lowQualScore : 11 111 2222222 777777777777777 222222 11 222 11111 88888888888888888888888888888 333333333333333333333333333 11111111111111 2222222222 22222222 111 11 22 111 11 222222 888888888888888 11111 22222 11 11 1 444444444444444444444444444444444444444 111 11 111 22222 111
lowQualScore : 8 11 444 7777777 111111111111111 333333 2 00 0 8 666 6 99 3 66666 1 88888888888888888888888888888 1 5 5 888 5 5 0 444444444444444444444444444 5 99999999999999 5 5555555555 66666666 0 444 44 55 5 8 88 3 0 8 3 444 5 8 0 99 4 000000 555555555555555 77 5 5 0 66666 8 8 0 8 44444 3 44 33 44 8 0 000000000000000000000000000000000000000 222 33 3 3 77 777 00000 3 333 3
lowQualScore : . .. ... ....... ............... ...... . .. . . ... . .. . ..... . ............................. . . . ... . . . ........................... . .............. . .......... ........ . ... .. .. . . .. . . . . ... . . . .. . ...... ............... .. . . . ..... . . . . ..... . .. .. .. . . ....................................... ... .. . . .. ... ..... . ... .
lowQualScore : 0 00 000 8888888 666666666666666 000000 8 88 8 0 444 7 22 3 77777 0 44444444444444444444444444444 7 7 7 444 7 7 1 111111111111111111111111111 0 55555555555555 0 0000000000 88888888 8 000 00 44 0 0 88 8 8 0 2 000 6 0 8 00 7 777777 000000000000000 99 7 7 1 77777 0 0 8 8 22222 2 00 88 55 8 0 555555555555555555555555555555555555555 888 88 2 5 22 555 88888 2 888 2
consensus : TATTCTAAA-GTGT--CATCT---ATACTA----TGA-TTTGAA-AT-----ATGA------AGAAAAACCCAATG-TTTTTTAAACTT-CT--TTAATTACTTA-----GCGTTAC----AA----ATAC-AG--G-GAA-TGT-CTAATTTA-GGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATT----------C-TCA-TA------TA------TTG-TAAT----------AATCATATC--CTCTATCTTTGTAAT---GGAGACT-ACAGTCACTC-TCCACTA-TGTTGTTTTTGTTGATATATTTAC-AATGTA---TATAATAATTGT-ATATATG--TGTATCCANTGAGC--TT--GTGGC--------------TCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----NATTATTTAGAAN-TT--ATTGGACGA-TCCA-TATNAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGNAANTTTTCT---GATACATC-GCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
Reference ( gi|5 ) : TATTCTAAA-GTGT--CATCT---ATA-TA----TGA-T----A-A------ATGA------AGGAAAATTCAATG-TTTAT-AAACTT-CT--TTAATTACCTA-----GCGTTAC----AA----ATACCAGCTGCGAACTAT-CTAATTTA-GGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATT----------C-TCA-TA------TA------TTG-TAAT----------AATCATATCA-CTCTATCTTTGTAAT---GGAGACT-ACAGTCCCTC-TCCACTA-TGTTGTTTTTGTTGATATATTTAC-AATGTA---TATAATAATTGT-ATATATG--TGTATCCATTGAGC--TT--GTGGT--------------TTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACGAG----AATTATTTAGAAA-TT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-ATGCGTATTTATTTGATTAA
gi|4 : TATTCTAAAAGTGT--CATCT---ATA-T-----TGA-T----A-A------ATGA------AGGAAAATGCAATG-TTTA---AACTT-CT--TTAATTAACTA-----GCGTTAC----AA----ATACCACCTGCGAACTAT-CTAATTTA-GGAGAA--AAGTCTA-CAATG-TGCAAC----------ACATT----------CTTCAGTA------TAC-----TTGTTAAT----------AATCATATCATCTCTATCTTTGAATT---GGAAGCTGACAGTCCCGC-T-CACTATTGTTGTTTTTGTTGATATATTTAC-AATGTAGCTTATAATAATTGTGATATATG--TG-ATCCATTGAGC--T----TGGT--------------TTTATGAAAT--GGCAAT-AA-CCTT-----GACGGTGG-TTACACGAG----AA-TATTTAGAAA-TT--ATCGGACCA-TCCA-TATTAT--ACC--TTGAA-ATGAA-TT--TTATA-GATTTTTTCTT-C-CGCAT--TTAA-TGAAAA-TTTCT---GATACATCCTCCCCATGC-TCTG-ATGCGTATTTATTTGATTAA
gi|3 : TGTTCTAAA-GTGT--CATAT---ATACTG----TGA-TTTGAA-ATTATACATGA------AGAAAAACCCAATG-TTTTTTACACT--CT--TTAAATACTTA-----A-GTTAC----AA----ATACCAA----GAA-TGT-CTA-TTTA-GGA-AA--TTTTTTAACAATG-TGCACC----------T--TT----------C-TCA-TA------CA------TTG-TAATTCTCGTTAATAATCATATCT-CTC-ATCTTTGCAAT---GGAGACT-ACAGTCCCTC-TCCACTA-TATTGTTTTTGTTGATATATTTAC-AATGTA---TATAATAATTGT-ATAT--GTGTGTATCCGTTGACC--TT--GTGGTTTACGAAAAATGGCTTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GGTTTACACTAG----CATTATTTAGAAATTT--ATT-GACGAGTCCA-T-----------------------TTT--T-------TTTTTTCTTGC-CGCAT--TTAGTTGTGAATTTTTTCTGGATAC-TC--CCCCATGCTTCTG-GGGCATATTTATTTGATTAA
gi|13 : atctacaatgatatagaggattagttcattTATTCTAAA-GTGT--CATCT---ATACTA----TGACT-------------ATGA------AGAAAAACCCAATG-TTTTT-AAACTT-CT--TCAATTACTTG-----GCGTTACTTGTAA----ATACAA---GAGAG-------AATT-----------GTGTCTA-CAATG-TGCAAC----------C-ATT----------C-TCA-TA------CA------TTG-TAAtcaaatgaaatcaaagtgaaatttgaaaagaaatcatttataattctttataaaaagtcgccttatgtagagtacatcgtctgatacatgtatatatcacgaattaaccactaataatagattgaaagaaatttgtttagtcagacaagctttttggaaaactatta
gi|8 : acatgatatagaggattagttccattATTCTAAC-ACGGAACATCT---ATG-TACTAATGA-CTTGAA-A------ATGATATAAGAGAAAAACCCA-TGCTTTGTTAAACTT-CTCTTTAATTACTTATTATGACGTTACC---AAGTATATAAAAGAAGCG---TGTGCTAATGTAAGGA-AAGTATGTCTA-CAATGTTGC--C----------A-ATT----------T-CAA-TA------TA------CTA--AGT----------ATTTATAT-A-TTCT
gi|6 : tatgaatagagaggtaatgagttccattttcgTTCTAAA-CTAT--GACTTGAAATA-TA----TGA-T----ATAT-----ATGA------AGAAAAACCCAATG-TTTTT-AAACTT-CT--TTAATTACTTA-----GCGTTAC----A--------------------TGT-CTAACTTA-GGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTGATTGTAATTC-TCG-TA------TACATGTATTG-TAAT----------AATCACATC---------TTTGTAAT---GGAGACA-AC--TCACTG-TCCACTT-TGTTGCTTTTGTTGATATATTTAC-AAT------------AATTGT-ATATATG--TGTATCCAATCAGC--TT--GTGGCCAACGGAAAATGGCTTTATGAAAT--GA-AAT-AATCCTT-----GACGG-GG-TTACACTAG----CATTATCTAAAAT-TT--ATTGGAC-A-TCCA-TATAAT--ACC--TTAAA-ATGAATTT--ATATT-GA-TTTTTCTTGA-CGCAT--TTAATTGAAATTTTTCT---GATACATCtgtatagtaaaagtgttatctgtaataaatcatgacttcctctaaatcgtttgttagatt
gi|11 : tctacatgaaataggggaagagttccattatAACTTATT--TTAATTATTTC-----GTGTTAC----AA----A----AGAT---AATT-T-CTAATGTA-GGA-AA--ATTTCTA-CAAAG-TGCGACGAAATTAAAGA-ATT----------C-TCA-TA------TA------TTG-TAGT--------------------------TCTTTGTAATATCGGAGACT-AC--TCACTC-TCCACTA-TGTTATTTTTGCTGGTATAT--------GTA---TATAATAATTGT-ATTTATA--TTTATCCAATGAGA--TT--GTGGC--------------TCACGGAAATAAAG-AATCAATC
gi|17 : GAACTGT-CTAATTAA-GGA-AA--TTGTCTA-CAATG-TGCAAC----------A-ATT----------T-TCA-TATACTAGTA------TTG-TAAT----------acgtttatcatttatgttg
gi|14 : CA-TG------TA------TTG-TAAT----------AATCATATCC-CTCTATC-TTGTAAT----GAGAC--AC--TCACTCTTCCACTA---TTGTTTTTG-TGATATATTTACAAATATA---TAT-ATAATT-T-ATATATGC-TGTGCTAACGGAAA------ATGG----------------CTATGAAAT--GG-AAT-AATCCTT-----tcttgtatatacatgtattgtaata
gi|20 : attctaacataGTATCCACTGGACATTTCCGTGGC--------------TCTATGAAAT--GG-AAT-AATCCTTGCATAGGCGG-GT-TTA
gi|1 : ATGAAAT--GG-AAT-ATCCCTT-----GACGG-GG-T---ACTAGGCATAGTTATTTAGAAT-TTTAGTTGGACGA-TCCATTATCATCAACCAATTGAATAGAAAATTGGTGATATGA-TTTTACTTGTACGCATTATTAATTACAATTTTTCT---GATACA---GTCCCATGCTTCTGAAGGTGT-TTTATTTG
