lowQualScore : 11111 333333333333333333333333333333333 2222222
lowQualScore : 4 1 1 1 1 1 2 1 1 44444 7 2 11 3 777777777777777777777777777777777 1 1 11 1 1 1 444 1 1 44444444 1 2 4444444 555 2 3 1
lowQualScore : . . . . . . . . . ..... . . .. . ................................. . . .. . . . ... . . ........ . . ....... ... . . .
lowQualScore : 9 2 2 2 1 1 2 1 1 88888 7 2 55 3 222222222222222222222222222222222 6 1 44 1 1 1 444 2 2 44444444 3 8 4444444 000 9 1 0
consensus : AAGGATAATTTGT-ACG-C-TG-A-AATAGGACCACGG-GTCA-CCCAACA-TTAT-C--ATGCAGAATCT----A---------------AT-----ACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACAT-G--ATGGG---TGACCACAGG-TAA-CCT
Reference ( gi|1 ) : AAGGGTAATTTGT-ACG-C-TG-A-AATAGGACCACAG-GTCA-CCCAACA-TTAT-C--ATGCAGAATCG----A---------------AC-----ACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACAT-T--ATGGG---TGACCACAGG-TAA-CTT
gi|14 : AAGGATAATGTGT-ACG-C-TG-A-AATAGGACCACAG-GTCA-CCCTACA-TTAT-C--ATGTAGAATTT----A---------------AC-----ACTACGCCCT-AAAA--TA-TAA-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGA
gi|17 : agAAGGATAATGTGT-ACG-C-TG-A-A-TATGACCACAG-GTCA-CCCTACA-TTAT-C--ATGCAGAATAT----A---------------AC-----ACTACGCCCT--AAA--TA-TAG-TTCTATT-T-G-AGAAG-T-GA--------AAG-TAGA
gi|18 : gAAAGATAATTTGT-ACG-C-TG-A-AATAGAACCACAG-TTTA-CCCTACA-TTAT-C--ATGCAGAATCT----A---------------AC-----ATTACGCTTT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAA-TA
gi|16 : cAAGGATAATTTTT-ACT-C-TG-A-AATAGGAGCACAG-GTCA-CCCTACA-TGAT----A-GCAGAATCT----A---------------AC-----ACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-GAAGAAG-T-GA--------AA--TAG
gi|9 : agAAGAATAATTTG--ACG-C-TG-A-AGTAGGACCACGG-GTCATCCC--CC-TTAT-C--ATGCAAAAT--------------------------------A-----T-AAAG--TA-TAG-TTCCATT-T-A-AGAAG-T-GA--------AAG-TAG-AAACAT-G--ATGGG---TGACAACAGG-CAA-CC
gi|5 : AAGGATAATTTGT-ACA-C-TG-A-AATAGAACCACAG-GTAA-CCCATC--TTA------------------------------------AT-----ACTACGTCGT-AAAA--TA-TAG-TTCCGAT-A-A-AGAAG-T-GA--------AAG-TAGGAAACGT-G--CTGGG---TGACCACAGG-TAATCTt
gi|20 : agAAGGATAATTTGT-ACG-C-TG-A-AATAGGACCACGG-GTCA-TCC-ACA-TTTT-C--A---------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCATT-T-G-AGAAG-T-G---------AAG-TA----------------G---TGACCACAGG-TAA-C
gi|19 : AATGATAATTTGT-ACG-C-GG-A-AGTAGAACCACGG-TTCA-CCCA-CT-TTAT-C--ATGCAGAATCA----A---------------AT-----ACTACTCCGT-AAAA--TA-TAG-TTCCATT-G-A-AGAAG-T-GA--------GAG-TAcg
gi|15 : gAAGGATAACTTGT-ACG-C-TG-A-AATAGGACCACGG-GTAA-CCCACCAGTTAT-C--ATGCAGATTAT----A---------------GT-----ACTACGCCCA-AGAA--TA-TAG-TTCCATT-T-A-AAAAG-T-GA--------A
gi|29 : cagAAGGATAATTTGT-ACGTC-TG-A-ATTAGGACCACGG-GTCA-CCC-ACA-TTTT-C--A---------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-tg
gi|40 : AAGGATAATTTGT-ACG-C-TG-A-AGTAGGACCACGG-GTCA-CCCAAC--TTAT-C--ATGCAGAATCA----A---------------AT-----ACTACG
gi|2 : gAAAGATAATTTGT-TTG-C-AG-A-AATTGT-TCGTTT-GTCA-CCCAAT--TTGT-C--AAGCAATATAT----G---------------AT-----ACTACGCCGT-AAAA--TA-TAG-TTCAACT-T-A-CGACA-T-GA--------AAG-TAGAAAACAT-A--ATGGG---TGACCACAGG-TCG-CT
gi|27 : agAAGGGTAACTTAT-ACC-T-TG-A-AATAGGGCAACAG-GTCA-CCCAACG-TT-T-T--ATGCAAAATCT----A---------------AT-----ACTATGCAGT-AAA----A-TAG-TTCCATT-T-A-AGAA
gi|22 : gAAGGA-AATTTGT-ACG-C-TG-A-AATAGGACCACGG-GTCA--CCAACA-TT-T-C--ATA--------------------------------------ACGCCCT-AACA--TG-TAGTTTCCATT-T-G-AGAAGTT-GA--------AAG-TAG
gi|31 : gAAAGATAATTTGT-ACG-C-TG-A-AATAAGATCACGG-GTCA-CCC-ACA-TTTT-C--A---------------------------------------TACGCCCT-AACA--TG-TAG-TTCCACT-T-G-AGAAG-T-GA--------AAgtgaacaca
gi|32 : gAAGGATAATT-GT-ACG-C-TG-A-AATAGGACCAC-G-GTCA-CCC-ACA-TT-T-C--A---------------------------------------TACGCCCT--AAA--TG-TAG-TTCCA-T-T-G-AGAAG-T-GA--------AAG-
gi|28 : agAAGGATACTTTGT-ACG-C-TG-A-AATAGGACCACGG-ATCA-CCC-ACC-TT---------------------A---------------AT-----ACTACGCCGT-AAAA--TA-TAG-TTCCATT-A-A-TGATT-T-GA--------AAG-TA
gi|12 : cagAAGGATAATTTGT-ACG-C-TG-ACAATATGACCACGG-GTCA-CC--AC--TTTT-C--A---------------------------------------TACGCCCTAAAAA--TG-TAG-TTTCATT-T-A-CGATG-TGGA--------AAG-TA---------------GG---TGACCACAGGATAA-C
