lowQualScore : 1111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222 3333333333333333333333 11 1 777777 22 2222 1 333333 22 333 5555555555555 111 22222222222222 1 33333333333 2222 11 11 111111 111 6666666666666666666666666666666666666 222 111 1 11 1111111 1 1 1111 222 222222222222222 1111 1111111 222222222 1111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111 33333 111 1111 77777777777777777777777777 111 111 44444444444444444444444444444444444444 3333 5555555555555555555555555555555 22222222222222222 11 11 111 1 11 11111 111111 333 2222222 2222222 55555555555 33333333333333333333333333 11
lowQualScore : 6 6 7 6 6 66666 1111111111111111111111 22 5 6 6 444444 6 6 11 8888 6 5 999999 44 6 111 999 99 99 3 55 6666666666666 1 7 9 6 99 111 55555555555555 3 33333333333 8 8 8 8888 0 8 0 5 3 5 5 3 33 22 7 5 11 5 6 666666 0 4 000 77 77 4444444444444444444444444444444444444 8 999 111 3 666 1 22 5555555 0 9 4 3 6 6 6 1 2 8888 6 333 1 0 88 888888888888888 8888 3 4 4 4444444 666666666 0000 5 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 55555 33333 0 5 0 0 66 000 7777 5 4 66666666666666666666666666 8 8 999 999 55555555555555555555555555555555555555 0 6666 3 0000 6 6 1 4444444444444444444444444444444 9 77777777777777777 7 99 8 8 11 666 1 0 3 44 8 1 88888 0 3 1 111111 99 0 222 8 3333333 5555555 22222222222 55555555555555555555555555 44
lowQualScore : . . . . . ..... ...................... .. . . . ...... . . .. .... . . ...... .. . ... ... .. .. . .. ............. . . . . .. ... .............. . ........... . . . .... . . . . . . . . .. .. . . .. . . ...... . . ... .. .. ..................................... . ... ... . ... . .. ....... . . . . . . . . . .... . ... . . .. ............... .... . . . ....... ......... .... . .................................................................................... ..... ..... . . . . .. ... .... . . .......................... . . ... ... ...................................... . .... . .... . . . ............................... . ................. . .. . . .. ... . . . .. . . ..... . . . ...... .. . ... . ....... ....... ........... .......................... ..
lowQualScore : 0 0 0 0 0 00000 0000000000000000000000 00 0 0 0 000000 0 0 00 3333 5 0 222222 66 0 000 888 00 88 7 00 3333333333333 0 0 0 7 22 777 88888888888888 2 66666666666 0 0 0 6666 8 0 7 7 0 7 7 3 66 11 9 3 99 7 6 666666 1 0 000 99 99 0000000000000000000000000000000000000 0 444 777 3 888 7 22 3333333 3 8 0 7 7 7 7 0 2 3333 7 000 7 1 00 000000000000000 2222 6 4 8 4444444 999999999 6666 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222 33333 7 7 1 1 99 000 9999 7 3 22222222222222222222222222 0 0 888 666 44444444444444444444444444444444444444 8 4444 2 4444 0 4 4 0000000000000000000000000000000 0 00000000000000000 8 66 0 0 00 888 0 0 2 66 0 0 00000 7 7 0 888888 22 8 444 0 8888888 2222222 00000000000 22222222222222222222222222 00
consensus : GGGCACATAAATTGTAAATTTCAGGTTCTTTGCACCC--TGGGTTCCTGGG---GTGGGCAAAACTGCCCAAAAGTGA-ACAATTTTCANNNNNNNNNNNNNNNAAATTCTTT----ATTTGGTATGAAGCATCTT-T-GGGACAAGGGNCACATAAA-TTGTAAATTT-CAGGTCTCTTGCACCCCTGGGNCCNTGGGG--T-GGGCGAA--CTGCCCAAAAGTGACCAATTTT-C--AAAA---ATCTTCTT-----CTNTAC---AACCGCA-CGNGCC-GA-G-A-GAAACTA-AATGCA--TGGTGA-TGTAGAGCAGG-AAGGCCTC-TA-CCAAAATTG--TAAATTTGGTGATCCCCGGG-GTAGGGGTTCTGACNCCAGGGTGGGGCCAAACT---T--GGT--ACATAGTG-------------T-TTACGTGT-AAAACATTT----T-GAAAAACGTCTTCTTTAA---TGCT-AT-T-GATAN-TAA-A--T--TAAAACTAAA-TGGANANTT-GG-AATG-AGCAGGAAG-TN-TTC-TATTATAATTGTAAATTTCGTGATCCTAGGG------GTAGGGGTTTT--GGTATTAG-GGTGGG-------GCC---------AAA----ATGG-TCGNTG---A----TGA-------------A--A--T----------TG--------A----TT------T----T-----------CTTCTTNAT-NACTACCAT-TCCAA-TTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAA-GGGCACATAAATTG-TAA----ATTT-CA-GGTTCTCTTGCA-CCCCGGGGGCCTT-GG-G-GGT--GGG--GC-AAAACTGCCNAAAAGTGACCAATTTT---CAAAAATCTTCTTT--A-CAACCGCGC---ATGCGCG-AGA-GAAACTAAA--T--AGATA----GTGATGTAGAGCAGGAAGGCCTC-TA-CC--AAAATTG--TAAATTTGGTGATCCCTGGG-GTAGGGGTTCTGACCCCAGGGTGGGGCCAAACT---T--GGT--ACATAGTG--TTTA-TATGT-A-----AACAT----AT-GAA----A-A----CTTCTTTAAGTTATCCGAT--CTATA--A-ATAGTAAAATAAAAATTT
Reference ( gi|2 ) : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGAA-TAATGCAATCTTTATGTGTGAAAATGCATAAATCATTT----ATTTGGTATGAAGAATCAT-T-GGGACAAGGAGCACACAAA-T-GTAAATTT-CAGATCTCTTGCACCCCTGGGGCTTTGGGG--CAGGGCAAAAACTGTCAAAAAGTGACAAATTTT-C--AAAA---ATCTTCTT-----CTTTAC---AACCCCA-CATGTCTGA-G-A-GAAACTA-AATGCA--CAGTGA-TGTAGAGCAGG-AAGGCCTC-TA-CCAAAACTG--TAAATTTGGTGATCCCCGGG-GTAGGGGTTATGACCCCAGGGCGGGGCCAAACT---T--GGT--ACATAGTG-------------T-TCATATGT-AAAACA-------T-GAAAAACATCTTCTTTAA---TGCT-AT-T-GATAT-TAA-A--T--TAAAACTAAATTGGATATTT-GG-AATG-AGCATGGAG-TT-TTC-TATTGTAATTGTAAATTTCATGATCCTAGGG------GTAGAGGTTGT--GGTATTAG-GATGGG-------GCC---------AAA----ATGG-TCACTG---A----TGA-------------A--A--T----------TG--------A----TT------T----T-----------CTTCTTGGT-CACTATGAT-TCCAA-TTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGGGGACATTCATTA-AAA----AATT-CA-GGTTTTCTTGTA-CCCCAGGGGCCTT-AA-G-GGT--GGA--GCAAAAATTGCCAAAAAGTGACCAATTTT---AAGAAATCTTCTCT--A-CAACTACAC---ATGTGTA-ATA-AAAACTAAA--T--AGATA----GTGATATAGAGCAGGAGGGCCTC-TA-CC--AAAATTG--TAAATTTGGTGATCCCCGGG-GTAGGGGTTCTGACCTCAGGGCGGGGCCAAACT---T--GGT--ACATAGTG--CTTA-TATGT-A-----AACAT----AT-GAA----A-A----CTTCTTTAAGGTATCCGAT--CCATA--A-ATAGCAAAACAAAAATTT
gi|1 : GGGCACATAAATTGTAAATTTCAGGTTCTTTGCACCC--TGGGTTCCTGGG---GTGGGCAAAACTGCCCAAAAGTGA-ACAATTTTCA
gi|9 : tgatcctaggataggggttttggtattagggtgggccaaaatgctgaaaaatggtcatagatgaaatgtgttaaaattgaatatttatagcttcttcttaataactactagtcaattctttccaaatttggtatgaagcatcttgtggaacaaaAAATTCTTTTAAAATTTGGTAAAAAGCATC-T-T-------AGGGTCACATAAATT-GTAAATAT-CAGA-CACATGCACCCCaaaatctgtgcatggtgatgtagagcaggaagactagagcaggaagacctctaccaaaattgtaaatttggtgatcccggggtaggggttctgacccaggatggggccaaacttggtacatagtatttatatgtaaacattttttttaaaaaactgttcagtaatgctattcttattaatttgcaacaaaatgaaatttgtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|3 : cgtacctcagcaattgaacatttcagcttttcgatatttatccttc----ATTTGGTATGAAGCATCTT-TTGGGACAAGG-GCACATAAA-TTGTAAATTTTCAGGTCTCTTGCACCCCTGGGGCTGGGAGG--T-GGGCAAA--CTGCCCAAAAGTGACCAATTTT-C--AAAA---ATCTTCTT--------TAC---AACCGCA-C-TGCCCGA-G-A-GAAACTA-AATGCA--TGGTGA-TGTAGAGCAGG-AAGGCCTC-TA-CCAAAATTG--TAAATTTGATGATCCCT-GG-ATAGGGGTTCTGACTCCAGGGTGGGGCC--ACT---T--GGT--ACATAGTG-------------TAT--TGTGT-AAAACATT-----T-GAAAAACGTCTTCTTTAA---TTCT-AT-T-GATAG-TAA-A--T--TAAAACTGAA-TGGATAATT-GG-AATG-AGCAGGGAG-TA-TTC-TA-TATAATTGTAAATTTT-TGATCCTAGGAAGACCCGTGGGGGTCCC--GG-GTTAG-AATAGG-------ccccccccccaagtaagtaaaaatgccttggaaatttactatttttcaaaaactattcata
gi|1 : aaaagtgaccaatttttcaaaaatcttcttctttacaaccgcacatgcctgagagaaactaaatgcatggtgatgtagagcaggaaaggcctctaccaaaattgtaaatttggtgattcccggggtagggttctgacaccagggtgggccaaacttggtacatagtgtagtatgtgtaaaacatttgtgaaaaacatctttaatgctattgatagtaaattaaaactgaatggaaaattggaatgagcagggagtattctattataattgtaaattttttgatcctagggatagggttttgctaataggtggggccaaaatgccgaaaatggtcatagatgaaaatgtgttaaacaattgaacatttttagcttcttcttataactccagtccaattcttttcaa----ATTTGGTATGAAGCATCTTGT-GGAACAAAGGGCACATAAA-TTGTAAATTT-CAGGTTCTTTGCACCC-TGGGTTCCTGGGG--T-GGGCAAAA-CTGCCCAAAAGTGAACAATTTT-C--AAAA---ATCT
gi|4 : tgatcctaggataggggttttggtattagggtgggccaaaatgctgaaaaatggtcatagatgaaatgtgttaaaattgaatatttatagcttcttcttaataactactagtcaattctttccaaTTGGTAT-AAGCATC-T-T-TGGACAAGG--CACATAGAGT-GTTAATT--CAGGAGTCTTGCCTCCC--GGACCTTGGGGGGTGGGGGGGG----GTAAAAAAGTGACAAATTTT-CAAAAAA---AT-TTCTT-----CTAT-C---AACCACACCAAATC-AA-G-ATGAAACTA-AATGCAGTTATTGA-TGTAGAGCAGG-AA--CCTTATACCCAAAATTGA-TAAATTTAGT-ATTCCTGGGTGCA--GGTTCT-ATTCCA-GGTGGGGCCAAACT---T--GCTAAACATAGTGTT-----------T-TTATATGTAAAAACA-------TCGAATAGCAACTTCCTT-A---TGTT-ATGT-GA----TAA-C--T--TGAAATTTAAATAGAAATTT-GG-AATGAAGCAGGAAGCCT-TTCAGACT-TAGTTTT-AATTTCATGA-CCTA--G------GTAGGAATT-T---GTAGTAG-GGTGGG-------GCC---------AAA----ATGG-TCAGTG--------TGA-------------A--ATGT----------TT--------T----TT------T----T-----------TTTCTTAAT-CACTA-AATCTCCAA-T--CTTTCAA-----TGG-ATAAGGAAGCGTC----TT-T-------------------ATTG-TAA----ATTTCCATGATTCTCCTGCATCCCCA---GCTTT-AAGG-GGT--GGG--ACCAAAATT---AA---------AATTTT---CAAAAATCTTCTTTTAA-AAACTGCAC---GT-CCTA-AGA-AAAACAAAA--T--GCATA----GT-ATGTA-AACAGGA-AGCCTC-TA-CCAAAAAATT---TAAATTTGGTgtgcatggtgatgtagagcaggaagactagagcaggaagacctctaccaaaattgtaaatttggtgatcccggggtaggggttctgacccaggatggggccaaacttggtacatagtatttatatgtaaacattttttttaaaaaactgttcagtaatgctattcttattaatttgcaacaaaatgaaatttgtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|27 : gtggtcgcttacaattgaaagatttaaattcttctttatatactacctccaatttcttttcaaaGGGCAAGGGCCACATAAA-TTGTAAATGT-CAGGTCTTTTGCA
gi|3 : AAAAGTGACCAATTTTTC--AAAA---ATCTTCTT-----CTTTAC---AACCGCA-CATGCCTGA-G-A-GAAACTA-AATGCA--TGGTGA-TGTAGAGCAGGAAAGGCCTC-TA-CCAAAATTG--TAAATTTGGTGATTCCCGGG-GTA-GGGTTCTGACACCAGGGT-GGGCCAAACT---T--GGT--ACATAGTG-------------TAGTATGTGT-AAAACATTTG---T-GAAAAACA---TCTTTAA---TGCT-AT-T-GATAG-TAA-A--T--TAAAACTGAA-TGGAAAATT-GG-AATG-AGCAGGGAG-TA-TTC-TATTATAATTGTAAATTTTTTGATCCTAGGG------ATAG-GGTTTT--GCTAATAG-G-TGGG-------GCCAAAATGCCGAAA----ATGG-TCATAG---A----TGAAAATGTGTTAAACA--A--T----------TGAAC-----A----TTTTTAGCT----T-----------CTTCTT-AT-AACT-CCAG-TCCAA-TTCTTTTCAAATT--TGGTAT---GAAGCATCT---TT-TGGGACAA--GGGCACATAAATTGTAAA----TTTT-CA-GG-TCTCTTGCA-CCCCTGGGGC--T-GG-GAGGT--GG---GC--AAACTGCCCAAAAGTGACCAATTTT---CAAAAATCTTCTTT--A-CAACCGCAC----TGCCCG-AGA-GAAACTAAA--T--GCATG----GTGATGTAGAGCAGGAAGGCCTC-TA-CC--AAAATTG--TAAATTTGATGATCCCT-GG-ATAGGGGTTCTGACTCCAGGGTGGGGCC--ACT---T--GGT--ACATAGTG----TATTGTGTAA-----AACAT----TT-GAA----A-AACGTCTTCTTTAA--T------T--CTATT--G-ATAGTAAATTAAAA
gi|10 : TT-C--AAAATCCATCCTCCT-----TTTTTCCTAAAAAACA-CGGGTCAGTTG-A-AAAACCACAATGCA----G-GACTGTAAAG-----AAAGCC-C-TA-CCAATTCCG--AAAATGCATTCATAC---AG-CTAGGCGTTGACACCCCAGGGCGG---CAAACC---TTGGGT--ACA-AGTG-------------T-T-ACGTGC-AAAActgaatggataattggaatgagcagggagtattctatataattgtaaatttttgatcctaggaagacccgtgggggtcccgggttagaatagg
gi|19 : aaaatgactccacccTT-T--AAAA---ATCTTCTTTACCCCTGTAC---AGCCTCA---------A-GAA-AAAACTA-TTTGTG--TGGTTA-TGAAGACCACA-GAGTCCTC-TG-CCA
gi|1 : cTAGAGCAGG-AAGACCTC-TA-CCAAAATTG--TAAATTTGGTGAT-CCCGGG-GTAGGGGTTCTGA-CCCAGGATGGGGCCAAACT---T--GGT--ACATAGTA-------------T-TTATATGT--AAACATTTTTTTT-AAAAAAC-TGTTCAGTAA---TGCT-AT-T-CTTAT-TAA-T--T--TGCAACAAAAT--GAAATTT-GT-AATG-AACATGAAG-CC-TTT-TATCTTAATTATAA
gi|14 : tgatcctaggataggggttttggtattagggtgggccaaaatgctgaaaaatggtcatagatgaaatgtgttaaaattgaatatttatagcttcttcttaataactactagtcaattctttccaaatttggtatgaagcatcttgtggaacaaagggcacataaattgtaaatttcaggttctttgcaccctgggttcctggggtgggcaaaactgcccaaaagtgaacaattttcaaaaatctgtgcatggtgatgtagagcaggaagacGAGGAGG-AGTGTCTG-TA-CCAAATTTGCATAAATTTTAT-ATCCTT--T-GTAGGGGTTTTAGCTCC-GGGTGGGACCAAATTGTGT--GGT--ccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|23 : cttTA--TAAATTTCATGATCCCAGGG-ATAAGTATTCTGA--------TGGGGCCAAAttgttgattatgaaagatttttatcttttaaca
gi|11 : gtcttcacagtcagGGGTTTTGGTACCAGGGTATGGCCAAA-T---T--GG---GCATAGTGATTGAATGTCTTTT-TCACTTGT-CAA----------T-GAAAGAC---TTCTTTAATTTTGCTGAT-C-AATAC-TAT-A--TACAAAAACTAAA-TAGATAGTTAGG-AAatgg
gi|7 : AA---TGCTCAT-TAGACATGTAATACCT--TAAAACTAAATTGGATATTT-GGAAATG-AGCAGGTAT-TTCTTC-TAT----AT-----ATATCTTGATCCTA---------------GTTATTAGGTATTAGAGGTGGG-------CTA---------AAA----ATGG-ATAATGTGAA----TGA-------------A--A--TAA--------TGTTAATTCTA----TT------T----TGAACATTTTAACTTTCTTGT-CACTACCTT-TCCAA-TTC-TTTCAAATT--aaacagaaaggggtgt
gi|1 : atctcataG-AGCAGGAAG-AC-CTC-TACCAAAATTGTAAATTTGGTGATCCC-GGG------GTAGGGGTTCT--GAC-CCAG-GATGGG-------GCC---------AAA----
gi|23 : tgatcctaggataggggttttggtattagggtgggccaaaatgctgaaaaatggtcatagatgaaatgtgttaaaattgaatatttatagcttcttcttaataactactagtcaattctttccaaatttggtatgaagcatcttgtggaacaaagggcacataaattgtaaatttcaggttctttgcaccctgggttcctggggtgggcaaaactgcccaaaagtgaacaattttcaaaaatctgtgcatggtgatgtagagcaggaagactaTATAAATTTCATGATCCCAGGG------ATA----------AGTATTCT-GATGGG-------GCC---------AAA----ATGG-cttggtacatagtatttatatgtaaacattttttttaaaaaactgttcagtaatgctattcttattaatttgcaacaaaatgaaatttgtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|14 : gtcttcacagtcagTAAATTTTAT-ATCCT--TT------GTAGGGGTTTT--AGC-TCCG-GGTGGG-------ACC---------AAATTGTGTGGTTTGTTGATTA----TGA-------------A--A--------------G--------A----TT------T----T-----------TATCTT