gi|9 : catccactattttaattgtgataactaatacatatgttatgttgatagtaatgtcatatggtgatgcgagacgttgagtggatacgcaaaatgaaatttattataTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAAgatgtcaatgaagaaaataattattatttcaaagcatcccgatccctaagaacagtgaacatattttgaggaagacgtcagcatatattattgctcgtacaacaaagtcgactaatgatagtacatcgtcttaatgttaatttctcattaatacatttgaaacaagcaattatgttttggttagtagcagatccactttttgaaaattcttattaactttgttttccagttacattccacatttttagaaaagttcattagtacgggcatcaatagtggcagttacgtgaacatcatccaaagcacgttacacggcatatcaacttgatgtcaattttggctgatgttggagttcttatgatacgaaacttttgttccaatcagttccaatttataaaaaatatacctagactatgaaagctgatttcataaattaaataactaaaagaacaaacaagagtaaatgactaaccgttctgtggccgccatcttgggctacccccaactgcattacggggcatcggccttaataccagtgatactctggccactatatatatactataccgaggtagatttttgctttaaattttcaatcaccataagcacgcattccctccgccctcccttaaagctcaaaactctgcaattccgcggccctgacataggaaatcgattttggattcaagaccttgtatacccgtatgttagcaattatcacgtcaaatttgttttgttgacactaaatacttaatatattgtagatgattataaatagggtgcatattgctgaattttacccatttgcatccatttgcatcacatgcagataatataaggttttatggcatattttgggaaaaacttcaattttcatgaaaaattcagccttttgtttttaaataccatttgccatcagcgggccttgcctgactttggaaaaacttagataaatatgc
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TACTAGGCTATGAAGCTATTTCAATAATAAAATTACAAAAGAAAAAAAAAAAAAACGAGAAAATGACTAACCCGATCTGTGGCGCCATCTTGGTGCTACTAGCAAGTGATATACCGGGGCACCATATAAATACATACCACGCGAGGTAGTTATTTTCAATTTTTCATCCATGCACACCCGCCCCCTTAAACTCAAAATCTGCATCTGCCCCTGAATAGGAATACGCATTGATAGACTCAGCACACTATATTTACATGTCCATCAACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTTCCTATGAACATTCAGCCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGACTTAGATAAATATGCAAAAAGCCCATGTACTGGAAACTACACCTATTTAAACGACCAACGTGTTTGCAAGTTACGGGTATCCGTATGCCAGTTACACTCATCGCGACTATGCAGTTACACCGCATCATTCTGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATTCAACAGTTTAGTTATTAGTTATTACGTATGATAAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTTAACTGCAGTTACGGGCATCGGCTTAATACCA
Unaligned ( gi|7 ): TCAAGGCAACATTTACTTTGGTAGTTACGGATATCATATCTAGTTACGGGTATCATTTCTCAGTTACGTGCATTCACATTAGTTACGGGCATAAATAGCGGCAGTTACACGCACCATCACTGATGTCAATTCCAATTTTATAAAAATACACACTAGACTATATGATGCTATTTCAATAAATAAATAACAAAAGAAAGAAAAAAACAGAGATAAATGACTAACCCGATTCTGTGGCCGCCATCTTGGGCTACCCGTAACTGCAGTTACGGGCATCGGCTTAATACCAGT
Unaligned ( gi|10 ): TTAGATAAATAAGCAAAAAGTCCCATGATACTGAAACTACTCCTACAGTAAAATACCAACGTGGTGGCTAGTAATGGGAATCCGTATTGCCAGTTACTCTCAGCGCGAATATGCAGTTACACGCATCATTCTGGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATATAACAGTTTAGTTATTTATCGTA
Unaligned ( gi|12 ): TTACAGCATCATCTGTTCTTTTTTCATACAACGTAACACGGAGTAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAAGTATTGTCCGTATTGGAATAATTTAACAGTTAGTTATTTATCGTATGATAAAACAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGTTACGGGTATCGGCTTA
Unaligned ( gi|15 ): ATCTTTTAATTTTGGCCTTTAACCTTTTAATATATATAAATATAATCAAAATATCTTTAACCCCCTATACGTGTGTATATATCAGTTGGGCCTATACGACTATCCAAGTCAGG
Unaligned ( gi|16 ): GTTTAGTTATTTATCGTATGATAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGATACGGGCATCGGCTTAATACCAG
Unaligned ( gi|18 ): ATCTACAATGATATAGAGGATTAGTTTTCTGTTCATCTAGACTATGAATAATGAAAAGAGAAAAACCTAATGTTCTAAAC
Unaligned ( gi|19 ): CAACTTCGTTATGTGTACCGGTATATAAATACAGAATTTGTTCAATGTATAATCTTTTGATTTCC
Unaligned ( gi|21 ): TACATAGAGGATGAATTCCATTTTATTCTAAGGTGTCTTCTATATTATGACTTGAGAAA
Unaligned ( gi|22 ): ATGCTTCGGATCCAATTGATTCAAGGCAATATTTACTTTGGTAGTTACGGGTA
Unaligned ( gi|23 ): AGTTACGGGCATCGGCTTAATACCAGT
Alignments
lowQualScore : 55555555555555555555555 1111 1111 11111 1111 5555555555555555555 444444444444 111111 111111 2222222222 2222 111 11 11 111 666666666666666666666 11111 11111 11 11 11 11111111111 11 111 22222
lowQualScore : 6 77 66 4 5 88888 33333333333333333333333 5 0 9999 1111 44444 5 2222 1 6666666666666666666 5 55 5 66 5 5 666666666666 777777 4 222222 4 4 1111111111 1 5555 3 111 00 88 3 6 6 1 999 111 6 6 6 1 777777777777777777777 1 66 5 5 44444 6 6 0 88888 0 8 1 11 5 8 8 0 3 11 11 8 0 6 44444444444 8 11 0 1 11 444 77777 0 8 0
lowQualScore : . .. .. . . ..... ....................... . . .... .... ..... . .... . ................... . .. . .. . . ............ ...... . ...... . . .......... . .... . ... .. .. . . . . ... ... . . . . ..................... . .. . . ..... . . . ..... . . . .. . . . . . .. .. . . . ........... . .. . . .. ... ..... . . .
lowQualScore : 7 99 99 5 0 99999 11111111111111111111111 7 1 4444 6666 33333 7 1111 4 2222222222222222222 0 44 0 99 0 0 000000000000 222222 4 888888 4 4 9999999999 4 7777 6 777 22 00 0 7 7 7 333 777 7 7 7 0 666666666666666666666 7 99 0 0 33333 7 7 6 00000 8 0 0 00 0 0 0 8 8 00 00 0 6 0 88888888888 0 00 8 0 88 000 66666 8 0 8
consensus : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACT--TGAAA----T-----AT-----------GA-AGAAAAACCCAATGTTTT-TTAAACT--T-CTTTAATTACTTA-----GCGTTA-C----AAATAC---A---AA----GAAC--TGT-CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-C--CTCTATCTTTGTAAT---GGAGACT-ACAGTCNCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----AATTATTTAG-AATTT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
Reference ( family-1155 ) : TATTCTAAA-GTGT--CATCTAT--ACTA-TGATT--TGAAA----T-----AT-----------GA-AGAAAAACCCAATGTTTT-TTAAACT--T-CTTTAATTACTTA-----GCGTTA-C----AAATAC---A---GG----GAA---TGT-CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-C--CTCTATCTTTGTAAT---GGAGACT-ACAGTCACTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----NATTATTTAG-AANTT--ATTGGACGA-TCCA-TATNAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGNAANTTTTCT---GATACAT-CGCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
gi|1 : ATGAAAT--GG-AAT-ATCCCTT-----GACGG-GG-T---ACTAGGCATAGTTATTTAG-AATTTTAGTTGGACGA-TCCATTATCATCAACCAATTGAATAGAAAATTGGTGATATGA-TTTTACTTGTACGCATTATTAATTACAATTTTTCT---GATACA---GTCCCATGCTTCTGAAGGTGT-TTTATTTG
gi|11 : catccactattttaattgtgataactaatacatatgttatgttgatagtaatgtcatatggtgatgcgagacgttgagtggatacgcaaaatgaaatttattataAACT--TATTTTAATTATTTC-----GTGTTA-C----AAA------A---GA----TAA---TTT-CTAATGT-AGGA-AA--ATTTCTA-CAAAG-TGCGACGAAATTAAAGA-ATTCT------CA-TA------TA-TTGT-AGT---------------------------TCTTTGTAATATCGGAGACT-AC--TCACTC-TCCACTAT-GTTATTTTTGCTGGTATAT-------GTA---TATA-ATAATTGT-ATTTATA-TTTATCCAATGAGA--TT--G--------------TGGCTCACGGAAATAAAG-AATCAATCgatgtcaatgaagaaaataattattatttcaaagcatcccgatccctaagaacagtgaacatattttgaggaagacgtcagcatatattattgctcgtacaacaaagtcgactaatgatagtacatcgtcttaatgttaatttctcattaatacatttgaaacaagcaattatgttttggttagtagcagatccactttttgaaaattcttattaactttgttttccagttacattccacatttttagaaaagttcattagtacgggcatcaatagtggcagttacgtgaacatcatccaaagcacgttacacggcatatcaacttgatgtcaattttggctgatgttggagttcttatgatacgaaacttttgttccaatcagttccaatttataaaaaatatacctagactatgaaagctgatttcataaattaaataactaaaagaacaaacaagagtaaatgactaaccgttctgtggccgccatcttgggctacccccaactgcattacggggcatcggccttaataccagtgatactctggccactatatatatactataccgaggtagatttttgctttaaattttcaatcaccataagcacgcattccctccgccctcccttaaagctcaaaactctgcaattccgcggccctgacataggaaatcgattttggattcaagaccttgtatacccgtatgttagcaattatcacgtcaaatttgttttgttgacactaaatacttaatatattgtagatgattataaatagggtgcatattgctgaattttacccatttgcatccatttgcatcacatgcagataatataaggttttatggcatattttgggaaaaacttcaattttcatgaaaaattcagccttttgtttttaaataccatttgccatcagcgggccttgcctgactttggaaaaacttagataaatatgc
