lowQualScore : 2222
lowQualScore : 3 5555 4 4 55 6 6
lowQualScore : . .... . . .. . .
lowQualScore : 2 7777 0 0 55 0 0
consensus : CAGNTGC-AAAA-CAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGTACAA
Reference ( gi|20 ) : CAGTTGC-TACA-CAA-TATG--CCCCCTCTTTTTCAAAAGGGGAGGGGGGGGGGGCATAAAC
gi|24 : CAGTTGC--AAA-AAA-TAT----CCCCTCTTTTTCAAAAGGGG
gi|31 : CAGTTGC-AAAA-CAA-TATG--CCCCCTCTTTTTCAgcat
gi|25 : CAGGTGCATAAA-CCACTATG--CCCCCTCTTTTTCAAAGGGG
gi|26 : AGGTGC--AAA-CAA-TATG--CCCCCTCTTTTTAAAAAGGGGGG
gi|5 : AGTAGC-TGCAATAA-TGTGTACCTCTCCTTTTTCA----GGGAGGGGGGGGGGGTACAA
gi|27 : atAGATGC-AAAA-CAA-TATG--CCCCCTCTTTT-CAAAGAGGGctccataggtcctccataatggggcagaggggggagggattccctccggtaacaatcccgagtat
gi|29 : AGTTGC-AAAA-CAA-TATG--CCCCCTC-TTTTCAAAca
gi|28 : AGGTGC-AAAG-CAA-TATG---CCCCTCTTCTTTGAAAGGGGAgagcg
gi|23 : TGC-AAAA-CAA-TGT-----CCCTCTTTTTCAAAAGGGGGGGGGG
gi|30 : ggA-CAA-TATG--CCCC-TCTTTTTCAAAAGGGG
20 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TTACATGTAGCTGCAATAATGTTGCCCTCTCCCCCTTTTTTATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAA
Unaligned ( gi|2 ): TAATTTAGCTGCAATAATAGTACCTCTGCTCTCCTTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTG
Unaligned ( gi|3 ): AATAGCTGCAATAATGTAGCCCCTCCCTTTGGGGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|4 ): ACAATTAGATGCAGCAATGTAGCCATCACTTTTTTCGGGAGGTGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|6 ): AGTAGCTGGCAATAATGTAGCCCTCCCCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|7 ): AAGTAGCCTGCAATAATGTAGCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|8 ): TTAGCTGCAATAATGTAGCCCTTTCCTTTGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|9 ): TTAGGTGCAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|10 ): TAGCTGCAATTAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): GCTGCAATAAGTAGCCGCTCTCCCGTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT
Unaligned ( gi|12 ): TGCTAGCTGCAATCAGTAGTCCTTCGCCTCTGGGGGTTAGGGTATACAATTCCATGGCTCCGTAAGGGATGTGATTCACTCCTTCGCCAACCCACAATTTCGATTATTTTA
Unaligned ( gi|13 ): AGCAGCAATAATGTAGCCCTGTAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|14 ): CTTAGATAACGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGACAATTTCGATTATT
Unaligned ( gi|15 ): GCAACAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|16 ): GTAGCTGCAATCATGTAGTCCTCGCCTCTGGGGGTAGGGTTACAATTCCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|17 ): TTGTTGCAATAATGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): GGGTGGGGGGTGGTATACAACTCATTTGGACTTCCGTAACGGTGCAGTAAGTTAGGCGCTCGTGATTAACTTCCGCAACATGTTCGATAA
Unaligned ( gi|19 ): GGGTAACAACTCCATAGGATCTCCGTTTATGGTTGACAGGCAGATGGCGGGGAATGACTACAATCTTCCAGATT
Unaligned ( gi|21 ): TTTTGGGGGAGGGGGGGGGGCTAACAACTCCATAGGATTCTCATTAATG
Unaligned ( gi|22 ): TAGCTGCAATAATGTTAGCCCTCTCCCCCCTTTTTTTGGGGTGGGGGGT
Alignments
lowQualScore : 1111
lowQualScore : 1 3 3 888 0000
lowQualScore : . . . ... ....