gi|1 : cttgaggaggagtgtctgtaccaaatttgcaTGATCCTAGGA-------TAGGGGTTTT--GGTATTAG-GGTGGGCCAAAATGCTGA-------AAA----ATGG-TCATAG---A----TGA-------------A--A--TGTGTTAAAATTG--------AATATTTATAGC-T----T-----------CTTCTTAAT-AACTACTAG-TC-AA-TTCTTTCCAAATT--TGGTAT---GAAGCATC----TTGTGGAACAAA-GGGCACATAAATTG-TAA----ATTT-CA-GGTTCT-TTGCA-CCCTGGGTTCCT---G-G-GGT--GG---GC-AAAACTGCCCAAAAGTGAACAATTTT---CAAAAAT--------------CTGTGC---ATG-GTG-ATG-TAGAGCAGG--A--AGAC-----------TAGAGCAGGAAGACCTC-TA-CC--AAAATTG--TAAATTTGGTGAT-CCCGGG-GTAGGGGTTCTGACC-CAGGATGGGGCCAAACT---T--GGT--ACATAGTA--TTTA-TATGT-A-----AACAT----ttaaca
gi|11 : GGTTTT--GGTACCAG-GGTATG-------GCC---------AAA----TTGG-GCA-TA---G----TG-----------------A--T----------TG--------A----AT------G----T-----------CTTTT---T-CACTtttttttaaaaaactgttcagtaatgctattcttattaatttgcaacaaaatgaaatttgtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|4 : gTGG-TCGCTT---ACAATTGA-------------A--A--------------G--------A----TT------TAAATT-----------CTTCTTTATATACTAC--C-TCCAATTTCTTTTCAAA-T--TGGTAT----AAGCATC----TT-T-GGACAA---GGCACA-----TA-GAGTGTTAATT-CA-GG-AGTCTTGCC-TCCC--GGACCTTGGG-G-GGT--GGG--GGGGG----GTAAAAAAGTGACAAATTTTCA-AAAAAATTTCTTCT--ATCAACCACACCAAAT---CA-AGATGAAACTAAA--TGCAGTTA----TTGATGTAGAGCAGGA--ACCTTATACCC--AAAATTGA-TAAATTTAGT-ATTCCTGGGTGCA--GGTTCT-ATTCCA-GGTGGGGCCAAACT---T--GCTAAACATAGTGTTTTTA-TATGT-A-----AAAAC----ATCGAATAGCA-A----CTTCCTTATGTTATGTGATAACTTGA--A-AT--TTAAATAGAAATTTtgtcaatgaaagacttctttaattttgctgatcaatactatatacaaaaactaaatagatagttaggaaaaacagaaaggggtgt
gi|18 : gG---G----TGA-------------ACTA--T----------TGC-------A----TT------T----TAA---------CTTCTTGAT-AACTACCAT-TCCAA-TTCTTTTAAAATT--TTGTAT---GAAGTATC----TT-TGAGACAggaatgaagcaggaagcctttcagacttagttttaatttcatgacctaggtaggaatttgtagtagggtggggccaaaatggtcagtgtgaaatgtttttttttttcttaatcactaaatctccaatctttcaatggataaggaagcgtctttattgtaaatttccatgattctcctgcatccccagctttaaggggtgggaccaaaattaaaattttcaaaaatcttcttttaaaaactgcacgtcctaagaaaaacaaaatgcatagtatgtaaacaggaagcctctaccaaaaaatttaaatttggt
gi|9 : taaaagaaaactca-------------A--A--T----------TG--------AACA-TT------T----CAG---------CTTTTCGAT-ATTTATCCT-TCAAA-TTCTTTTAAAATT--TGGTAA---AAAGCATC----TT-AGGGTCA
gi|8 : cgtacctcagcTTTCGAATTGTCGGTAT---GA--CATTACCATT-TGGCACAGAGGGGAATATT-GTCA-TAA----TATT-CA-GGACTTCTTGC--TTCCATGA--CTG-AA-G-GACAGGGAGGGCAACAATTGTTTTAA--T-ATCACTTTTGTAAAAAAGTTTTTTATC-A-TAGCTGC-T---AT-TGCATATA-AAGAC-AAATTT--AGATACATTGTGATGTAGAcataaattgtaaatatcagacacatgcaccccccccccccccaagtaagtaaaaatgccttggaaatttactatttttcaaaaactattcata
gi|14 : ttgcGAGGAGGAGTGTCTG-TA-CC--AAATTTGCATAAATTTTAT-ATCCTT--T-GTAGGGGTTTT-AGCTCCGGGTGGGACCAAATTGTGT--GGT--
gi|23 : cttTA--TAAATTTCATGATCCCAGGG-ATAAGTATTCTGA--------TGGGGCCAAAttgttgattatgaaagatttttatcttttaaca
gi|10 : gtcttcacagtcagTAGGCGTTGACACCCCAGGGCGG---CAAACC---TTGGGT--ACA-AGTG---TTA-CGTGC-A-----AAatgg
gi|11 : aaaatgactccacccttcaaaatccatcctccttttttcctaaaaaacacgggtcagttgaaaaaccacaatgcaggactgtaaagaaagccctaccaattccgaaaatgcattcatacagcGGGTTTTGGTACCAGGGTATGGCCAAA-T---T--GG---GCATAGTG--ATTG-AATGT-CTTTTTCACTTGTCAAT-GAA----AGA----CTTCTTTAATTTTGCTGAT--CAATACTATATACAAAAACTAAAa
gi|24 : TAAGGTATCCGAT--CCATA--A-ATAG-AAA--AAAAATTtagatagttaggaaaaacagaaaggggtgt
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CAAATTATTGATTAATAAGGTTTCAAGCGCACTTTTGGACATACAGATTAGTAAGCATTATTGTGTATTTGCTTAATCTGTCATTGTAAGTAGCGATTATCCTTTCTACACTGCTTTTCCTTTAAGAAGTCTACCATTATCATGCTATATAGTGACTAACCAATTTGTAAACTCGGAAGATTGTTCTTTATTTATTTGTTTTGGTCCATAGTAATGTAGTCTAAAGGTGGCTTAAGTTTCTCGGACATCGGACATGTTCATTATGTTTAAGCAGATATGGTCTTTGGCTGGTTCAGCGGTTGTATCCTTCCCATCATACAGGTCAAAATCATATCATACAGTTGTAATTGTATTTATACTACCCATGGTCGTCATAGTCTCTATGC
Unaligned ( gi|6 ): ATCTTCAAAAATCTTCTCTATGTTCCTGAACATTTGACACAGCTAGAGACTGGCTACACAGCTGTAATCAGGTGAAGGCCCATAATTATAACCTCTAAAATATTCTGGTCCCTGAATCCAGAATTTAGGCCCCAGACTGGAGCACTAATTAGTATAGTGTAGTGGAAAATAAAAATGTGAAAATCTTCTCCTTTACTCCTGAAATAGTAA
Unaligned ( gi|12 ): ATGGTTTTCCGTGCGCTACTAAAAGTGTTACCCTTTCCTCCTAGAATGATACCCATACGATACATGGAGATTTGTATCCACCTATCGAATTTTGTTGGCTCCAAATAAGGTTAAGCACCATCTTAGGACAA
Unaligned ( gi|13 ): CACCCTCCAATAGCTGTTGTTAGGGAAAGGGGGGGTCAACTAGGTACTGAATCTGGACGGTAATGATCTGATCGCGAGACACATCCTGTCTGTGTAATCAGAGATGTTTTCCAGGCATGAATATGTTAG
Unaligned ( gi|15 ): AATCTTGAACGCAGCCCTGCACCCTTTGTGATATTGAAATGATAATCTTTTGTATCATATGAATATTTTGAAAGATCATAACACTCCAAATTGAGACTTAGAAATGCAAGTATGAGACT
Unaligned ( gi|16 ): CATGTCTGTCGGTCCGTCTGTAAACATAATGTATTCAGACATTAAAGTGTTAGCCTATTGACCCCAAATTCAATAGAGATATTCGACGACCCATGGGA
Unaligned ( gi|17 ): TACAGTGATTAAAATTTGTCATTGAAAACTTTTCAAATTTACTGACTATAGTATAAAAACTAAATGGATATTTACGAAAGCTGAAAAAGATGTAC
Unaligned ( gi|20 ): CCGAGAAAAACAATGCCATAGACCAGTATGTCTTAGGACTAGTAGGAAAGGTAAGTCTAATATAAAGCAAGTAACACAT
Unaligned ( gi|21 ): TGAAAGACTTCTTCTCTTTTGGTGATACTATATTAACACCAAAAAATATATATTTAAAAAAACCAAAAAGGGGGGTA
Unaligned ( gi|22 ): TGAAAGACTTCTTTATTTTGCTGATACTTATTAAAACTCAATGTGTATTTAGGAAAATCAGAAAGGGGTG
Unaligned ( gi|25 ): TCAGCGTTGTACTTTCCACATCGAGTCATCAAATCATACATGTATACA
Unaligned ( gi|26 ): AATGTCTATCTTTCCGTCTGTAAACATAATGATTTCCAGGCATTAA
Alignments
lowQualScore : 11111111111111111
lowQualScore : 1 22222 1 33333333333333333 11 1 2 2 1111 555555555555555555555 6666 11 11 1111 44444444444444444444 111 111 111111 111 33333333333 11 555555555555555555555 33333 11 111 1 1111 1 111 1 33333333 3333333333333333333 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 1111 111 1 33333333333333333 11 1111111 4444444444444444444444444444444 1 111 2222222222 11 111 11111 1 222222 3333333 22222222222 1111 111
lowQualScore : 6 6 7 6 6 66666 5 6 99999999999999999 22 5 6 6 7 0 5555 333333333333333333333 0000 6 33 5 44 0 999 6 99 1 11 8888 99999999999999999999 000 5 000 77 777777 3 3 111 3 00000000000 6 6 99 2 77 6 6 0 11 8 5 1 66 8 55 1 2 1 2 99 99 000000000000000000000 6 33333 00 111 3 666 4444 7 99 6 3 1 1 5 5 1 1 6 555 1 6 77 1 3 00000000 8 5 5 1111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 66 11 1 1 5 0 0 66 000 7777 888888888 555 2 7 6 6 888 6 6 1 6 33333333333333333 8 44 0000000 1 0 3 8 6 9999999999999999999999999999999 99 3 6 6 6 0 4 99 2 99 000 9999999999 2 33 0 8 6 3 444 2 55555 0 7 888888 5555555 0 0 99999999999 22 7777 6 333
lowQualScore : . . . . . ..... . . ................. .. . . . . . .... ..................... .... . .. . .. . ... . .. . .. .... .................... ... . ... .. ...... . . ... . ........... . . .. . .. . . . .. . . . .. . .. . . . . .. .. ..................... . ..... .. ... . ... .... . .. . . . . . . . . . ... . . .. . . ........ . . . ................... ......................................................................................... .. .. . . . . . .. ... .... ......... ... . . . . ... . . . . ................. . .. ....... . . . . . ............................... .. . . . . . . .. . .. ... .......... . .. . . . . ... . ..... . . ...... ....... . . ........... .. .... . ...
lowQualScore : 0 0 0 0 0 00000 0 0 00000000000000000 00 0 0 0 5 0 7777 333333333333333333333 0000 5 22 0 88 8 888 0 55 0 88 5555 00000000000000000000 222 7 000 99 777777 3 5 777 7 88888888888 7 7 22 5 77 7 7 8 00 0 0 4 44 0 00 0 5 0 5 22 22 777777777777777777777 7 22222 66 777 3 888 2222 5 22 7 3 0 0 7 7 1 0 7 888 7 0 99 4 4 55555555 8 2 0 0000000000000000000 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 99 0 7 7 7 1 99 000 9999 222222222 888 5 2 7 7 777 7 7 7 7 66666666666666666 0 00 4444444 0 8 2 2 7 0000000000000000000000000000000 22 7 7 7 0 8 3 22 5 22 222 2222222222 5 88 8 0 0 2 000 5 22222 0 8 888888 0000000 8 8 44444444444 22 0000 8 888
consensus : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGAATTGATGCAATT-TTCATNTTTTANAANNTNN------AAATTCTTTTCAAATTTGGTATGAAGCATCTTT-GGGACAAGGG-CACATAAATTGTAAATTT-CAGGTCTCTTGCACCCCCGGGGCCTCGGGG--T-GGGC-A-----AA--CTGCCN--AAAAGTGAC--CAATTTT-CAAAA---A--TCTTCTT-----CTTTAC---AACCGCAC-GNGTC-GA--GA-GAAACTA-AATGCA--TGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATCCCCGGG-GTAGGGGTTCTGACNCCAGGGCGGGGCCAAACTT--GGTA--CATAGTG-------------T-TT--ACGTGTAAAA-CATTT-TGAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAACT-AAAT-GGATANTTGGAA-TGA-GCAGGGAGTNT-TCTA--CTATAATTG--TAAATTTCATGATCCTAGGG------GTAGGGGTTTTGGTATTAG-GGTGGG-------GCC---------AAAATG--------GTC---GNTG---A-------TGA-------------A--A--T--TG--------A----TT-----TT-A---------CTTCT--TNATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGG-C-ACATAAATTGT-A-AA-T-TT-CA-GGTTCTCTTGCA-CCC-----CGGGGGCCTT-AGG-GGTGGGGCAA-AA-CTGCCCAAAAGTGACCAATTTT-CAAAAATCTTCTTT--AC---A--ACTGC----GCAT---GCGCGAG--ANAAACT-AGATACATAGTGATGTAGAGCAGG--AAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGGGTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GNTATCCGATCTATAAAT----AGCAAAATAAAAATTT
Reference ( family-1160 ) : GGGCACATAAATTGTAAATTTCAGGTTCTTTGCACCCT--GGGTTCCTGGGG---TGGGCAAAACTGCCCAAAAGTGA-ACAATT-TTCANNNNNNNNNNNNNNN------AAATTCTTT----ATTTGGTATGAAGCATCTTT-GGGACAAGGGNCACATAAATTGTAAATTT-CAGGTCTCTTGCACCCCTGGGNCCNTGGGG--T-GGGC-G-----AA--CTGCCC--AAAAGTGAC--CAATTTT-CAAAA---A--TCTTCTT-----CTNTAC---AACCGCAC-GNGCC-GA--GA-GAAACTA-AATGCA--TGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATCCCCGGG-GTAGGGGTTCTGACNCCAGGGTGGGGCCAAACTT--GGTA--CATAGTG-------------T-TT--ACGTGTAAAA-CATTT-TGAAAAACGTCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAACT-AAAT-GGANANTTGGAA-TGA-GCAGGAAGTNT-TCTA--TTATAATTG--TAAATTTCGTGATCCTAGGG------GTAGGGGTTTTGGTATTAG-GGTGGG-------GCC---------AAAATG--------GTC---GNTG---A-------TGA-------------A--A--T--TG--------A----TT-----TT-----------CTTCT--TNATNACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGG-C-ACATAAATTGT-A-AA-T-TT-CA-GGTTCTCTTGCA-CCC-----CGGGGGCCTT-GGG-GGTGGGGCAA-AA-CTGCCNAAAAGTGACCAATTTT-CAAAAATCTTCTTT--AC---A--ACCGC----GCAT---GCGCGAG--AGAAACT-AAATAGATAGTGATGTAGAGCAGG--AAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGGGTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATAT------GAAAA----C--TTCTTTAA-GTTATCCGATCTATAAAT----AGTAAAATAAAAATTT
gi|1 : TGATCCTAGGA-------TAGGGGTTTTGGTATTAG-GGTGGGCCAAAATGCTGA-------AAAATG--------GTCATAGATG---AAATGTGTTAA-------------A--A--T--TG--------AATATTTATAGCTT-----------CTTCT--TAATAACTACTAG-TC-AATTCTTTCCAAATT--TGGTAT---GAAGCATC----TTGTGGAACAAAGGG-C-ACATAAATTGT-A-AA-T-TT-CA-GGTTCT-TTGCA-CCC-----TGGGTTCCT---GG-GGT-GGGCAA-AA-CTGCCCAAAAGTGAACAATTTT-CAAAAATCT------------------GT----GCAT---G-GTGAT--GTAGAGC-AGGAAGAC-------TAGAGCAGG--AAGACCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCC-GGGGTAGGGGTTCTGA-CCCAGGATGGGGC-CAAACT---TGGTACATAGTAT--TTATATGT-AAACATTTTTTTTAAAAAA----CTGTTCAGTAATGCTATTC---TTATTAATTTGCAACAAAAT-GAAATTT
gi|10 : AAAATGACTCCACCCTT-CAAAATCCA--TCCTCCT-----TTTTTCCTAAAAAACAC-GGGTC-AGTTGA-AAAACCACAATGCA--GGAC--TGTAAAG----AA-AGCC-C-TACC-AA--TTCCG-AAAATGCATTCATAC---AG-CTAGGCGTTGACACCCCAGGGCGG---CAAACCTTGGGTA--CA-AGTG---------------TT--ACGTGCAAAA-gtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|11 : GGGTTTTGGTACCAGGGTATGGCCAAA-TT--GG-G--CATAGTGATTGAATGTCTTTT-TC--ACTTGTCAA--------TGAAAGAC---TTCTTTAATTTTGCTGAT-C-AA----TACTATATACAAAAACT-AAAT-AGATAGTTAGGA-AAA-ACAGAAAG
gi|14 : -TGA-GGAGGA-GTGTCTGTA--CCAAATTTGCATAAATTTTAT-ATCCT--TT------GTAGGGGTTTTAGC-TCCG-GGTGGG-------ACC---------AAATTGTGTGGTTTGTT---GATT---A-------TGA-------------A--A------G--------A----TT-----TT-----------TATCT--TT-TAACgggtgt
gi|14 : ctGAGGAGG--AGTGTCTGTACC--AAATTTGCATAA----------ATTTTAT-ATCCTT--TGTAGGGGTTTTAGCTCC-GGGTGGGAC-CAAATTGTGTGGTa
gi|18 : cttG---G-------TGA-------------ACTA--T--TGC-------A----TT-----TTAA---------CTTCT--TGATAACTACCAT-TCCAATTCTTTTAAAATT--TTGTAT---GAAGTATC----TT-TGAGACAttgttgattatgaaagatttttatcttttaaca
gi|19 : taaaagaaaactcaTT-TAAAA---A--TCTTCTTTACCCCTGTAC---AGCCTCAA-GA---------A-AAAACTA-TTTGTG--TGGTTATGAAGACCACAGA-GTCCTC-TGCC-A