gi|35 : agAAAGATGAATTGT-ACG-T-TG-A-AACAGGACCACAG-GTCA-CCCATCT-TTTT-C--ATGCAGAATCT----A---------------AT-----ACTACACCGT-GAAA--Tactt
gi|37 : AAGCATGATTTGT-ACG-CCTG-A-AATAGGACAACGGAGTCA-CGCTACC-GTATTC--ATGCAAGATCT----A---------------AT-----ACTACGCg
gi|42 : AAGGATGATTTGT-ACG-C-TG-A-AAGAAGACCACGG-GTCA-CCCAaaat
gi|30 : agAAGGATAATTTAC-ATG-C-TG-C-AG-AAGAGTACAG-GTCG-CC-AAC-------C---TGC------------------------------------TACGCACT-AAAA--TA-TAG-TCCAGTT-C-A-AAAAG-T-GA--------AAG-TAGtct
gi|23 : agAGGGAGAATTTGT-ACA-C-TG-A-AGTTGGAATGAGG-GTCA-TTCATC--TTAT-C--ATGCAAAATGT----AAT-------------AT-----ACTACACCAT-AAAA--AA-----------------ACAAA-T-GA--------AAG-AAGAAAA
gi|21 : gAGGATAATTTGT-ACG-C-TG-A-AATAACACCACGG-GTCA-CCTATCT-TT-T-C--ATGCAGAATCT----A---------------AT-----ACTACGCCGT-AAAA--TA-TAG-TTCCATA-T-A-AGAAG-T-GA--------AAG-TA
gi|3 : AAGATAATTTGTTACG---TG-A-AATAGA--CACAG--TCA-CCCTACA-TTAT-C--ATGCAGAATAT----A---------------AC-----ATTAC-CCCA-AAAG--TA-TG---TCCATT-T-GCAGAA----GA--------AAGATA-CAAACAT-T--A-GCGTATTGACCACGGG-TAA-C
gi|7 : cagGGATAGTTTGT-ACG-C-TG-A-AATAGGACCACGG-GTCA-CCCACC--TTA------------------------------------AT-----ACTGCGCCGT-ATAA--TA-TAG-TTCCATT-T-A-TGAAG-T-GA--------AAG-TAGGAAACAT-A--CTGGG---TGATCACCAG-TAcc
gi|8 : cagatGGATAATACGT-ACT-C-TG-A-AGTAGGACCACGG-ATCA-CCCACC-----T-T--ATGCAGA--------------------------------CTACGTCCT-AAAA--CA-TAG-TTTCATT-T-C-AAAAG-T-GA--------AAG-TAG-AAACAT-G--AT--G---TGACCACCGG-TAA-CCctc
gi|33 : gacGGATAATTTGT-ACG-C-TG-A-AATAGGACCACGG-GTCA-CCC-ACA-TTTT-C--A---------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCATT-T-G-AGAAG-T-GA--------At
gi|25 : GTAATACGT-ACG-C-TG-A-AGCAGGACCACGG-GTCA-CTCACC---TAT-CTAATATATA--------A---------------AT-----ATCATGCCCT-AAAA--TA-AAG-TTCTATT-T-
gi|10 : tagaaagatacctATTTGT-ACG-C-AG-C-AGTAGGAC---GG-GTAA-CCTATCT-TT-T-C--ATGCAGAA-CGTATTA---------------AT-----ACTACCCCCT-AAAA--TA-TAG-TCCCATT-T-A-AGAAG-T-AA--------AAG-TA------------ATGGG---TGACCACAGG-TAA-Ca
gi|24 : ATTTAT-A-G-C-TCTA-AACAGGAGCACAG--TCA-C---ACC-TCATAC--AC-CAGAAACT----A---------------AC-----ACTA-GCCCT-AAAA--AAATAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-Tat
gi|4 : agatTTGT-ACG-G-TG-T-AATAGGACCACAT-GTCA-CCCACCT-TTA--C--ATGCAGAATCT----A---------------AT-----AGTACGCCGT-AAAA--TA-TAG-TTCCATA-T-G-AGAAG-T-GAAAGTGTTGAAG-TAGAAAACATGT--A-GGG---TGA--A-AGG-TAA-CC
gi|6 : TGT-ACG-C-TG-A-AACAGAAACACGG-GTCA-CCCA-CA-TCTT-C--ATGCAGAATCT----A---------------CT-----ACTACCCCGT-TAAA--TA---G-TTCCATT-TTA-AGAAG-T-GA--------AAG-TAGAAAACAT-G--AGAGA---TGACCACAGG-TAA-CCt
gi|41 : G-C-TG-A-AATTATACCACGG-GTCA-CCC-ACC-TTTT-T--ATGTAAAATAT----A---------------AT-----ACTACGCCGT-AAAA--
gi|11 : -A-AATAGGACCACGT-GTCA-CTCA-CG-TTTT-C--ATGCAGAATCT----A---------------AT-----ACTACGCCAT-AAAA--TA-TAG-TTCCATA-T-C-AGAAG-T-GA--------AAG-GAGAA---AT-G--ACTGG---TG-CCACGGG-TAG-CC
gi|38 : ggatTAGGACCACAG-GTCA-CCCTACA-TTAT-C--ATGCATAATCT----A---------------AC-----GCTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAat
gi|26 : G-GTCA-CCCA-CA-TCTT-C--ATGCAGAATCT----ACTTAGTAGTAGTACTACTTAGTACTACCCCGT-ACAA--TA---G-TTCCATT-TTA-AAAAG-T-GA--------AAG-TAGAA
gi|39 : CCTACAGTTAT-C---TGCAGAACCT----A---------------AC-----AC---ACCCT-AAAA--AC-TAA-TTC-GTTAT-G-CAGAG-T-GA--------AAG-TAGAA
gi|43 : ttaa----A---------------AT-----ACTACGCCGT-AATA--TA-TAG-TTCCATT-A-A-AGAAG-T-GA--------AAG-
gi|34 : tt-----ACTATGTCGT-AAAA--TA-TAG-TTCCATA-T-A-AAAAG-T-GA--------AAG-TAGAAAACAT-GAAATGGG---TGACCACAGT-TAA-CC
gi|36 : tctattCC-AAAACTTA-TAG-TTCCATA-T-A-AGAAG-T-GA--------AAG-TAGAAAACAG-G--AT-AG---TG--CACGGG-TAA-CTtc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AAAGCAATTACCGGGTATGAAGAATGACATCTGCTCACCTTTCTCATCTAGCAAAATAGTTAATCAGATTTTATTTAAAATGAAGGGCAAAATATGCATGGACAGCATGCA
Alignments
lowQualScore : 11111 1111111111111111111111111111
lowQualScore : 1 1 1 1 1 1 1 44444 8 2 11 3 1 1111111111111111111111111111 0 1 1 11 1 1 1 444 1 1 44444444 1 2 777777 444 2
lowQualScore : . . . . . . . ..... . . .. . . ............................ . . . .. . . . ... . . ........ . . ...... ... .
