lowQualScore : 11111111111111 111 777777777777777777777777777 111 111 333333333333333333333333333333 11 222 111 5555555555555555555555 1
lowQualScore : 0 777 4 99 77777777777777 4 555 999999999999999999999999999 3 77 3 3 000 3 111 888888888888888888888888888888 7 77 5 77 999 1 5 4 5 777 6666666666666666666666 1 7 2
lowQualScore : . ... . .. .............. . ... ........................... . .. . . ... . ... .............................. . .. . .. ... . . . . ... ...................... . . .
lowQualScore : 3 000 0 55 88888888888888 0 000 444444444444444444444444444 3 99 3 3 444 3 444 444444444444444444444444444444 3 99 7 77 999 7 7 9 2 333 2222222222222222222222 0 7 5
consensus : TTGTATTT---TTNAA--TCATTTGAAA------TA------AAATCA-AATTT---GGGG----G-----C--------TTTTAAAGGA-GTCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C----AC-CT--------GTATTGACCT--ACT-TTTGAC-CACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-N-CTT--T-------------------AATTGGAGTGAATTAANTGTTAGA
Reference ( gi|6 ) : TTGTATTT---TTTAA--TCATTTGAAA------TA------AAATCA-AATTT---GGGT----T-----T--------TTTTATGGGA-GTCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C----AC-CA--------GTGTTGACCT--ACT-TTTGAA-CACAGTGCAGAGCAG-ATTTGTTTGTGATCTG-CAAAGAATATGA-T-CTT--T-------------------AATTAGAGTGACTTAAGTGTTAGA
gi|10 : TTGTGTTTATTTTTAAC-TCATTTGAAA------TA------AAATCA-A------------------------------TTTTGTGGGG---CAATTAGCAAT--GA-T-A---A-T---
gi|5 : taaaaaaaaaaacaaaaaaaaccctacagtgactatctgaaagactgctttcgttTGTAATT---TTTAA--TAATTTGAAA-------A------AAATCA-AATGT---GGGG----G-----GGGGGGGGGCTTTACGGAG-CTCAATTAGCAAT--GA-C-A-----T---GGCTTGGTTTCT------------C----AC-TT--------GTATTGACCT--ACT-TTTGAC-CACAATGCAAAGCAG-TTTTGGTTGTGATCTG-CAAAGAATATGA-T-ATT--T-------------------AATTGGAGTGAATTAAG
gi|8 : tttgTGCATGT---TTAAA--TCATTTGAAA------TA------AAATCA-AATTTA--GGGG----G-----C--------TTTTA-AGTA-GTCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C----AC-
gi|17 : aaaaaaaagaagattttaatgtaaagcctacagtgacatatatcttaaagactgctttcattttgTGTAATT---TTTAA--TAATTTGAAA------TA------AAATCA-AATGT---GGGt
gi|9 : ttcattttgGCATGT---GTTAAATTCATT-GAAA------TA------AAA-CA-AATTT---AGGG----G-----C--------TTTAA--GTA-GTCCAATAGCAAT--GA-C-A---A-ggg
gi|1 : aaaaaaagtgaagatgttagatgtaaagcctacagtgacatatatcttaaggactgctcatttgTATTT---TTAAA--TCATTTGAAA------T-------AAATCAGAATTTAGGGGGC----T-----T--------TAATAATAGA-GTCCATTAGCAAT--GA-TAA---A-T---GGCTT-GTTTCT------------CA---AC-CT--------GTATTGACCTTAACT-TTTGGACCATAGTGTAGAGCA--CTTTGGTTG-GATTTG-C-AAGAACATGA-TACTT--A-------------------AATTAGAATGA-TTAACTGTT
gi|3 : ttgttaaaaaaaaataagacataatgcaataagcctacaagtgccatatcgcatgtatgctggtgttTATCT---TTAAA--TCATTTGAAA------TGACCTTTAAATAA-AAATT---AGGA----TCCAGCC--------TTTAAAATGT-GTCAATTAGCACC--TA-C-A---AGTAA-GGCTCGGTTTCT------------TTTCAAC-CAAACCACAGGTAATGACCT--ACT-TTTGAC-TACAGCACAGAGCAC-TATTGTCTGTAATCTGACAAA-AATATAA-A-CTT--T-------------------AATTAGAGTGAATTAAtggacctaatttggtaaggactatagaacctgaaaatatgtatcttaactcatttaga
gi|12 : taacaagatatattaaaagtgcttgtattttgatTATTT---TTTAA--TCATTTGAAA------TA------AAATCA-AAATT---GGG---------------------------AGA-GTCAATTAGCAAT--GA-C-A---A-T---GGCTTct