gi|2 : cGAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGAA-TAATGCAATC-TTTATGTGTGAAAATGCAT------AAATCATTT----ATTTGGTATGAAGAATCATT-GGGACAAGGAGCACACAAAT-GTAAATTT-CAGATCTCTTGCACCCCTGGGGCTTTGGGG--CAGGGC-A-----AAAACTGTCA--AAAAGTGAC--AAATTTT-CAAAA---A--TCTTCTT-----CTTTAC---AACCCCAC-ATGTCTGA--GA-GAAACTA-AATGCA--CAGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAACT--G-TAAATTTGGTGATCCCCGGG-GTAGGGGTTATGACCCCAGGGCGGGGCCAAACTT--GGTA--CATAGTG-------------T-TC--ATATGTAAAA-CAT----GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TATTAAATT--AAAACT-AAATTGGATATTTGGAA-TGA-GCATGGAGTTT-TCTA--TTGTAATTG--TAAATTTCATGATCCTAGGG------GTAGAGGTTGTGGTATTAG-GATGGG-------GCC---------AAAATG--------GTC---ACTG---A-------TGA-------------A--A--T--TG--------A----TT-----TT-----------CTTCT--TGGTCACTATGAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGG-GGACATTCATTAA-A-AA-A-TT-CA-GGTTTTCTTGTA-CCC-----CAGGGGCCTT-AAG-GGTGGAGCAA-AAATTGCCAAAAAGTGACCAATTTT-AAGAAATCTTCTCT--AC---A--ACTAC----ACAT---GTGTAAT--AAAAACT-AAATAGATAGTGATATAGAGCAGG--AGGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCCGGGGTAGGGGTTCTGACCTCAGGGCGGGGC-CAAACT---TGGTACATAGTGC--TTATATGT-AAACATAT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATAAAT----AGCAAAACAAAAATTT
gi|23 : TA--TAAATTTCATGATCCCAGGG------ATA--------AGTATTCT-GATGGG-------GCC---------AAAATG--------G
gi|24 : gtcttcacagtcagTAA-GGTATCCGATCCATAAAT----AG-AAA--AAAAATT
gi|27 : GGGCAAGGGCCACATAAATTGTAAATGT-CAGGTCTTTTGCAgatacctggaaagcatatga
gi|3 : --AAAAGTGAC--CAATTTTTCAAAA---A--TCTTCTT-----CTTTAC---AACCGCAC-ATGCCTGA--GA-GAAACTA-AATGCA--TGGTGATGTAGAGCAGGAAAGGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-GTAGGG-TTCTGACACCAGGGTGGG-CCAAACTT--GGTA--CATAGTG-------------TAGT--ATGTGTAAAA-CATTTGTGAAAAACATCTT---TAAT---GCT-AT-T-GA----TAGTAAATT--AAAACT-GAAT-GGAAAATTGGAA-TGA-GCAGGGAGTAT-TCTA--TTATAATTG--TAAATTTTTTGATCCTAGGG------ATA-GGGTTTTGCTAATA--GGTGGG-------GCCAAAATGCCGAAAATG--------GTC---ATAG---A-------TGAAAATGTGTTAAACA--A--T--TGAAC-----A----TT-----TTTAG--------CTTCTTCTTATAACT-CCAG-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATCT---TT-TGGGAC-AAGGG-C-ACATAAATTGT-A-AATT-TT-CA-GG-TCTCTTGCA-CCC-----CTGGGGC--T-GGGAGGT-GGGC-A-AA-CTGCCCAAAAGTGACCAATTTT-CAAAAATCTTCTTT--AC---A--ACCGC----AC-T---GCCCGAG--AGAAACT-AAATGCATGGTGATGTAGAGCAGG--AAGGCCTCTACC--AAAATTG--TAA----------ATTTGATGATCCCT-GGATAGGGGTTCTGACTCCAGGGTGGGGC-C--ACT---TGGTACATAGTGT--AT-TGTGTAAAACATTT------GAAAAACGTC--TTCTTTAA--T-------TCTATTGAT----AGTAAATTAAAA
gi|3 : AATTCTTTTCAAATTTGGTATGAAGCATCTTTTGGGACAAGGG-CACATAAATTGTAAATTTTCAGGTCTCTTGCACCCCTGGGGCTGGGAGG--T-GGGC-A-----AA--CTGCCC--AAAAGTGAC--CAATTTT-CAAAA---A--TCTTCTT--------TAC---AACCGCAC-TGCCC-GA--GA-GAAACTA-AATGCA--TGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGATGATCCCT-GG-ATAGGGGTTCTGACTCCAGGGTGGGGCC--ACTT--GGTA--CATAGTG-------------TATT----GTGTAAAA-CA-TT-TGAAAAACGTCTTCTTTAAT---TCT-AT-T-GA----TAGTAAATT--AAAACT-GAAT-GGATAATTGGAA-TGA-GCAGGGAGTAT-TCTA---TATAATTG--TAAATTTT-TGATCCTAGGAAGACCCGTGGGGGTCCCGG-GTTAG-AATAGG-------ctgaatggataattggaatgagcagggagtattctatataattgtaaatttttgatcctaggaagacccgtgggggtcccgggttagaatagg
gi|4 : aaaagtgaccaatttttcaaaaatcttcttctttacaaccgcacatgcctgagagaaactaaatgcatggtgatgtagagcaggaaaggcctctaccaaaattgtaaatttggtgattcccggggtagggttctgacaccagggtgggccaaacttggtacatagtgtagtatgtgtaaaacatttgtgaaaaacatctttaatgctattgatagtaaattaaaactgaatggaaaattggaatgagcagggagtattctattataattgtaaattttttgatcctagggatagggttttgctaataggtggggccaaaatgccgaaaatggtcatagatgaaaatgtgttaaacaattgaacatttttagcttcttcttataactccagtccAATTCTTCTTTATATACTACCTCC------AATTTCTTTTCA-AATTGGTAT-AAGCATCTTT-GG-ACAAGG--CACATAGAGTGTTAATT--CAGGAGTCTTGCCTCCC--GGACCTTGGGGGGT-GGGG-GGGGGTAA----------AAAAGTGAC--AAATTTT-CAAAA---AAAT-TTCTT-----CTAT-C---AACCACACCAAATC-AA--GATGAAACTA-AATGCAGTTATTGATGTAGAGCAGGAA---CCTTATACCCAAAATT--GATAAATTTAGT-ATTCCTGGGTGCAGG--TTCT-ATTCCAGG-TGGGGCCAAACTT--GCTAAACATAGTG-------------T-TTTTATATGTAAAAACATC---GAATAGCAACTTCCTTA-T---GTT-ATGT-GA----TA---ACTT--GAAATTTAAAT-AGAAATTTGGAA-TGAAGCAGGAAGCCT-TTCAGACT-TAGTTT--TAA-TTTCATGA-CCTAGG--------TAGGAATTT--GTAGTAG-GGTGGG-------GCC---------AAAATG--------GTC---AGTG-----------TGA-------------A--ATGT--TT--------T----TT-----TT-----------TTTCT--TAATCACTA-AATCTCCAAT--CTTTCAA-----TGG-ATAAGGAAGCGTC----TT-T--------------------ATTGT-A-AA-T-TTCCATGATTCTCCTGCATCCC-----C---AGCTTTAAGG-GGTGGGA-----------CCAAAATTAA--AATTTT-CAAAAATCTTCTTTTAAA---A--ACTGC----ACGT----CCTAAG--AAAAACA-AAATGCATAGT-ATGTA-AACAGG--AA-GCCTCTACCAAAAAATT---TAA----------ATTTGGT
gi|6 : gtggtcgcttacaattgaaagatttaATCTT-CAAAAATCTTCTCT--AT---GTTCCTGA----ACATTTGACAC-AGCTAGAGACT-GGCTACACAGC--TGTA-ATCAGGTGAAGGCC-----C--ATAATTA--TAACCTCTAAAATATTC--TGGTCCCTGAATCCAGAATTTAGGCCCCAGACTGGAGCACTAA-T---TAGTA--TAGTGTAGTGGAAAAT-AAAAATGT------GAAAAT---C--TTCTCC---TTTACTC---CTG-AAAT----AGTAA
gi|7 : AAT---GCTCAT-TAGACATGTAATACCTT--AAAACT-AAATTGGATATTTGGAAATGA-GCAGGTA--TT-TCTT--CTATA--TA--TA----TCTTGATCCTAGT--------TA-----TTAGGTATTAGAGGTGGG-------CTA---------AAAATG--------GAT---AATGTGAA-------TGA-------------A--A--TAATGTTAATTCTA----TT-----TTGAACATTTTAACTTTC--TTGTCACTACCTT-TCCAATTC-TTTCAAATT--
gi|8 : atctcataTTTCGAATTGTCGGTAT---GA--CATTACCATT-TGGCACAGAGGG-G-A-ATA--TTGTCATAA-TATT-CA-GGACTTCTTGCT-TCCATGACTGAAGGAC----AG-GG-AGGGCAACAA-TTGTTTTAA--T-ATCACTTTTGTAAAAAAGTTTTTT--ATCATA--GCTGCTATTGCAT---ATA-AAG--ACAAATTTAGATACATTGTGATGTAGA
gi|9 : ttgc-------------A--A--T--TG--------AACA-TT-----TCAG---------CTTTT--CGATATTTATCCT-TCAAATTCTTTTAAAATT--TGGTAA---AAAGCATC----TT---------AGGGTC-ACATAAATTGT-A-AA-T-AT-CA-GA--CACATGCA-CCC-----C
gi|9 : cgtacctcagcAATTGA-ACA--T-TTCAGCTTTTCGATATTTATCCTTCAAATTCTTTTAAAATTTGGTAAAAAGCATCTT--------AGGGTCACATAAATTGTAAATAT-CAGA-CACATGCACCCCCCCCCCCCCCAAG--T-AAGTAA-----AA--ATGCCTTGGAAATTTAC--TATTTTT-CAAAA---A--ccccccccccaagtaagtaaaaatgccttggaaatttactatttttcaaaaactattcata
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAAATTATTGATTAATAAGGTTTCAAGCGCACTTTTGGACATACAGATTAGTAAGCATTATTGTGTATTTGCTTAATCTGTCATTGTAAGTAGCGATTATCCTTTCTACACTGCTTTTCCTTTAAGAAGTCTACCATTATCATGCTATATAGTGACTAACCAATTTGTAAACTCGGAAGATTGTTCTTTATTTATTTGTTTTGGTCCATAGTAATGTAGTCTAAAGGTGGCTTAAGTTTCTCGGACATCGGACATGTTCATTATGTTTAAGCAGATATGGTCTTTGGCTGGTTCAGCGGTTGTATCCTTCCCATCATACAGGTCAAAATCATATCATACAGTTGTAATTGTATTTATACTACCCATGGTCGTCATAGTCTCTATGC
Unaligned ( gi|12 ): ATGGTTTTCCGTGCGCTACTAAAAGTGTTACCCTTTCCTCCTAGAATGATACCCATACGATACATGGAGATTTGTATCCACCTATCGAATTTTGTTGGCTCCAAATAAGGTTAAGCACCATCTTAGGACAA
Unaligned ( gi|13 ): CACCCTCCAATAGCTGTTGTTAGGGAAAGGGGGGGTCAACTAGGTACTGAATCTGGACGGTAATGATCTGATCGCGAGACACATCCTGTCTGTGTAATCAGAGATGTTTTCCAGGCATGAATATGTTAG
Unaligned ( gi|15 ): AATCTTGAACGCAGCCCTGCACCCTTTGTGATATTGAAATGATAATCTTTTGTATCATATGAATATTTTGAAAGATCATAACACTCCAAATTGAGACTTAGAAATGCAAGTATGAGACT
Unaligned ( gi|16 ): CATGTCTGTCGGTCCGTCTGTAAACATAATGTATTCAGACATTAAAGTGTTAGCCTATTGACCCCAAATTCAATAGAGATATTCGACGACCCATGGGA
Unaligned ( gi|17 ): TACAGTGATTAAAATTTGTCATTGAAAACTTTTCAAATTTACTGACTATAGTATAAAAACTAAATGGATATTTACGAAAGCTGAAAAAGATGTAC
Unaligned ( gi|20 ): CCGAGAAAAACAATGCCATAGACCAGTATGTCTTAGGACTAGTAGGAAAGGTAAGTCTAATATAAAGCAAGTAACACAT
Unaligned ( gi|21 ): TGAAAGACTTCTTCTCTTTTGGTGATACTATATTAACACCAAAAAATATATATTTAAAAAAACCAAAAAGGGGGGTA
Unaligned ( gi|22 ): TGAAAGACTTCTTTATTTTGCTGATACTTATTAAAACTCAATGTGTATTTAGGAAAATCAGAAAGGGGTG
Unaligned ( gi|25 ): TCAGCGTTGTACTTTCCACATCGAGTCATCAAATCATACATGTATACA
Unaligned ( gi|26 ): AATGTCTATCTTTCCGTCTGTAAACATAATGATTTCCAGGCATTAA
Alignments
lowQualScore : 2 4444444 2 1 4444444444 11 1 11111 222 1 11 5555555555555555555555 111 1111111 22222 1 111 11111 33333333333333 222222 4444444444444444444 33333333 222 111 1 1111 111 1111111 11 3333333333333333333 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 2222 1111 333333333333333333333 2222222222 222222222222222 555555555555555555555555555555555555555555 1 2222222222 22222222222 111 11111 1 222222 3333333 111 11 2222 111
lowQualScore : 0 7777777 2 0 3 1 4444444444 22 44 7 2 11111 222 0 3 66 9 3 88 0 4444444444444444444444 444 1 6 2222222 00000 1 333 77777 999 8 99 99 6 1 6 99 99999999999999 888 6 6 99 6 3 2 7 22 555555 11 0 7 11 2 99 99 2222222222222222222 22 3 6 88888888 111 1 5 000 1 5 5 2222 6 8 77 5 5 5 5 1 555 5 5 1 5 0 99999 3 888 5555555 11 8 3 0 5 3333333333333333333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 77 1 1 22 6 1 77 111 0000 6 1 3 3333 7 6 6 888 6 6 7 6 77 666666666666666666666 6 2 1 1111111111 333333333333333 1 55 66 000000000000000000000000000000000000000000 5 1 4 1 1 777 66 66 77 5555555555 99 66666666666 0 8 6 3 444 3 55555 0 1 888888 5555555 777 3 0 11 4 1111 6 333
lowQualScore : . ....... . . . . .......... .. .. . . ..... ... . . .. . . .. . ...................... ... . . ....... ..... . ... ..... ... . .. .. . . . .. .............. ... . . .. . . . . .. ...... .. . . .. . .. .. ................... .. . . ........ ... . . ... . . . .... . . .. . . . . . ... . . . . . ..... . ... ....... .. . . . . ................... ....................................................................................... .. . . .. . . .. ... .... . . . .... . . . ... . . . . .. ..................... . . . .......... ............... . .. .. .......................................... . . . . . ... .. .. .. .......... .. ........... . . . . ... . ..... . . ...... ....... ... . . .. . .... . ...
lowQualScore : 0 0000000 5 0 3 0 3333333333 00 00 3 0 44444 555 0 2 88 8 2 77 7 0000000000000000000000 222 0 7 6666666 00000 4 666 44444 222 0 22 22 7 0 7 22 22222222222222 777 7 7 22 7 7 5 8 00 888888 44 7 5 77 5 22 22 7777777777777777777 88 2 7 55555555 333 8 0 000 4 7 7 1111 6 6 99 7 7 7 4 0 777 0 4 0 7 1 77777 9 333 9999999 99 8 4 2 0 3333333333333333333 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 99 0 3 00 7 7 99 777 8888 7 0 2 8888 2 7 7 777 7 7 8 7 77 555555555555555555555 7 5 0 3333333333 222222222222222 4 22 99 222222222222222222222222222222222222222222 0 1 5 0 9 222 99 99 99 0000000000 66 33333333333 8 0 0 2 000 2 22222 0 0 888888 0000000 000 2 2 88 0 2222 5 888
consensus : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAACATTNCAGCTCTTC-ATNTTT--A-A--ACCTNCAAATTCTTTT-AAATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCACCCCCGGN-CCTCGGGG--C-GGGN-AAA--NTGTC--GAAAAGTGAC--NAATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ATGTCTGA--GA-G-AAACTA-AA--TGCA--TGG-TGAT-GTA--GA--------------GCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATCCCCGGG------GTAGGGGTTCTGACNCCAGGGCGGGGCCAAACTT--GGTA--CATAGTG-------------T-TT--ATATGTAAAA-CA----TTT-TGAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAANTT--AAAACT-AAA-T-GGATATTTGG---AATGA-GCAGGGAGTCT-TCTA--CCGTAATTG--TAA--AT---TTCATGATCCTAGGGATAGGGGTTTTGGTATTAG-GGTGGG-------GCC---------AAAATG--------GTC---GNTG---A-------TGA-------------A--AT--TG--------A----TTT-T----------A----CTTCT--TNATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGGN-ACATAAATTGT-A-AA-T-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAA-AA-CT--GCCCAAAA------GTG---ANCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACTGC----GCAT---GCGCAAG--AN--AAACT-AGATGCATAGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
Reference ( family-1160 ) : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAG-AATTGA----TGCAA-TTTTC-ATNTTT-TANA--ANNTNNAAATTCTTTTCAAATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATTTCAGGTCTCTTGCACCCCCGGGGCCTCGGGG--T-GGGC-AAA--CTGCC--NAAAAGTGAC--CAATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-GNGTC-GA--GA-G-AAACTA-AA--TGCA--TGG-TGAT-GTA--GA--------------GCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATCCCCGGG------GTAGGGGTTCTGACNCCAGGGCGGGGCCAAACTT--GGTA--CATAGTG-------------T-TT--ACGTGTAAAA-CA----TTT-TGAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAACT-AAA-T-GGATANTTGG---AATGA-GCAGGGAGTNT-TCTA--CTATAATTG--TAA--AT---TTCATGATCCTAGGGGTAGGGGTTTTGGTATTAG-GGTGGG-------GCC---------AAAATG--------GTC---GNTG---A-------TGA-------------A--AT--TG--------A----TTT-T----------A----CTTCT--TNATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGGC-ACATAAATTGT-A-AA-T-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAA-AA-CT--GCCCAAAA------GTG---ACCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACTGC----GCAT---GCGCGAG--AN--AAACT-AGATACATAGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GNTATCCGATCTATAAAT----AGCAAAATAAAAATTT