lowQualScore : 0 6 6 666 0000
consensus : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGCACAA
Reference ( family-11606 ) : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGTACAA
gi|20 : CAGTTGCT-ACACAA-TATG--CCCCCTCTTTTTCAAAAGGGGAGGGGGGGGGGGCATAA
gi|23 : GGTGCA-AAACAA-TGT-----CCCTCTTTTTCAAAAGGGGGGGGGGac
gi|24 : CAGTTGCA-AAA-AA-TAT----CCCCTCTTTTTCAAAAGGGGG
gi|25 : CAGGTGCATAAACCACTATG--CCCCCTCTTTTTCAAAGGGGcat
gi|26 : AGGTGCA-AA-CAA-TATG--CCCCCTCTTTTTAAAAAGGGGGG
gi|27 : AGATGCA-AAACAA-TATG--CCCCCTCTTTT-CAAAGAGGG
gi|28 : AGGTGCA-AAGCAA-TATG---CCCCTCTTCTTTGAAAGGGGca
gi|29 : AGTTGCA-AAACAA-TATG--CCCCCTC-TTTTCAAAa
gi|30 : GCA-AAACAA-TATG---CCCCTCTTTTTCAAAAGGGGgagcg
gi|31 : CAGTTGCA-AAACAA-TATG--CCCCCTCTTTTTCAcat
gi|5 : AGCTGCA-A--TAA-TGTGTACCTCTCCTTTTTCAGGGAGGGGGGG----GGGGTACAA
20 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTACATGTAGCTGCAATAATGTTGCCCTCTCCCCCTTTTTTATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAA
Unaligned ( gi|2 ): TAATTTAGCTGCAATAATAGTACCTCTGCTCTCCTTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTG
Unaligned ( gi|3 ): AATAGCTGCAATAATGTAGCCCCTCCCTTTGGGGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|4 ): ACAATTAGATGCAGCAATGTAGCCATCACTTTTTTCGGGAGGTGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|6 ): AGTAGCTGGCAATAATGTAGCCCTCCCCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|7 ): AAGTAGCCTGCAATAATGTAGCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|8 ): TTAGCTGCAATAATGTAGCCCTTTCCTTTGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|9 ): TTAGGTGCAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|10 ): TAGCTGCAATTAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): GCTGCAATAAGTAGCCGCTCTCCCGTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT
Unaligned ( gi|12 ): TGCTAGCTGCAATCAGTAGTCCTTCGCCTCTGGGGGTTAGGGTATACAATTCCATGGCTCCGTAAGGGATGTGATTCACTCCTTCGCCAACCCACAATTTCGATTATTTTA
Unaligned ( gi|13 ): AGCAGCAATAATGTAGCCCTGTAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|14 ): CTTAGATAACGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGACAATTTCGATTATT
Unaligned ( gi|15 ): GCAACAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|16 ): GTAGCTGCAATCATGTAGTCCTCGCCTCTGGGGGTAGGGTTACAATTCCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|17 ): TTGTTGCAATAATGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): GGGTGGGGGGTGGTATACAACTCATTTGGACTTCCGTAACGGTGCAGTAAGTTAGGCGCTCGTGATTAACTTCCGCAACATGTTCGATAA
Unaligned ( gi|19 ): GGGTAACAACTCCATAGGATCTCCGTTTATGGTTGACAGGCAGATGGCGGGGAATGACTACAATCTTCCAGATT
Unaligned ( gi|21 ): TTTTGGGGGAGGGGGGGGGGCTAACAACTCCATAGGATTCTCATTAATG
Unaligned ( gi|22 ): TAGCTGCAATAATGTTAGCCCTCTCCCCCCTTTTTTTGGGGTGGGGGGT
Alignments
lowQualScore : 1 3 3 888 6
lowQualScore : . . . ... .