gi|2 : TATCT---TTAAA--TCATTTGAAATTACTTTG------AAATAA-AATTTA--GGGCACAGC-----C--------TTTCAAAGGA-GTCAATTAGCACC--TA-C-AAGTA-T---GGCCGAGTTTCT------------
gi|7 : agtaacaaactatattaaaaactgcttgcattttcatTCT---TTAAA--TCATTTGAAA------TA------AAATTA-AATTT---AGGG----G-----G--------CTTTAAAAGATGTCATTTAGCAAT--GACC-AAT-A-T---GGCTTGGTTTCT-----------------ACTCA--------A-ACAAACCA--CCTGTTTGAC-CACAGTGT-GAGCAC-TTTTGTCTAAAATCTG-CAAAtctcaaccaaaccacaggtaattaccttcttggaaattgacctttttatcctcataattgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaatataaattttaattggagcgaatt
gi|4 : aaatatcttaattaaagactgctttcatttttcttcGA-GTCAATTAGCAATT-GA-C-A---A-T---GGCTTGGTTTCT------------C----AC-CT--------GTATTGACCT--AA--TTTGAC-CTCAGTGCAGAGCAGTTTTTGTTTGTAATCTG-CAAATCTTATAATT-CTT--TTTGATATCTGTAATAAAAAAATTGGAGTGAATTAAGTGTTAGAat
gi|19 : aA-GTCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C----AC-TG--------GTctaaattcataggactagacctgaaaatctgcacaatttatcatttagaacaaatg
gi|11 : -GTCAAGTAGCAATATGA-C-A---A-TTATGGTTGGGTTTCTTCTCAAGCAAACC----AC-CT--------GTTTTGGCCT--ACT-TTTGAa
gi|13 : atgatTTTCT------------C----AC-CT--------GTATTGACCT--ACT-TTTGAC-CATAGTGCAGAGCAG-
gi|15 : atcatacatgtgataaTTGTTTGTGATTTA-CCAAAAATATGA-A-CTTTAT-------------------AATTGGAGTGAATTAAt
gi|18 : aTTGTGATCTG-CCAAGAATATCA-A-CTT--T-------------------AATTGGAGTGATTTAACTGTTccgt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AACAATAAGATTTCAATGAAAAGCCACAGTGAAACTATCTCAAAGATTGCTTTC
Unaligned ( gi|16 ): AAAGAGAAGATTTAATGAAAGCCTACGGTACATATATCTTAAATACTTGCT
Alignments
lowQualScore : 111111 111111 1 33333333333333333333333333 111 333333333333 11 11 4444444444444444444444
lowQualScore : 1 3 000000 000000 3 0 3 66666666666666666666666666 3 77 3 3 999 3 000 777777777777 4 0 66 5 5 00 0 5 3 3 22 6666666666666666666666 1
lowQualScore : . . ...... ...... . . . .......................... . .. . . ... . ... ............ . . .. . . .. . . . . .. ...................... .
lowQualScore : 0 6 555555 555555 6 9 6 00000000000000000000000000 1 33 1 1 666 1 444 333333333333 0 9 99 0 0 00 4 0 1 0 44 9999999999999999999999 0
consensus : TTGTATTTTTAAAT-CATTTGAAA------TAA------AATCA-AATTT-G-GGG----G---------CTTT--TAAAG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-NCTT--T-------------------AATTGGAGTGAATTAACTGTTAGA
Reference ( family-1173 ) : TTGTATTTTTNAAT-CATTTGAAA------TAA------AATCA-AATTT-G-GGG----G---------CTTT--TAAAG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-NCTT--T-------------------AATTGGAGTGAATTAANTGTTAGA
gi|1 : TATTTTTAAAT-CATTTGAAA------T-A------AATCAGAATTTAG-GGG----G---------CTTTAATAATA-GAG-TCCATTAGCAAT--GA-TAA---A-T---GGCTT-GTTTCT------------CAACCTGTATTGACCTTAACT-TTTGGACCATAGTGTAGAGCA--CTTTGGTTG-GATTTG-C-AAGAACATGATACTT--A-------------------AATTAGAATG-ATTAACTGTT
gi|10 : ttgttaaaaaaaaataagacataatgcaataagcctacaagtgccatatcgcatgtatgctggtgttTATTTTTAACT-CATTTGAAA------TAA------AATCA-ATTTT-GTGGG----G---------C-----------------AATTAGCAAT--GA-T-A---A-T---tggacctaatttggtaaggactatagaacctgaaaatatgtatcttaactcatttaga
gi|11 : taaaaaaaaaaacaaaaaaaaccctacagtgactatctgaaagactgctttcgttttgtgttG-TCAAGTAGCAATATGA-C-A---A-TTATGGTTGGGTTTCTTCTCAAGCAAACC-ACCTGTTTTGGCCT--ACT-TTT-GA