gi|1 : TGATCCTAGGA-TAGGGGTTTTGGTATTAG-GGTGGGCCAAAATGCTGA-------AAAATG--------GTCATAGATG---AAATGTGTTAA-------------A--AT--TG--------AATA-TTTAT----------AGCTTCTTCT--TAATAACTACTAG-TC-AATTCTTTCCAAATT--TGGTAT---GAAGCATC----TTGTGGAACAAAGGGC-ACATAAATTGT-A-AA-T-TT-CA-GGTTCT-TTG-CA-CCC-----TGGGT----TCCT---GG-GGTGGG-CAA-AA-CT--GCCCAAAA------GTG---AACAATTTT-CAAAAA--T---------------------CTGT----GCAT---G-GTGAT--GT--AGAGC-AGGAA------GAC-TA--GAGCAG--GAAGACCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCC-GGG-------GTAGGGGTTCTGA-CCCAGGATGGGGC-CAAACT---TGGTACATAGTAT--TTATATGT-AAACATTTTTTTTAAAAAA----CTGTTCAGTAATGCTATTC---TTATTAATTTGCAACAAAAT-GAAATTT
gi|1 : --TGCA--TGG-TGAT-GTA--GAGCAGGAAGACTAGAGCAGGAA-GACCTC-TACC-AAAATT--G-TAAATTTGGTGAT-CCCGGG------GTAGGGGTTCTGAC-CCAGGATGGGGCCAAACTT--GGTA--CATAGTA-------------T-TT--ATATGT-AAA-CATTTTTTT-TAAAAAAC-TGTTCAGTAAT---GCT-AT-T-CT----TATTAATTT--GCAACA-AAA-T-GAA-ATTTGT---AATGA-ACATGAAGCCT-TTTA--TCTTAATTA--TAACCACCCACCCATAAT-TTAGGAAAGGGGGTACTGGAATCTG-GATGgtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|10 : tgatcctaggataggggttttggtattagggtgggccaaaatgctgaaaaatggtcatagatgaaatgtgttaaaattgaatatttatagcttcttcttaataactactagtcaattctttccaaatttggtatgaagcatcttgtggaacaaagggcacataaattgtaaatttcaggttctttgcaccctgggttcctggggtgggcaaaactgcccaaaagtgaacaattttcaaaaatctgAAAATGACTCCACCCTT-CAAAATCCA--TCCTCCTTTTTTCCTAAAAAACAC-GGGTC-AGTTGA-A-AAACCACAA--TGCA--GGA-C--T-GTA--AA--------------G----AA-AGCC-C-TACC-AA--TTCCG-AAAATGCATTCATAC---AG------CTAGGCGTTGACACCCCAGGGCGG---CAAACCTTGGGTA--CA-AGTG---------------TT--ACGTGCAAAA-tctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|11 : GGGTTTTGGTACCAGGGTATGGCCAAA-TT--GG-G--CATAGTGATTGAATGTCTTTT-TC--ACTTGTCAA------------TGAAAGAC---TTCTTTAATTTTGCTGAT-C-AA----TACTATATACAAAAACT-AAA-T-AGATAGTTAG---GAAAA-ACAGAAAG
gi|14 : TGA-GGAGG-AGTGTCTGTA--CCAAATTTGCATAA--AT---TTTAT-ATCCT--TTGTAGGGGTTTTAGC-TCCG-GGTGGG-------ACC---------AAATTGTGTGGTTTGTT---GATT---A-------TGA-------------A--A----G--------AT---TTT-T----------A----TCTTT--TAACAgggtgt
gi|14 : ct--GAGGAG--GAGTGTCTGTACC--AAATTTGCATAA----------ATTTTAT-ATCCTT--T-------GTAGGGGTTTTAGCTCC-GGGTGGGAC-CAAATTGTGTGGT
gi|18 : cttG---G-------TGA-------------ACTAT--TGC-------A----TTT-T----------AA---CTTCT--TGATAACTACCAT-TCCAATTCTTTTAAAATT--TTGTAT---GAAGTATC----TT-TGAGACAttgttgattatgaaagatttttatcttttaaca
gi|19 : taaaagaaaactcaTT-TAAAAA--TCTTCTTT--A---C---C--CCTGT----ACAG---CCTCAAGA-AA--AAACT-ATTTGTGTGGTTATGAA--GACCAC--AGAGTCCTCTGCC--A
gi|2 : cGAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAG-AAT-AA----TGCAA-TCTTT-ATGTGT-GAAA--ATGCATAAATCATTT----ATTTGGTATGAAGAATCATTGGGACAAGGAG-C-ACACAAAT-GTAAATTTCAGATCTCTTGCACCCCTGGGGCTTTGGGG--CAGGGC-AAAAACTGTC--AAAAAGTGAC--AAATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCCCAC-ATGTCTGA--GA-G-AAACTA-AA--TGCA--CAG-TGAT-GTA--GA--------------GCAGGAA-GGCCTC-TACC-AAAACT--G-TAAATTTGGTGATCCCCGGG------GTAGGGGTTATGACCCCAGGGCGGGGCCAAACTT--GGTA--CATAGTG-------------T-TC--ATATGTAAAA-CA----T----GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TATTAAATT--AAAACT-AAA-TTGGATATTTGG---AATGA-GCATGGAGTTT-TCTA--TTGTAATTG--TAA--AT---TTCATGATCCTAGGGGTAGAGGTTGTGGTATTAG-GATGGG-------GCC---------AAAATG--------GTC---ACTG---A-------TGA-------------A--AT--TG--------A----TTT-T---------------CTTCT--TGGTCACTATGAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGGGGACATTCATTAA-A-AA-A-TT-CA-GGTTTTCTTG-TA-CCC-----CAGGG----GCCTT-AAG-GGTGGAGCAA-AAATT--GCCAAAAA------GTG---ACCAATTTT-AAGAAA--TCTTCTCT--A---C---A--ACTAC----ACAT---GTGTAAT--AA--AAACT-AAATAGATAGTGATATA--GAGCAG--GAGGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCCGGG-------GTAGGGGTTCTGACCTCAGGGCGGGGC-CAAACT---TGGTACATAGTGC--TTATATGT-AAACATAT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATAAAT----AGCAAAACAAAAATTT
gi|22 : -TGAAAGAC---TTCTTTA-T---TTT-GC-T-GA----TACTTA-TT--AAAACT-CAA-T-GTGTATTTAGGAAAATCA-GAAAGGGGT
gi|23 : GTCT-TC-A--CAGTCAGTA--TAA--AT---TTCATGATCCCAGGGATA--------AGTATTCT-GATGGG-------GCC---------AAAATG--------Gg
gi|24 : TAA-GGTATCCGATCCATAAAT----AG-AAA--AAAAATT
gi|27 : GGGCAAGG-G-CCACATAAATTGTAAATGTCAGGTCTTTTGCAgatacctggaaagcatatga
gi|3 : AAAAGTGAC--CAATTTTTCAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ATGCCTGA--GA-G-AAACTA-AA--TGCA--TGG-TGAT-GTA--GA--------------GCAGGAAAGGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG------GTAGGG-TTCTGACACCAGGGTGGG-CCAAACTT--GGTA--CATAGTG-------------TAGT--ATGTGTAAAA-CA----TTTGTGAAAAACATCTT---TAAT---GCT-AT-T-GA----TAGTAAATT--AAAACT-GAA-T-GGAAAATTGG---AATGA-GCAGGGAGTAT-TCTA--TTATAATTG--TAA--AT---TTTTTGATCCTAGGGATA-GGGTTTTGCTAATA--GGTGGG-------GCCAAAATGCCGAAAATG--------GTC---ATAG---A-------TGAAAATGTGTTAAACA--AT--TG--------AACATTTT-T----------AG---CTTCTTCTTATAACT-CCAG-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATCT---TT-TGGGAC-AAGGGC-ACATAAATTGT-A-AATT-TT-CA-GG-TCTCTTG-CA-CCC-----CTGGG----GC--T-GGGAGGT-GGGC-A-AA-CT--GCCCAAAA------GTG---ACCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACCGC----AC-T---GCCCGAG--AG--AAACT-AAATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGATGATCCCT-GG-------ATAGGGGTTCTGACTCCAGGGTGGGGC-C--ACT---TGGTACATAGTGT--AT-TGTGTAAAACATTT------GAAAAACGTC--TTCTTTAA---T------TCTATTGAT----AGTAAATTAAAA
gi|3 : AAATTGT-A-AA-T-TT-GA-TGATCCCTGGATA----------GGGGTTCTGACTC-CAG-GGTGGGGCCA----CTTGGTACATAGTGTATTGTGTAAAACA--TTT-GAAAAACGTCTTCTTT--AATTC---T--ATTG-------AT---A-GTAA---ATTAAAACT-GAATGGATAAT--TGGAATGAGCAG--GGAGTATTCTAT---ATAATTG--TAA----------ATTT-TTGAT-CCTAGGAAGACCCGTGGGGGTCCCGctgaatggataattggaatgagcagggagtattctatataattgtaaatttttgatcctaggaagacccgtgggggtcccgggttagaatagg
gi|3 : aaaagtgaccaatttttcaaaaatcttcttctttacaaccgcacatgcctgagagaaactaaatgcatggtgatgtagagcaggaaaggcctctaccaaaattgtaaatttggtgattcccggggtagggttctgacaccagggtgggccaaacttggtacatagtgtagtatgtgtaaaacatttgtgaaaaacatctttaatgctattgatagtaaattaaaactgaatggaaaattggaatgagcagggagtattctattataattgtaaattttttgatcctagggatagggttttgctaataggtggggccaaaatgccgaaaatggtcatagatgaaaatgtgttaaacaattgaacatttttagcttcttcttataactccagtccaattcttttcaaatttggtatgaagcatcttttgggacaagggcacataaattgtaaattttcaggtctcttgcacccctggggctgggaggtgggcaaactgcccaaaagtgaccaattttcaaaaatcttctttacaaccgcactgcccgagagaaactaaatgcatggtgatgtagagcaggaaggcctctaccaTTT-GAAAA---A---CGTCTTCTTTA----ATTC------TATT-GA--TA-GTAAATTA-AAACTGAA--TGGATAATTGGAATGA--------------GCAGGGA-GTATTC-TAT--ATAATT--G-TAAATTT-TTGATCCTAGGAAGACCCGTGGGGGTCCCGggttagaatagg
gi|4 : aaaagtgaccaatttttcaaaaatcttcttctttacaaccgcacatgcctgagagaaactaaatgcatggtgatgtagagcaggaaaggcctctaccaaaattgtaaatttggtgattcccggggtagggttctgacaccagggtgggccaaacttggtacatagtgtagtatgtgtaaaacatttgtgaaaaacatctttaatgctattgatagtaaattaaaactgaatggaaaattggaatgagcagggagtattctattataattgtaaattttttgatcctagggatagggttttgctaataggtggggccaaaatgccgaaaatggtcatagatgaaaatgtgttaaacaattgaacatttttagcttcttcttataactccagtccaattcttttcaaatttggtatgaagcatcttttgggacaagggcacataaattgtaaattttcaggtctcttgcacccctggggctgggaggtgggcaaactgcccaaaagtgaccaattttcaaaaatcttctttacaaccgcactgcccgagagaaactaaatgcatggtgatgtagagcaggaaggcctctaccaaaattgtaaatttgatgatccctggataggggttctgactccagggtggggccacttggtacatagtgtattgtgtaaaacaTTC-TTCTTTATATACTACCTCCAATTTCTTTTCAAATT-GGTAT-AAGCATCTTTGG-ACAAGG---C-ACATAGAGTGTTAATT-CAGGAGTCTTGC-CTCCCGGA-CCTTGGGGGGT-GGGG-GGG--G-GTA--AAAAAGTGAC--AAATTTT-CAAAA---AAAT-TTCTTCTAT-C---AACCACACCAAATC-AA--GATG-AAACTA-AA--TGCAGTTAT-TGAT-GTA--GA--------------GCAGGAA---CCTTATACCCAAAATT--GATAAATTTAGT-ATTCCTGGGT-----GCAGG--TTCT-ATTCCAGG-TGGGGCCAAACTT--GCTAAACATAGTG-------------T-TTTTATATGTAAAAACA----TC---GAATAGCAACTTCCTTA-T---GTT-ATGT-GA----TA---ACTT--GAAATTTAAA-T-AGAAATTTGG---AATGAAGCAGGAAGCCT-TTCAGACT-TAGTTT--TAA---T---TTCATGA-CCTAGG--TAGGAATTT--GTAGTAG-GGTGGG-------GCC---------AAAATG--------GTC---AGTG-----------TGA-------------A--ATG-TT--------T----TTT-T----------T----TTTCT--TAATCACTA-AATCTCCAAT--CTTTCAA-----TGG-ATAAGGAAGCGTC----TT-T-------------------ATTGT-A-AA-T-TTCCATGATTCTCCTG-CATCCC-----C---A----GCTTTAAGG-GGTGGGA-------------CCAAAA------TTA---A--AATTTT-CAAAAA--TCTTCTTTTAA---A---A--ACTGC----ACGT----CCTAAG--AA--AAACA-AAATGCATAGT-ATGTA---AACAG--GAA-GCCTCTACCAAAAAATT---TAA----------ATTTGGTggttagaatagg
gi|6 : gtggtcgcttacaattgaaagatttaaaATCTT-CAAAAA--TCTTCTCT--A---T---GTTCCTGA----ACATTTGACAC-AGCTAG--AGACT-GGCTACACAGC--TGTA---ATCAGGTGAAGGC-----CC--ATAATTA--TAACCTCTAAAATATTC--TGGTCCCTGAA-------TCCAGAATTTAGGCCCCAGACTGGAGCACTAA-T---TAGT--ATAGTGTAGTGGAAAAT-AAAAATGT------GAAAAT---C--TTCT
gi|7 : AAT---GCTCAT-TAGACATGTAATACCTT--AAAACT-AAATT-GGATATTTGGA--AATGA-GCAGGTA--TT-TCTT--CTATA--TA--TA---------TCTTGATCCTA--GTTA-----TTAGGTATTAGAGGTGGG-------CTA---------AAAATG--------GAT---AATGTGAA-------TGA-------------A--ATAATGTTAATTCTA----TTT-TGAACATTTTAA----CTTTC--TTGTCACTACCTT-TCCAATTC-TTTCAAATT--cctttactcctgaaatagtaa
gi|8 : atctcataTTTCGAATTGTCGGTAT---GA--CATTACCATT-TGGCACAGAGGGG-A-ATA--TTGTCATAA-TATT-CA-GGACTTCTTG-CT-TCCATGACTGAAG----GAC---AGG-GA--GGGCAACAA-TT--GTTTTAA--------T----ATCACTTTTGTAAAAA--AGTTTTTT--A---TCATA--GCTGCTATTGCAT---ATA-AAG--AC--AAATTTAGATACATTGTGATGTA--GA
gi|9 : ttgcCTCAGCAATTGAACATTTCAGCTTTTCGATATTT----A--TCCTTCAAATTCTTTTAAAATTTGGTAAAAAGCATCTT-------AGG-GTC-ACATAAATTGTAAATATCAGA-CACATGCACCCCCCCCCCCCCCAAG--T-AAGTAAAA--ATGCCTTGGAAATTTAC--TATTTTT-CAAAA---A--
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAAATTATTGATTAATAAGGTTTCAAGCGCACTTTTGGACATACAGATTAGTAAGCATTATTGTGTATTTGCTTAATCTGTCATTGTAAGTAGCGATTATCCTTTCTACACTGCTTTTCCTTTAAGAAGTCTACCATTATCATGCTATATAGTGACTAACCAATTTGTAAACTCGGAAGATTGTTCTTTATTTATTTGTTTTGGTCCATAGTAATGTAGTCTAAAGGTGGCTTAAGTTTCTCGGACATCGGACATGTTCATTATGTTTAAGCAGATATGGTCTTTGGCTGGTTCAGCGGTTGTATCCTTCCCATCATACAGGTCAAAATCATATCATACAGTTGTAATTGTATTTATACTACCCATGGTCGTCATAGTCTCTATGC
Unaligned ( gi|12 ): ATGGTTTTCCGTGCGCTACTAAAAGTGTTACCCTTTCCTCCTAGAATGATACCCATACGATACATGGAGATTTGTATCCACCTATCGAATTTTGTTGGCTCCAAATAAGGTTAAGCACCATCTTAGGACAA
Unaligned ( gi|13 ): CACCCTCCAATAGCTGTTGTTAGGGAAAGGGGGGGTCAACTAGGTACTGAATCTGGACGGTAATGATCTGATCGCGAGACACATCCTGTCTGTGTAATCAGAGATGTTTTCCAGGCATGAATATGTTAG
Unaligned ( gi|15 ): AATCTTGAACGCAGCCCTGCACCCTTTGTGATATTGAAATGATAATCTTTTGTATCATATGAATATTTTGAAAGATCATAACACTCCAAATTGAGACTTAGAAATGCAAGTATGAGACT
Unaligned ( gi|16 ): CATGTCTGTCGGTCCGTCTGTAAACATAATGTATTCAGACATTAAAGTGTTAGCCTATTGACCCCAAATTCAATAGAGATATTCGACGACCCATGGGA
Unaligned ( gi|17 ): TACAGTGATTAAAATTTGTCATTGAAAACTTTTCAAATTTACTGACTATAGTATAAAAACTAAATGGATATTTACGAAAGCTGAAAAAGATGTAC
Unaligned ( gi|20 ): CCGAGAAAAACAATGCCATAGACCAGTATGTCTTAGGACTAGTAGGAAAGGTAAGTCTAATATAAAGCAAGTAACACAT
Unaligned ( gi|21 ): TGAAAGACTTCTTCTCTTTTGGTGATACTATATTAACACCAAAAAATATATATTTAAAAAAACCAAAAAGGGGGGTA
Unaligned ( gi|25 ): TCAGCGTTGTACTTTCCACATCGAGTCATCAAATCATACATGTATACA
Unaligned ( gi|26 ): AATGTCTATCTTTCCGTCTGTAAACATAATGATTTCCAGGCATTAA
Alignments
lowQualScore : 22 11 22 33333 1 111 1 11111 222 1 1 11 111 333333333 111 111 111111 111 1 1111 1 1 111 11 1 1 11 1 1 11 11 111 2222 5555555555555555 11 111 1 1111 1 111 2222222 22 1 3333333333333333333 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 2222 1111 333333333333333333333 2222222222 2222222222222 4444444444444444444444444444444444444 1 2222222222 22222222222 111 11111 1 222222 3333333 111 11 2222 111
lowQualScore : 6 7 88 1 22 00 1 7 88888 1 3 999 2 11111 222 0 3 0 9 3 44 999 333333333 1 999 222 1 8 666666 2 9 777 4 0 3 1111 0 0 444 0 2 2 66 3 0 0 3 33 0 8 4 22 0 00 3 5 1 5 11 111 0 5555 88 4444444444444444 66 111 3 666 4444 3 7 99 6 3 888 5 5 5 22 2222222 99 3 22 1 5 66 3333333333333333333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 77 1 1 22 6 1 77 111 0000 6 1 3 2222 7 6 6 888 6 6 7 6 77 666666666666666666666 6 2 1 1111111111 2222222222222 7 1 55 66 4444444444444444444444444444444444444 777 5 1 1 777 66 66 77 5555555555 99 66666666666 0 8 6 3 444 3 55555 0 1 888888 5555555 555 3 0 11 1 1111 6 333
lowQualScore : . . .. . .. .. . . ..... . . ... . ..... ... . . . . . .. ... ......... . ... ... . . ...... . . ... . . . .... . . ... . . . .. . . . . .. . . . .. . .. . . . . .. ... . .... .. ................ .. ... . ... .... . . .. . . ... . . . .. ....... .. . .. . . .. ................... ....................................................................................... .. . . .. . . .. ... .... . . . .... . . . ... . . . . .. ..................... . . . .......... ............. . . .. .. ..................................... ... . . . ... .. .. .. .......... .. ........... . . . . ... . ..... . . ...... ....... ... . . .. . .... . ...