lowQualScore : 2 2 1 1 1 1 1 88888 4 1 44 6 1 1111111111111111111111111111 4 3 0 44 1 1 1 000 2 2 33333333 3 2 888888 777 7
consensus : AAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCCAACA-TTAT-C--ATGCAGAAT---CTA--------------------ATACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATG--ATGGG---TGACCACAGG-TAACCT
Reference ( family-1132 ) : AAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCCAACA-TTAT-C--ATGCAGAAT---CTA--------------------ATACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATG--ATGGG---TGACCACAGG-TAACCT
gi|1 : AAGGGTAATTTGT-A-CG-C-TGA-AATAGGACCACAG-GTCA-CCCAACA-TTAT-C--ATGCAGAAT---CGA--------------------ACACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATT--ATGGG---TGACCACAGG-TAACTT
gi|10 : ATTTGT-A-CG-C-AGC-AGTAGGAC---GG-GTAA-CCTATCT-TT-T-C--ATGCAGAACGTATTA--------------------ATACTACCCCCT-AAAA--TA-TAG-TCCCATT-T-A-AGAAG-T-AA--------AAG-TA-----------ATGGG---TGACCACAGG-TAAC
gi|11 : A-AATAGGACCACGT-GTCA-CTCA-CG-TTTT-C--ATGCAGAAT---CTA--------------------ATACTACGCCAT-AAAA--TA-TAG-TTCCATA-T-C-AGAAG-T-GA--------AAG-GAGAA---ATG--ACTGG---TG-CCACGGG-TAGCCTat
gi|12 : ggatAAGGATAATTTGT-A-CG-C-TGACAATATGACCACGG-GTCA-CC--AC--TTTT-C--A--------------------------------------TACGCCCTAAAAA--TG-TAG-TTTCATT-T-A-CGATG-TGGA--------AAG-TA--------------GG---TGACCACAGGATAACat
gi|14 : agAAGGATAATGTGT-A-CG-C-TGA-AATAGGACCACAG-GTCA-CCCTACA-TTAT-C--ATGTAGAAT---TTA--------------------ACACTACGCCCT-AAAA--TA-TAA-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAactt
gi|15 : agAAGGATAACTTGT-A-CG-C-TGA-AATAGGACCACGG-GTAA-CCCACCAGTTAT-C--ATGCAGATT---ATA--------------------GTACTACGCCCA-AGAA--TA-TAG-TTCCATT-T-A-AAAAG-T-GA--------A
gi|16 : cagAAGGATAATTTTT-A-CT-C-TGA-AATAGGAGCACAG-GTCA-CCCTACA-TGAT----A-GCAGAAT---CTA--------------------ACACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-GAAGAAG-T-GA--------AA--TAGtg
gi|17 : agAAGGATAATGTGT-A-CG-C-TGA-A-TATGACCACAG-GTCA-CCCTACA-TTAT-C--ATGCAGAAT---ATA--------------------ACACTACGCCCT--AAA--TA-TAG-TTCTATT-T-G-AGAAG-T-GA--------AAG-TAGA
gi|18 : gAAAGATAATTTGT-A-CG-C-TGA-AATAGAACCACAG-TTTA-CCCTACA-TTAT-C--ATGCAGAAT---CTA--------------------ACATTACGCTTT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAA-TA
gi|19 : cAATGATAATTTGT-A-CG-C-GGA-AGTAGAACCACGG-TTCA-CCCA-CT-TTAT-C--ATGCAGAAT---CAA--------------------ATACTACTCCGT-AAAA--TA-TAG-TTCCATT-G-A-AGAAG-T-GA--------GAG-TA
gi|2 : gAAAGATAATTTGT-T-TG-C-AGA-AATTGT-TCGTTT-GTCA-CCCAAT--TTGT-C--AAGCAATAT---ATG--------------------ATACTACGCCGT-AAAA--TA-TAG-TTCAACT-T-A-CGACA-T-GA--------AAG-TAGAAAACATA--ATGGG---TGACCACAGG-
gi|20 : agAAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-TCC-ACA-TTTT-C--A--------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCATT-T-G-AGAAG-T-G---------AAG-TA---------------G---TGACCACAGG-TAACCcgctt
gi|21 : AGGATAATTTGT-A-CG-C-TGA-AATAACACCACGG-GTCA-CCTATCT-TT-T-C--ATGCAGAAT---CTA--------------------ATACTACGCCGT-AAAA--TA-TAG-TTCCATA-T-A-AGAAG-T-GA--------AAG-TAg
gi|22 : AAGGA-AATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA--CCAACA-TT-T-C--ATA-------------------------------------ACGCCCT-AACA--TG-TAGTTTCCATT-T-G-AGAAGTT-GA--------AAG-TAG
gi|23 : gAGGGAGAATTTGT-A-CA-C-TGA-AGTTGGAATGAGG-GTCA-TTCATC--TTAT-C--ATGCAAAAT---GTAAT------------------ATACTACACCAT-AAAA--AA-----------------ACAAA-T-GA--------AAG-AAGAAAAgtgaacaca
gi|24 : gGATA-TTTAT-AGCT-C-T-A-AACAGGAGCACAG--TCA-C---ACC-TCATAC--AC-CAGAAA---CTA--------------------ACACTA-GCCCT-AAAA--AAATAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-T
gi|25 : aTAATACGT-A-CG-C-TGA-AGCAGGACCACGG-GTCA-CTCACC---TAT-CTAATATATA-------A--------------------ATATCATGCCCT-AAAA--TA-AAG-TTCTATT-T-
gi|26 : tagaaagatacctgG-GTCA-CCCA-CA-TCTT-C--ATGCAGAAT---CTACTTAGTAGTAGTACTACTTAGTACTACCCCGT-ACAA--TA---G-TTCCATT-TTA-AAAAG-T-GA--------AAG-TAGAAa
gi|27 : AAGGGTAACTTAT-A-CC-T-TGA-AATAGGGCAACAG-GTCA-CCCAACG-TT-T-T--ATGCAAAAT---CTA--------------------ATACTATGCAGT-AAA----A-TAG-TTCCATT-T-A-AGAA