lowQualScore : 0 6 6 666 0
consensus : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGCATAA
Reference ( family-11606 ) : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGCACAA
gi|20 : CAGTTGCT-ACACAA-TATG--CCCCCTCTTTTTCAAAAGGGGAGGGGGGGGGGGCATAA
gi|23 : GGTGCA-AAACAA-TGT-----CCCTCTTTTTCAAAAGGGGGGGGGGac
gi|24 : CAGTTGCA-AAA-AA-TAT----CCCCTCTTTTTCAAAAGGGGG
gi|25 : CAGGTGCATAAACCACTATG--CCCCCTCTTTTTCAAAGGGGcat
gi|26 : AGGTGCA-AA-CAA-TATG--CCCCCTCTTTTTAAAAAGGGGGG
gi|27 : AGATGCA-AAACAA-TATG--CCCCCTCTTTT-CAAAGAGGG
gi|28 : AGGTGCA-AAGCAA-TATG---CCCCTCTTCTTTGAAAGGGGca
gi|29 : AGTTGCA-AAACAA-TATG--CCCCCTC-TTTTCAAAa
gi|30 : GCA-AAACAA-TATG---CCCCTCTTTTTCAAAAGGGGgagcg
gi|31 : CAGTTGCA-AAACAA-TATG--CCCCCTCTTTTTCAcat
gi|5 : AGCTGCA-A--TAA-TGTGTACCTCTCCTTTTTCAGGGAGGGGGGGGGGG
20 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTACATGTAGCTGCAATAATGTTGCCCTCTCCCCCTTTTTTATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAA
Unaligned ( gi|2 ): TAATTTAGCTGCAATAATAGTACCTCTGCTCTCCTTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTG
Unaligned ( gi|3 ): AATAGCTGCAATAATGTAGCCCCTCCCTTTGGGGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|4 ): ACAATTAGATGCAGCAATGTAGCCATCACTTTTTTCGGGAGGTGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|6 ): AGTAGCTGGCAATAATGTAGCCCTCCCCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|7 ): AAGTAGCCTGCAATAATGTAGCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|8 ): TTAGCTGCAATAATGTAGCCCTTTCCTTTGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|9 ): TTAGGTGCAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|10 ): TAGCTGCAATTAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): GCTGCAATAAGTAGCCGCTCTCCCGTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT
Unaligned ( gi|12 ): TGCTAGCTGCAATCAGTAGTCCTTCGCCTCTGGGGGTTAGGGTATACAATTCCATGGCTCCGTAAGGGATGTGATTCACTCCTTCGCCAACCCACAATTTCGATTATTTTA
Unaligned ( gi|13 ): AGCAGCAATAATGTAGCCCTGTAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|14 ): CTTAGATAACGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGACAATTTCGATTATT
Unaligned ( gi|15 ): GCAACAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|16 ): GTAGCTGCAATCATGTAGTCCTCGCCTCTGGGGGTAGGGTTACAATTCCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|17 ): TTGTTGCAATAATGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): GGGTGGGGGGTGGTATACAACTCATTTGGACTTCCGTAACGGTGCAGTAAGTTAGGCGCTCGTGATTAACTTCCGCAACATGTTCGATAA
Unaligned ( gi|19 ): GGGTAACAACTCCATAGGATCTCCGTTTATGGTTGACAGGCAGATGGCGGGGAATGACTACAATCTTCCAGATT
Unaligned ( gi|21 ): TTTTGGGGGAGGGGGGGGGGCTAACAACTCCATAGGATTCTCATTAATG
Unaligned ( gi|22 ): TAGCTGCAATAATGTTAGCCCTCTCCCCCCTTTTTTTGGGGTGGGGGGT
Alignments
lowQualScore : 1 3 3 888
lowQualScore : . . . ...