gi|13 : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACT-----------------AT-----------GA-AGAAAAACCCAATGTTTT--TAAACT--T-CTTCAATTACTTG-----GCGTTA-CTTGTAAATAC---A---AG----AGA----G----AATT-----------GTGTCTA-CAATG-TGCAAC----------C-ATTCT------CA-TA------CA-TTGT-AAacgtttatcatttatgttg
gi|14 : acatgatatagaggattagttccatt------CA-TG------TA-TTGT-AAT----------AATCATATCC--CTCTATC-TTGTAAT----GAGAC--AC--TCACTCTTCCACTA---TTGTTTTTG-TGATATATTTACAA-ATA---TATATATAATT-T-ATATATGCTGTGCTAACGGAAA------A--------------TGG--CTATGAAAT--GG-AAT-AATCCTT-----
gi|17 : attctaacata----GAAC--TGT-CTAATTA-AGGA-AA--TTGTCTA-CAATG-TGCAAC----------A-ATTTT------CA-TATACTAGTA-TTGT-AAT----------
gi|18 : T--CATCTAG--ACTA-TGAATAATGAAA-----------------------AG-AGAAAAACCTAATG--TT-CTAAACtcttgtatatacatgtattgtaata
gi|20 : atctacaatgatatagaggattagttttctgtGTATCCACTGGACATTTCCG--------------TGGCTCTATGAAAT--GG-AAT-AATCCTTGCATAGGCGG-GT-TTA
gi|21 : TATTCTAAG-GTGT--CTTCTAT--ATTA-TGACT--TGAGA----
gi|3 : tacatagaggatgaattccatttTGTTCTAAA-GTGT--CATATAT--ACTG-TGATT--TGAAA----TTATACAT-----------GA-AGAAAAACCCAATGTTTT-TTACACT----CTTTAAATACTTA-----A-GTTA-C----AAATAC---C---AA----GAA---TGT-CTA-TTT-AGGA-AA--TTTTTTAACAATG-TGCACC----------T--TTCT------CA-TA------CA-TTGT-AATTCTCGTTAATAATCATAT-CT-CTC-ATCTTTGCAAT---GGAGACT-ACAGTCCCTC-TCCACTAT-ATTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATGTG-TGTATCCGTTGACC--TT--GTGGTTTACGAAAAATGGCTTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GGTTTACACTAG----CATTATTTAGAAATTT--ATT-GACGAGTCCA-T-----------------------TTT--T-------TTTTTTCTTGC-CGCAT--TTAGTTGTGAATTTTTTCTGGATAC-T-C-CCCCATGCTTCTG-GGGCATATTTATTTGATTAAaa
gi|4 : atctacaatgatatagaggattagttcattTATTCTAAAAGTGT--CATCTAT--A--------T--TGATA----A-----AT-----------GA-AGGAAAATGCAATGTTT----AAACT--T-CTTTAATTAACTA-----GCGTTA-C----AAATACC--ACCTGC----GAAC--TAT-CTAATTT-AGGAGAA--AAGTCTA-CAATG-TGCAAC----------ACATTCTT-----CAGTA------TACTTGTTAAT----------AATCATAT-CATCTCTATCTTTGAATT---GGAAGCTGACAGTCCCGC-TC-ACTATTGTTGTTTTTGTTGATATATTTACAATGTAGCTTATA-ATAATTGTGATATATG-TG-ATCCATTGAGC--TT--G----------------GTTTTATGAAAT--GGCAAT-AA-CCTT-----GACGGTGG-TTACACGAG----AAT-ATTTAG-AAATT--ATCGGACCA-TCCA-TATTAT--ACC--TTGAA-ATGAA-TT--TTATA-GATTTTTTCTT-C-CGCAT--TTAA-TGAAAA-TTTCT---GATACATCCTCCCCATGC-TCTG-ATGCGTATTTATTTGATTAAtcaaatgaaatcaaagtgaaatttgaaaagaaatcatttataattctttataaaaagtcgccttatgtagagtacatcgtctgatacatgtatatatcacgaattaaccactaataatagattgaaagaaatttgtttagtcagacaagctttttggaaaactatta
gi|5 : TATTCTAAA-GTGT--CATCTAT--A-TA-TGAT------AA----------AT-----------GA-AGGAAAATTCAATGTTTA-T-AAACT--T-CTTTAATTACCTA-----GCGTTA-C----AAATAC---C---AGCTGCGAAC--TAT-CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-CA-CTCTATCTTTGTAAT---GGAGACT-ACAGTCCCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCATTGAGC--TT--G--------------TGGTTTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACGAG----AATTATTTAG-AAATT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-ATGCGTATTTATTTGATTAA
gi|6 : TCTAA--ACTA-TGACT--TGAAA----T-----ATATGATATATATGA-AGAAAAACCCAATGTTTT-T-AAACT--T-CTTTAATTACTTA-----GCGTTA-C----A------------------------TGT-CTAACTT-AGGA-AA--ATGTCTA-CAATG-TGCAACAATTGATTGTA-ATTCTCGTATACA-TG------TA-TTGT-AAT----------AATCA----------CATCTTTGTAAT---GGAGACA-AC--TCACTG-TCCACTTT-GTTGCTTTTGTTGATATATTTAC------------A-ATAATTGT-ATATATG-TGTATCCAATCAGC--TT--GTGGCCAACGGAAAATGGCTTTATGAAAT--GA-AAT-AATCCTT-----GACGG-GG-TTACACTAG----CATTATCTAA-AATTT--ATTGGAC-A-TCCA-TATAAT--ACC--TTAAA-ATGAATTT--ATATT-GA-TTTTTCTTGA-CGCAT--TTAATTGAAATTTTTCT---GATACAT-C
gi|8 : tctacatgaaataggggaagagttccattattATTCTAAC-ACGGAACATCTATGTACTAATGACT--TGAAAATGAT-----AT-----------AAGAGAAAAACCC-ATGCTTTGTTAAACTTCT-CTTTAATTACTTATTATGACGTTACC----AAGTATATAA---AA----GAAGCGTGTGCTAATGTAAGGA-AAGTATGTCTA-CAATGTTGC--C----------A-ATTTC------AA-TA------TA-CTA--AGT----------ATTTATAT-A--TTCT
gi|9 : tatgaatagagaggtaatgagttccattttcgCCCCATGCTTCTG-AGGCGTATTTATTTGATTAAtgtatagtaaaagtgttatctgtaataaatcatgacttcctctaaatcgtttgttagatt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TACTAGGCTATGAAGCTATTTCAATAATAAAATTACAAAAGAAAAAAAAAAAAAACGAGAAAATGACTAACCCGATCTGTGGCGCCATCTTGGTGCTACTAGCAAGTGATATACCGGGGCACCATATAAATACATACCACGCGAGGTAGTTATTTTCAATTTTTCATCCATGCACACCCGCCCCCTTAAACTCAAAATCTGCATCTGCCCCTGAATAGGAATACGCATTGATAGACTCAGCACACTATATTTACATGTCCATCAACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTTCCTATGAACATTCAGCCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGACTTAGATAAATATGCAAAAAGCCCATGTACTGGAAACTACACCTATTTAAACGACCAACGTGTTTGCAAGTTACGGGTATCCGTATGCCAGTTACACTCATCGCGACTATGCAGTTACACCGCATCATTCTGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATTCAACAGTTTAGTTATTAGTTATTACGTATGATAAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTTAACTGCAGTTACGGGCATCGGCTTAATACCA
Unaligned ( gi|7 ): TCAAGGCAACATTTACTTTGGTAGTTACGGATATCATATCTAGTTACGGGTATCATTTCTCAGTTACGTGCATTCACATTAGTTACGGGCATAAATAGCGGCAGTTACACGCACCATCACTGATGTCAATTCCAATTTTATAAAAATACACACTAGACTATATGATGCTATTTCAATAAATAAATAACAAAAGAAAGAAAAAAACAGAGATAAATGACTAACCCGATTCTGTGGCCGCCATCTTGGGCTACCCGTAACTGCAGTTACGGGCATCGGCTTAATACCAGT
Unaligned ( gi|10 ): TTAGATAAATAAGCAAAAAGTCCCATGATACTGAAACTACTCCTACAGTAAAATACCAACGTGGTGGCTAGTAATGGGAATCCGTATTGCCAGTTACTCTCAGCGCGAATATGCAGTTACACGCATCATTCTGGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATATAACAGTTTAGTTATTTATCGTA
Unaligned ( gi|12 ): TTACAGCATCATCTGTTCTTTTTTCATACAACGTAACACGGAGTAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAAGTATTGTCCGTATTGGAATAATTTAACAGTTAGTTATTTATCGTATGATAAAACAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGTTACGGGTATCGGCTTA
Unaligned ( gi|15 ): ATCTTTTAATTTTGGCCTTTAACCTTTTAATATATATAAATATAATCAAAATATCTTTAACCCCCTATACGTGTGTATATATCAGTTGGGCCTATACGACTATCCAAGTCAGG
Unaligned ( gi|16 ): GTTTAGTTATTTATCGTATGATAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGATACGGGCATCGGCTTAATACCAG
Unaligned ( gi|19 ): CAACTTCGTTATGTGTACCGGTATATAAATACAGAATTTGTTCAATGTATAATCTTTTGATTTCC
Unaligned ( gi|22 ): ATGCTTCGGATCCAATTGATTCAAGGCAATATTTACTTTGGTAGTTACGGGTA
Unaligned ( gi|23 ): AGTTACGGGCATCGGCTTAATACCAGT
Alignments
lowQualScore : 1111 44444444444444444444444 1111 1111 11111 1111 33333333333 1111111 444444444444 111111 111111 2222222222 2222 111 11 11 111 666666666666666666666 11111 11111 11 11 11 11111111111 11 111
lowQualScore : 6 77 66 4 5 0000 99999999999999999999999 5 7 2222 1111 44444 5 2222 1 88888888888 2222222 55 5 66 5 5 666666666666 777777 4 222222 4 4 1111111111 1 5555 3 111 00 88 1 6 6 1 999 111 6 6 6 1 777777777777777777777 1 66 5 5 44444 6 6 0 77777 0 8 1 11 5 8 8 0 4 11 11 8 0 6 44444444444 8 11 0 1 22 444 11 99 0 8 0
lowQualScore : . .. .. . . .... ....................... . . .... .... ..... . .... . ........... ....... .. . .. . . ............ ...... . ...... . . .......... . .... . ... .. .. . . . . ... ... . . . . ..................... . .. . . ..... . . . ..... . . . .. . . . . . .. .. . . . ........... . .. . . .. ... .. .. . . .