gi|12 : atgatTATTTTTTAAT-CATTTGAAA------TAA------AATCA-AAATT-G-GG-------------------------A-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTT
gi|13 : TTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCATAGTGCAGAGCAG-T
gi|15 : atcatacatgtgataaTTGTTTGTGATTTA-CCAAAAATATGA-ACTTTAT-------------------AATTGGAGTGAATTAACCGT
gi|17 : aTGTAATTTTTAAT-AATTTGAAA------TAA------AATCA-AATGT-G-GGG----G---------
gi|18 : ttcattttgTTGTGATCTG-CCAAGAATATCA-ACTT--T-------------------AATTGGAGTGATTTAACTGTTg
gi|19 : cAG-TCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C-ACTGGTA
gi|2 : TATCTTTAAAT-CATTTGAAATTACTTTGA------AATAA-AATTT-A-GGGCACAGC--------CTTT--CAAAG-GAG-TCAATTAGCACC--TA-C-AAGTA-T---GGCCGAGTTTCT------------
gi|3 : agtaacaaactatattaaaaactgcttgcattttcatTATCTTTAAAT-CATTTGAAA------TGACCTTTAAATAA-AAATT-A-GGATCCAG---------CCTT--TAAAATGTG-TCAATTAGCACC--TA-C-A---AGTAA-GGCTCGGTTTCTTTTCAACCAAACC-ACAGGTAATGACCT--ACT-TTT-GACTACAGCACAGAGCAC-TATTGTCTGTAATCTGACAAA-AATATAA-ACTT--T-------------------AATTAGAGTGAATTAACtctcaaccaaaccacaggtaattaccttcttggaaattgacctttttatcctcataattgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaatataaattttaattggagcgaatt
gi|4 : taacaagatatattaaaagtgcttgtattttgat-GAG-TCAATTAGCAATT-GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--AA--TTT-GACCTCAGTGCAGAGCAGTTTTTGTTTGTAATCTG-CAAATCTTATAATTCTT--TTTGATATCTGTAATAAAAAAATTGGAGTGAATTAAGTGTTAGA
gi|5 : aTGTAATTTTTAAT-AATTTGAAA-------AA------AATCA-AATGT-G-GGG----GGGGGGGGGGCTTT----ACG-GAGCTCAATTAGCAAT--GA-C-A-----T---GGCTTGGTTTCT------------C-ACTTGTATTGACCT--ACT-TTT-GACCACAATGCAAAGCAG-TTTTGGTTGTGATCTG-CAAAGAATATGA-TATT--T-------------------AATTGGAGTGAATTAActaaattcataggactagacctgaaaatctgcacaatttatcatttagaacaaatg
gi|6 : tttgTTGTATTTTTTAAT-CATTTGAAA------TAA------AATCA-AATTT-G-GGT----T---------TTTT--TATGG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCAGTGTTGACCT--ACT-TTT-GAACACAGTGCAGAGCAG-ATTTGTTTGTGATCTG-CAAAGAATATGA-TCTT--T-------------------AATTAGAGTGACTTAAGTGTTAGAg
gi|7 : TCTTTAAAT-CATTTGAAA------TAA------AATTA-AATTTAG-GGG----G---------CTTT--AAAAG-ATG-TCATTTAGCAAT--GACC-AAT-A-T---GGCTTGGTTTCT--------------ACTCAAACAAACCA--CCTGTTT-GACCACAGTGT-GAGCAC-TTTTGTCTAAAATCTG-CAAA
gi|8 : aaatatcttaattaaagactgctttcatttttcttcTGCATGTTTAAAT-CATTTGAAA------TAA------AATCA-AATTTAG-GGG----G---------CTTT--T-AAG-TAG-TCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C-ACat
gi|9 : aaaaaaaagaagattttaatgtaaagcctacagtgacatatatcttaaagactgctttcattttgTTAAATTCATT-GAAA------TAA------AA-CA-AATTT-A-GGG----G---------CTTT----AAG-TAG-TCCAATAGCAAT--GA-C-A---A-t
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACAATAAGATTTCAATGAAAAGCCACAGTGAAACTATCTCAAAGATTGCTTTC
Unaligned ( gi|16 ): AAAGAGAAGATTTAATGAAAGCCTACGGTACATATATCTTAAATACTTGCT
Alignments
lowQualScore : 11111111111 111111 1 3333333333333333333333333333333 111 333333333333 11 11 4444444444444444444444
lowQualScore : 0 3 77777777777 000000 3 0 3 2222222222222222222222222222222 3 77 3 3 999 3 000 777777777777 4 0 66 5 5 00 0 5 3 3 22 6666666666666666666666
lowQualScore : . . ........... ...... . . . ............................... . .. . . ... . ... ............ . . .. . . .. . . . . .. ......................