lowQualScore : 0 6 6 666
consensus : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGCATAA
Reference ( family-11606 ) : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGCATAA
gi|20 : CAGTTGCT-ACACAA-TATG--CCCCCTCTTTTTCAAAAGGGGAGGGGGGGGGGGCATAA
gi|23 : GGTGCA-AAACAA-TGT-----CCCTCTTTTTCAAAAGGGGGGGGGGac
gi|24 : CAGTTGCA-AAA-AA-TAT----CCCCTCTTTTTCAAAAGGGGG
gi|25 : CAGGTGCATAAACCACTATG--CCCCCTCTTTTTCAAAGGGGcat
gi|26 : AGGTGCA-AA-CAA-TATG--CCCCCTCTTTTTAAAAAGGGGGG
gi|27 : AGATGCA-AAACAA-TATG--CCCCCTCTTTT-CAAAGAGGG
gi|28 : AGGTGCA-AAGCAA-TATG---CCCCTCTTCTTTGAAAGGGGca
gi|29 : AGTTGCA-AAACAA-TATG--CCCCCTC-TTTTCAAAa
gi|30 : GCA-AAACAA-TATG---CCCCTCTTTTTCAAAAGGGGgagcg
gi|31 : CAGTTGCA-AAACAA-TATG--CCCCCTCTTTTTCAcat
gi|5 : AGCTGCA-A--TAA-TGTGTACCTCTCCTTTTTCAGGGAGGGGGGGGGGG
blockSeqs : G T C TAC
blockSeqs : T . . C
blockSeqs : G . . C
blockSeqs : G . . C
blockSeqs : A . . C
blockSeqs : G . . C
blockSeqs : T . . .
blockSeqs : T . . .
blockSeqs : C . . .
blockSeqs : . . .
blockSeqCons :
originalCons : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGCATAA
finalCons : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGCATAA
20 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTACATGTAGCTGCAATAATGTTGCCCTCTCCCCCTTTTTTATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAA
Unaligned ( gi|2 ): TAATTTAGCTGCAATAATAGTACCTCTGCTCTCCTTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTG
Unaligned ( gi|3 ): AATAGCTGCAATAATGTAGCCCCTCCCTTTGGGGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|4 ): ACAATTAGATGCAGCAATGTAGCCATCACTTTTTTCGGGAGGTGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|6 ): AGTAGCTGGCAATAATGTAGCCCTCCCCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|7 ): AAGTAGCCTGCAATAATGTAGCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|8 ): TTAGCTGCAATAATGTAGCCCTTTCCTTTGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|9 ): TTAGGTGCAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|10 ): TAGCTGCAATTAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): GCTGCAATAAGTAGCCGCTCTCCCGTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT
Unaligned ( gi|12 ): TGCTAGCTGCAATCAGTAGTCCTTCGCCTCTGGGGGTTAGGGTATACAATTCCATGGCTCCGTAAGGGATGTGATTCACTCCTTCGCCAACCCACAATTTCGATTATTTTA
Unaligned ( gi|13 ): AGCAGCAATAATGTAGCCCTGTAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|14 ): CTTAGATAACGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGACAATTTCGATTATT
Unaligned ( gi|15 ): GCAACAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|16 ): GTAGCTGCAATCATGTAGTCCTCGCCTCTGGGGGTAGGGTTACAATTCCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|17 ): TTGTTGCAATAATGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): GGGTGGGGGGTGGTATACAACTCATTTGGACTTCCGTAACGGTGCAGTAAGTTAGGCGCTCGTGATTAACTTCCGCAACATGTTCGATAA
Unaligned ( gi|19 ): GGGTAACAACTCCATAGGATCTCCGTTTATGGTTGACAGGCAGATGGCGGGGAATGACTACAATCTTCCAGATT
Unaligned ( gi|21 ): TTTTGGGGGAGGGGGGGGGGCTAACAACTCCATAGGATTCTCATTAATG
Unaligned ( gi|22 ): TAGCTGCAATAATGTTAGCCCTCTCCCCCCTTTTTTTGGGGTGGGGGGT
Alignments
lowQualScore : 1 3 3 888
lowQualScore : . . . ...