lowQualScore : 7 99 99 5 0 4444 66666666666666666666666 7 1 4444 6666 33333 7 1111 4 33333333333 8888888 44 0 99 0 0 000000000000 222222 4 888888 4 4 9999999999 4 7777 6 777 22 00 0 7 7 7 333 777 7 7 7 0 666666666666666666666 7 99 0 0 33333 7 7 6 66666 8 0 4 00 0 0 0 8 0 00 00 0 6 0 88888888888 0 00 8 0 22 000 66 33 8 0 8
consensus : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACT--TGAAA----T-----AT-----------GA-AGAAAAACCCAATGTTTT-TTAAACT--T-CTTTAATTACTTA-----GCGTTA-C----AAATAC---NA-A----GAACTGT---CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-C--CTCTATCTTTGTAAT---GGAGACT-ACAGTCNCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----AATTATTTAG-AATTT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
Reference ( family-1155 ) : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACT--TGAAA----T-----AT-----------GA-AGAAAAACCCAATGTTTT-TTAAACT--T-CTTTAATTACTTA-----GCGTTA-C----AAATAC---AA-A----GAACTGT---CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-C--CTCTATCTTTGTAAT---GGAGACT-ACAGTCNCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----AATTATTTAG-AATTT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
gi|1 : ATGAAAT--GG-AAT-ATCCCTT-----GACGG-GG-T---ACTAGGCATAGTTATTTAG-AATTTTAGTTGGACGA-TCCATTATCATCAACCAATTGAATAGAAAATTGGTGATATGA-TTTTACTTGTACGCATTATTAATTACAATTTTTCT---GATACA---GTCCCATGCTTCTGAAGGTGT-TTTATTTG
gi|11 : catccactattttaattgtgataactaatacatatgttatgttgatagtaatgtcatatggtgatgcgagacgttgagtggatacgcaaaatgaaatttattataAACT--TATTTTAATTATTTC-----GTGTTA-C----AAA------AG-A----TAATT-T---CTAATGT-AGGA-AA--ATTTCTA-CAAAG-TGCGACGAAATTAAAGA-ATTCT------CA-TA------TA-TTGT-AGT---------------------------TCTTTGTAATATCGGAGACT-AC--TCACTC-TCCACTAT-GTTATTTTTGCTGGTATAT-------GTA---TATA-ATAATTGT-ATTTATA-TTTATCCAATGAGA--TT--G--------------TGGCTCACGGAAATAAAG-AATCAATCgatgtcaatgaagaaaataattattatttcaaagcatcccgatccctaagaacagtgaacatattttgaggaagacgtcagcatatattattgctcgtacaacaaagtcgactaatgatagtacatcgtcttaatgttaatttctcattaatacatttgaaacaagcaattatgttttggttagtagcagatccactttttgaaaattcttattaactttgttttccagttacattccacatttttagaaaagttcattagtacgggcatcaatagtggcagttacgtgaacatcatccaaagcacgttacacggcatatcaacttgatgtcaattttggctgatgttggagttcttatgatacgaaacttttgttccaatcagttccaatttataaaaaatatacctagactatgaaagctgatttcataaattaaataactaaaagaacaaacaagagtaaatgactaaccgttctgtggccgccatcttgggctacccccaactgcattacggggcatcggccttaataccagtgatactctggccactatatatatactataccgaggtagatttttgctttaaattttcaatcaccataagcacgcattccctccgccctcccttaaagctcaaaactctgcaattccgcggccctgacataggaaatcgattttggattcaagaccttgtatacccgtatgttagcaattatcacgtcaaatttgttttgttgacactaaatacttaatatattgtagatgattataaatagggtgcatattgctgaattttacccatttgcatccatttgcatcacatgcagataatataaggttttatggcatattttgggaaaaacttcaattttcatgaaaaattcagccttttgtttttaaataccatttgccatcagcgggccttgcctgactttggaaaaacttagataaatatgc
gi|13 : TATTCTAAA-GTGT--CATCTAT--ACTA-TGAC------------T-----AT-----------GA-AGAAAAACCCAATG-TTT-TTAAACT--T-CTTCAATTACTTG-----GCGTTA-CTTGTAAATAC---AAGA----GAG---------AATT-----------GTGTCTA-CAATG-TGCAAC----------C-ATTCT------CA-TA------CA-TTGT-AAacgtttatcatttatgttg
gi|14 : acatgatatagaggattagttccatt------CA-TG------TA-TTGT-AAT----------AATCATATCC--CTCTATC-TTGTAAT----GAGAC--AC--TCACTCTTCCACTA---TTGTTTTTG-TGATATATTTACAA-ATA---TATATATAATT-T-ATATATGCTGTGCTAACGGAAA------A--------------TGG--CTATGAAAT--GG-AAT-AATCCTT-----
gi|17 : attctaacata----GAACTGT---CTAATTA-AGGA-AA--TTGTCTA-CAATG-TGCAAC----------A-ATTTT------CA-TATACTAGTA-TTGT-AAT----------
gi|18 : T--CATCTAG--ACTA-TGAATAATGAAA-----------------------AG-AGAAAAACCTAATG--TT-CTAAACtcttgtatatacatgtattgtaata
gi|20 : atctacaatgatatagaggattagttttctgtGTATCCACTGGACATTTCCG--------------TGGCTCTATGAAAT--GG-AAT-AATCCTTGCATAGGCGG-GT-TTA
gi|21 : TATTCTAAG-GTGT--CTTCTAT--ATTA-TGACT--TGAGA----
gi|3 : tacatagaggatgaattccatttTGTTCTAAA-GTGT--CATATAT--ACTG-TGATT--TGAAA----TTATACAT-----------GA-AGAAAAACCCAATGTTTT-TTACACT----CTTTAAATACTTA-----A-GTTA-C----AAATAC---CA-A----GAA-TGT---CTA-TTT-AGGA-AA--TTTTTTAACAATG-TGCACC----------T--TTCT------CA-TA------CA-TTGT-AATTCTCGTTAATAATCATAT-CT-CTC-ATCTTTGCAAT---GGAGACT-ACAGTCCCTC-TCCACTAT-ATTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATGTG-TGTATCCGTTGACC--TT--GTGGTTTACGAAAAATGGCTTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GGTTTACACTAG----CATTATTTAGAAATTT--ATT-GACGAGTCCA-T-----------------------TTT--T-------TTTTTTCTTGC-CGCAT--TTAGTTGTGAATTTTTTCTGGATAC-TC--CCCCATGCTTCTG-GGGCATATTTATTTGATTAAaa
gi|4 : atctacaatgatatagaggattagttcattTATTCTAAAAGTGT--CATCTAT--A--------T--TGATA----A-----AT-----------GA-AGGAAAATGCAATGTTT----AAACT--T-CTTTAATTAACTA-----GCGTTA-C----AAATAC---CA-CCTGCGAACTAT---CTAATTT-AGGAGAA--AAGTCTA-CAATG-TGCAAC----------ACATTCTT-----CAGTA------TACTTGTTAAT----------AATCATAT-CATCTCTATCTTTGAATT---GGAAGCTGACAGTCCCGC-TC-ACTATTGTTGTTTTTGTTGATATATTTACAATGTAGCTTATA-ATAATTGTGATATATG-TG-ATCCATTGAGC--TT--G----------------GTTTTATGAAAT--GGCAAT-AA-CCTT-----GACGGTGG-TTACACGAG----AAT-ATTTAG-AAATT--ATCGGACCA-TCCA-TATTAT--ACC--TTGAA-ATGAA-TT--TTATA-GATTTTTTCTT-C-CGCAT--TTAA-TGAAAA-TTTCT---GATACATCCTCCCCATGC-TCTG-ATGCGTATTTATTTGATTAAtcaaatgaaatcaaagtgaaatttgaaaagaaatcatttataattctttataaaaagtcgccttatgtagagtacatcgtctgatacatgtatatatcacgaattaaccactaataatagattgaaagaaatttgtttagtcagacaagctttttggaaaactatta