lowQualScore : 5 6 33333333333 555555 6 9 6 9999999999999999999999999999999 1 33 1 1 666 1 444 333333333333 0 9 99 0 0 00 4 0 1 0 44 9999999999999999999999
consensus : TTGTATTTTTAAAT-CATTTG-----------AAATAA------AATCA-AATTT-G-GG----G----G---------CTTT--TAAAG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-NCTT--T-------------------AATTGGAGTGAATTAACTGTTAGA
Reference ( family-1173 ) : TTGTATTTTTAAAT-CATTTG-----------AAATAA------AATCA-AATTT-G-GG----G----G---------CTTT--TAAAG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-NCTT--T-------------------AATTGGAGTGAATTAACTGTTAGA
gi|1 : TATTTTTAAAT-CATTTG-----------AAAT-A------AATCAGAATTTAG-GG----G----G---------CTTTAATAATA-GAG-TCCATTAGCAAT--GA-TAA---A-T---GGCTT-GTTTCT------------CAACCTGTATTGACCTTAACT-TTTGGACCATAGTGTAGAGCA--CTTTGGTTG-GATTTG-C-AAGAACATGATACTT--A-------------------AATTAGAATG-ATTAACTGTT
gi|10 : ttgttaaaaaaaaataagacataatgcaataagcctacaagtgccatatcgcatgtatgctggtgttTATTTTTAACT-CATTTG-----------AAATAA------AATCA-ATTTT-GTGG----G----G---------C-----------------AATTAGCAAT--GA-T-A---A-T---tggacctaatttggtaaggactatagaacctgaaaatatgtatcttaactcatttaga
gi|11 : taaaaaaaaaaacaaaaaaaaccctacagtgactatctgaaagactgctttcgttttgtgttG-TCAAGTAGCAATATGA-C-A---A-TTATGGTTGGGTTTCTTCTCAAGCAAACC-ACCTGTTTTGGCCT--ACT-TTT-GA
gi|12 : atgatTATTTTTTAAT-CATTTG-----------AAATAA------AATCA-AAATT-G-GG-----------------------------A-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTT
gi|13 : TTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCATAGTGCAGAGCAG-T
gi|15 : atcatacatgtgataaTTGTTTGTGATTTA-CCAAAAATATGA-ACTTTAT-------------------AATTGGAGTGAATTAACCGT
gi|17 : aTGTAATTTTTAAT-AATTTG-----------AAATAA------AATCA-AATGT-G-GG----G----G---------
gi|18 : ttcattttgTTGTGATCTG-CCAAGAATATCA-ACTT--T-------------------AATTGGAGTGATTTAACTGTTg
gi|19 : cAG-TCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C-ACTGGTA
gi|2 : TATCTTTAAAT-CATTTGAAATTACTTTGAAATAA------AAT-----TTA-G-GGCACAG----C---------CTTT--CAAAG-GAG-TCAATTAGCACC--TA-C-AAGTA-T---GGCCGAGTTTCT------------
gi|3 : agtaacaaactatattaaaaactgcttgcattttcatTATCTTTAAAT-CATTTG-----------AAATGACCTTTAAATAA-AAATT-A-GG----ATCCAG---------CCTT--TAAAATGTG-TCAATTAGCACC--TA-C-A---AGTAA-GGCTCGGTTTCTTTTCAACCAAACC-ACAGGTAATGACCT--ACT-TTT-GACTACAGCACAGAGCAC-TATTGTCTGTAATCTGACAAA-AATATAA-ACTT--T-------------------AATTAGAGTGAATTAACTtctcaaccaaaccacaggtaattaccttcttggaaattgacctttttatcctcataattgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaatataaattttaattggagcgaatt
gi|4 : taacaagatatattaaaagtgcttgtattttgat-GAG-TCAATTAGCAATT-GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--AA--TTT-GACCTCAGTGCAGAGCAGTTTTTGTTTGTAATCTG-CAAATCTTATAATTCTT--TTTGATATCTGTAATAAAAAAATTGGAGTGAATTAAGTGTTAGA
gi|5 : aTGTAATTTTTAAT-AATTTG-----------AAA-AA------AATCA-AATGT-G-GG----G----GGGGGGGGGGCTTT----ACG-GAGCTCAATTAGCAAT--GA-C-A-----T---GGCTTGGTTTCT------------C-ACTTGTATTGACCT--ACT-TTT-GACCACAATGCAAAGCAG-TTTTGGTTGTGATCTG-CAAAGAATATGA-TATT--T-------------------AATTGGAGTGAATTAActaaattcataggactagacctgaaaatctgcacaatttatcatttagaacaaatg