gi|28 : gAAGGATACTTTGT-A-CG-C-TGA-AATAGGACCACGG-ATCA-CCCACC----------------------TTA--------------------ATACTACGCCGT-AAAA--TA-TAG-TTCCATT-A-A-TGATT-T-GA--------AAG-TA
gi|29 : cagAAGGATAATTTGT-A-CGTC-TGA-ATTAGGACCACGG-GTCA-CCC-ACA-TTTT-C--A--------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-
gi|3 : AAGATAATTTGTTA-CG---TGA-AATAGA--CACAG--TCA-CCCTACA-TTAT-C--ATGCAGAAT---ATA--------------------ACATTAC-CCCA-AAAG--TA-TG---TCCATT-T-GCAGAA----GA--------AAGATA-CAAACATT--A-GCGTATTGACCACGGG-TAACC
gi|30 : cagAAGGATAATTTAC-A-TG-C-TGC-AG-AAGAGTACAG-GTCG-CC--------------------AAC---CTG-----------------------CTACGCACT-AAAA--TA-TAG-TCCAGTT-C-A-AAAAG-T-GA--------AAG-TAGc
gi|31 : agAAAGATAATTTGT-A-CG-C-TGA-AATAAGATCACGG-GTCA-CCC-ACA-TTTT-C--A--------------------------------------TACGCCCT-AACA--TG-TAG-TTCCACT-T-G-AGAAG-T-GA--------AA
gi|32 : gAAGGATAATT-GT-A-CG-C-TGA-AATAGGACCAC-G-GTCA-CCC-ACA-TT-T-C--A--------------------------------------TACGCCCT--AAA--TG-TAG-TTCCA-T-T-G-AGAAG-T-GA--------AAG-
gi|33 : agGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCC-ACA-TTTT-C--A--------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCATT-T-G-AGAAG-T-GA--------A
gi|34 : T---CTA--------------------TTACTATGTCGT-AAAA--TA-TAG-TTCCATA-T-A-AAAAG-T-GA--------AAG-TAGAAAACATGAAATGGG---TGACCACAGT-TAACCT
gi|35 : AAAGATGAATTGT-A-CG-T-TGA-AACAGGACCACAG-GTCA-CCCATCT-TTTT-C--ATGCAGAAT---CTA--------------------ATACTACACCGT-GAAA--Ttc
gi|36 : CC-AAAACTTA-TAG-TTCCATA-T-A-AGAAG-T-GA--------AAG-TAGAAAACAGG--AT-AG---TG--CACGGG-TAACg
gi|37 : gcagccgacatccaAAGCATGATTTGT-A-CG-CCTGA-AATAGGACAACGGAGTCA-CGCTACC-GTATTC--ATGCAAGAT---CTA--------------------ATACTACGCtctt
gi|38 : TAGGACCACAG-GTCA-CCCTACA-TTAT-C--ATGCATAAT---CTA--------------------ACGCTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAaaat
gi|39 : CCTACAGTTAT-C---TGCAGAAC---CTA--------------------ACAC---ACCCT-AAAA--AC-TAA-TTC-GTTAT-G-CAGAG-T-GA--------AAG-TAGAA
gi|4 : ttaaTTGT-A-CG-G-TGT-AATAGGACCACAT-GTCA-CCCACCT-TTA--C--ATGCAGAAT---CTA--------------------ATAGTACGCCGT-AAAA--TA-TAG-TTCCATA-T-G-AGAAG-T-GAAAGTGTTGAAG-TAGAAAACATG--TAGGG---TGA--A-AGG-TAACCT
gi|40 : AAGGATAATTTGT-A-CG-C-TGA-AGTAGGACCACGG-GTCA-CCCAAC--TTAT-C--ATGCAGAAT---CAA--------------------ATACTACGt
gi|41 : gG-C-TGA-AATTATACCACGG-GTCA-CCCACCT-TT-T-T--ATGTAAAAT---ATA--------------------ATACTACGCCGT-AAAA--
gi|42 : AAGGATGATTTGT-A-CG-C-TGA-AAGAAGACCACGG-GTCA-CCCA
gi|43 : agTA--------------------ATACTACGCCGT-AATA--TA-TAG-TTCCATT-A-A-AGAAG-T-GA--------AAG-tct
gi|5 : tAAGGATAATTTGT-A-CA-C-TGA-AATAGAACCACAG-GTAA-CCCA-------T-C--------------TTA--------------------ATACTACGTCGT-AAAA--TA-TAG-TTCCGAT-A-A-AGAAG-T-GA--------AAG-TAGGAAACGTG--CTGGG---TGACCACAGG-TAATCT
gi|6 : agTGT-A-CG-C-TGA-AACAGAAACACGG-GTCA-CCCA-CA-TCTT-C--ATGCAGAAT---CTA--------------------CTACTACCCCGT-TAAA--TA---G-TTCCATT-TTA-AGAAG-T-GA--------AAG-TAGAAAACATG--AGAGA---TGACCACAGG-TAACCTt
gi|7 : GGATAGTTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCCACC----------------------TTA--------------------ATACTGCGCCGT-ATAA--TA-TAG-TTCCATT-T-A-TGAAG-T-GA--------AAG-TAGGAAACATA--CTGGG---TGATCACCAG-TA
gi|8 : cagatGGATAATACGT-A-CT-C-TGA-AGTAGGACCACGG-ATCA-CCCACC-----T-T--ATGCAGA-------------------------------CTACGTCCT-AAAA--CA-TAG-TTTCATT-T-C-AAAAG-T-GA--------AAG-TAG-AAACATG--AT--G---TGACCACCGG-TAACCTctc
gi|9 : gacAAGAATAATTTG--A-CG-C-TGA-AGTAGGACCACGG-GTCATCCC--CC-TTAT-C--ATGCAAAAT-------------------------------A-----T-AAAG--TA-TAG-TTCCATT-T-A-AGAAG-T-GA--------AAG-TAG-AAACATG--ATGGG---TGACAACAGG-CAACCTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAGCAATTACCGGGTATGAAGAATGACATCTGCTCACCTTTCTCATCTAGCAAAATAGTTAATCAGATTTTATTTAAAATGAAGGGCAAAATATGCATGGACAGCATGCA
Alignments
lowQualScore : 11111 1111111111111111111111111111
lowQualScore : 1 1 1 1 1 1 1 44444 8 2 11 3 1 1111111111111111111111111111 0 1 1 11 1 1 1 444 1 1 44444444 1 2 777777 444 2
lowQualScore : . . . . . . . ..... . . .. . . ............................ . . . .. . . . ... . . ........ . . ...... ... .