gi|5 : TATTCTAAA-GTGT--CATCTAT--A-TA-TGAT------AA----------AT-----------GA-AGGAAAATTCAATGTTTA-T-AAACT--T-CTTTAATTACCTA-----GCGTTA-C----AAATAC---CA-GCTGCGAACTAT---CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-CA-CTCTATCTTTGTAAT---GGAGACT-ACAGTCCCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCATTGAGC--TT--G--------------TGGTTTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACGAG----AATTATTTAG-AAATT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-ATGCGTATTTATTTGATTAA
gi|6 : TCTAA--ACTA-TGACT--TGAAA----T-----ATATGATATATATGA-AGAAAAACCCAATGTTTT-T-AAACT--T-CTTTAATTACTTA-----GCGTTA-C----A--------------------TGT---CTAACTT-AGGA-AA--ATGTCTA-CAATG-TGCAACAATTGATTGTA-ATTCTCGTATACA-TG------TA-TTGT-AAT----------AATCA----------CATCTTTGTAAT---GGAGACA-AC--TCACTG-TCCACTTT-GTTGCTTTTGTTGATATATTTAC------------A-ATAATTGT-ATATATG-TGTATCCAATCAGC--TT--GTGGCCAACGGAAAATGGCTTTATGAAAT--GA-AAT-AATCCTT-----GACGG-GG-TTACACTAG----CATTATCTAA-AATTT--ATTGGAC-A-TCCA-TATAAT--ACC--TTAAA-ATGAATTT--ATATT-GA-TTTTTCTTGA-CGCAT--TTAATTGAAATTTTTCT---GATACATC
gi|8 : tctacatgaaataggggaagagttccattattATTCTAAC-ACGGAACATCTATGTACTAATGACT--TGAAAATGAT-----AT-----------AAGAGAAAAACCC-ATGCTTTGTTAAACTTCT-CTTTAATTACTTATTATGACGTTACC----AAGTATATAAA-A----GAAGCGTGTGCTAATGTAAGGA-AAGTATGTCTA-CAATGTTGC--C----------A-ATTTC------AA-TA------TA-CTA--AGT----------ATTTATAT-A--TTCT
gi|9 : tatgaatagagaggtaatgagttccattttcgTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAAtgtatagtaaaagtgttatctgtaataaatcatgacttcctctaaatcgtttgttagatt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TACTAGGCTATGAAGCTATTTCAATAATAAAATTACAAAAGAAAAAAAAAAAAAACGAGAAAATGACTAACCCGATCTGTGGCGCCATCTTGGTGCTACTAGCAAGTGATATACCGGGGCACCATATAAATACATACCACGCGAGGTAGTTATTTTCAATTTTTCATCCATGCACACCCGCCCCCTTAAACTCAAAATCTGCATCTGCCCCTGAATAGGAATACGCATTGATAGACTCAGCACACTATATTTACATGTCCATCAACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTTCCTATGAACATTCAGCCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGACTTAGATAAATATGCAAAAAGCCCATGTACTGGAAACTACACCTATTTAAACGACCAACGTGTTTGCAAGTTACGGGTATCCGTATGCCAGTTACACTCATCGCGACTATGCAGTTACACCGCATCATTCTGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATTCAACAGTTTAGTTATTAGTTATTACGTATGATAAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTTAACTGCAGTTACGGGCATCGGCTTAATACCA
Unaligned ( gi|7 ): TCAAGGCAACATTTACTTTGGTAGTTACGGATATCATATCTAGTTACGGGTATCATTTCTCAGTTACGTGCATTCACATTAGTTACGGGCATAAATAGCGGCAGTTACACGCACCATCACTGATGTCAATTCCAATTTTATAAAAATACACACTAGACTATATGATGCTATTTCAATAAATAAATAACAAAAGAAAGAAAAAAACAGAGATAAATGACTAACCCGATTCTGTGGCCGCCATCTTGGGCTACCCGTAACTGCAGTTACGGGCATCGGCTTAATACCAGT
Unaligned ( gi|10 ): TTAGATAAATAAGCAAAAAGTCCCATGATACTGAAACTACTCCTACAGTAAAATACCAACGTGGTGGCTAGTAATGGGAATCCGTATTGCCAGTTACTCTCAGCGCGAATATGCAGTTACACGCATCATTCTGGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATATAACAGTTTAGTTATTTATCGTA
Unaligned ( gi|12 ): TTACAGCATCATCTGTTCTTTTTTCATACAACGTAACACGGAGTAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAAGTATTGTCCGTATTGGAATAATTTAACAGTTAGTTATTTATCGTATGATAAAACAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGTTACGGGTATCGGCTTA
Unaligned ( gi|15 ): ATCTTTTAATTTTGGCCTTTAACCTTTTAATATATATAAATATAATCAAAATATCTTTAACCCCCTATACGTGTGTATATATCAGTTGGGCCTATACGACTATCCAAGTCAGG
Unaligned ( gi|16 ): GTTTAGTTATTTATCGTATGATAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGATACGGGCATCGGCTTAATACCAG
Unaligned ( gi|19 ): CAACTTCGTTATGTGTACCGGTATATAAATACAGAATTTGTTCAATGTATAATCTTTTGATTTCC
Unaligned ( gi|22 ): ATGCTTCGGATCCAATTGATTCAAGGCAATATTTACTTTGGTAGTTACGGGTA
Unaligned ( gi|23 ): AGTTACGGGCATCGGCTTAATACCAGT
Alignments
lowQualScore : 1111 44444444444444444444444 1111 1111 11111 1111 33333333333 1111111 444444444444 111111 111111 2222222222 2222 111 11 11 111 666666666666666666666 11111 11111 11 11 11 11111111111 11 111
lowQualScore : 6 77 66 4 5 0000 99999999999999999999999 5 7 2222 1111 44444 5 2222 1 66666666666 2222222 55 5 66 5 5 666666666666 777777 4 222222 4 4 1111111111 1 5555 3 111 00 88 1 6 6 1 999 111 6 6 6 1 777777777777777777777 1 66 5 5 44444 6 6 0 77777 0 8 1 11 5 8 8 0 4 11 11 8 0 6 44444444444 8 11 0 1 22 444 11 99 0 8 0
lowQualScore : . .. .. . . .... ....................... . . .... .... ..... . .... . ........... ....... .. . .. . . ............ ...... . ...... . . .......... . .... . ... .. .. . . . . ... ... . . . . ..................... . .. . . ..... . . . ..... . . . .. . . . . . .. .. . . . ........... . .. . . .. ... .. .. . . .
