTTGATT-AC-------TAT-TC-A-ATAAACATAATTAAATAA-A-A-AAATCAAATCGACTCGT----TCC---TAATGCGGATCT-AAG--GAG--AA---------AATTGG--AC--------GAAAA-CTTT----TCA------------------TG-AT----ACGT-T--TT-CG-C-CAA-AGGTCC----TTGCTACTGCCAAATCTAAAGAAAA
gi|8 : ---GAT-TAAAT--------AATGGCGATTTT-GATTGGCCGAAAAAATTC-GTTT-GA-TTTCTACA-T-GAAAGAAAACCT-----A-CGA-------------T------GTTC------------AC-TA-ACTAGTGAT-CAGATTCCTCTAACCCC---ACCCCCCTCAC--AAT----GCACCA--CACATCGAGTCTCCGCTTGTCCTCTT--T--TTGTATCTAATTCATCTTCCAACCATTGCACCTTTAATTTTGCAT----TCTGCTC--AATA--TCTCCTCacacatctta
gi|8 : ATC-T-----AATTCATCTTCCAACCATTGC-ACC-TTTAATTTTGC----------------A----TTCTG-CTCAATATCT-CCTCTAGACCTGAACAAACAGCGACTTGGAATGT-A------------GTT------TGTCG-------TTTTCATTGT-TA-Ctagacctgaacaaacagcgacttggaatgtagtttgtcgttttcattgttact
gi|9 : gattaaataatggcgattttgattggccgaaaaaattcgtttgatttctacatgaaagaaaacctacgatgttcactaactagtgatcagattcctctaaccccacccccctcacaatgcaccacacatcgagtctccgcttgtcctctttttgtTGTAT--TCCTACGCACCATTTCAAAAACTTAAATTAATTGTT----TT--TGATGAGAGAAACTAT-TTGTTTTAC-------TAT-CT-A-A--AACATAATAAACGGATA-AGAAATAAATCTTTTTCTT----TTT---T----TG------ATGGCG-G--AATAAAACTTCAATTGGAAACTCGGGCGGGAAAA-C----GCGT---A--------G-TGC-ATTA-ATG---AAGT-T--TTCGGTA-CAA-TTTTCAG--CTTGATGTGGCC--ATC--AAATAAAGAATAATTt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAAACCCACTGCACTCATTGCACATCGACTTAAGTATAATATATAATCATAAAAATACCAGCACTCATTGTTGATAGCAAAACAGTTCATGAGAATAACATCTTACTTTATTTGACATCGAACAGAGAAGTAAA
Unaligned ( gi|28 ): AAAACTGTTTTCTTATGCCTCAGGCTTAAGTTTTGTGAT
Unaligned ( gi|29 ): TGTTTGATCATGTAATACAGGGTCAAAATGGCACAG
Unaligned ( gi|30 ): ATTTTTTTTTTAATTATTAAAAAATTGATTAATA