lowQualScore : 2 2 1 1 1 1 1 88888 4 1 44 6 1 1111111111111111111111111111 4 3 0 44 1 1 1 000 2 2 33333333 3 2 888888 777 7
consensus : AAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCCAACA-TTAT-C--ATGCAGAAT---CTA--------------------ATACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATG--ATGGG---TGACCACAGG-TAACCT
Reference ( family-1132 ) : AAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCCAACA-TTAT-C--ATGCAGAAT---CTA--------------------ATACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATG--ATGGG---TGACCACAGG-TAACCT
gi|1 : AAGGGTAATTTGT-A-CG-C-TGA-AATAGGACCACAG-GTCA-CCCAACA-TTAT-C--ATGCAGAAT---CGA--------------------ACACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATT--ATGGG---TGACCACAGG-TAACTT
gi|10 : ATTTGT-A-CG-C-AGC-AGTAGGAC---GG-GTAA-CCTATCT-TT-T-C--ATGCAGAACGTATTA--------------------ATACTACCCCCT-AAAA--TA-TAG-TCCCATT-T-A-AGAAG-T-AA--------AAG-TA-----------ATGGG---TGACCACAGG-TAAC
gi|11 : A-AATAGGACCACGT-GTCA-CTCA-CG-TTTT-C--ATGCAGAAT---CTA--------------------ATACTACGCCAT-AAAA--TA-TAG-TTCCATA-T-C-AGAAG-T-GA--------AAG-GAGAA---ATG--ACTGG---TG-CCACGGG-TAGCCTat
gi|12 : ggatAAGGATAATTTGT-A-CG-C-TGACAATATGACCACGG-GTCA-CC--AC--TTTT-C--A--------------------------------------TACGCCCTAAAAA--TG-TAG-TTTCATT-T-A-CGATG-TGGA--------AAG-TA--------------GG---TGACCACAGGATAACat
gi|14 : agAAGGATAATGTGT-A-CG-C-TGA-AATAGGACCACAG-GTCA-CCCTACA-TTAT-C--ATGTAGAAT---TTA--------------------ACACTACGCCCT-AAAA--TA-TAA-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAactt
gi|15 : agAAGGATAACTTGT-A-CG-C-TGA-AATAGGACCACGG-GTAA-CCCACCAGTTAT-C--ATGCAGATT---ATA--------------------GTACTACGCCCA-AGAA--TA-TAG-TTCCATT-T-A-AAAAG-T-GA--------A
gi|16 : cagAAGGATAATTTTT-A-CT-C-TGA-AATAGGAGCACAG-GTCA-CCCTACA-TGAT----A-GCAGAAT---CTA--------------------ACACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-GAAGAAG-T-GA--------AA--TAGtg
gi|17 : agAAGGATAATGTGT-A-CG-C-TGA-A-TATGACCACAG-GTCA-CCCTACA-TTAT-C--ATGCAGAAT---ATA--------------------ACACTACGCCCT--AAA--TA-TAG-TTCTATT-T-G-AGAAG-T-GA--------AAG-TAGA
gi|18 : gAAAGATAATTTGT-A-CG-C-TGA-AATAGAACCACAG-TTTA-CCCTACA-TTAT-C--ATGCAGAAT---CTA--------------------ACATTACGCTTT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAA-TA
gi|19 : cAATGATAATTTGT-A-CG-C-GGA-AGTAGAACCACGG-TTCA-CCCA-CT-TTAT-C--ATGCAGAAT---CAA--------------------ATACTACTCCGT-AAAA--TA-TAG-TTCCATT-G-A-AGAAG-T-GA--------GAG-TA
gi|2 : gAAAGATAATTTGT-T-TG-C-AGA-AATTGT-TCGTTT-GTCA-CCCAAT--TTGT-C--AAGCAATAT---ATG--------------------ATACTACGCCGT-AAAA--TA-TAG-TTCAACT-T-A-CGACA-T-GA--------AAG-TAGAAAACATA--ATGGG---TGACCACAGG-
gi|20 : agAAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-TCC-ACA-TTTT-C--A--------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCATT-T-G-AGAAG-T-G---------AAG-TA---------------G---TGACCACAGG-TAACCcgctt
gi|21 : AGGATAATTTGT-A-CG-C-TGA-AATAACACCACGG-GTCA-CCTATCT-TT-T-C--ATGCAGAAT---CTA--------------------ATACTACGCCGT-AAAA--TA-TAG-TTCCATA-T-A-AGAAG-T-GA--------AAG-TAg
gi|22 : AAGGA-AATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA--CCAACA-TT-T-C--ATA-------------------------------------ACGCCCT-AACA--TG-TAGTTTCCATT-T-G-AGAAGTT-GA--------AAG-TAG
gi|23 : gAGGGAGAATTTGT-A-CA-C-TGA-AGTTGGAATGAGG-GTCA-TTCATC--TTAT-C--ATGCAAAAT---GTAAT------------------ATACTACACCAT-AAAA--AA-----------------ACAAA-T-GA--------AAG-AAGAAAAgtgaacaca
gi|24 : gGATA-TTTAT-AGCT-C-T-A-AACAGGAGCACAG--TCA-C---ACC-TCATAC--AC-CAGAAA---CTA--------------------ACACTA-GCCCT-AAAA--AAATAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-T
gi|25 : aTAATACGT-A-CG-C-TGA-AGCAGGACCACGG-GTCA-CTCACC---TAT-CTAATATATA-------A--------------------ATATCATGCCCT-AAAA--TA-AAG-TTCTATT-T-
gi|26 : tagaaagatacctgG-GTCA-CCCA-CA-TCTT-C--ATGCAGAAT---CTACTTAGTAGTAGTACTACTTAGTACTACCCCGT-ACAA--TA---G-TTCCATT-TTA-AAAAG-T-GA--------AAG-TAGAAa
gi|27 : AAGGGTAACTTAT-A-CC-T-TGA-AATAGGGCAACAG-GTCA-CCCAACG-TT-T-T--ATGCAAAAT---CTA--------------------ATACTATGCAGT-AAA----A-TAG-TTCCATT-T-A-AGAA
gi|28 : gAAGGATACTTTGT-A-CG-C-TGA-AATAGGACCACGG-ATCA-CCCACC----------------------TTA--------------------ATACTACGCCGT-AAAA--TA-TAG-TTCCATT-A-A-TGATT-T-GA--------AAG-TA
gi|29 : cagAAGGATAATTTGT-A-CGTC-TGA-ATTAGGACCACGG-GTCA-CCC-ACA-TTTT-C--A--------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-