gi|6 : tttgTTGTATTTTTTAAT-CATTTG-----------AAATAA------AATCA-AATTT-G-GG----T----T---------TTTT--TATGG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCAGTGTTGACCT--ACT-TTT-GAACACAGTGCAGAGCAG-ATTTGTTTGTGATCTG-CAAAGAATATGA-TCTT--T-------------------AATTAGAGTGACTTAAGTGTTAGAg
gi|7 : TCTTTAAAT-CATTTG-----------AAATAA------AATTA-AATTTAG-GG----G----G---------CTTT--AAAAG-ATG-TCATTTAGCAAT--GACC-AAT-A-T---GGCTTGGTTTCT--------------ACTCAAACAAACCA--CCTGTTT-GACCACAGTGT-GAGCAC-TTTTGTCTAAAATCTG-CAAA
gi|8 : aaatatcttaattaaagactgctttcatttttcttcTGCATGTTTAAAT-CATTTG-----------AAATAA------AATCA-AATTTAG-GG----G----G---------CTTT--T-AAG-TAG-TCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C-ACat
gi|9 : aaaaaaaagaagattttaatgtaaagcctacagtgacatatatcttaaagactgctttcattttgTTAAATTCATT-G-----------AAATAA------AA-CA-AATTT-A-GG----G----G---------CTTT----AAG-TAG-TCCAATAGCAAT--GA-C-A---A-t
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACAATAAGATTTCAATGAAAAGCCACAGTGAAACTATCTCAAAGATTGCTTTC
Unaligned ( gi|16 ): AAAGAGAAGATTTAATGAAAGCCTACGGTACATATATCTTAAATACTTGCT
Alignments
lowQualScore : 11111111111 111111 1 3333333333333333333333333333333 111 333333333333 11 11 4444444444444444444444
lowQualScore : 0 3 77777777777 000000 3 0 3 2222222222222222222222222222222 3 77 3 3 999 3 000 777777777777 4 0 66 5 5 00 0 5 3 3 22 6666666666666666666666
lowQualScore : . . ........... ...... . . . ............................... . .. . . ... . ... ............ . . .. . . .. . . . . .. ......................
lowQualScore : 5 6 33333333333 555555 6 9 6 9999999999999999999999999999999 1 33 1 1 666 1 444 333333333333 0 9 99 0 0 00 4 0 1 0 44 9999999999999999999999
consensus : TTGTATTTTTAAAT-CATTTG-----------AAATAA------AATCA-AATTT-G-GG----G----G---------CTTT--TAAAG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-NCTT--T-------------------AATTGGAGTGAATTAACTGTTAGA
Reference ( family-1173 ) : TTGTATTTTTAAAT-CATTTG-----------AAATAA------AATCA-AATTT-G-GG----G----G---------CTTT--TAAAG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-NCTT--T-------------------AATTGGAGTGAATTAACTGTTAGA
gi|1 : TATTTTTAAAT-CATTTG-----------AAAT-A------AATCAGAATTTAG-GG----G----G---------CTTTAATAATA-GAG-TCCATTAGCAAT--GA-TAA---A-T---GGCTT-GTTTCT------------CAACCTGTATTGACCTTAACT-TTTGGACCATAGTGTAGAGCA--CTTTGGTTG-GATTTG-C-AAGAACATGATACTT--A-------------------AATTAGAATG-ATTAACTGTT
gi|10 : ttgttaaaaaaaaataagacataatgcaataagcctacaagtgccatatcgcatgtatgctggtgttTATTTTTAACT-CATTTG-----------AAATAA------AATCA-ATTTT-GTGG----G----G---------C-----------------AATTAGCAAT--GA-T-A---A-T---tggacctaatttggtaaggactatagaacctgaaaatatgtatcttaactcatttaga
gi|11 : taaaaaaaaaaacaaaaaaaaccctacagtgactatctgaaagactgctttcgttttgtgttG-TCAAGTAGCAATATGA-C-A---A-TTATGGTTGGGTTTCTTCTCAAGCAAACC-ACCTGTTTTGGCCT--ACT-TTT-GA