lowQualScore : 0 6 6 666
consensus : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGCATAA
Reference ( family-11606 ) : CAGNTGCA-AAACAA-TATG--CCCCCTCTTTTTCAAAAGGGGGGGGGGGGGGGGCATAA
gi|20 : CAGTTGCT-ACACAA-TATG--CCCCCTCTTTTTCAAAAGGGGAGGGGGGGGGGGCATAA
gi|23 : GGTGCA-AAACAA-TGT-----CCCTCTTTTTCAAAAGGGGGGGGGGac
gi|24 : CAGTTGCA-AAA-AA-TAT----CCCCTCTTTTTCAAAAGGGGG
gi|25 : CAGGTGCATAAACCACTATG--CCCCCTCTTTTTCAAAGGGGcat
gi|26 : AGGTGCA-AA-CAA-TATG--CCCCCTCTTTTTAAAAAGGGGGG
gi|27 : AGATGCA-AAACAA-TATG--CCCCCTCTTTT-CAAAGAGGG
gi|28 : AGGTGCA-AAGCAA-TATG---CCCCTCTTCTTTGAAAGGGGca
gi|29 : AGTTGCA-AAACAA-TATG--CCCCCTC-TTTTCAAAa
gi|30 : GCA-AAACAA-TATG---CCCCTCTTTTTCAAAAGGGGgagcg
gi|31 : CAGTTGCA-AAACAA-TATG--CCCCCTCTTTTTCAcat
gi|5 : AGCTGCA-A--TAA-TGTGTACCTCTCCTTTTTCAGGGAGGGGGGGGGGG
20 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTACATGTAGCTGCAATAATGTTGCCCTCTCCCCCTTTTTTATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAA
Unaligned ( gi|2 ): TAATTTAGCTGCAATAATAGTACCTCTGCTCTCCTTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTG
Unaligned ( gi|3 ): AATAGCTGCAATAATGTAGCCCCTCCCTTTGGGGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|4 ): ACAATTAGATGCAGCAATGTAGCCATCACTTTTTTCGGGAGGTGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|6 ): AGTAGCTGGCAATAATGTAGCCCTCCCCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|7 ): AAGTAGCCTGCAATAATGTAGCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|8 ): TTAGCTGCAATAATGTAGCCCTTTCCTTTGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|9 ): TTAGGTGCAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|10 ): TAGCTGCAATTAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): GCTGCAATAAGTAGCCGCTCTCCCGTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT
Unaligned ( gi|12 ): TGCTAGCTGCAATCAGTAGTCCTTCGCCTCTGGGGGTTAGGGTATACAATTCCATGGCTCCGTAAGGGATGTGATTCACTCCTTCGCCAACCCACAATTTCGATTATTTTA
Unaligned ( gi|13 ): AGCAGCAATAATGTAGCCCTGTAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|14 ): CTTAGATAACGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGACAATTTCGATTATT
Unaligned ( gi|15 ): GCAACAATAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|16 ): GTAGCTGCAATCATGTAGTCCTCGCCTCTGGGGGTAGGGTTACAATTCCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|17 ): TTGTTGCAATAATGTAGCCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): GGGTGGGGGGTGGTATACAACTCATTTGGACTTCCGTAACGGTGCAGTAAGTTAGGCGCTCGTGATTAACTTCCGCAACATGTTCGATAA
Unaligned ( gi|19 ): GGGTAACAACTCCATAGGATCTCCGTTTATGGTTGACAGGCAGATGGCGGGGAATGACTACAATCTTCCAGATT
Unaligned ( gi|21 ): TTTTGGGGGAGGGGGGGGGGCTAACAACTCCATAGGATTCTCATTAATG
Unaligned ( gi|22 ): TAGCTGCAATAATGTTAGCCCTCTCCCCCCTTTTTTTGGGGTGGGGGGT