gi|3 : AAGATAATTTGTTA-CG---TGA-AATAGA--CACAG--TCA-CCCTACA-TTAT-C--ATGCAGAAT---ATA--------------------ACATTAC-CCCA-AAAG--TA-TG---TCCATT-T-GCAGAA----GA--------AAGATA-CAAACATT--A-GCGTATTGACCACGGG-TAACC
gi|30 : cagAAGGATAATTTAC-A-TG-C-TGC-AG-AAGAGTACAG-GTCG-CC--------------------AAC---CTG-----------------------CTACGCACT-AAAA--TA-TAG-TCCAGTT-C-A-AAAAG-T-GA--------AAG-TAGc
gi|31 : agAAAGATAATTTGT-A-CG-C-TGA-AATAAGATCACGG-GTCA-CCC-ACA-TTTT-C--A--------------------------------------TACGCCCT-AACA--TG-TAG-TTCCACT-T-G-AGAAG-T-GA--------AA
gi|32 : gAAGGATAATT-GT-A-CG-C-TGA-AATAGGACCAC-G-GTCA-CCC-ACA-TT-T-C--A--------------------------------------TACGCCCT--AAA--TG-TAG-TTCCA-T-T-G-AGAAG-T-GA--------AAG-
gi|33 : agGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCC-ACA-TTTT-C--A--------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCATT-T-G-AGAAG-T-GA--------A
gi|34 : T---CTA--------------------TTACTATGTCGT-AAAA--TA-TAG-TTCCATA-T-A-AAAAG-T-GA--------AAG-TAGAAAACATGAAATGGG---TGACCACAGT-TAACCT
gi|35 : AAAGATGAATTGT-A-CG-T-TGA-AACAGGACCACAG-GTCA-CCCATCT-TTTT-C--ATGCAGAAT---CTA--------------------ATACTACACCGT-GAAA--Ttc
gi|36 : CC-AAAACTTA-TAG-TTCCATA-T-A-AGAAG-T-GA--------AAG-TAGAAAACAGG--AT-AG---TG--CACGGG-TAACg
gi|37 : gcagccgacatccaAAGCATGATTTGT-A-CG-CCTGA-AATAGGACAACGGAGTCA-CGCTACC-GTATTC--ATGCAAGAT---CTA--------------------ATACTACGCtctt
gi|38 : TAGGACCACAG-GTCA-CCCTACA-TTAT-C--ATGCATAAT---CTA--------------------ACGCTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAaaat
gi|39 : CCTACAGTTAT-C---TGCAGAAC---CTA--------------------ACAC---ACCCT-AAAA--AC-TAA-TTC-GTTAT-G-CAGAG-T-GA--------AAG-TAGAA
gi|4 : ttaaTTGT-A-CG-G-TGT-AATAGGACCACAT-GTCA-CCCACCT-TTA--C--ATGCAGAAT---CTA--------------------ATAGTACGCCGT-AAAA--TA-TAG-TTCCATA-T-G-AGAAG-T-GAAAGTGTTGAAG-TAGAAAACATG--TAGGG---TGA--A-AGG-TAACCT
gi|40 : AAGGATAATTTGT-A-CG-C-TGA-AGTAGGACCACGG-GTCA-CCCAAC--TTAT-C--ATGCAGAAT---CAA--------------------ATACTACGt
gi|41 : gG-C-TGA-AATTATACCACGG-GTCA-CCCACCT-TT-T-T--ATGTAAAAT---ATA--------------------ATACTACGCCGT-AAAA--
gi|42 : AAGGATGATTTGT-A-CG-C-TGA-AAGAAGACCACGG-GTCA-CCCA
gi|43 : agTA--------------------ATACTACGCCGT-AATA--TA-TAG-TTCCATT-A-A-AGAAG-T-GA--------AAG-tct
gi|5 : tAAGGATAATTTGT-A-CA-C-TGA-AATAGAACCACAG-GTAA-CCCA-------T-C--------------TTA--------------------ATACTACGTCGT-AAAA--TA-TAG-TTCCGAT-A-A-AGAAG-T-GA--------AAG-TAGGAAACGTG--CTGGG---TGACCACAGG-TAATCT
gi|6 : agTGT-A-CG-C-TGA-AACAGAAACACGG-GTCA-CCCA-CA-TCTT-C--ATGCAGAAT---CTA--------------------CTACTACCCCGT-TAAA--TA---G-TTCCATT-TTA-AGAAG-T-GA--------AAG-TAGAAAACATG--AGAGA---TGACCACAGG-TAACCTt
gi|7 : GGATAGTTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCCACC----------------------TTA--------------------ATACTGCGCCGT-ATAA--TA-TAG-TTCCATT-T-A-TGAAG-T-GA--------AAG-TAGGAAACATA--CTGGG---TGATCACCAG-TA
gi|8 : cagatGGATAATACGT-A-CT-C-TGA-AGTAGGACCACGG-ATCA-CCCACC-----T-T--ATGCAGA-------------------------------CTACGTCCT-AAAA--CA-TAG-TTTCATT-T-C-AAAAG-T-GA--------AAG-TAG-AAACATG--AT--G---TGACCACCGG-TAACCTctc
gi|9 : gacAAGAATAATTTG--A-CG-C-TGA-AGTAGGACCACGG-GTCATCCC--CC-TTAT-C--ATGCAAAAT-------------------------------A-----T-AAAG--TA-TAG-TTCCATT-T-A-AGAAG-T-GA--------AAG-TAG-AAACATG--ATGGG---TGACAACAGG-CAACCTt
blockSeqs : T G T C C A T ACCAG T A TA T G ATCTACTTAGTAGTAGTACTACTTA C A CT A T A GA T G AAGTGTTG A A GAAATG TAT A
blockSeqs : . . . . . . . TACAG T T . T G ACGTATTA A . . . . . TA . . . . A GACT . .
blockSeqs : . . . . . . . ATCT A . . T G ATGTAAT C . . . . . GC . . . . A AATG . .
blockSeqs : . . . . . . . TACA A . . T G ATCTA C . . . . . TA . . . . A GTAG . .
blockSeqs : . . . . . . . TACA A . . T G ATTTA C . . . . . A . . . . A GCTG . .
blockSeqs : . . . . . . . TACA A . . T G TTATA C . . . . . C . . . . A GAGA . .
blockSeqs : . . . . . . . TACA A . . T G ATCTA C . . . . . A . . . . C ACTG . .
blockSeqs : . . . . . . . ATCT A . . A G ATATA T . . . . . G . . . . A GATG . .
blockSeqs : . . . . . . . AACA G . . T A ATCTA G . . . . . A . . . . A ATG . .
blockSeqs : . . . . . . . AACG T . . T G ATCAA G . . . . . G . . . . A TAG . .
blockSeqs : . . . . . . . TACA A . . T A ATATG C . . . . . G . . . . A GAT . .
blockSeqs : . . . . . . . ATCT A . . C G ATCTA G . . . . . A . . . . G GAT . .
blockSeqs : . . . . . . . TACC A . . T T AACTA C . . . . . A . . . . A . . .
blockSeqs : . . . . . . . TACA T . . T G ATCTA A . . . . . G . . . . G . . .
blockSeqs : . . . . . . . ACCT T . . T A ATATA C . . . . . A . . . . .