lowQualScore : 7 3 33 0 77 77 0 7 77777 0 3 777 0 44444 555 0 2 8 8 2 33 000 333333333 0 000 000 0 0 000000 5 8 555 2 0 5 2222 0 0 555 2 5 5 55 2 0 0 2 88 0 8 2 88 0 00 2 0 0 0 00 888 8 0000 88 3333333333333333 44 777 3 888 2222 3 5 22 7 3 333 7 7 0 77 0000000 22 7 00 4 1 44 3333333333333333333 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 99 0 3 00 7 7 99 777 8888 7 0 2 6666 2 7 7 777 7 7 8 7 77 555555555555555555555 7 5 0 3333333333 8888888888888 5 4 22 99 5555555555555555555555555555555555555 999 0 1 9 222 99 99 99 0000000000 66 33333333333 8 0 0 2 000 2 22222 0 0 888888 0000000 000 2 2 88 0 2222 5 888
consensus : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAA--ATTTCAACTCTTC-ATNTNTA-A--ACCTNCA-AATTCTTTTAAA-TTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCACCCCCGGN-CCTC--GGGGNA-GGG---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ANGTCTGA-GA-GAAACTA-AATGCA--CGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-GTAGGGGTTNTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAA-CTAAAT-GGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTAGGGATAGGGGTTTTGGTATTAG-GGTGGG-------GCC---------AAAATG--------GTC---GNTG---A-------TGA-------------A--AT--TG--------A----TTT-T----------A----CTTCT--TNATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGGN-ACATAAATTGT-A-AA-T-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAA-AA-CT--GCCCAAAA------GTG---ANCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACTGC----GCATGCG-CA-AG--A--AAAACT-AGATGCATGGTGATGTA--GAGCAGG--AAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
Reference ( family-1160 ) : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAAC-ATTNCAGCTCTTC-ATNTTTA-A--ACCTNCA-AATTCTTTTAAA-TTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCACCCCCGGN-CCTC--GGGGCG-GGN---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ATGTCTGA-GA-GAAACTA-AATGCA--TGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATCCCCGGG-GTAGGGGTTCTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAANTT--AAAA-CTAAAT-GGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTAGGGATAGGGGTTTTGGTATTAG-GGTGGG-------GCC---------AAAATG--------GTC---GNTG---A-------TGA-------------A--AT--TG--------A----TTT-T----------A----CTTCT--TNATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGGN-ACATAAATTGT-A-AA-T-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAA-AA-CT--GCCCAAAA------GTG---ANCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACTGC----GCATGCG-CA-AG--A--NAAACT-AGATGCATAGTGATGTA--GAGCAGG--AAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
gi|1 : TGATCCTAGG-ATAGGGGTTTTGGTATTAG-GGTGGGCCAAAATGCTGA-------AAAATG--------GTCATAGATG---AAATGTGTTAA-------------A--AT--TG--------AATA-TTTAT----------AGCTTCTTCT--TAATAACTACTAG-TC-AATTCTTTCCAAATT--TGGTAT---GAAGCATC----TTGTGGAACAAAGGGC-ACATAAATTGT-A-AA-T-TT-CA-GGTTCT-TTG-CA-CCC-----TGGGT----TCCT---GG-GGTGGG-CAA-AA-CT--GCCCAAAA------GTG---AACAATTTT-CAAAAA--T---------------------CTGT----GCATG-G-T---G--A--TG---T-AGA-GCAGGAAGAC-TA--GAGCAGG--AAGACCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCC-GGG-------GTAGGGGTTCTGA-CCCAGGATGGGGC-CAAACT---TGGTACATAGTAT--TTATATGT-AAACATTTTTTTTAAAAAA----CTGTTCAGTAATGCTATTC---TTATTAATTTGCAACAAAAT-GAAATTT
gi|10 : AAAATGACTCCACCCTT-CAAAATCCA--TCCTCCTTTTTTCCTAAAAAACAC-GGGTCAGTTGA-AAAACCACAATGCA--GGAC--TGTAAAG----AA-AGCC-C-TACC-AA--TTCCG-AAAATGCATTCATAC---AG-CTAGGCGTTGACACCCCAGGGCGG---CAAACCTTGGGT--ACA-AGTG----TTACGTGC-AAAAgtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|11 : GGGTTTTGGTACCAGGGTATGGCCAAA-TT--GG---GCATAGTG--A-TTGAATGT-----CTTTT-TCACTTGTCAATGAAAGAC---TTCTTTAATTTTGCTGAT-C-AA----TACTATATACAAAAA-CTAAAT-AGATAGTTAG---GAAA-AACAGA-AA-G
gi|14 : TG-AGGAGGAGT-GTCTG-TA-CCAAATTTGCATAAATTTTAT-ATCCTTTG--TAGGGGTTTTAGC-TCCG-GGTGGG-------ACC---------AAATTGTGTGGTTTGTT---GATT---A-------TGA-------------A--A----G--------AT---TTT-T----------A----TCTTT--TAACAgggtgt
gi|14 : ct--GAGGAGG--AGTGTCTGTACC--AAATTTGCATAA----------ATTTTAT-ATCCTT--T-------GTAGGGGTTTTAGCTCC-GGGTGGGAC-CAAATTGTGTGGT
gi|18 : cttG---G-------TGA-------------ACTAT--TGC-------A----TTT-T----------AA---CTTCT--TGATAACTACCAT-TCCAATTCTTTTAAAATT--TTGTAT---GAAGTATC----TT-TGAGACAttgttgattatgaaagatttttatcttttaaca
gi|19 : taaaagaaaactcaTT-TAAAAA--TCTTCTTT--A---C---C--CCTGT----ACAGCCT-CA-AGA-A--AAAACT-ATTTGTGTGGTTATGAA--GACCACA--GAGTCCTCTGCC--A
gi|2 : cGAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAG-AAT--AA----TGCAA-TCTTT-ATGTGTG-A--AAATGCATAAATCATTTA---TTTGGTATGAAGAATCATTGGGACAAGGAG-C-ACACAAAT-GTAAATTTCAGATCTCTTGCACCCCTGGGGCTTT--GGGGCA-GGGCAAAAACTGTC--AAAAAGTGACA--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCCCAC-ATGTCTGA-GA-GAAACTA-AATGCA--CAGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAACT--G-TAAATTTGGTGATCCCCGGG-GTAGGGGTTATGACCCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TCATATGT-AAAACAT---------------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TATTAAATT--AAAA-CTAAATTGGATATTTGG---AATG-AGCATG-GA-GTTTTCTA-TTGTAATTG--TAAATTTCATGATCCTAGGGGTAGAGGTTGTGGTATTAG-GATGGG-------GCC---------AAAATG--------GTC---ACTG---A-------TGA-------------A--AT--TG--------A----TTT-T---------------CTTCT--TGGTCACTATGAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TGGGACAAAGGGGGACATTCATTAA-A-AA-A-TT-CA-GGTTTTCTTG-TA-CCC-----CAGGG----GCCTT-AAG-GGTGGAGCAA-AAATT--GCCAAAAA------GTG---ACCAATTTT-AAGAAA--TCTTCTCT--A---C---A--ACTAC----ACATGTG-TA-AT--A--AAAACT-AAATAGATAGTGATATA--GAGCAGG--AGGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCCGGG-------GTAGGGGTTCTGACCTCAGGGCGGGGC-CAAACT---TGGTACATAGTGC--TTATATGT-AAACATAT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATAAAT----AGCAAAACAAAAATTT
gi|22 : -T-----------GAAAGAC---TTCTTTA-T---TTT-GC-T-GA----TACTTA-TT--AAAA-CTCAAT-GTGTATTTAGGAAAATC-AGAAAG-GG-GT
gi|23 : -GTCTTC-A-CAGTCAGTA--TAAATTTCATGATCCCAGGGATA--------AGTATTCT-GATGGG-------GCC---------AAAATG--------Gg
gi|24 : TAA-GGTATCCGATCCATAAAT----AG-AAA--AAAAATT
gi|27 : GGGCAAGG-G-CCACATAAATTGTAAATGTCAGGTCTTTTGCAgatacctggaaagcatatga
gi|3 : AAAAGTGACC--AATTTTTCAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ATGCCTGA-GA-GAAACTA-AATGCA--TGGTGATGTAGAGCAGGAAAGGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-GTAGGG-TTCTGACACCAGGGTGGG-CCAAACTT--GGT--ACATAGTG--TAGTATGTGT-AAAACATTTGT-----------GAAAAACATCTT---TAAT---GCT-AT-T-GA----TAGTAAATT--AAAA-CTGAAT-GGAAAATTGG---AATG-AGCAGG-GA-GTATTCTA-TTATAATTG--TAAATTTTTTGATCCTAGGGATA-GGGTTTTGCTAATA--GGTGGG-------GCCAAAATGCCGAAAATG--------GTC---ATAG---A-------TGAAAATGTGTTAAACA--AT--TG--------AACATTTT-T----------AG---CTTCTTCTTATAACT-CCAG-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATCT---TT-TGGGAC-AAGGGC-ACATAAATTGT-A-AATT-TT-CA-GG-TCTCTTG-CA-CCC-----CTGGG----GC--T-GGGAGGT-GGGC-A-AA-CT--GCCCAAAA------GTG---ACCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACCGC----AC-TGCC-CG-AG--A--GAAACT-AAATGCATGGTGATGTA--GAGCAGG--AAGGCCTCTACC--AAAATTG--TAA----------ATTTGATGATCCCT-GG-------ATAGGGGTTCTGACTCCAGGGTGGGGC-C--ACT---TGGTACATAGTGT--AT-TGTGTAAAACATTT------GAAAAACGTC--TTCTTTAA---T------TCTATTGAT----AGTAAATTAAAA
gi|3 : AAATTGT-A-AA-T-TT-GA-TGATCCCTGGATA----------GGGGTTCTGACTC-CAG-GGTGGGGCCA----CTTGGTACATAGTGTATTGTGTAAAACA--TTT-GAAAAACGTCTTCTTT--AATTC---T--ATTG-------ATA-G-TA-A---ATTAAAACT-GAATGGATAAT--TGGAATGAGCAGG--GAGTATTCTA-T--ATAATTG--TAA----------ATTT-TTGAT-CCTAGGAAGACCCGTGGGGGTCCCGctgaatggataattggaatgagcagggagtattctatataattgtaaatttttgatcctaggaagacccgtgggggtcccgggttagaatagg
gi|4 : aaaagtgaccaatttttcaaaaatcttcttctttacaaccgcacatgcctgagagaaactaaatgcatggtgatgtagagcaggaaaggcctctaccaaaattgtaaatttggtgattcccggggtagggttctgacaccagggtgggccaaacttggtacatagtgtagtatgtgtaaaacatttgtgaaaaacatctttaatgctattgatagtaaattaaaactgaatggaaaattggaatgagcagggagtattctattataattgtaaattttttgatcctagggatagggttttgctaataggtggggccaaaatgccgaaaatggtcatagatgaaaatgtgttaaacaattgaacatttttagcttcttcttataactccagtccaattcttttcaaatttggtatgaagcatcttttgggacaagggcacataaattgtaaattttcaggtctcttgcacccctggggctgggaggtgggcaaactgcccaaaagtgaccaattttcaaaaatcttctttacaaccgcactgcccgagagaaactaaatgcatggtgatgtagagcaggaaggcctctaccaCAATTGAAAGATTTAAATTCTTC--TTTATATACTACCTCCA-ATTTCTTTTCAA-ATTGGTAT-AAGCATCTTTGG-ACAAGG---C-ACATAGAGTGTTAAT-TCAGGAGTCTTGC-CTCCCGGA-CCTT--GGGGGGTGGG---GGGGGGTA--AAAAAGTGACA--AATTTT-CAAAA---AAAT-TTCTTCTAT-C---AACCACACCAAATC-AA-GATGAAACTA-AATGCAGTTATTGATGTAGAGCAGGAA---CCTTATACCCAAAATT--GATAAATTTAGT-ATTCCTGGGTGCAGG--TTCT-ATTCCAGG-TGGGGCCAAACTT--GCTAAACATAGTGTTT-TTATATGTAAAAACA--T-C-----------GAATAGCAACTTCCTT-AT---GTT-ATGT-GA-------TAACTT--GAAATTTAAAT-AGAAATTTGG---AATGAAGCAGG-AA-GCCTTTCAGACTTAGTTT--T-AATTTCATGA-CCTAGG--TAGGAATTT--GTAGTAG-GGTGGG-------GCC---------AAAATG--------GTC---AGTG-----------TGA-------------A--ATG-TT--------T----TTT-T----------T----TTTCT--TAATCACTA-AATCTCCAAT--CTTTCAA-----TGG-ATAAGGAAGCGTC----TT-T-------------------ATTGT-A-AA-T-TTCCATGATTCTCCTG-CATCCC-----C---A----GCTTTAAGG-GGTGGGA-------------CCAAAA------TTA---A--AATTTT-CAAAAA--TCTTCTTTTAA---A---A--ACTGC----ACGT-CC-TA-AG--A--AAAACA-AAATGCATAGT-ATGTA---AACAGG--AA-GCCTCTACCAAAAAATT---TAA----------ATTTGGTggttagaatagg
gi|6 : gtggtcgcttaATCTT-CAAAAA--TCTTCTCT--A---T---GTTCCTGA----ACATTTGACACAGCTA--GAGACT-GGCTACACAGC--TGTA---ATCAGGTGAAGGCC-----C--ATAATTA--TAACCTCTAAAATATTC--TGGTCCCTGAA-------TCCAGAATTTAGGCCCCAGACTGGAGCACTAA-T---TAGT--ATAGTGTAGTGGAAAAT-AAAAATGT------GAAAAT---C--TTCT
gi|7 : AAT---GCTCAT-TAGACATGTAATACCTT--AAAA-CTAAATTGGATATTTGGA--AATG-AGCAGG-TATTTCTTCTA--------TA--TATATCT--TGATCCTAGT--TA-----TTAGGTATTAGAGGTGGG-------CTA---------AAAATG--------GAT---AATGTGAA-------TGA-------------A--ATAATGTTAATTCTA----TTT-TGAACATTTTAA----CTTTC--TTGTCACTACCTT-TCCAATTC-TTTCAAATT--cctttactcctgaaatagtaa
gi|8 : atctcataTTTCGAATTGTCGGTAT---GA--CATTACCATT-TGGCACAGAGGGG-A-ATA--TTGTCATAA-TATT-CA-GGACTTCTTG-CT-TCCATGACTGAAG----GAC---AGG-GA--GGGCAACAA-TT--GTTTTAA--------T----ATCACTTTTGTAAAAA--AGTTTTTT--A---TCATA--GCTGCTATTGCATATA--A-AG--A--CAAATTTAGATACATTGTGATGTA--GA
gi|9 : ttgcCTCAGCAATTGAAC-ATTTCAGCTTTTCGATATTTA-T---CCTTCA-AATTCTTTTAAAATTTGGTAAAAAGCATCTT-------AGG-GTC-ACATAAATTGTAAATATCAGA-CACATGCACCCCCCCC-CCCCCCAAGTAA-GTA---AAAATGCCTTGGAAATTTACT--ATTTTT-CAAAA---A--
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAAATTATTGATTAATAAGGTTTCAAGCGCACTTTTGGACATACAGATTAGTAAGCATTATTGTGTATTTGCTTAATCTGTCATTGTAAGTAGCGATTATCCTTTCTACACTGCTTTTCCTTTAAGAAGTCTACCATTATCATGCTATATAGTGACTAACCAATTTGTAAACTCGGAAGATTGTTCTTTATTTATTTGTTTTGGTCCATAGTAATGTAGTCTAAAGGTGGCTTAAGTTTCTCGGACATCGGACATGTTCATTATGTTTAAGCAGATATGGTCTTTGGCTGGTTCAGCGGTTGTATCCTTCCCATCATACAGGTCAAAATCATATCATACAGTTGTAATTGTATTTATACTACCCATGGTCGTCATAGTCTCTATGC
Unaligned ( gi|12 ): ATGGTTTTCCGTGCGCTACTAAAAGTGTTACCCTTTCCTCCTAGAATGATACCCATACGATACATGGAGATTTGTATCCACCTATCGAATTTTGTTGGCTCCAAATAAGGTTAAGCACCATCTTAGGACAA
Unaligned ( gi|13 ): CACCCTCCAATAGCTGTTGTTAGGGAAAGGGGGGGTCAACTAGGTACTGAATCTGGACGGTAATGATCTGATCGCGAGACACATCCTGTCTGTGTAATCAGAGATGTTTTCCAGGCATGAATATGTTAG
Unaligned ( gi|15 ): AATCTTGAACGCAGCCCTGCACCCTTTGTGATATTGAAATGATAATCTTTTGTATCATATGAATATTTTGAAAGATCATAACACTCCAAATTGAGACTTAGAAATGCAAGTATGAGACT
Unaligned ( gi|16 ): CATGTCTGTCGGTCCGTCTGTAAACATAATGTATTCAGACATTAAAGTGTTAGCCTATTGACCCCAAATTCAATAGAGATATTCGACGACCCATGGGA
Unaligned ( gi|17 ): TACAGTGATTAAAATTTGTCATTGAAAACTTTTCAAATTTACTGACTATAGTATAAAAACTAAATGGATATTTACGAAAGCTGAAAAAGATGTAC
Unaligned ( gi|20 ): CCGAGAAAAACAATGCCATAGACCAGTATGTCTTAGGACTAGTAGGAAAGGTAAGTCTAATATAAAGCAAGTAACACAT
Unaligned ( gi|21 ): TGAAAGACTTCTTCTCTTTTGGTGATACTATATTAACACCAAAAAATATATATTTAAAAAAACCAAAAAGGGGGGTA
Unaligned ( gi|25 ): TCAGCGTTGTACTTTCCACATCGAGTCATCAAATCATACATGTATACA
Unaligned ( gi|26 ): AATGTCTATCTTTCCGTCTGTAAACATAATGATTTCCAGGCATTAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1 22 33333 1 111 1 11111 222 1 1 111 11 1 222 111 111 111111 111 1 1111 1 1 111 11 1 1 11 1 1 1 1 11 11 111 2222 5555555555555555 11 111 1 1111 1 111 2222222 22 1111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 1111 1111 1 333333333333333333333 222222222222 2222222222222 444444444444444444444444444444444444444444 1 2222222222 22222222222 111 11111 1 222222 3333333 111 11 2222 111
lowQualScore : 6 7 2222 7 2 00 1 1 88888 1 3 999 2 11111 222 0 3 0 9 777 44 0 1 3 333 1 999 222 1 8 666666 2 9 777 4 0 1 1111 0 0 888 0 2 2 66 3 0 0 3 33 0 3 0 5 0 0 00 1 5 1 5 11 111 0 5555 88 4444444444444444 66 111 3 666 4444 3 7 99 6 3 888 5 5 5 22 2222222 99 3 22 9999 5 5 1 8888888 77 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 888 1 22 6 1 77 111 4444 6 6 1 5 2222 7 6 6 6 3 6 1 6 77 666666666666666666666 6 999999999999 2222222222222 7 1 55 66 777777777777777777777777777777777777777777 5 1 1 1 777 66 66 77 5555555555 99 66666666666 0 8 6 3 444 3 55555 0 1 888888 5555555 555 3 0 11 1 1111 6 333
lowQualScore : . . .... . . .. . . ..... . . ... . ..... ... . . . . ... .. . . . ... . ... ... . . ...... . . ... . . . .... . . ... . . . .. . . . . .. . . . . . . .. . . . . .. ... . .... .. ................ .. ... . ... .... . . .. . . ... . . . .. ....... .. . .. .... . . . ....... .. ........................................................................................ ... . .. . . .. ... .... . . . . .... . . . . . . . . .. ..................... . ............ ............. . . .. .. .......................................... . . . . ... .. .. .. .......... .. ........... . . . . ... . ..... . . ...... ....... ... . . .. . .... . ...