gi|12 : atgatTATTTTTTAAT-CATTTG-----------AAATAA------AATCA-AAATT-G-GG-----------------------------A-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTT
gi|13 : TTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCATAGTGCAGAGCAG-T
gi|15 : atcatacatgtgataaTTGTTTGTGATTTA-CCAAAAATATGA-ACTTTAT-------------------AATTGGAGTGAATTAACCGT
gi|17 : aTGTAATTTTTAAT-AATTTG-----------AAATAA------AATCA-AATGT-G-GG----G----G---------
gi|18 : ttcattttgTTGTGATCTG-CCAAGAATATCA-ACTT--T-------------------AATTGGAGTGATTTAACTGTTg
gi|19 : cAG-TCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C-ACTGGTA
gi|2 : TATCTTTAAAT-CATTTGAAATTACTTTGAAATAA------AAT-----TTA-G-GGCACAG----C---------CTTT--CAAAG-GAG-TCAATTAGCACC--TA-C-AAGTA-T---GGCCGAGTTTCT------------
gi|3 : agtaacaaactatattaaaaactgcttgcattttcatTATCTTTAAAT-CATTTG-----------AAATGACCTTTAAATAA-AAATT-A-GG----ATCCAG---------CCTT--TAAAATGTG-TCAATTAGCACC--TA-C-A---AGTAA-GGCTCGGTTTCTTTTCAACCAAACC-ACAGGTAATGACCT--ACT-TTT-GACTACAGCACAGAGCAC-TATTGTCTGTAATCTGACAAA-AATATAA-ACTT--T-------------------AATTAGAGTGAATTAACTtctcaaccaaaccacaggtaattaccttcttggaaattgacctttttatcctcataattgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaatataaattttaattggagcgaatt
gi|4 : taacaagatatattaaaagtgcttgtattttgat-GAG-TCAATTAGCAATT-GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--AA--TTT-GACCTCAGTGCAGAGCAGTTTTTGTTTGTAATCTG-CAAATCTTATAATTCTT--TTTGATATCTGTAATAAAAAAATTGGAGTGAATTAAGTGTTAGA
gi|5 : aTGTAATTTTTAAT-AATTTG-----------AAA-AA------AATCA-AATGT-G-GG----G----GGGGGGGGGGCTTT----ACG-GAGCTCAATTAGCAAT--GA-C-A-----T---GGCTTGGTTTCT------------C-ACTTGTATTGACCT--ACT-TTT-GACCACAATGCAAAGCAG-TTTTGGTTGTGATCTG-CAAAGAATATGA-TATT--T-------------------AATTGGAGTGAATTAActaaattcataggactagacctgaaaatctgcacaatttatcatttagaacaaatg
gi|6 : tttgTTGTATTTTTTAAT-CATTTG-----------AAATAA------AATCA-AATTT-G-GG----T----T---------TTTT--TATGG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCAGTGTTGACCT--ACT-TTT-GAACACAGTGCAGAGCAG-ATTTGTTTGTGATCTG-CAAAGAATATGA-TCTT--T-------------------AATTAGAGTGACTTAAGTGTTAGAg
gi|7 : TCTTTAAAT-CATTTG-----------AAATAA------AATTA-AATTTAG-GG----G----G---------CTTT--AAAAG-ATG-TCATTTAGCAAT--GACC-AAT-A-T---GGCTTGGTTTCT--------------ACTCAAACAAACCA--CCTGTTT-GACCACAGTGT-GAGCAC-TTTTGTCTAAAATCTG-CAAA
gi|8 : aaatatcttaattaaagactgctttcatttttcttcTGCATGTTTAAAT-CATTTG-----------AAATAA------AATCA-AATTTAG-GG----G----G---------CTTT--T-AAG-TAG-TCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C-ACat
gi|9 : aaaaaaaagaagattttaatgtaaagcctacagtgacatatatcttaaagactgctttcattttgTTAAATTCATT-G-----------AAATAA------AA-CA-AATTT-A-GG----G----G---------CTTT----AAG-TAG-TCCAATAGCAAT--GA-C-A---A-t
blockSeqs : T AAATTACTTTG CCTTTA . A T GGGGGGGGGGGCTTTACG C AT C . AGT G TAT TCTCAAGCAAAC . . G . GT A C A TT TTTGATATCTGTAATAAAAA
blockSeqs : . . . . A . ATCCAGCCTTTAAAAT . T . . AT . AA TTTCAACCAAAC . . . . G . C G A TAT
blockSeqs : . . . . . . CACAGCCTTTCAAAG . . . . . . . . . . . . C . A T A T