blockSeqs : . . . . . . . ACCT A . . T G ACCTG C . . . . . G . . . . .
blockSeqs : . . . . . . . ACG T . . T G ATCTA G . . . . . G . . . . .
blockSeqs : . . . . . . . ACT T . . T A ATCTA G . . . . . A . . . . .
blockSeqs : . . . . . . . AAT T . . T T ATCTA G . . . . . A . . . . .
blockSeqs : . . . . . . . ACA A . . T G ACCTA C . . . . . G . . . .
blockSeqs : . . . . . . . ATC A . . T G ATCTA C . . . . . A . . . .
blockSeqs : . . . . . . . ACC A . . T G ATCAA C . . . . . G . . . .
blockSeqs : . . . . . . . ACC A . . T A ATATA C . . . . . G . . . .
blockSeqs : . . . . . . . ACA A . . T G ATCTA C . . . . . G . . . .
blockSeqs : . . . . . . . ACC T . . T G TTA C . . . . . A . . . .
blockSeqs : . . . . . . . ACA A . . T A TTA G . . . . . A . . . .
blockSeqs : . . . . . . . ACA . . . . . TTA G . . . . . G . . . .
blockSeqs : . . . . . . . ACA . . . . . AT C . . . . . G . . . .
blockSeqs : . . . . . . . ACA . . . . . A C . . . . . G . . . .
blockSeqs : . . . . . . . AAC . . . . . . C . . . . . A . . . .
blockSeqs : . . . . . . . ACA . . . . . . G . . . . . A . . .
blockSeqs : . . . . . . . ACC . . . . . . G . . . . . A . . .
blockSeqs : . . . . . . . ACC . . . . . . G . . . . . C . . .
blockSeqs : . . . . . AC . . . . . . G . . . . . A
blockSeqs : . . . CC . . . . . . G . . . . . .
blockSeqs : . . A . . . . . . G . . . . .
blockSeqs : . . . . . . . . . C . .
blockSeqs : . . .
blockSeqCons : ACN**
originalCons : AAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCCAACA-TTAT-C--ATGCAGAAT---CTA--------------------ATACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATG--ATGGG---TGACCACAGG-TAACCT
finalCons : AAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCA-CCCACN--TTAT-C--ATGCAGAAT---CTA--------------------ATACTACGCCCT-AAAA--TA-TAG-TTCCATT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATG--ATGGG---TGACCACAGG-TAACCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAGCAATTACCGGGTATGAAGAATGACATCTGCTCACCTTTCTCATCTAGCAAAATAGTTAATCAGATTTTATTTAAAATGAAGGGCAAAATATGCATGGACAGCATGCA
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 1 1 1 1 1 1 1 6 3 333 6 2 11 6666666666666666666666666666666666 0 1 1 11 1 1 1 1 222 1 1 44444444 1 2 777777 444 2
lowQualScore : . . . . . . . . . ... . . .. .................................. . . . .. . . . . ... . . ........ . . ...... ... .
lowQualScore : 2 2 1 1 1 1 0 2 1 444 0 1 44 7777777777777777777777777777777777 4 3 0 44 1 1 1 1 999 2 2 33333333 3 2 888888 777 7
consensus : AAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCAC-CC-A-CN--TTAT-C--ATGCAGAAT---CTA--------------------ATACTACGCCCT-AAAA--TA-TAG-TTCCA-TT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATG--ATGGG---TGACCACAGG-TAACCT
Reference ( family-1132 ) : AAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCAC-CC-A-CN--TTAT-C--ATGCAGAAT---CTA--------------------ATACTACGCCCT-AAAA--TA-TAG-TTCCA-TT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATG--ATGGG---TGACCACAGG-TAACCT
gi|1 : AAGGGTAATTTGT-A-CG-C-TGA-AATAGGACCACAG-GTCAC-CC-AACA--TTAT-C--ATGCAGAAT---CGA--------------------ACACTACGCCCT-AAAA--TA-TAG-TTCCA-TT-T-G-AGAAG-T-GA--------AAG-TAGAAAACATT--ATGGG---TGACCACAGG-TAACTT
gi|10 : ATTTGT-A-CG-C-AGC-AGTAGGAC---GG-GTAAC-CT-A-TC--TTTT-C--ATGCAGAACGTATTA--------------------ATACTACCCCCT-AAAA--TA-TAG-TCCCA-TT-T-A-AGAAG-T-AA--------AAG-TA-----------ATGGG---TGACCACAGG-TAAC
gi|11 : A-AATAGGACCACGT-GTCAC-TC-A-CG--TTTT-C--ATGCAGAAT---CTA--------------------ATACTACGCCAT-AAAA--TA-TAG-TTCCA-TA-T-C-AGAAG-T-GA--------AAG-GAGAA---ATG--ACTGG---TG-CCACGGG-TAGCCTat
gi|12 : ggatAAGGATAATTTGT-A-CG-C-TGACAATATGACCACGG-GTCA--CC-A-CT--TT-T-C--A--------------------------------------TACGCCCTAAAAA--TG-TAG-TTTCA-TT-T-A-CGATG-TGGA--------AAG-TA--------------GG---TGACCACAGGATAACat
gi|14 : agAAGGATAATGTGT-A-CG-C-TGA-AATAGGACCACAG-GTCAC-CCTA-CA--TTAT-C--ATGTAGAAT---TTA--------------------ACACTACGCCCT-AAAA--TA-TAA-TTCCA-TT-T-G-AGAAG-T-GA--------AAG-TAGAactt
gi|15 : agAAGGATAACTTGT-A-CG-C-TGA-AATAGGACCACGG-GTAAC-CC-A-CCAGTTAT-C--ATGCAGATT---ATA--------------------GTACTACGCCCA-AGAA--TA-TAG-TTCCA-TT-T-A-AAAAG-T-GA--------A
gi|16 : cagAAGGATAATTTTT-A-CT-C-TGA-AATAGGAGCACAG-GTCAC-CCTA-CA--TGAT----A-GCAGAAT---CTA--------------------ACACTACGCCCT-AAAA--TA-TAG-TTCCA-TT-T-GAAGAAG-T-GA--------AA--TAGtg