lowQualScore : 7 99 99 5 0 4444 66666666666666666666666 7 1 4444 6666 33333 7 1111 4 55555555555 8888888 44 0 99 0 0 000000000000 222222 4 888888 4 4 9999999999 4 7777 6 777 22 00 0 7 7 7 333 777 7 7 7 0 666666666666666666666 7 99 0 0 33333 7 7 6 66666 8 0 4 00 0 0 0 8 0 00 00 0 6 0 88888888888 0 00 8 0 22 000 66 33 8 0 8
consensus : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACT--TGAAA----T-----AT-----------GA-AGAAAAACCCAATGTTTT-TTAAACT--T-CTTTAATTACTTA-----GCGTTA-C----AAATAC---NA-A----GAACTGT---CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-C--CTCTATCTTTGTAAT---GGAGACT-ACAGTCNCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----AATTATTTAG-AATTT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
Reference ( family-1155 ) : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACT--TGAAA----T-----AT-----------GA-AGAAAAACCCAATGTTTT-TTAAACT--T-CTTTAATTACTTA-----GCGTTA-C----AAATAC---NA-A----GAACTGT---CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-C--CTCTATCTTTGTAAT---GGAGACT-ACAGTCNCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----AATTATTTAG-AATTT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
gi|1 : ATGAAAT--GG-AAT-ATCCCTT-----GACGG-GG-T---ACTAGGCATAGTTATTTAG-AATTTTAGTTGGACGA-TCCATTATCATCAACCAATTGAATAGAAAATTGGTGATATGA-TTTTACTTGTACGCATTATTAATTACAATTTTTCT---GATACA---GTCCCATGCTTCTGAAGGTGT-TTTATTTG
gi|11 : catccactattttaattgtgataactaatacatatgttatgttgatagtaatgtcatatggtgatgcgagacgttgagtggatacgcaaaatgaaatttattataAACT--TATTTTAATTATTTC-----GTGTTA-C----AAA------AG-A----TAATT-T---CTAATGT-AGGA-AA--ATTTCTA-CAAAG-TGCGACGAAATTAAAGA-ATTCT------CA-TA------TA-TTGT-AGT---------------------------TCTTTGTAATATCGGAGACT-AC--TCACTC-TCCACTAT-GTTATTTTTGCTGGTATAT-------GTA---TATA-ATAATTGT-ATTTATA-TTTATCCAATGAGA--TT--G--------------TGGCTCACGGAAATAAAG-AATCAATCgatgtcaatgaagaaaataattattatttcaaagcatcccgatccctaagaacagtgaacatattttgaggaagacgtcagcatatattattgctcgtacaacaaagtcgactaatgatagtacatcgtcttaatgttaatttctcattaatacatttgaaacaagcaattatgttttggttagtagcagatccactttttgaaaattcttattaactttgttttccagttacattccacatttttagaaaagttcattagtacgggcatcaatagtggcagttacgtgaacatcatccaaagcacgttacacggcatatcaacttgatgtcaattttggctgatgttggagttcttatgatacgaaacttttgttccaatcagttccaatttataaaaaatatacctagactatgaaagctgatttcataaattaaataactaaaagaacaaacaagagtaaatgactaaccgttctgtggccgccatcttgggctacccccaactgcattacggggcatcggccttaataccagtgatactctggccactatatatatactataccgaggtagatttttgctttaaattttcaatcaccataagcacgcattccctccgccctcccttaaagctcaaaactctgcaattccgcggccctgacataggaaatcgattttggattcaagaccttgtatacccgtatgttagcaattatcacgtcaaatttgttttgttgacactaaatacttaatatattgtagatgattataaatagggtgcatattgctgaattttacccatttgcatccatttgcatcacatgcagataatataaggttttatggcatattttgggaaaaacttcaattttcatgaaaaattcagccttttgtttttaaataccatttgccatcagcgggccttgcctgactttggaaaaacttagataaatatgc
gi|13 : TATTCTAAA-GTGT--CATCTAT--ACTA-TGAC------------T-----AT-----------GA-AGAAAAACCCAATG-TTT-TTAAACT--T-CTTCAATTACTTG-----GCGTTA-CTTGTAAATAC---AAGA----GAG---------AATT-----------GTGTCTA-CAATG-TGCAAC----------C-ATTCT------CA-TA------CA-TTGT-AAacgtttatcatttatgttg
gi|14 : acatgatatagaggattagttccatt------CA-TG------TA-TTGT-AAT----------AATCATATCC--CTCTATC-TTGTAAT----GAGAC--AC--TCACTCTTCCACTA---TTGTTTTTG-TGATATATTTACAA-ATA---TATATATAATT-T-ATATATGCTGTGCTAACGGAAA------A--------------TGG--CTATGAAAT--GG-AAT-AATCCTT-----
gi|17 : attctaacata----GAACTGT---CTAATTA-AGGA-AA--TTGTCTA-CAATG-TGCAAC----------A-ATTTT------CA-TATACTAGTA-TTGT-AAT----------
gi|18 : T--CATCTAG--ACTA-TGAATAATGAAA-----------------------AG-AGAAAAACCTAATG--TT-CTAAACtcttgtatatacatgtattgtaata
gi|20 : atctacaatgatatagaggattagttttctgtGTATCCACTGGACATTTCCG--------------TGGCTCTATGAAAT--GG-AAT-AATCCTTGCATAGGCGG-GT-TTA
gi|21 : TATTCTAAG-GTGT--CTTCTAT--ATTA-TGACT--TGAGA----
gi|3 : tacatagaggatgaattccatttTGTTCTAAA-GTGT--CATATAT--ACTG-TGATT--TGAAA----TTATACAT-----------GA-AGAAAAACCCAATGTTTT-TTACACT----CTTTAAATACTTA-----A-GTTA-C----AAATAC---CA-A----GAA-TGT---CTA-TTT-AGGA-AA--TTTTTTAACAATG-TGCACC----------T--TTCT------CA-TA------CA-TTGT-AATTCTCGTTAATAATCATAT-CT-CTC-ATCTTTGCAAT---GGAGACT-ACAGTCCCTC-TCCACTAT-ATTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATGTG-TGTATCCGTTGACC--TT--GTGGTTTACGAAAAATGGCTTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GGTTTACACTAG----CATTATTTAGAAATTT--ATT-GACGAGTCCA-T-----------------------TTT--T-------TTTTTTCTTGC-CGCAT--TTAGTTGTGAATTTTTTCTGGATAC-TC--CCCCATGCTTCTG-GGGCATATTTATTTGATTAAaa
gi|4 : atctacaatgatatagaggattagttcattTATTCTAAAAGTGT--CATCTAT--A--------T--TGATA----A-----AT-----------GA-AGGAAAATGCAATGTTT----AAACT--T-CTTTAATTAACTA-----GCGTTA-C----AAATAC---CA-CCTGCGAACTAT---CTAATTT-AGGAGAA--AAGTCTA-CAATG-TGCAAC----------ACATTCTT-----CAGTA------TACTTGTTAAT----------AATCATAT-CATCTCTATCTTTGAATT---GGAAGCTGACAGTCCCGC-TC-ACTATTGTTGTTTTTGTTGATATATTTACAATGTAGCTTATA-ATAATTGTGATATATG-TG-ATCCATTGAGC--TT--G----------------GTTTTATGAAAT--GGCAAT-AA-CCTT-----GACGGTGG-TTACACGAG----AAT-ATTTAG-AAATT--ATCGGACCA-TCCA-TATTAT--ACC--TTGAA-ATGAA-TT--TTATA-GATTTTTTCTT-C-CGCAT--TTAA-TGAAAA-TTTCT---GATACATCCTCCCCATGC-TCTG-ATGCGTATTTATTTGATTAAtcaaatgaaatcaaagtgaaatttgaaaagaaatcatttataattctttataaaaagtcgccttatgtagagtacatcgtctgatacatgtatatatcacgaattaaccactaataatagattgaaagaaatttgtttagtcagacaagctttttggaaaactatta
gi|5 : TATTCTAAA-GTGT--CATCTAT--A-TA-TGAT------AA----------AT-----------GA-AGGAAAATTCAATGTTTA-T-AAACT--T-CTTTAATTACCTA-----GCGTTA-C----AAATAC---CA-GCTGCGAACTAT---CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-CA-CTCTATCTTTGTAAT---GGAGACT-ACAGTCCCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCATTGAGC--TT--G--------------TGGTTTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACGAG----AATTATTTAG-AAATT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-ATGCGTATTTATTTGATTAA
gi|6 : TCTAA--ACTA-TGACT--TGAAA----T-----ATATGATATATATGA-AGAAAAACCCAATGTTTT--TAAACT--T-CTTTAATTACTTA-----GCGTTA-C----A--------------------TGT---CTAACTT-AGGA-AA--ATGTCTA-CAATG-TGCAACAATTGATTGTA-ATTCTCGTATACA-TG------TA-TTGT-AAT----------AATCA----------CATCTTTGTAAT---GGAGACA-AC--TCACTG-TCCACTTT-GTTGCTTTTGTTGATATATTTAC------------A-ATAATTGT-ATATATG-TGTATCCAATCAGC--TT--GTGGCCAACGGAAAATGGCTTTATGAAAT--GA-AAT-AATCCTT-----GACGG-GG-TTACACTAG----CATTATCTAA-AATTT--ATTGGAC-A-TCCA-TATAAT--ACC--TTAAA-ATGAATTT--ATATT-GA-TTTTTCTTGA-CGCAT--TTAATTGAAATTTTTCT---GATACATC
gi|8 : tctacatgaaataggggaagagttccattattATTCTAAC-ACGGAACATCTATGTACTAATGACT--TGAAAATGAT-----AT-----------AAGAGAAAAACCC-ATGCTTTGTTAAACTTCT-CTTTAATTACTTATTATGACGTTACC----AAGTATATAAA-A----GAAGCGTGTGCTAATGTAAGGA-AAGTATGTCTA-CAATGTTGC--C----------A-ATTTC------AA-TA------TA-CTA--AGT----------ATTTATAT-A--TTCT
gi|9 : tatgaatagagaggtaatgagttccattttcgTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAAtgtatagtaaaagtgttatctgtaataaatcatgacttcctctaaatcgtttgttagatt
blockSeqs : A AA GT C A ATAA TATATGATATATAT G T TGTT TCT TTATG C TTGT T CACCTGC GCGTGTG TA G GT A T AATTGATTGTA CGTATA G TACTAG C T TCTCGTTAAT T CAT T . TG AG A T T T AAT GCT T G C C TTGTGGTTTACGAAAAA C AA C C GCATA T T C A T . G G . T . . . T TTATAGAT . . T AT CTG AT CT .
blockSeqs : . . . T . CT TTATACAT . T TCT T . . . T CAGCTGC CTGT A . . . . AC T . . . . . T CC T . T AG C . . T AAT . . . . C TTGTGGCCAACGGAAAA C . . . . . . A . A . C . . T . . . T TTATAGAT . . A AT . AT CT .
blockSeqs : . . . C . TT ATGATAT . T TTT T . . . T ATAAAA CTAT T . . . . C . . . . . . T CT T . T AG C . . T AAT . . . . T ATTTCCG T . . . . . . A . A . G . . A . . . T ATATTGA . . A TT . AT . .
blockSeqs : . . . C . CT AAT . T AT T . . . T AAGA CTAT T . . . . A . . . . . . T CA C . A . C . . T AA . . . . T TTG T . . . . . . C . T . . . . . . . . . TT . . A A . T .
blockSeqs : . . . C . CT AT . C TT T . . . T CAA TGT T . . . . T . . . . . . T A T . . . A . . . . . . . . T TTG C . . . . . .
blockSeqs : . . . . T . . . . . . . . . . TGT T . . . . A . . . . . . . . . A A . . . . .