blockSeqs : . . . . . . TTTTTTTATGG . . . . . . . . . . . . G . A G A T
blockSeqs : . . . . . . GGCTTTAAAAG . . . . . . . . . . . . G . A G T T
blockSeqs : . . . . . . GGCTTTTAAG . . . . . . . . . . . . C . A . T T
blockSeqs : . . . . . . GGCTTTAAG . . . . . . . . . . . . . A
blockSeqs : . . . . . . GGC . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : GGCTTTNAG********************** ** G* A*
originalCons : TTGTATTTTTAAAT-CATTTG-----------AAATAA------AATCA-AATTT-G-GG----G----G---------CTTT--TAAAG-GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-NCTT--T-------------------AATTGGAGTGAATTAACTGTTAGA
finalCons : TTGTATTTTTAAAT-CATTTG-----------AAATAA------AATCA-AATTT-G-GGGGCTTTNAG----------------------GAG-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGAA-CTT--T-------------------AATTGGAGTGAATTAACTGTTAGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACAATAAGATTTCAATGAAAAGCCACAGTGAAACTATCTCAAAGATTGCTTTC
Unaligned ( gi|16 ): AAAGAGAAGATTTAATGAAAGCCTACGGTACATATATCTTAAATACTTGCT
Alignments
lowQualScore : 111111 111111 1 4444444444444444444444444444444444 111 333333333333 11 3333333333333333333333
lowQualScore : 0 3 000000 000000 3 0 3 2222222222222222222222222222222222 3 77 3 3 999 3 000 777777777777 4 0 66 5 5 00 0 5 3 3 3 9999 9999999999999999999999
lowQualScore : . . ...... ...... . . . .................................. . .. . . ... . ... ............ . . .. . . .. . . . . . .... ......................
lowQualScore : 5 6 555555 555555 6 9 6 3333333333333333333333333333333333 1 33 1 1 666 1 444 333333333333 0 9 99 0 0 00 4 0 1 0 4 4444 9999999999999999999999
consensus : TTGTATTTTTAAAT-CATTTGAAA------TAA------AATCA-AATTT-G-GGG----G---------CTTT---AA----GG-A---G-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-A--CTT--T-------------------AATTGGAGTGAATTAACTGTTAGA
Reference ( family-1173 ) : TTGTATTTTTAAAT-CATTTGAAA------TAA------AATCA-AATTT-G-GGG----G---------CTTT---NA----GG-A---G-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCACAGTGCAGAGCAG-TTTTGTTTGTGATCTG-CAAAGAATATGA-A--CTT--T-------------------AATTGGAGTGAATTAACTGTTAGA
gi|1 : TATTTTTAAAT-CATTTGAAA------T-A------AATCAGAATTTAG-GGG----G---------CTTT---AATAATAG-A---G-TCCATTAGCAAT--GA-TAA---A-T---GGCTT-GTTTCT------------CAACCTGTATTGACCTTAACT-TTTGGACCATAGTGTAGAGCA--CTTTGGTTG-GATTTG-C-AAGAACATGATA--CTT--A-------------------AATTAGAATG-ATTAACTGTT
gi|10 : ttgttaaaaaaaaataagacataatgcaataagcctacaagtgccatatcgcatgtatgctggtgttTATTTTTAACT-CATTTGAAA------TAA------AATCA-ATTTT-GTGGG----G--------------------------------CAATTAGCAAT--GA-T-A---A-T---tggacctaatttggtaaggactatagaacctgaaaatatgtatcttaactcatttaga
gi|11 : taaaaaaaaaaacaaaaaaaaccctacagtgactatctgaaagactgctttcgttttgtgtt---G-TCAAGTAGCAATATGA-C-A---A-TTATGGTTGGGTTTCTTCTCAAGCAAACC-ACCTGTTTTGGCCT--ACT-TTT-GA
gi|12 : atgatTATTTTTTAAT-CATTTGAAA------TAA------AATCA-AAATT-G-GG----------------------------AG-A---G-TCAATTAGCAAT--GA-C-A---A-T---GGCTT
gi|13 : TTTCT------------C-ACCTGTATTGACCT--ACT-TTT-GACCATAGTGCAGAGCAG-T