lowQualScore : 7 3 7777 3 0 77 0 0 77777 0 3 777 0 44444 555 0 2 8 8 000 33 7 0 3 333 0 000 000 0 0 000000 5 8 555 2 0 0 2222 0 0 000 2 5 5 55 2 0 0 2 88 0 2 2 0 0 0 00 0 0 0 0 00 888 8 0000 88 3333333333333333 44 777 3 888 2222 3 2 22 7 3 333 7 7 0 77 0000000 22 7 00 7777 1 7 7 6666666 99 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 999 3 00 7 7 99 777 2222 7 7 0 6 6666 2 7 7 7 3 7 7 7 77 555555555555555555555 7 000000000000 8888888888888 5 4 22 99 000000000000000000000000000000000000000000 0 1 1 9 222 99 99 99 0000000000 66 33333333333 8 0 0 2 000 2 22222 0 0 888888 0000000 000 2 2 88 0 2222 5 888
consensus : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAA-A--TTTCAACTCTTC-ATNTNTA-A--ACCTNCA-AATTCTTTT-AAATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCA--CCCCCGGN-CCTCGGGGNA-GGG---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ANGTCTGA-GA-GAAACTA-AATGCA--CGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGGGTTNTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAA-CTAAAT-GGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTAGGGATAGGGGTTTTGGTATTAG-GGTGGG-------GCC--AAAATG---------GTC---GNTG---A-------TGAA--A-------------T--TG--------A----TTT-T----------A----CTTCTTN--ATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGGN-ACATAAATTGT-A-AAT-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAA-AA-CT--GCCCAAAA------GTG---ANCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACTGC----GCATGCG-CA-A-G--A--AAAACT-AGATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
Reference ( family-1160 ) : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAA-A--TTTCAACTCTTC-ATNTNTA-A--ACCTNCA-AATTCTTTT-AAATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCA--CCCCCGGN-CCTCGGGGNA-GGG---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ANGTCTGA-GA-GAAACTA-AATGCA--CGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGGGTTNTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAA-CTAAAT-GGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTAGGGATAGGGGTTTTGGTATTAG-GGTGGG-------GCC--AAAATG---------GTC---GNTG---A-------TGAA--A-------------T--TG--------A----TTT-T----------A----CTTCTTN--ATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGGN-ACATAAATTGT-A-AAT-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAA-AA-CT--GCCCAAAA------GTG---ANCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACTGC----GCATGCG-CA-A-G--A--AAAACT-AGATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
gi|1 : TGATCCTAGG-ATAGGGGTTTTGGTATTAG-GGTGGGCCAAAATGCTGAAAAATG---------GTCATAGATG---AAATGTGTTAAA--A-------------T--TG--------AATA-TTTAT----------AGCTTCTTCTTA--ATAACTACTAG-TC-AATTCTTTCCAAATT--TGGTAT---GAAGCATC----TTGT-GGAACAAAGGGC-ACATAAATTGT-A-AAT-TT-CA-GGTTCT-TTG-CA-CCC-----TGGGT----TCCT---GG-GGTGGG-CAA-AA-CT--GCCCAAAA------GTG---AACAATTTT-CAAAAA--T---------------------CTGT----GCATG-G-TG-ATG----------T-AGA-GCAGGAAGAC-TA--GAGCAG--GAAGACCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCC-GGG-------GTAGGGGTTCTGA-CCCAGGATGGGGC-CAAACT---TGGTACATAGTAT--TTATATGT-AAACATTTTTTTTAAAAAA----CTGTTCAGTAATGCTATTC---TTATTAATTTGCAACAAAAT-GAAATTT
gi|10 : AAAATGACTCCACCCTT-CAAAATCCA--TCCTCCTTTTTTCCTAAAAAACAC-GGGTCAGTTGA-AAAACCACAATGCA--GGAC--TGTAAAG----AA-AGCC-C-TACC-AA--TTCCG-AAAAT---GC-ATTCATACA-GCTAGGCGTTGACACCCCAGGGCGG---CAAACCTTGGGT--ACA-AGTG----TTACGTGC-AAAAgtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|11 : GGGTTTTGGTACCAGGGTATGGCCAAA-TT--GG---GCATAGTG--A-TTGAATGT-----CTTTT-TCACTTGTCAATGAAAGAC---TTCTTTAATTTTGCTGAT-C-AA----TACTATATACAAAAA-CTAAAT-AGATAGTTAG---GAAA-AACAGA-AA-G
gi|14 : TG-AGGAGGAGT-GTCTG-TA-CCAAATTTGCATAAATTTTAT-ATCCTTTG--TAGGGGTTTTAGC-TCCG-GGTGGG-------ACC--AAATTGTGTGGTTT-GTT---GATT---A-------TGAA--A-----------------G--------AT---TTT-T----------A----TCTTTTA--ACAgggtgt
gi|14 : ct--GAGGAG--GAGTGTCTGTACC--AAATTTGCATAA----------ATTTTAT-ATCCTT--T-------GTAGGGGTTTTAGCTCC-GGGTGGGAC-CAAATTGTGTGGT
gi|18 : cttG---G-------TGAACTA-------------T--TGC-------A----TTT-T----------AA---CTTCTTG--ATAACTACCAT-TCCAATTCTTTTAAAATT--TTGTAT---GAAGTATC----TT-T-GAGACAttgttgattatgaaagatttttatcttttaaca
gi|19 : taaaagaaaactcaTT-TAAAAA--TCTTCTTT--A---C---C--CCTGT----ACAGCCT-CA-A-GA-A--AAAACT-ATTTGTGTGGTTATGAA--GACCAC--AGAGTCCTCTGCC--A
gi|2 : cGAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAG-AAT---A-A--TG-CAA-TCTTT-ATGTGTG-A--AAATGCATAAATCATTT-A--TTTGGTATGAAGAATCATTGGGACAAGGAG-C-ACACAAAT-GTAAATTTCAGATCTCTTGCA--CCCCTGGGGCTTTGGGGCA-GGGCAAAAACTGTC--AAAAAGTGACA--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCCCAC-ATGTCTGA-GA-GAAACTA-AATGCA--CAGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAACT--G-TAAATTTGGTGATCCCCGGG-G-TAGGGGTTATGACCCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TCATATGT-AAAACAT---------------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TATTAAATT--AAAA-CTAAATTGGATATTTGG---AATG-AGCATG-GA-GTTTTCTA-TTGTAATTG--TAAATTTCATGATCCTAGGGGTAGAGGTTGTGGTATTAG-GATGGG-------GCC--AAAATG---------GTC---ACTG---A-------TGAA--A-------------T--TG--------A----TTT-T---------------CTTCTTG--GTCACTATGAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGGGGACATTCATTAA-A-AAA-TT-CA-GGTTTTCTTG-TA-CCC-----CAGGG----GCCTT-AAG-GGTGGAGCAA-AAATT--GCCAAAAA------GTG---ACCAATTTT-AAGAAA--TCTTCTCT--A---C---A--ACTAC----ACATGTG-TA-A-T--A--AAAACT-AAATAGATAGTGATATA--GAGCAG--GAGGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCCGGG-------GTAGGGGTTCTGACCTCAGGGCGGGGC-CAAACT---TGGTACATAGTGC--TTATATGT-AAACATAT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATAAAT----AGCAAAACAAAAATTT
gi|22 : -T-----------GAAAGAC---TTCTTTA-T---TTT-GC-T-GA----TACTTA-TT--AAAA-CTCAAT-GTGTATTTAGGAAAATC-AGAAAG-GG-GT
gi|23 : -GTCTTC-A-CAGTCAGTA--TAAATTTCATGATCCCAGGGATA--------AGTATTCT-GATGGG-------GCC--AAAATG---------Gg
gi|24 : TAA-GGTATCCGATCCATAAAT----AG-AAA--AAAAATT
gi|27 : GGGCAAGG-G-CCACATAAATTGTAAATGTCAGGTCTTTTGCA--gatacctggaaagcatatga
gi|3 : AAAAGTGACC--AATTTTTCAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ATGCCTGA-GA-GAAACTA-AATGCA--TGGTGATGTAGAGCAGGAAAGGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGG-TTCTGACACCAGGGTGGG-CCAAACTT--GGT--ACATAGTG--TAGTATGTGT-AAAACATTTGT-----------GAAAAACATCTT---TAAT---GCT-AT-T-GA----TAGTAAATT--AAAA-CTGAAT-GGAAAATTGG---AATG-AGCAGG-GA-GTATTCTA-TTATAATTG--TAAATTTTTTGATCCTAGGGATAGGG-TTTTGCTAATAG-G-TGGG-------GCC--AAAATGCCGAAAATGGTC---ATAG---A-------TGAA--AATGTGTTAAACAAT--TG--------AACATTTT-T----------AG---CTTCTTCTTATAACT-CCAG-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TTGGGACAA-GGGC-ACATAAATTGT-A-AAT-TTTCA-GGT-CTCTTG-CA-CCC-----CTGGG----GC--T-GGGAGGTGGG-CAA-A--CT--GCCCAAAA------GTG---ACCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACCGC----AC-TGCC-CG-A-G--A--GAAACT-AAATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGATGATCCCT-GG-------ATAGGGGTTCTGACTCCAGGGTGGGGC-C--ACT---TGGTACATAGTGT--AT-TGTGTAAAACATTT------GAAAAACGTC--TTCTTTAA---T------TCTATTGAT----AGTAAATTAAAA
gi|3 : AAATTGT-A-AAT-TT-GA-TGATCCCTGGATA----------GGGGTTCTGACTC-CAG-GGTGGGGCCA----CTTGGTACATAGTGTATTGTGTAAAACA--TTT-GAAAAACGTCTTCTTT--AATTC---T--ATTG-------ATA-G-TA-A----ATTAAAACT-GAATGGATAAT--TGGAATGAGCAG--GGAGTATTCTAT---ATAATTG--TAA----------ATTT-TTGAT-CCTAGGAAGACCCGTGGGGGTCCCGctgaatggataattggaatgagcagggagtattctatataattgtaaatttttgatcctaggaagacccgtgggggtcccgggttagaatagg
gi|4 : aaaagtgaccaatttttcaaaaatcttcttctttacaaccgcacatgcctgagagaaactaaatgcatggtgatgtagagcaggaaaggcctctaccaaaattgtaaatttggtgattcccggggtagggttctgacaccagggtgggccaaacttggtacatagtgtagtatgtgtaaaacatttgtgaaaaacatctttaatgctattgatagtaaattaaaactgaatggaaaattggaatgagcagggagtattctattataattgtaaattttttgatcctagggatagggttttgctaataggtggggccaaaatgccgaaaatggtcatagatgaaaatgtgttaaacaattgaacatttttagcttcttcttataactccagtccaattcttttcaaatttggtatgaagcatcttttgggacaagggcacataaattgtaaattttcaggtctcttgcacccctggggctgggaggtgggcaaactgcccaaaagtgaccaattttcaaaaatcttctttacaaccgcactgcccgagagaaactaaatgcatggtgatgtagagcaggaaggcctctaccaCAATTGAA-AGATTTAAATTCTTC--TTTATATACTACCTCCA-ATTTCTTTT-CAAATTGGTAT-AAGCATCTTTGG-ACAAGG---C-ACATAGAGTGTTAAT-TCAGGAGTCTTGC---CTCCCGGA-CCTTGGGGGGTGGG---GGGGGGTA--AAAAAGTGACA--AATTTT-CAAAA---AAAT-TTCTTCTAT-C---AACCACACCAAATC-AA-GATGAAACTA-AATGCAGTTATTGATGTAGAGCAGGAA---CCTTATACCCAAAATT--GATAAATTTAGT-ATTCCTGGGTG-CAGG--TTCT-ATTCCAGG-TGGGGCCAAACTT--GCTAAACATAGTGTTT-TTATATGTAAAAACA--T-C-----------GAATAGCAACTTCCTT-AT---GTT-ATGT-GA-------TAACTT--GAAATTTAAAT-AGAAATTTGG---AATGAAGCAGG-AA-GCCTTTCAGACTTAGTTT--T-AATTTCATGA-CCTAGG--TAGGAATTT--GTAGTAG-GGTGGG-------GCC--AAAATG---------GTC---AGTG-----------TGAA--A-------------TG-TT--------T----TTT-T----------T----TTTCTTA--ATCACTA-AATCTCCAAT--CTTTCAA-----TGG-ATAAGGAAGCGTC----TT-T--------------------ATTGT-A-AAT-TTCCATGATTCTCCTG-CATCCC-----C---A----GCTTTAAGG-GGTGGGA-------------CCAAAA------TTA---A--AATTTT-CAAAAA--TCTTCTTTTAA---A---A--ACTGC----ACGT-CC-TA-A-G--A--AAAACA-AAATGCATAGT-ATGTA---AACAG--GAA-GCCTCTACCAAAAAATT---TAA----------ATTTGGTggttagaatagg
gi|6 : gtggtcgcttaATCTT-CAAAAA--TCTTCTCT--A---T---GTTCCTGA----ACATTTGACACA-GCTA--GAGACT-GGCTACACAGC--TGTA---ATCAGGTGAAGGC-----CC--ATAATTA--TAACCTCTAAAATATTC--TGGTCCCTGAA-------TCCAGAATTTAGGCCCCAGACTGGAGCACTAA-T---TAGT--ATAGTGTAGTGGAAAAT-AAAAATGT------GAAAAT---C--TTCT
gi|7 : AAT---GCTCAT-TAGACATGTAATACCTT--AAAA-CTAAATTGGATATTTGGA--AATG-AGCAGG-TATTTCTTCTA--------TA--TATATCT--TGATCCTAGT--TA-----TTAGGTATTAGAGGTGGG-------CTA--AAAATG---------GAT---AATGTGAA-------TGAA--A-------------TAATGTTAATTCTA----TTT-TGAACATTTTAA----CTTTCTT--GTCACTACCTT-TCCAATTC-TTTCAAATT--cctttactcctgaaatagtaa
gi|8 : atctcataTTTCGAATTGTCGGTAT---GA--CATTACCATT-T-GGCACAGAGGGG-A-ATA--TTGTCATAATATT-CA-GGACTTCTTG-CT-TCCATGACTGAAG----GAC---AGG-GA--GGGCAACAA-TT--GTTTTAA--------T----ATCACTTTTGTAAAAA--AGTTTTTT--A---TCATA--GCTGCTATTGCATATA--A-A-G--A--CAAATTTAGATACATTGTGATGTA--GA
gi|9 : ttgcCTCAGCAATTGAACA--TTTCAGCTTTTCGATATTTA-T---CCTTCA-AATTCTTTTAAAATTTGGTAAAAAGCATCTT-------AGG-GTC-ACATAAATTGTAAATATCAGA-CACATGCACCCCCCCCCC-CCCCAAGTAA-GTA---AAAATGCCTTGGAAATTTACT--ATTTTT-CAAAA---A--
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAAATTATTGATTAATAAGGTTTCAAGCGCACTTTTGGACATACAGATTAGTAAGCATTATTGTGTATTTGCTTAATCTGTCATTGTAAGTAGCGATTATCCTTTCTACACTGCTTTTCCTTTAAGAAGTCTACCATTATCATGCTATATAGTGACTAACCAATTTGTAAACTCGGAAGATTGTTCTTTATTTATTTGTTTTGGTCCATAGTAATGTAGTCTAAAGGTGGCTTAAGTTTCTCGGACATCGGACATGTTCATTATGTTTAAGCAGATATGGTCTTTGGCTGGTTCAGCGGTTGTATCCTTCCCATCATACAGGTCAAAATCATATCATACAGTTGTAATTGTATTTATACTACCCATGGTCGTCATAGTCTCTATGC
Unaligned ( gi|12 ): ATGGTTTTCCGTGCGCTACTAAAAGTGTTACCCTTTCCTCCTAGAATGATACCCATACGATACATGGAGATTTGTATCCACCTATCGAATTTTGTTGGCTCCAAATAAGGTTAAGCACCATCTTAGGACAA
Unaligned ( gi|13 ): CACCCTCCAATAGCTGTTGTTAGGGAAAGGGGGGGTCAACTAGGTACTGAATCTGGACGGTAATGATCTGATCGCGAGACACATCCTGTCTGTGTAATCAGAGATGTTTTCCAGGCATGAATATGTTAG
Unaligned ( gi|15 ): AATCTTGAACGCAGCCCTGCACCCTTTGTGATATTGAAATGATAATCTTTTGTATCATATGAATATTTTGAAAGATCATAACACTCCAAATTGAGACTTAGAAATGCAAGTATGAGACT
Unaligned ( gi|16 ): CATGTCTGTCGGTCCGTCTGTAAACATAATGTATTCAGACATTAAAGTGTTAGCCTATTGACCCCAAATTCAATAGAGATATTCGACGACCCATGGGA
Unaligned ( gi|17 ): TACAGTGATTAAAATTTGTCATTGAAAACTTTTCAAATTTACTGACTATAGTATAAAAACTAAATGGATATTTACGAAAGCTGAAAAAGATGTAC
Unaligned ( gi|20 ): CCGAGAAAAACAATGCCATAGACCAGTATGTCTTAGGACTAGTAGGAAAGGTAAGTCTAATATAAAGCAAGTAACACAT
Unaligned ( gi|21 ): TGAAAGACTTCTTCTCTTTTGGTGATACTATATTAACACCAAAAAATATATATTTAAAAAAACCAAAAAGGGGGGTA
Unaligned ( gi|25 ): TCAGCGTTGTACTTTCCACATCGAGTCATCAAATCATACATGTATACA
Unaligned ( gi|26 ): AATGTCTATCTTTCCGTCTGTAAACATAATGATTTCCAGGCATTAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1 22 33333 1 111 1 11111 222 1 1 111 11 1 222 111 111 111111 111 1 1111 1 1 111 11 1 1 11 1 1 1 1 11 11 111 2222 5555555555555555 11 111 1 1111 1 111 2222222 22 1111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 1111 1111 1 333333333333333333333 222222222222 2222222222222 444444444444444444444444444444444444444444 1 2222222222 22222222222 111 11111 1 222222 3333333 111 11 2222 111
lowQualScore : 6 7 2222 7 2 00 1 1 88888 1 3 999 2 11111 222 0 3 0 9 777 44 0 1 3 333 1 999 222 1 8 666666 2 9 777 4 0 1 1111 0 0 888 0 2 2 66 3 0 0 3 33 0 3 0 5 0 0 00 1 5 1 5 11 111 0 5555 88 4444444444444444 66 111 3 666 4444 3 7 99 6 3 888 5 5 5 22 2222222 99 3 22 9999 5 5 1 8888888 77 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 888 1 22 6 1 77 111 4444 6 6 1 5 2222 7 6 6 6 3 6 1 6 77 666666666666666666666 6 999999999999 2222222222222 7 1 55 66 777777777777777777777777777777777777777777 5 1 1 1 777 66 66 77 5555555555 99 66666666666 0 8 6 3 444 3 55555 0 1 888888 5555555 555 3 0 11 1 1111 6 333
lowQualScore : . . .... . . .. . . ..... . . ... . ..... ... . . . . ... .. . . . ... . ... ... . . ...... . . ... . . . .... . . ... . . . .. . . . . .. . . . . . . .. . . . . .. ... . .... .. ................ .. ... . ... .... . . .. . . ... . . . .. ....... .. . .. .... . . . ....... .. ........................................................................................ ... . .. . . .. ... .... . . . . .... . . . . . . . . .. ..................... . ............ ............. . . .. .. .......................................... . . . . ... .. .. .. .......... .. ........... . . . . ... . ..... . . ...... ....... ... . . .. . .... . ...