blockSeqs : . . . T . . . . . . A . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : CT** TATAAT***************** TT** T*** NAA******** TGT**** A*********** CN** *** AG AAT N**** ** ** ** TTATGAT**** ** AT
originalCons : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACT--TGAAA----T-----AT-----------GA-AGAAAAACCCAATGTTTT-TTAAACT--T-CTTTAATTACTTA-----GCGTTA-C----AAATAC---NA-A----GAACTGT---CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATAT-C--CTCTATCTTTGTAAT---GGAGACT-ACAGTCNCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----AATTATTTAG-AATTT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTT--TTATA-GATTTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
finalCons : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACT--TGAAATATAAT-----------------GA-AGAAAAACCCAATGTTTTT--AAACTT---CTTTAATTACTTA-----GCGTTA-C----AAATACNAA--------GAATGT----CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAACA-----------ATTCT------CA-TA------TA-TTGT-AAT----------AATCATATCN--CTCTATCTTTGTAAT---GGAGACT-ACAGTCNCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAGN----ATTATTTAG-AATTT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAA-ATGAATTTTTATGAT----TTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TACTAGGCTATGAAGCTATTTCAATAATAAAATTACAAAAGAAAAAAAAAAAAAACGAGAAAATGACTAACCCGATCTGTGGCGCCATCTTGGTGCTACTAGCAAGTGATATACCGGGGCACCATATAAATACATACCACGCGAGGTAGTTATTTTCAATTTTTCATCCATGCACACCCGCCCCCTTAAACTCAAAATCTGCATCTGCCCCTGAATAGGAATACGCATTGATAGACTCAGCACACTATATTTACATGTCCATCAACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTTCCTATGAACATTCAGCCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGACTTAGATAAATATGCAAAAAGCCCATGTACTGGAAACTACACCTATTTAAACGACCAACGTGTTTGCAAGTTACGGGTATCCGTATGCCAGTTACACTCATCGCGACTATGCAGTTACACCGCATCATTCTGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATTCAACAGTTTAGTTATTAGTTATTACGTATGATAAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTTAACTGCAGTTACGGGCATCGGCTTAATACCA
Unaligned ( gi|7 ): TCAAGGCAACATTTACTTTGGTAGTTACGGATATCATATCTAGTTACGGGTATCATTTCTCAGTTACGTGCATTCACATTAGTTACGGGCATAAATAGCGGCAGTTACACGCACCATCACTGATGTCAATTCCAATTTTATAAAAATACACACTAGACTATATGATGCTATTTCAATAAATAAATAACAAAAGAAAGAAAAAAACAGAGATAAATGACTAACCCGATTCTGTGGCCGCCATCTTGGGCTACCCGTAACTGCAGTTACGGGCATCGGCTTAATACCAGT
Unaligned ( gi|10 ): TTAGATAAATAAGCAAAAAGTCCCATGATACTGAAACTACTCCTACAGTAAAATACCAACGTGGTGGCTAGTAATGGGAATCCGTATTGCCAGTTACTCTCAGCGCGAATATGCAGTTACACGCATCATTCTGGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATATAACAGTTTAGTTATTTATCGTA
Unaligned ( gi|12 ): TTACAGCATCATCTGTTCTTTTTTCATACAACGTAACACGGAGTAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAAGTATTGTCCGTATTGGAATAATTTAACAGTTAGTTATTTATCGTATGATAAAACAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGTTACGGGTATCGGCTTA
Unaligned ( gi|15 ): ATCTTTTAATTTTGGCCTTTAACCTTTTAATATATATAAATATAATCAAAATATCTTTAACCCCCTATACGTGTGTATATATCAGTTGGGCCTATACGACTATCCAAGTCAGG
Unaligned ( gi|16 ): GTTTAGTTATTTATCGTATGATAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGATACGGGCATCGGCTTAATACCAG
Unaligned ( gi|19 ): CAACTTCGTTATGTGTACCGGTATATAAATACAGAATTTGTTCAATGTATAATCTTTTGATTTCC
Unaligned ( gi|22 ): ATGCTTCGGATCCAATTGATTCAAGGCAATATTTACTTTGGTAGTTACGGGTA
Unaligned ( gi|23 ): AGTTACGGGCATCGGCTTAATACCAGT
Alignments
lowQualScore : 555555555555555555555555 1111 11111 11111 1111 4444444444444444 444444444444 111111 111111 2222222222222222222222222 111 11 11 111 666666666666666666666 11111 11111 11 11 11 333333333333 11 111
lowQualScore : 6 77 66 4 5 666666666666666666666666 2222 0 11111 5 77 44444 5 2222 1 3333333333333333 5 55 5 66 5 5 666666666666 777777 4 222222 4 4 6666666666666666666666666 0 111 00 88 1 6 6 1 999 111 6 6 6 1 777777777777777777777 1 66 5 5 44444 6 6 0 88888 0 8 1 11 5 8 8 0 4 11 11 22 6 222222222222 8 11 0 1 22 444 11 99 0 8 0
lowQualScore : . .. .. . . ........................ .... . ..... . .. ..... . .... . ................ . .. . .. . . ............ ...... . ...... . . ......................... . ... .. .. . . . . ... ... . . . . ..................... . .. . . ..... . . . ..... . . . .. . . . . . .. .. .. . ............ . .. . . .. ... .. .. . . .
lowQualScore : 7 99 99 5 0 000000000000000000000000 1111 1 99999 7 99 33333 7 1111 4 3333333333333333 0 44 0 99 0 0 000000000000 222222 4 888888 4 4 6666666666666666666666666 1 777 22 00 0 7 7 7 333 777 7 7 7 0 666666666666666666666 7 99 0 0 33333 7 7 6 00000 8 0 4 00 0 0 0 8 0 00 00 00 0 888888888888 0 00 8 0 22 000 66 33 8 0 8
consensus : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACTTGAAA----T-ATA--------ATGAA----GAAAAACCCAATGTTTT--T-AAACTT-CT--TTAATTACTTA-----GCGTTA-C----AAATAC---CAA----GAAC--TGT-CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATATC--CTCTATCTTTGTAAT---GGAGACT-ACAGTCNCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----AATTATTTAG-AATTT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAAATGAATTTTTA-TAGAT----TTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
Reference ( family-1155 ) : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACTTGAAA----T-ATA--------ATGAA----GAAAAACCCAATGTTTT--T-AAACTT-CT--TTAATTACTTA-----GCGTTA-C----AAATAC---NAA----GAA---TGT-CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATATCN-CTCTATCTTTGTAAT---GGAGACT-ACAGTCNCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCANTGAGC--TT--G--------------TGGCTCTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACTAG----NATTATTTAG-AATTT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAAATGAATTTTTA-T-GAT----TTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAA
gi|1 : ATGAAAT--GG-AAT-ATCCCTT-----GACGG-GG-T---ACTAGGCATAGTTATTTAG-AATTTTAGTTGGACGA-TCCATTATCATCAACCAATTGAATAGAAAATTGG-T-GATATGATTTTACTTGTACGCATTATTAATTACAATTTTTCT---GATACA---GTCCCATGCTTCTGAAGGTGT-TTTATTTG
gi|11 : catccactattttaattgtgataactaatacatatgttatgttgatagtaatgtcatatggtgatgcgagacgttgagtggatacgcaaaatgaaatttattataAACTTATT--TTAATTATTTC-----GTGTTA-C----AAA------AGA----TAA---TTT-CTAATGT-AGGA-AA--ATTTCTA-CAAAG-TGCGACGAAATTAAAGA-ATTCT------CA-TA------TA-TTGT-AGT--------------------------TCTTTGTAATATCGGAGACT-AC--TCACTC-TCCACTAT-GTTATTTTTGCTGGTATAT-------GTA---TATA-ATAATTGT-ATTTATA-TTTATCCAATGAGA--TT--G--------------TGGCTCACGGAAATAAAG-AATCAATCgatgtcaatgaagaaaataattattatttcaaagcatcccgatccctaagaacagtgaacatattttgaggaagacgtcagcatatattattgctcgtacaacaaagtcgactaatgatagtacatcgtcttaatgttaatttctcattaatacatttgaaacaagcaattatgttttggttagtagcagatccactttttgaaaattcttattaactttgttttccagttacattccacatttttagaaaagttcattagtacgggcatcaatagtggcagttacgtgaacatcatccaaagcacgttacacggcatatcaacttgatgtcaattttggctgatgttggagttcttatgatacgaaacttttgttccaatcagttccaatttataaaaaatatacctagactatgaaagctgatttcataaattaaataactaaaagaacaaacaagagtaaatgactaaccgttctgtggccgccatcttgggctacccccaactgcattacggggcatcggccttaataccagtgatactctggccactatatatatactataccgaggtagatttttgctttaaattttcaatcaccataagcacgcattccctccgccctcccttaaagctcaaaactctgcaattccgcggccctgacataggaaatcgattttggattcaagaccttgtatacccgtatgttagcaattatcacgtcaaatttgttttgttgacactaaatacttaatatattgtagatgattataaatagggtgcatattgctgaattttacccatttgcatccatttgcatcacatgcagataatataaggttttatggcatattttgggaaaaacttcaattttcatgaaaaattcagccttttgtttttaaataccatttgccatcagcgggccttgcctgactttggaaaaacttagataaatatgc