gi|15 : atcatacatgtgataaTTGTTTGTGATTTA-CCAAAAATATGA-A--CTTTAT-------------------AATTGGAGTGAATTAACCGT
gi|17 : aTGTAATTTTTAAT-AATTTGAAA------TAA------AATCA-AATGT-G-GGG----G---------
gi|18 : ttcattttgTTGTGATCTG-CCAAGAATATCA-A--CTT--T-------------------AATTGGAGTGATTTAACTGTTg
gi|19 : c-A---G-TCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C-ACTGGTA
gi|2 : TATCTTTAAAT-CATTTGAAATTACTTTGA------AATAA-AATTT-A-GGGCACAG---------CCTTTCAAA----GG-A---G-TCAATTAGCACC--TA-C-AAGTA-T---GGCCGAGTTTCT------------
gi|2 : agtaacaaactatattaaaaactgcttgcattttcatAATATAA-A--TTT--T-------------------AATTGGAGCGAATTtctcaaccaaaccacaggtaattaccttcttggaaattgacctttttatcctcataattgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaatataaattttaattggagcgaatt
gi|3 : agtaacaaactatattaaaaactgcttgcattttcattatctttaaatcatttgaaattactttgaaataaaatttagggcacagcctttcaaaggagtcaattagcacctacaagtatggccgagtttcttctcaaccaaaccacaggtaattaccttcttggaaattgacctttttatcctcataattgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataTATCTTTAAAT-CATTTGAAA------TGACCTTTAAATAA-AAATT-A-GGATCCAG---------CCTT---TA----AA-ATGTG-TCAATTAGCACC--TA-C-A---AGTAA-GGCTCGGTTTCTTTTCAACCAAACC-ACAGGTAATGACCT--ACT-TTT-GACTACAGCACAGAGCAC-TATTGTCTGTAATCTGACAAA-AATATAA-A--CTT--T-------------------AATTAGAGTGAATTAACT
gi|4 : taacaagatatattaaaagtgcttgtattttgatG-A---G-TCAATTAGCAATT-GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCTGTATTGACCT--AA--TTT-GACCTCAGTGCAGAGCAGTTTTTGTTTGTAATCTG-CAAATCTTAT-A-ATTCTT--TTTGATATCTGTAATAAAAAAATTGGAGTGAATTAAGTGTTAGA
gi|5 : aTGTAATTTTTAAT-AATTTGAAA-------AA------AATCA-AATGT-G-GGG----GGGGGGGGGGCTTT---AC----GG-A---GCTCAATTAGCAAT--GA-C-A-----T---GGCTTGGTTTCT------------C-ACTTGTATTGACCT--ACT-TTT-GACCACAATGCAAAGCAG-TTTTGGTTGTGATCTG-CAAAGAATATGA-T--ATT--T-------------------AATTGGAGTGAATTAActaaattcataggactagacctgaaaatctgcacaatttatcatttagaacaaatg
gi|6 : tttgTTGTATTTTTTAAT-CATTTGAAA------TAA------AATCA-AATTT-G-GGT----T---------TTTT---TATG--GG-A---G-TCAATTAGCAAT--GA-C-A---A-T---GGCTTGGTTTCT------------C-ACCAGTGTTGACCT--ACT-TTT-GAACACAGTGCAGAGCAG-ATTTGTTTGTGATCTG-CAAAGAATATGA-T--CTT--T-------------------AATTAGAGTGACTTAAGTGTTAGAg
gi|7 : TCTTTAAAT-CATTTGAAA------TAA------AATTA-AATTTAG-GGG----G---------CTTTA--AA----AG-AT--G-TCATTTAGCAAT--GACC-AAT-A-T---GGCTTGGTTTCT--------------ACTCAAACAAACCA--CCTGTTT-GACCACAGTGT-GAGCAC-TTTTGTCTAAAATCTG-CAAA
gi|8 : aaatatcttaattaaagactgctttcatttttcttcTGCATGTTTAAAT-CATTTGAAA------TAA------AATCA-AATTTAG-GGG----G---------CTTT---TA----AGTA---G-TCAATTAGCAAT--GA-T-A---A-T---GGCTTGATTTCT------------C-ACat
gi|9 : aaaaaaaagaagattttaatgtaaagcctacagtgacatatatcttaaagactgctttcattttgTTAAATTCATT-GAAA------TAA------AA-CA-AATTT-A-GGG----G---------CTTT---AA----GT-A---G-TCCAATAGCAAT--GA-C-A---A-t
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACAATAAGATTTCAATGAAAAGCCACAGTGAAACTATCTCAAAGATTGCTTTC
Unaligned ( gi|16 ): AAAGAGAAGATTTAATGAAAGCCTACGGTACATATATCTTAAATACTTGCT