lowQualScore : 7 3 7777 3 0 77 0 0 77777 0 3 777 0 44444 555 0 2 8 8 000 33 7 0 3 333 0 000 000 0 0 000000 5 8 555 2 0 0 2222 0 0 000 2 5 5 55 2 0 0 2 88 0 2 2 0 0 0 00 0 0 0 0 00 888 8 0000 88 3333333333333333 44 777 3 888 2222 3 2 22 7 3 333 7 7 0 77 0000000 22 7 00 7777 1 7 7 6666666 99 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 999 3 00 7 7 99 777 2222 7 7 0 6 6666 2 7 7 7 3 7 7 7 77 555555555555555555555 7 000000000000 8888888888888 5 4 22 99 000000000000000000000000000000000000000000 0 1 1 9 222 99 99 99 0000000000 66 33333333333 8 0 0 2 000 2 22222 0 0 888888 0000000 000 2 2 88 0 2222 5 888
consensus : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAA-A--TTTCAACTCTTC-ATNTNTA-A--ACCTNCA-AATTCTTTT-AAATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCA--CCCCCGGN-CCTCGGGGNA-GGG---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ANGTCTGA-GA-GAAACTA-AATGCA--CGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGGGTTNTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAA-CTAAAT-GGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTAGGGATAGGGGTTTTGGTATTAG-GGTGGG-------GCC--AAAATG---------GTC---GNTG---A-------TGAA--A-------------T--TG--------A----TTT-T----------A----CTTCTTN--ATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGGN-ACATAAATTGT-A-AAT-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAA-AA-CT--GCCCAAAA------GTG---ANCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACTGC----GCATGCG-CA-A-G--A--AAAACT-AGATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
Reference ( family-1160 ) : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAA-A--TTTCAACTCTTC-ATNTNTA-A--ACCTNCA-AATTCTTTT-AAATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCA--CCCCCGGN-CCTCGGGGNA-GGG---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ANGTCTGA-GA-GAAACTA-AATGCA--CGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGGGTTNTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAA-CTAAAT-GGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTAGGGATAGGGGTTTTGGTATTAG-GGTGGG-------GCC--AAAATG---------GTC---GNTG---A-------TGAA--A-------------T--TG--------A----TTT-T----------A----CTTCTTN--ATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGGN-ACATAAATTGT-A-AAT-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAA-AA-CT--GCCCAAAA------GTG---ANCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACTGC----GCATGCG-CA-A-G--A--AAAACT-AGATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
gi|1 : TGATCCTAGG-ATAGGGGTTTTGGTATTAG-GGTGGGCCAAAATGCTGAAAAATG---------GTCATAGATG---AAATGTGTTAAA--A-------------T--TG--------AATA-TTTAT----------AGCTTCTTCTTA--ATAACTACTAG-TC-AATTCTTTCCAAATT--TGGTAT---GAAGCATC----TTGT-GGAACAAAGGGC-ACATAAATTGT-A-AAT-TT-CA-GGTTCT-TTG-CA-CCC-----TGGGT----TCCT---GG-GGTGGG-CAA-AA-CT--GCCCAAAA------GTG---AACAATTTT-CAAAAA--T---------------------CTGT----GCATG-G-TG-ATG----------T-AGA-GCAGGAAGAC-TA--GAGCAG--GAAGACCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCC-GGG-------GTAGGGGTTCTGA-CCCAGGATGGGGC-CAAACT---TGGTACATAGTAT--TTATATGT-AAACATTTTTTTTAAAAAA----CTGTTCAGTAATGCTATTC---TTATTAATTTGCAACAAAAT-GAAATTT
gi|10 : AAAATGACTCCACCCTT-CAAAATCCA--TCCTCCTTTTTTCCTAAAAAACAC-GGGTCAGTTGA-AAAACCACAATGCA--GGAC--TGTAAAG----AA-AGCC-C-TACC-AA--TTCCG-AAAAT---GC-ATTCATACA-GCTAGGCGTTGACACCCCAGGGCGG---CAAACCTTGGGT--ACA-AGTG----TTACGTGC-AAAAgtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|11 : GGGTTTTGGTACCAGGGTATGGCCAAA-TT--GG---GCATAGTG--A-TTGAATGT-----CTTTT-TCACTTGTCAATGAAAGAC---TTCTTTAATTTTGCTGAT-C-AA----TACTATATACAAAAA-CTAAAT-AGATAGTTAG---GAAA-AACAGA-AA-G
gi|14 : TG-AGGAGGAGT-GTCTG-TA-CCAAATTTGCATAAATTTTAT-ATCCTTTG--TAGGGGTTTTAGC-TCCG-GGTGGG-------ACC--AAATTGTGTGGTTT-GTT---GATT---A-------TGAA--A-----------------G--------AT---TTT-T----------A----TCTTTTA--ACAgggtgt
gi|14 : ct--GAGGAG--GAGTGTCTGTACC--AAATTTGCATAA----------ATTTTAT-ATCCTT--T-------GTAGGGGTTTTAGCTCC-GGGTGGGAC-CAAATTGTGTGGT
gi|18 : cttG---G-------TGAACTA-------------T--TGC-------A----TTT-T----------AA---CTTCTTG--ATAACTACCAT-TCCAATTCTTTTAAAATT--TTGTAT---GAAGTATC----TT-T-GAGACAttgttgattatgaaagatttttatcttttaaca
gi|19 : taaaagaaaactcaTT-TAAAAA--TCTTCTTT--A---C---C--CCTGT----ACAGCCT-CA-A-GA-A--AAAACT-ATTTGTGTGGTTATGAA--GACCAC--AGAGTCCTCTGCC--A
gi|2 : cGAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAG-AAT---A-A--TG-CAA-TCTTT-ATGTGTG-A--AAATGCATAAATCATTT-A--TTTGGTATGAAGAATCATTGGGACAAGGAG-C-ACACAAAT-GTAAATTTCAGATCTCTTGCA--CCCCTGGGGCTTTGGGGCA-GGGCAAAAACTGTC--AAAAAGTGACA--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCCCAC-ATGTCTGA-GA-GAAACTA-AATGCA--CAGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAACT--G-TAAATTTGGTGATCCCCGGG-G-TAGGGGTTATGACCCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TCATATGT-AAAACAT---------------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TATTAAATT--AAAA-CTAAATTGGATATTTGG---AATG-AGCATG-GA-GTTTTCTA-TTGTAATTG--TAAATTTCATGATCCTAGGGGTAGAGGTTGTGGTATTAG-GATGGG-------GCC--AAAATG---------GTC---ACTG---A-------TGAA--A-------------T--TG--------A----TTT-T---------------CTTCTTG--GTCACTATGAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGGGGACATTCATTAA-A-AAA-TT-CA-GGTTTTCTTG-TA-CCC-----CAGGG----GCCTT-AAG-GGTGGAGCAA-AAATT--GCCAAAAA------GTG---ACCAATTTT-AAGAAA--TCTTCTCT--A---C---A--ACTAC----ACATGTG-TA-A-T--A--AAAACT-AAATAGATAGTGATATA--GAGCAG--GAGGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCCGGG-------GTAGGGGTTCTGACCTCAGGGCGGGGC-CAAACT---TGGTACATAGTGC--TTATATGT-AAACATAT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATAAAT----AGCAAAACAAAAATTT
gi|22 : -T-----------GAAAGAC---TTCTTTA-T---TTT-GC-T-GA----TACTTA-TT--AAAA-CTCAAT-GTGTATTTAGGAAAATC-AGAAAG-GG-GT
gi|23 : -GTCTTC-A-CAGTCAGTA--TAAATTTCATGATCCCAGGGATA--------AGTATTCT-GATGGG-------GCC--AAAATG---------Gg
gi|24 : TAA-GGTATCCGATCCATAAAT----AG-AAA--AAAAATT
gi|27 : GGGCAAGG-G-CCACATAAATTGTAAATGTCAGGTCTTTTGCA--gatacctggaaagcatatga
gi|3 : AAAAGTGACC--AATTTTTCAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ATGCCTGA-GA-GAAACTA-AATGCA--TGGTGATGTAGAGCAGGAAAGGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGG-TTCTGACACCAGGGTGGG-CCAAACTT--GGT--ACATAGTG--TAGTATGTGT-AAAACATTTGT-----------GAAAAACATCTT---TAAT---GCT-AT-T-GA----TAGTAAATT--AAAA-CTGAAT-GGAAAATTGG---AATG-AGCAGG-GA-GTATTCTA-TTATAATTG--TAAATTTTTTGATCCTAGGGATAGGG-TTTTGCTAATAG-G-TGGG-------GCC--AAAATGCCGAAAATGGTC---ATAG---A-------TGAA--AATGTGTTAAACAAT--TG--------AACATTTT-T----------AG---CTTCTTCTTATAACT-CCAG-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TTGGGACAA-GGGC-ACATAAATTGT-A-AAT-TTTCA-GGT-CTCTTG-CA-CCC-----CTGGG----GC--T-GGGAGGTGGG-CAA-A--CT--GCCCAAAA------GTG---ACCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACCGC----AC-TGCC-CG-A-G--A--GAAACT-AAATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGATGATCCCT-GG-------ATAGGGGTTCTGACTCCAGGGTGGGGC-C--ACT---TGGTACATAGTGT--AT-TGTGTAAAACATTT------GAAAAACGTC--TTCTTTAA---T------TCTATTGAT----AGTAAATTAAAA
gi|3 : AAATTGT-A-AAT-TT-GA-TGATCCCTGGATA----------GGGGTTCTGACTC-CAG-GGTGGGGCCA----CTTGGTACATAGTGTATTGTGTAAAACA--TTT-GAAAAACGTCTTCTTT--AATTC---T--ATTG-------ATA-G-TA-A----ATTAAAACT-GAATGGATAAT--TGGAATGAGCAG--GGAGTATTCTAT---ATAATTG--TAA----------ATTT-TTGAT-CCTAGGAAGACCCGTGGGGGTCCCGctgaatggataattggaatgagcagggagtattctatataattgtaaatttttgatcctaggaagacccgtgggggtcccgggttagaatagg
gi|4 : aaaagtgaccaatttttcaaaaatcttcttctttacaaccgcacatgcctgagagaaactaaatgcatggtgatgtagagcaggaaaggcctctaccaaaattgtaaatttggtgattcccggggtagggttctgacaccagggtgggccaaacttggtacatagtgtagtatgtgtaaaacatttgtgaaaaacatctttaatgctattgatagtaaattaaaactgaatggaaaattggaatgagcagggagtattctattataattgtaaattttttgatcctagggatagggttttgctaataggtggggccaaaatgccgaaaatggtcatagatgaaaatgtgttaaacaattgaacatttttagcttcttcttataactccagtccaattcttttcaaatttggtatgaagcatcttttgggacaagggcacataaattgtaaattttcaggtctcttgcacccctggggctgggaggtgggcaaactgcccaaaagtgaccaattttcaaaaatcttctttacaaccgcactgcccgagagaaactaaatgcatggtgatgtagagcaggaaggcctctaccaCAATTGAA-AGATTTAAATTCTTC--TTTATATACTACCTCCA-ATTTCTTTT-CAAATTGGTAT-AAGCATCTTTGG-ACAAGG---C-ACATAGAGTGTTAAT-TCAGGAGTCTTGC---CTCCCGGA-CCTTGGGGGGTGGG---GGGGGGTA--AAAAAGTGACA--AATTTT-CAAAA---AAAT-TTCTTCTAT-C---AACCACACCAAATC-AA-GATGAAACTA-AATGCAGTTATTGATGTAGAGCAGGAA---CCTTATACCCAAAATT--GATAAATTTAGT-ATTCCTGGGTG-CAGG--TTCT-ATTCCAGG-TGGGGCCAAACTT--GCTAAACATAGTGTTT-TTATATGTAAAAACA--T-C-----------GAATAGCAACTTCCTT-AT---GTT-ATGT-GA-------TAACTT--GAAATTTAAAT-AGAAATTTGG---AATGAAGCAGG-AA-GCCTTTCAGACTTAGTTT--T-AATTTCATGA-CCTAGG--TAGGAATTT--GTAGTAG-GGTGGG-------GCC--AAAATG---------GTC---AGTG-----------TGAA--A-------------TG-TT--------T----TTT-T----------T----TTTCTTA--ATCACTA-AATCTCCAAT--CTTTCAA-----TGG-ATAAGGAAGCGTC----TT-T--------------------ATTGT-A-AAT-TTCCATGATTCTCCTG-CATCCC-----C---A----GCTTTAAGG-GGTGGGA-------------CCAAAA------TTA---A--AATTTT-CAAAAA--TCTTCTTTTAA---A---A--ACTGC----ACGT-CC-TA-A-G--A--AAAACA-AAATGCATAGT-ATGTA---AACAG--GAA-GCCTCTACCAAAAAATT---TAA----------ATTTGGTggttagaatagg
gi|6 : gtggtcgcttaATCTT-CAAAAA--TCTTCTCT--A---T---GTTCCTGA----ACATTTGACACA-GCTA--GAGACT-GGCTACACAGC--TGTA---ATCAGGTGAAGGC-----CC--ATAATTA--TAACCTCTAAAATATTC--TGGTCCCTGAA-------TCCAGAATTTAGGCCCCAGACTGGAGCACTAA-T---TAGT--ATAGTGTAGTGGAAAAT-AAAAATGT------GAAAAT---C--TTCT
gi|7 : AAT---GCTCAT-TAGACATGTAATACCTT--AAAA-CTAAATTGGATATTTGGA--AATG-AGCAGG-TATTTCTTCTA--------TA--TATATCT--TGATCCTAGT--TA-----TTAGGTATTAGAGGTGGG-------CTA--AAAATG---------GAT---AATGTGAA-------TGAA--A-------------TAATGTTAATTCTA----TTT-TGAACATTTTAA----CTTTCTT--GTCACTACCTT-TCCAATTC-TTTCAAATT--cctttactcctgaaatagtaa
gi|8 : atctcataTTTCGAATTGTCGGTAT---GA--CATTACCATT-T-GGCACAGAGGGG-A-ATA--TTGTCATAATATT-CA-GGACTTCTTG-CT-TCCATGACTGAAG----GAC---AGG-GA--GGGCAACAA-TT--GTTTTAA--------T----ATCACTTTTGTAAAAA--AGTTTTTT--A---TCATA--GCTGCTATTGCATATA--A-A-G--A--CAAATTTAGATACATTGTGATGTA--GA
gi|9 : ttgcCTCAGCAATTGAACA--TTTCAGCTTTTCGATATTTA-T---CCTTCA-AATTCTTTTAAAATTTGGTAAAAAGCATCTT-------AGG-GTC-ACATAAATTGTAAATATCAGA-CACATGCACCCCCCCCCC-CCCCAAGTAA-GTA---AAAATGCCTTGGAAATTTACT--ATTTTT-CAAAA---A--
blockSeqs : C T AGA T T GA T A TACTA C . AAA A TGGA GT C T G T ACC A G T . G TTG A A T AAA C A . C C T TGA T . GTT G C AG T A C A . A T G T . GG T G A G . TAA TTT AA TTTGT AT . C GT CATG T A . T T GAA A A T CT GACTTAG . C GG GGGG T A G . . CCGAAAATGGTCATAGATGAAAATGTGTTAAACAATTGAACATTTTTAG CTT A CC C T GT AAG ACCA . T G A GGAC C C T A T T T A TC GGGGTTCTGACTCC A GCAAAAATT GTGTATTGTGTAA C A GT CG ATGTTCCTGAACATTTGACACAGCTAG T T G T ATG GT AA CA CCTCTAAAAT TA TAGGAAGACCC A A T GTG A AGTGG A A . ACGTC GG A GA A . C ACA
blockSeqs : C T CA T C . A T T T . CA . . G . T A A A C A . . A A C A . A C A . G . T TGA . . C G C G T . . A . . T G . . GG A G C G . T TA A TC AT . . TA . C A . . T A . . . CT TTGTAA . C GA GAGG T . A . . GATAATGTGAATGAAATAATGTTAATTCTATTTTGAACATTTTAA A A TG . T . . . . . G A CAC A . . . C . T . C ATGACTGAAGGACA . GCAACAATT AGTG C A T . ATCATAGCTGCTATTGCATATAAAGAC . A A G G . . . . GG CGGG . A C . A TTA . T . TC GG A GA A . T TTA
blockSeqs : . . T . . . A A . A . . . A . A AA . . T G C . T . . A . . T . . . G C G A G . T A A T AA . . T . G C . . . . . . . TC CAGTCA . T GA GGAA T . A . . TGTGGTTTGTTGATTATGAAAGATTTTTA G C CC . T . . . . . G . GA A . . . . . T . C CAGGGGCCTTA . GCCACTTG AGTG A A A . ACCCCTGTACAGCCTCAAGAAA . A G G G . . . . GA TGAA . T C . . AT . G . C . . . T . . A
blockSeqs : T T . A . C . T . . . T . . . . T . A C . . . . . . . CT TTATAA . C . GGG A . G . . GTCAGTGTGAAATGTTTTTTTT G A CC . C . . . . . C . . . . . . . . C . T CTGGGGCTG . CAAACT ATTA T A C . TAAAAACTGCACGTCCTAAGAA . A A G G . . . . GG TGG . . . .
blockSeqs : . . T . . . . . . . . . . C . . . . . . . G . . GTCACTGATGAAATTGATTTT A C A . . . . . . . . . . . . . . . . . CAGCTTTAA . A T . C G . ACAACTACACATGTGTAATAA . A A . G . . . . T TT
blockSeqs : . . . . . . . . . . T C . . C . AATTCTATTGATAGTAAATTA . G A . G . . . . .
blockSeqs : . C . ACAACCGCACTGCCCGAGAG . G T . . . .
blockSeqs : .
blockSeqCons : N** A***** ** T*** AT *** ** CT ** G* ******* ** G*** GCAAATT***** ANNNCTGCACATNCGCAANAA********************* TGGG*******
originalCons : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAA-A--TTTCAACTCTTC-ATNTNTA-A--ACCTNCA-AATTCTTTT-AAATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCA--CCCCCGGN-CCTCGGGGNA-GGG---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ANGTCTGA-GA-GAAACTA-AATGCA--CGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGGGTTNTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAA-CTAAAT-GGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTAGGGATAGGGGTTTTGGTATTAG-GGTGGG-------GCC--AAAATG---------GTC---GNTG---A-------TGAA--A-------------T--TG--------A----TTT-T----------A----CTTCTTN--ATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGGN-ACATAAATTGT-A-AAT-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAA-AA-CT--GCCCAAAA------GTG---ANCAATTTT-CAAAAA--TCTTCTTT--A---C---A--ACTGC----GCATGCG-CA-A-G--A--AAAACT-AGATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
finalCons : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAA-A--TTTCAACTCTTC-ATNTNTA-A--ACCTNCA-AATTCTTTT-AAATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCA--CCCCCGGN-CCTCGGGGNA-GGG---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAAA-----TCTTCTTCTTTAC---AACCGCAC-ANGTCTGA-GA-GAAACTA-AATGCA--CGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGGGTTNTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTGT---TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAA-CTAAAT-GGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTAGGG-TAGGGGTTTTGGTATTAG-GGTGGG-------GCC--AAAATG---------GTC---GNTG---A-------TGAA--A-------------T--TG--------A----TTT-T----------A----CTTCTTN--ATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGGG---ATAAATTGT-A-AAT-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGCAAATT-----GCCCAAAA------GTG---ANCAATTTT-CAAAAA--TCTTCTTTANNNCTGCACATNCGCAANAA---------------------AAACT-AGATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAAATTATTGATTAATAAGGTTTCAAGCGCACTTTTGGACATACAGATTAGTAAGCATTATTGTGTATTTGCTTAATCTGTCATTGTAAGTAGCGATTATCCTTTCTACACTGCTTTTCCTTTAAGAAGTCTACCATTATCATGCTATATAGTGACTAACCAATTTGTAAACTCGGAAGATTGTTCTTTATTTATTTGTTTTGGTCCATAGTAATGTAGTCTAAAGGTGGCTTAAGTTTCTCGGACATCGGACATGTTCATTATGTTTAAGCAGATATGGTCTTTGGCTGGTTCAGCGGTTGTATCCTTCCCATCATACAGGTCAAAATCATATCATACAGTTGTAATTGTATTTATACTACCCATGGTCGTCATAGTCTCTATGC
Unaligned ( gi|12 ): ATGGTTTTCCGTGCGCTACTAAAAGTGTTACCCTTTCCTCCTAGAATGATACCCATACGATACATGGAGATTTGTATCCACCTATCGAATTTTGTTGGCTCCAAATAAGGTTAAGCACCATCTTAGGACAA
Unaligned ( gi|13 ): CACCCTCCAATAGCTGTTGTTAGGGAAAGGGGGGGTCAACTAGGTACTGAATCTGGACGGTAATGATCTGATCGCGAGACACATCCTGTCTGTGTAATCAGAGATGTTTTCCAGGCATGAATATGTTAG
Unaligned ( gi|15 ): AATCTTGAACGCAGCCCTGCACCCTTTGTGATATTGAAATGATAATCTTTTGTATCATATGAATATTTTGAAAGATCATAACACTCCAAATTGAGACTTAGAAATGCAAGTATGAGACT
Unaligned ( gi|16 ): CATGTCTGTCGGTCCGTCTGTAAACATAATGTATTCAGACATTAAAGTGTTAGCCTATTGACCCCAAATTCAATAGAGATATTCGACGACCCATGGGA
Unaligned ( gi|17 ): TACAGTGATTAAAATTTGTCATTGAAAACTTTTCAAATTTACTGACTATAGTATAAAAACTAAATGGATATTTACGAAAGCTGAAAAAGATGTAC
Unaligned ( gi|20 ): CCGAGAAAAACAATGCCATAGACCAGTATGTCTTAGGACTAGTAGGAAAGGTAAGTCTAATATAAAGCAAGTAACACAT
Unaligned ( gi|21 ): TGAAAGACTTCTTCTCTTTTGGTGATACTATATTAACACCAAAAAATATATATTTAAAAAAACCAAAAAGGGGGGTA
Unaligned ( gi|25 ): TCAGCGTTGTACTTTCCACATCGAGTCATCAAATCATACATGTATACA
Unaligned ( gi|26 ): AATGTCTATCTTTCCGTCTGTAAACATAATGATTTCCAGGCATTAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333 1 22 33333 1 22 1 11111 222 1 1 111 1 1 222 111 111 111111 111 1 1111 1 1 111 11 1 1 11 1 1 1 1 11 11 111 2222 5555555555555555 11 111 1 1111 1 111 2222222 11111 1111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 1111 4444444444 1 333333333333333333333 22222222 33333333333 22222222222 222222222222 11111 1 2222222222 22222222222 111 11111 1 222222 3333333 111 11 2222 111
lowQualScore : 6 7 9999 2 00 1 1 88888 1 3 88 2 11111 222 0 9 0 9 777 3 1 0 1 3 333 1 999 222 1 8 666666 2 9 777 4 0 1 1111 0 0 888 0 2 2 66 3 0 0 3 33 0 3 0 5 0 0 00 1 5 1 5 11 111 0 5555 88 5555555555555555 66 111 3 666 4444 3 7 99 6 3 888 5 5 5 22 2222222 99 3 44444 9999 5 5 1 8888888 77 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 888 1 22 6 1 77 111 4444 6 6 1 0000000000 6 6 6 3 6 1 6 77 666666666666666666666 6 00000000 1 1 00000000000 7 1 55 66 44444444444 2 777777777777 0 22222 1 1 1 777 66 66 77 5555555555 99 66666666666 0 8 6 3 444 3 55555 0 1 888888 5555555 555 3 0 11 1 1111 6 333
lowQualScore : . . .... . .. . . ..... . . .. . ..... ... . . . . ... . . . . . ... . ... ... . . ...... . . ... . . . .... . . ... . . . .. . . . . .. . . . . . . .. . . . . .. ... . .... .. ................ .. ... . ... .... . . .. . . ... . . . .. ....... .. . ..... .... . . . ....... .. ........................................................................................ ... . .. . . .. ... .... . . . .......... . . . . . . . .. ..................... . ........ . . ........... . . .. .. ........... . ............ . ..... . . . ... .. .. .. .......... .. ........... . . . . ... . ..... . . ...... ....... ... . . .. . .... . ...