gi|13 : TATTCTAAA-GTGT--CATCTAT--ACTA-TGACT----------------------ATGAA----GAAAAACCCAATGTTTT--T-AAACTT-CT--TCAATTACTTG-----GCGTTA-CTTGTAAATAC----AA----GAG---AG----AATT-----------GTGTCTA-CAATG-TGCAAC----------C-ATTCT------CA-TA------CA-TTGT-AAacgtttatcatttatgttg
gi|14 : acatgatatagaggattagttccatt------CA-TG------TA-TTGT-AAT----------AATCATATCC-CTCTATC-TTGTAAT----GAGAC--AC--TCACTCTTCCACTA---TTGTTTTTG-TGATATATTTACAA-ATA---TATATATAATT-T-ATATATGCTGTGCTAACGGAAA------A--------------TGG--CTATGAAAT--GG-AAT-AATCCTT-----
gi|17 : attctaacata----GAAC--TGT-CTAATTA-AGGA-AA--TTGTCTA-CAATG-TGCAAC----------A-ATTTT------CA-TATACTAGTA-TTGT-AAT----------
gi|18 : T--CATCTAG--ACTA-TGA-------------ATA--------ATGAAAAGAGAAAAACCTAATG-TTC--T-AAACtcttgtatatacatgtattgtaata
gi|20 : atctacaatgatatagaggattagttttctgtGTATCCACTGGACATTTCCG--------------TGGCTCTATGAAAT--GG-AAT-AATCCTTGCATAGGCGG-GT-TTA
gi|21 : TATTCTAAG-GTGT--CTTCTAT--ATTA-TGACTTGAGA----
gi|3 : tacatagaggatgaattccatttTGTTCTAAA-GTGT--CATATAT--ACTG-TGATTTGAAA----TTATAC-------ATGAA----GAAAAACCCAATGTTTT--TTACACT--CT--TTAAATACTTA-----A-GTTA-C----AAATAC---CAA----GAA---TGT-CTA-TTT-AGGA-AA--TTTTTTAACAATG-TGCACC----------T--TTCT------CA-TA------CA-TTGT-AATTCTCGTTAATAATCATATCT-CTC-ATCTTTGCAAT---GGAGACT-ACAGTCCCTC-TCCACTAT-ATTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATGTG-TGTATCCGTTGACC--TT--GTGGTTTACGAAAAATGGCTTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GGTTTACACTAG----CATTATTTAGAAATTT--ATT-GACGAGTCCA-T----------------------TTTT-------T----TTTTTCTTGC-CGCAT--TTAGTTGTGAATTTTTTCTGGATAC-TC--CCCCATGCTTCTG-GGGCATATTTATTTGATTAAaa
gi|4 : atctacaatgatatagaggattagttcattTATTCTAAAAGTGT--CATCTAT--A--------TTGA------T-A-A--------ATGAA----GGAAAATGCAATGTTT-----AAACTT-CT--TTAATTAACTA-----GCGTTA-C----AAATAC---CACCTGCGAAC--TAT-CTAATTT-AGGAGAA--AAGTCTA-CAATG-TGCAAC----------ACATTCTT-----CAGTA------TACTTGTTAAT----------AATCATATCATCTCTATCTTTGAATT---GGAAGCTGACAGTCCCGC-TC-ACTATTGTTGTTTTTGTTGATATATTTACAATGTAGCTTATA-ATAATTGTGATATATG-TG-ATCCATTGAGC--TT--G----------------GTTTTATGAAAT--GGCAAT-AA-CCTT-----GACGGTGG-TTACACGAG----AAT-ATTTAG-AAATT--ATCGGACCA-TCCA-TATTAT--ACC--TTGAAATGAA-TTTTA-TAGAT----TTTTTCTT-C-CGCAT--TTAA-TGAAAA-TTTCT---GATACATCCTCCCCATGC-TCTG-ATGCGTATTTATTTGATTAAtcaaatgaaatcaaagtgaaatttgaaaagaaatcatttataattctttataaaaagtcgccttatgtagagtacatcgtctgatacatgtatatatcacgaattaaccactaataatagattgaaagaaatttgtttagtcagacaagctttttggaaaactatta
gi|5 : TATTCTAAA-GTGT--CATCTAT--A-TA-TGA-----------T-A-A--------ATGAA----GGAAAATTCAATGTTTA--T-AAACTT-CT--TTAATTACCTA-----GCGTTA-C----AAATAC---CAGCTGCGAAC--TAT-CTAATTT-AGGA-AA--ATGTCTA-CAATG-TGCAAC----------A-ATTCT------CA-TA------TA-TTGT-AAT----------AATCATATCA-CTCTATCTTTGTAAT---GGAGACT-ACAGTCCCTC-TCCACTAT-GTTGTTTTTGTTGATATATTTACAATGTA---TATA-ATAATTGT-ATATATG-TGTATCCATTGAGC--TT--G--------------TGGTTTTATGAAAT--GG-AAT-AATCCTT-----GACGG-GG-TTACACGAG----AATTATTTAG-AAATT--ATCGGACGA-TCCA-TATTAT--ACC--TTGAAATGAATTTTTA-TAGAT----TTTTTCTTGC-CGCAT--TTAATTGAAAATTTTCT---GATACATCCTCCCCATGCTTCTG-ATGCGTATTTATTTGATTAA
gi|6 : TCTAA--ACTA-TGACTTGAAA----T-ATATGATATATATGAA----GAAAAACCCAATGTTTT--T-AAACTT-CT--TTAATTACTTA-----GCGTTA-C----------------------A---TGT-CTAACTT-AGGA-AA--ATGTCTA-CAATG-TGCAACAATTGATTGTA-ATTCTCGTATACA-TG------TA-TTGT-AAT----------AATCA---------CATCTTTGTAAT---GGAGACA-AC--TCACTG-TCCACTTT-GTTGCTTTTGTTGATATATTTAC------------A-ATAATTGT-ATATATG-TGTATCCAATCAGC--TT--GTGGCCAACGGAAAATGGCTTTATGAAAT--GA-AAT-AATCCTT-----GACGG-GG-TTACACTAG----CATTATCTAA-AATTT--ATTGGAC-A-TCCA-TATAAT--ACC--TTAAAATGAATTTATATT-GA-----TTTTTCTTGA-CGCAT--TTAATTGAAATTTTTCT---GATACATC
gi|8 : tctacatgaaataggggaagagttccattattATTCTAAC-ACGGAACATCTATGTACTAATGACTTGAAAATGAT-ATA--------A--GA----GAAAAACCCA-TGCTTTGTT-AAACTT-CTCTTTAATTACTTATTATGACGTTACC----AAGTATATAAAA----GAAGCGTGTGCTAATGTAAGGA-AAGTATGTCTA-CAATGTTGC--C----------A-ATTTC------AA-TA------TA-CTA--AGT----------ATTTATA-------TATTCTTGTA
gi|9 : tatgaatagagaggtaatgagttccattttcgTCCCCATGCTTCTG-AGGCGTATTTATTTGATTAAtagtaaaagtgttatctgtaataaatcatgacttcctctaaatcgtttgttagatt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TACTAGGCTATGAAGCTATTTCAATAATAAAATTACAAAAGAAAAAAAAAAAAAACGAGAAAATGACTAACCCGATCTGTGGCGCCATCTTGGTGCTACTAGCAAGTGATATACCGGGGCACCATATAAATACATACCACGCGAGGTAGTTATTTTCAATTTTTCATCCATGCACACCCGCCCCCTTAAACTCAAAATCTGCATCTGCCCCTGAATAGGAATACGCATTGATAGACTCAGCACACTATATTTACATGTCCATCAACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTTCCTATGAACATTCAGCCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGACTTAGATAAATATGCAAAAAGCCCATGTACTGGAAACTACACCTATTTAAACGACCAACGTGTTTGCAAGTTACGGGTATCCGTATGCCAGTTACACTCATCGCGACTATGCAGTTACACCGCATCATTCTGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATTCAACAGTTTAGTTATTAGTTATTACGTATGATAAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTTAACTGCAGTTACGGGCATCGGCTTAATACCA
Unaligned ( gi|7 ): TCAAGGCAACATTTACTTTGGTAGTTACGGATATCATATCTAGTTACGGGTATCATTTCTCAGTTACGTGCATTCACATTAGTTACGGGCATAAATAGCGGCAGTTACACGCACCATCACTGATGTCAATTCCAATTTTATAAAAATACACACTAGACTATATGATGCTATTTCAATAAATAAATAACAAAAGAAAGAAAAAAACAGAGATAAATGACTAACCCGATTCTGTGGCCGCCATCTTGGGCTACCCGTAACTGCAGTTACGGGCATCGGCTTAATACCAGT
Unaligned ( gi|10 ): TTAGATAAATAAGCAAAAAGTCCCATGATACTGAAACTACTCCTACAGTAAAATACCAACGTGGTGGCTAGTAATGGGAATCCGTATTGCCAGTTACTCTCAGCGCGAATATGCAGTTACACGCATCATTCTGGTTTTTTTCATACGTTAAACACGGATAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAGTTTGTCCGTATTGGAATAATATAACAGTTTAGTTATTTATCGTA
Unaligned ( gi|12 ): TTACAGCATCATCTGTTCTTTTTTCATACAACGTAACACGGAGTAAACCAGACACGTAATACATATGAATGAGACCAATAACTGATCTCTATGAATCAAAAGTATTGTCCGTATTGGAATAATTTAACAGTTAGTTATTTATCGTATGATAAAACAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGTTACGGGTATCGGCTTA
Unaligned ( gi|15 ): ATCTTTTAATTTTGGCCTTTAACCTTTTAATATATATAAATATAATCAAAATATCTTTAACCCCCTATACGTGTGTATATATCAGTTGGGCCTATACGACTATCCAAGTCAGG
Unaligned ( gi|16 ): GTTTAGTTATTTATCGTATGATAAAAAGCAAAAATATATTCGAGCCGTACTTTCGTCTGCCATATTGGGCTACCCGTAACTGCAGATACGGGCATCGGCTTAATACCAG
Unaligned ( gi|19 ): CAACTTCGTTATGTGTACCGGTATATAAATACAGAATTTGTTCAATGTATAATCTTTTGATTTCC
Unaligned ( gi|22 ): ATGCTTCGGATCCAATTGATTCAAGGCAATATTTACTTTGGTAGTTACGGGTA
Unaligned ( gi|23 ): AGTTACGGGCATCGGCTTAATACCAGT