lowQualScore : 7 3 0000 0 77 0 0 77777 0 3 77 0 44444 555 0 2 8 8 000 3 0 7 0 3 333 0 000 000 0 0 000000 5 8 555 2 0 0 2222 0 0 000 2 5 5 55 2 0 0 2 88 0 2 2 0 0 0 00 0 0 0 0 00 888 8 0000 88 5555555555555555 44 777 3 888 2222 3 2 22 7 3 333 7 7 0 77 0000000 22 7 44444 7777 1 7 7 6666666 99 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 999 3 00 7 7 99 777 2222 7 7 0 3333333333 7 7 7 3 7 7 7 77 555555555555555555555 7 00000000 0 0 22222222222 5 4 22 99 88888888888 2 888888888888 9 55555 1 1 9 222 99 99 99 0000000000 66 33333333333 8 0 0 2 000 2 22222 0 0 888888 0000000 000 2 2 88 0 2222 5 888
consensus : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAA-A--TTTCAACTCTTC-ATNTNTA-A--ACCTNCA-AATTCTTTT--AATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCA--CCCCC-GGNCCTCGGGGNA-GGG---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ANGTCTGA-GA-GAAACTA-AATGCA--CGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGGGTTNTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAA-CTAAA-TGGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTA-GGG-TAGGGGTTTTGGTATTAG-GGTGGG-------GCC--AAAATG---------GTC---GNTG---A-------TGAA--A-------------T--TG--------A----TTT-T----------A----CTTCTTN--ATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGG--G---ATAAATTGT-A-AAT-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGC--AA--ATTGCCCAAAAGTG----------ANCAATTTT-CAAAAA--TCTTCTTT--A--CNA---CTGCACAT---NCGCA-A-TAAAAAC-----TAGATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
Reference ( family-1160 ) : GAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAGCAATTGAA-A--TTTCAACTCTTC-ATNTNTA-A--ACCTNCA-AATTCTTTT-AAATTTGGTATGAAGCATCTTTGGGACAAGG-G-C-ACATAAATTGTAAATNTCAGGTCTCTTGCA--CCCCC-GGNCCTCGGGGNA-GGG---AAANTGTC--GAAAAGTGACN--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ANGTCTGA-GA-GAAACTA-AATGCA--CGGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGGGTTNTGACNCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TTATATGT-AAAACATTT-T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TANTAAATT--AAAA-CTAAA-TGGATATTTGG---AATG-AGCAGG-GA-GTCTTCTA-CCGTAATTG--TAAATTTCATGATCCTA-GGG-TAGGGGTTTTGGTATTAG-GGTGGG-------GCC--AAAATG---------GTC---GNTG---A-------TGAA--A-------------T--TG--------A----TTT-T----------A----CTTCTTN--ATAACTACCAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGG--G---ATAAATTGT-A-AAT-TT-CA-GGTTCTCTTG-CA-CCC-----CGGGG----GCCTT-AGG-GGTGGGGC--AA--ATTGCCCAAAAGTG----------ANCAATTTT-CAAAAA--TCTTCTTT--A--NNN---CTGCACAT---NCGCA-A-NAAAAAC-----TAGATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCTGGG-------GTAGGGGTTCTGACCCCAGGGTGGGGC-CAAACT---TGGTACATAGTGT--TTATATGT-AAACATNT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATNAAT----AGCAAAATAAAAATTT
gi|1 : TGATCCTA-GGA-TAGGGGTTTTGGTATTAG-GGTGGGCCAAAATGCTGAAAAATG---------GTCATAGATG---AAATGTGTTAAA--A-------------T--TG--------AATA-TTTAT----------AGCTTCTTCTTA--ATAACTACTAG-TC-AATTCTTTCCAAATT--TGGTAT---GAAGCATC----TTGT-GGAACAAAGGGCAC---ATAAATTGT-A-AAT-TT-CA-GGTTCT-TTG-CA-CCC-----TGGGT----TCCT---GG-GGTGGGCA--AA--ACTGCCCAAAAGTG----------AACAATTTT-CAAAAA--T------------------CTGTGCAT---G-GTG-A-TG----------TAGA-GCAGGAAGAC-TA--GAGCAG--GAAGACCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCC-GGG-------GTAGGGGTTCTGA-CCCAGGATGGGGC-CAAACT---TGGTACATAGTAT--TTATATGT-AAACATTTTTTTTAAAAAA----CTGTTCAGTAATGCTATTC---TTATTAATTTGCAACAAAAT-GAAATTT
gi|10 : AAAATGACTCCACCCTT-CAAAATCCA--TCCTCCTTTTTTCCTAAAAAACAC-GGGTCAGTTGA-AAAACCACAATGCA--GGAC--TGTAAAG----AA-AGCC-C-TACC-AA--TTCCG-AAAAT---GC-ATTCATACA-GCTAGGCGTTGACACCCCAGGGCGG---CAAACCTTGGGT--ACA-AGTG----TTACGTGC-AAAAgtaatgaacatgaagccttttatcttaattataaccacccacccataatttaggaaagggggtactggaatctggatgtctgtcggtctgtctgtaaacagaatgctttccaggcattaaagtgttagcctttccacccagagttaccatatcaggcatatgatctacccatgggatgaagatgttccttatcgaattttgggttcaaaggtcaagcgcacttgacaacaaagaatcaatatgtttgcaggttctagagcattatcctttctacgtcgagtcaccatttcatgcatatagactacccttgaacaaagatgttctttattatgtttgggtcgaaaggtcaaatgcactggacatcaaagtagcgatatggtttcttggctttcagcgttttactttccacatcgagtcaattcatatcatacatgtatataactacccatgggtcgtcgaagaatctctattgaatttggggtcaaaggtgtcaagcccaccgggcattaaagtagcaatatggatttcatttttaattttgaatggataacaacaccctttgtgagattgaaatgataatcttgtgtatttgaataggaatcatatgcatattttggaagatgataacatatgaacacacccctattgagaattaaaaatgcaaatatgagactccctgtatgggcttctaatactcaggtga
gi|11 : GGGTTTTGGTACCAGGGTATGGCCAAA-TT--GG---GCATAGTG--A-TTGAATGT-----CTTTT-TCACTTGTCAATGAAAGAC---TTCTTTAATTTTGCTGAT-C-AA----TACTATATACAAAAA-CTAAA-TAGATAGTTAG---GAAA-AACAGA-AA-G
gi|14 : TG-AGGAGGAGT-GTCTG-TA-CCAAATTTGCATAAATTTTAT-ATCCT--TTG-TAGGGGTTTTAGC-TCCG-GGTGGG-------ACC--AAATTGTGTGGTTT-GTT---GATT---A-------TGAA--A-----------------G--------AT---TTT-T----------A----TCTTTTA--ACAgggtgt
gi|14 : ct--GAGGAG--GAGTGTCTGTACC--AAATTTGCATAA----------ATTTTAT-ATCCTT--T-------GTAGGGGTTTTAGCTCC-GGGTGGGAC-CAAATTGTGTGGT
gi|18 : cttG---G-------TGAACTA-------------T--TGC-------A----TTT-T----------AA---CTTCTTG--ATAACTACCAT-TCCAATTCTTTTAAAATT--TTGTAT---GAAGTATC----TT-T-GAGACAttgttgattatgaaagatttttatcttttaaca
gi|19 : taaaagaaaactcaTT-TAAAAA--TCTTCTTT--A--CCC---CTGTACAG---CCTCA-AGAAAAAAC-----TATTTGTGTGGTTATGAA--GACCAC--AGAGTCCTCTGCC--A
gi|2 : cGAGTACAAAAATTGTGAATTTTATGGTGTTTGCCCTCTTTGGAAACTCAGGAATATGGGTGAAACTTCTCAG-AAT--AA-----TGCAA-TCTTT-ATGTGTG-A--AAATGCATAAATCATTT---ATTTGGTATGAAGAATCATTGGGACAAGGAG-C-ACACAAA-TGTAAATTTCAGATCTCTTGCA--CCCCTGGGGCTTTGGGGCA-GGGCAAAAACTGTC--AAAAAGTGACA--AATTTT-CAAAA---A--TCTTCTTCTTTAC---AACCCCAC-ATGTCTGA-GA-GAAACTA-AATGCA--CAGTGATGTAGAGCAGGAA-GGCCTC-TACC-AAAACT--G-TAAATTTGGTGATCCCCGGG-G-TAGGGGTTATGACCCCAGGGCGGGGCCAAACTT--GGT--ACATAGTG--T-TCATATGT-AAAACA----T-----------GAAAAACATCTTCTTTAAT---GCT-AT-T-GA----TATTAAATT--AAAA-CTAAATTGGATATTTGG---AATG-AGCATG-GA-GTTTTCTA-TTGTAATTG--TAAATTTCATGATCCTAGGGG-TAGAGGTTGTGGTATTAG-GATGGG-------GCC--AAAATG---------GTC---ACTG---A-------TGAA--A-------------T--TG--------A----TTT-T---------------CTTCTTG--GTCACTATGAT-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-T-GGGACAAAGGG--GGACATTCATTAA-A-AAA-TT-CA-GGTTTTCTTG-TA-CCC-----CAGGG----GCCTT-AAG-GGTGGAGCAAAA--ATTGCCAAAAAGTG----------ACCAATTTT-AAGAAA--TCTTCTCT--A--CAA---CTACACAT---GTGTA-A-TAAAAAC-----TAAATAGATAGTGATATA--GAGCAG--GAGGGCCTCTACC--AAAATTG--TAA----------ATTTGGTGATCCCCGGG-------GTAGGGGTTCTGACCTCAGGGCGGGGC-CAAACT---TGGTACATAGTGC--TTATATGT-AAACATAT------GAAAA----C--TTCTTTAA-GGTATCCGATCCATAAAT----AGCAAAACAAAAATTT
gi|22 : -T-----------GAAAGAC---TTCTTTA-T---TTT-GC-T-GA----TACTTA-TT--AAAA-CTCAA-TGTGTATTTAGGAAAATC-AGAAAG-GG-GT
gi|23 : -GTCTTC-A-CAGTCAGTA--TAAATTTCATGATCCCA-GGGATA--------AGTATTCT-GATGGG-------GCC--AAAATG---------Gg
gi|24 : TAA-GGTATCCGATCCATAAAT----AG-AAA--AAAAATT
gi|27 : GGGCAAGG-G-CCACATAAATTGTAAATGTCAGGTCTTTTGCA--gatacctggaaagcatatga
gi|3 : AAAAGTGACC--AATTTTTCAAAA---A--TCTTCTTCTTTAC---AACCGCAC-ATGCCTGA-GA-GAAACTA-AATGCA--TGGTGATGTAGAGCAGGAAAGGCCTC-TACC-AAAATT--G-TAAATTTGGTGATTCCCGGG-G-TAGGG-TTCTGACACCAGGGTGGG-CCAAACTT--GGT--ACATAGTG--TAGTATGTGT-AAAACATTTGT-----------GAAAAACATCTT---TAAT---GCT-AT-T-GA----TAGTAAATT--AAAA-CTGAA-TGGAAAATTGG---AATG-AGCAGG-GA-GTATTCTA-TTATAATTG--TAAATTTTTTGATCCTA-GGGATAGGG-TTTTGCTAATAG-G-TGGG-------GCC--AAAATGCCGAAAATGGTC---ATAG---A-------TGAA--AATGTGTTAAACAAT--TG--------AACATTTT-T----------AG---CTTCTTCTTATAACT-CCAG-TCCAATTCTTTTCAAATT--TGGTAT---GAAGCATC----TT-TTGGGACAAGGGC--AC--ATAAATTGT-A-AAT-TTTCA-GGT-CTCTTG-CA-CCC-----CTGGG----GC--T-GGGAGGTGGG-C--AA--ACTGCCCAAAAGTG----------ACCAATTTT-CAAAAA--TCTTCTTT--A--CAA---CCGCAC-T---GCCCG-A-GAGAAAC-----TAAATGCATGGTGATGTA--GAGCAG--GAAGGCCTCTACC--AAAATTG--TAA----------ATTTGATGATCCCT-GG-------ATAGGGGTTCTGACTCCAGGGTGGGGC-C--ACT---TGGTACATAGTGT--AT-TGTGTAAAACATTT------GAAAAACGTC--TTCTTTAA---T------TCTATTGAT----AGTAAATTAAAA
gi|3 : AAATTGT-A-AAT-TT-GA-TGATCCCTGGATA----------GGGGTTCTGACTC-CAG-GGTGGGGC--CA--CTTGGTACATAGTGTATTGTGTAAAACA--TTT-GAAAAACGTCTTCTTT--A--ATT---CTATTGAT---AGTAA-A-TTAAAAC-----TGAATGGATAAT--TGGAATGAGCAG--GGAGTATTCTA-T--ATAATTG--TAA----------ATTT-TTGAT-CCTAGGAAGACCCGTGGGGGTCCCGctgaatggataattggaatgagcagggagtattctatataattgtaaatttttgatcctaggaagacccgtgggggtcccgggttagaatagg
gi|4 : aaaagtgaccaatttttcaaaaatcttcttctttacaaccgcacatgcctgagagaaactaaatgcatggtgatgtagagcaggaaaggcctctaccaaaattgtaaatttggtgattcccggggtagggttctgacaccagggtgggccaaacttggtacatagtgtagtatgtgtaaaacatttgtgaaaaacatctttaatgctattgatagtaaattaaaactgaatggaaaattggaatgagcagggagtattctattataattgtaaattttttgatcctagggatagggttttgctaataggtggggccaaaatgccgaaaatggtcatagatgaaaatgtgttaaacaattgaacatttttagcttcttcttataactccagtccaattcttttcaaatttggtatgaagcatcttttgggacaagggcacataaattgtaaattttcaggtctcttgcacccctggggctgggaggtgggcaaactgcccaaaagtgaccaattttcaaaaatcttctttacaaccgcactgcccgagagaaactaaatgcatggtgatgtagagcaggaaggcctctaccaCAATTGAA-AGATTTAAATTCTTC--TTTATATACTACCTCCA-ATTTCTTTT-CAAATTGGTAT-AAGCATCTTTGG-ACAAGG---C-ACATAGAGTGTTAAT-TCAGGAGTCTTGC---CTCCC-GGACCTTGGGGGGTGGG---GGGGGGTA--AAAAAGTGACA--AATTTT-CAAAA---AAAT-TTCTTCTAT-C---AACCACACCAAATC-AA-GATGAAACTA-AATGCAGTTATTGATGTAGAGCAGGAA---CCTTATACCCAAAATT--GATAAATTTAGT-ATTCCTGGGTG-CAGG--TTCT-ATTCCAGG-TGGGGCCAAACTT--GCTAAACATAGTGTTT-TTATATGTAAAAACA--T-C-----------GAATAGCAACTTCCTT-AT---GTT-ATGT-GA-------TAACTT--GAAATTTAAA-TAGAAATTTGG---AATGAAGCAGG-AA-GCCTTTCAGACTTAGTTT--T-AATTTCATGA-CCTA--GG-TAGGAATTT--GTAGTAG-GGTGGG-------GCC--AAAATG---------GTC---AGTG-----------TGAA--A-------------TG-TT--------T----TTT-T----------T----TTTCTTA--ATCACTA-AATCTCCAAT--CTTTCAA-----TGG-ATAAGGAAGCGTC----TT-T----------------------ATTGT-A-AAT-TTCCATGATTCTCCTG-CATCCC-----C---A----GCTTTAAGG-GGTGGGA------------CCAAAATTA----------A--AATTTT-CAAAAA--TCTTCTTTTAA--AAA---CTGCACGT---CC-TA-A-GAAAAAC-----AAAATGCATAGT-ATGTA---AACAG--GAA-GCCTCTACCAAAAAATT---TAA----------ATTTGGTggttagaatagg
gi|6 : gtggtcgcttaATCTT-CAAAAA--TCTTCTCT--ATGTTC---CTGAACATTTGACACA-GCTAGAGAC-----TGGCTACACAGC--TGTA---ATCAGGTGAAGGC-----CC--ATAATTA--TAACCTCTAAAATATTC--TGGTCCCTGAA-------TCCAGAATTTAGGCCCCAGACTGGAGCACTAA-T---TAGT--ATAGTGTAGTGGAAAAT-AAAAATGT------GAAAAT---C--TTCT
gi|7 : AAT---GCTCAT-TAGACATGTAATACCTT--AAAA-CTAAATTGGATATTTGGA--AATG-AGCAGG-TATTTCTTCTA--------TA--TATATCT--TGATCCTA--GT-TA-----TTAGGTATTAGAGGTGGG-------CTA--AAAATG---------GAT---AATGTGAA-------TGAA--A-------------TAATGTTAATTCTA----TTT-TGAACATTTTAA----CTTTCTT--GTCACTACCTT-TCCAATTC-TTTCAAATT--cctttactcctgaaatagtaa
gi|8 : atctcataTTTCGAATTGTCGGTAT---GA--CATTACCATT-T-GGCACAGAGGG--G---A-ATATTGTCATAATATT-CA-GGACTTCTTG-CT-TCCATGACTGAAG----GAC---AGG-GA--GGGC--AACAATTGTTTTAA--T-----------ATCACTTTTGTAAAAA--AGTTTTTT--A--TCATAGCTGC-TAT---T-GCATA-TAAAGACAAATTTAGATACATTGTGATGTA--GA
gi|9 : ttgcCTCAGCAATTGAACA--TTTCAGCTTTTCGATATTTA-T---CCTTCA-AATTCTTTTAAAATTTGGTAAAAAGCATCTT-------AGG-GTC-ACATAAATTGTAAATATCAGA-CACATGCACCCCCCC-CCCCCCCAAGTAA-GTA---AAAATGCCTTGGAAATTTACT--ATTTTT-CAAAA---A--
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAAATTATTGATTAATAAGGTTTCAAGCGCACTTTTGGACATACAGATTAGTAAGCATTATTGTGTATTTGCTTAATCTGTCATTGTAAGTAGCGATTATCCTTTCTACACTGCTTTTCCTTTAAGAAGTCTACCATTATCATGCTATATAGTGACTAACCAATTTGTAAACTCGGAAGATTGTTCTTTATTTATTTGTTTTGGTCCATAGTAATGTAGTCTAAAGGTGGCTTAAGTTTCTCGGACATCGGACATGTTCATTATGTTTAAGCAGATATGGTCTTTGGCTGGTTCAGCGGTTGTATCCTTCCCATCATACAGGTCAAAATCATATCATACAGTTGTAATTGTATTTATACTACCCATGGTCGTCATAGTCTCTATGC
Unaligned ( gi|12 ): ATGGTTTTCCGTGCGCTACTAAAAGTGTTACCCTTTCCTCCTAGAATGATACCCATACGATACATGGAGATTTGTATCCACCTATCGAATTTTGTTGGCTCCAAATAAGGTTAAGCACCATCTTAGGACAA
Unaligned ( gi|13 ): CACCCTCCAATAGCTGTTGTTAGGGAAAGGGGGGGTCAACTAGGTACTGAATCTGGACGGTAATGATCTGATCGCGAGACACATCCTGTCTGTGTAATCAGAGATGTTTTCCAGGCATGAATATGTTAG
Unaligned ( gi|15 ): AATCTTGAACGCAGCCCTGCACCCTTTGTGATATTGAAATGATAATCTTTTGTATCATATGAATATTTTGAAAGATCATAACACTCCAAATTGAGACTTAGAAATGCAAGTATGAGACT
Unaligned ( gi|16 ): CATGTCTGTCGGTCCGTCTGTAAACATAATGTATTCAGACATTAAAGTGTTAGCCTATTGACCCCAAATTCAATAGAGATATTCGACGACCCATGGGA
Unaligned ( gi|17 ): TACAGTGATTAAAATTTGTCATTGAAAACTTTTCAAATTTACTGACTATAGTATAAAAACTAAATGGATATTTACGAAAGCTGAAAAAGATGTAC
Unaligned ( gi|20 ): CCGAGAAAAACAATGCCATAGACCAGTATGTCTTAGGACTAGTAGGAAAGGTAAGTCTAATATAAAGCAAGTAACACAT
Unaligned ( gi|21 ): TGAAAGACTTCTTCTCTTTTGGTGATACTATATTAACACCAAAAAATATATATTTAAAAAAACCAAAAAGGGGGGTA
Unaligned ( gi|25 ): TCAGCGTTGTACTTTCCACATCGAGTCATCAAATCATACATGTATACA
Unaligned ( gi|26 ): AATGTCTATCTTTCCGTCTGTAAACATAATGATTTCCAGGCATTAA