gi|17 : agAAGGATAATGTGT-A-CG-C-TGA-A-TATGACCACAG-GTCAC-CCTA-CA--TTAT-C--ATGCAGAAT---ATA--------------------ACACTACGCCCT--AAA--TA-TAG-TTCTA-TT-T-G-AGAAG-T-GA--------AAG-TAGA
gi|18 : gAAAGATAATTTGT-A-CG-C-TGA-AATAGAACCACAG-TTTAC-CCTA-CA--TTAT-C--ATGCAGAAT---CTA--------------------ACATTACGCTTT-AAAA--TA-TAG-TTCCA-TT-T-G-AGAAG-T-GA--------AAA-TA
gi|19 : cAATGATAATTTGT-A-CG-C-GGA-AGTAGAACCACGG-TTCAC-CC-A-CT--TTAT-C--ATGCAGAAT---CAA--------------------ATACTACTCCGT-AAAA--TA-TAG-TTCCA-TT-G-A-AGAAG-T-GA--------GAG-TA
gi|2 : gAAAGATAATTTGT-T-TG-C-AGA-AATTGT-TCGTTT-GTCAC-CC-A-AT--TTGT-C--AAGCAATAT---ATG--------------------ATACTACGCCGT-AAAA--TA-TAG-TTCAA-CT-T-A-CGACA-T-GA--------AAG-TAGAAAACATA--ATGGG---TGACCACAGG-
gi|20 : agAAGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCAT-CC-A-CA--TTTT-C--A--------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCA-TT-T-G-AGAAG-T-G---------AAG-TA---------------G---TGACCACAGG-TAACCcgctt
gi|21 : AGGATAATTTGT-A-CG-C-TGA-AATAACACCACGG-GTCAC-CT-A-TC--TTTT-C--ATGCAGAAT---CTA--------------------ATACTACGCCGT-AAAA--TA-TAG-TTCCA-TA-T-A-AGAAG-T-GA--------AAG-TAg
gi|22 : AAGGA-AATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCAC-CA-A-CA--TT-T-C--ATA-------------------------------------ACGCCCT-AACA--TG-TAGTTTCCA-TT-T-G-AGAAGTT-GA--------AAG-TAG
gi|23 : gAGGGAGAATTTGT-A-CA-C-TGA-AGTTGGAATGAGG-GTCAT-TC-A-TC--TTAT-C--ATGCAAAAT---GTAAT------------------ATACTACACCAT-AAAA--AA------------------ACAAA-T-GA--------AAG-AAGAAAAgtgaacaca
gi|24 : gGATA-TTTAT-AGCT-C-T-A-AACAGGAGCACAG--TCAC----A-CC--TCATAC--AC-CAGAAA---CTA--------------------ACACTA-GCCCT-AAAA--AAATAG-TTCCA-TT-T-G-AGAAG-T-GA--------AAG-T
gi|25 : aTAATACGT-A-CG-C-TGA-AGCAGGACCACGG-GTCAC-TC-A-CC---TAT-CTAATATATA-------A--------------------ATATCATGCCCT-AAAA--TA-AAG-TTCTA-TT-T-
gi|26 : tagaaagatacctgG-GTCAC-CC-A-CA--TCTT-C--ATGCAGAAT---CTACTTAGTAGTAGTACTACTTAGTACTACCCCGT-ACAA--TA---G-TTCCA-TT-TTA-AAAAG-T-GA--------AAG-TAGAAa
gi|27 : AAGGGTAACTTAT-A-CC-T-TGA-AATAGGGCAACAG-GTCAC-CC-AACG--TT-T-T--ATGCAAAAT---CTA--------------------ATACTATGCAGT-AAA----A-TAG-TTCCA-TT-T-A-AGAA
gi|28 : gAAGGATACTTTGT-A-CG-C-TGA-AATAGGACCACGG-ATCAC-CC-A-CC--T--------------------TA--------------------ATACTACGCCGT-AAAA--TA-TAG-TTCCA-TT-A-A-TGATT-T-GA--------AAG-TA
gi|29 : cagAAGGATAATTTGT-A-CGTC-TGA-ATTAGGACCACGG-GTCAC-CC-A-CA--TTTT-C--A--------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCA-TT-T-G-AGAAG-T-GA--------AAG-
gi|3 : AAGATAATTTGTTA-CG---TGA-AATAGA--CACAG--TCAC-CCTA-CA--TTAT-C--ATGCAGAAT---ATA--------------------ACATTAC-CCCA-AAAG--TA-TG---TCCA-TT-T-GCAGAA----GA--------AAGATA-CAAACATT--A-GCGTATTGACCACGGG-TAACC
gi|30 : cagAAGGATAATTTAC-A-TG-C-TGC-AG-AAGAGTACAG-GTCGC-CA-A-CC--T--------------------------------------------GCTACGCACT-AAAA--TA-TAG-TCCAG-TT-C-A-AAAAG-T-GA--------AAG-TAGc
gi|31 : agAAAGATAATTTGT-A-CG-C-TGA-AATAAGATCACGG-GTCAC-CC-A-CA--TTTT-C--A--------------------------------------TACGCCCT-AACA--TG-TAG-TTCCA-CT-T-G-AGAAG-T-GA--------AA
gi|32 : gAAGGATAATT-GT-A-CG-C-TGA-AATAGGACCAC-G-GTCAC-CC-A-CA--TT-T-C--A--------------------------------------TACGCCCT--AAA--TG-TAG-TTCCA--T-T-G-AGAAG-T-GA--------AAG-
gi|33 : agGGATAATTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCAC-CC-A-CA--TTTT-C--A--------------------------------------TACGCCCT-AAAA--TG-TAG-TTCCA-TT-T-G-AGAAG-T-GA--------A
gi|34 : T---CTA--------------------TTACTATGTCGT-AAAA--TA-TAG-TTCCA-TA-T-A-AAAAG-T-GA--------AAG-TAGAAAACATGAAATGGG---TGACCACAGT-TAACCT
gi|35 : AAAGATGAATTGT-A-CG-T-TGA-AACAGGACCACAG-GTCAC-CC-ATCT--TTTT-C--ATGCAGAAT---CTA--------------------ATACTACACCGT-GAAA--Ttc
gi|36 : CC-AAAACTTA-TAG-TTCCA-TA-T-A-AGAAG-T-GA--------AAG-TAGAAAACAGG--AT-AG---TG--CACGGG-TAACg
gi|37 : gcagccgacatccaAAGCATGATTTGT-A-CG-CCTGA-AATAGGACAACGGAGTCACGCT-A-CC--GTATTC--ATGCAAGAT---CTA--------------------ATACTACGCtctt
gi|38 : TAGGACCACAG-GTCAC-CCTA-CA--TTAT-C--ATGCATAAT---CTA--------------------ACGCTACGCCCT-AAAA--TA-TAG-TTCCA-TT-T-G-AGAaaat
gi|39 : AC-CT-A-CAG-TTAT-C---TGCAGAAC---CTA--------------------ACAC---ACCCT-AAAA--AC-TAA-TTC-G-TTAT-G-CAGAG-T-GA--------AAG-TAGAA
gi|4 : ttaTTGT-A-CG-G-TGT-AATAGGACCACAT-GTCAC-CC-A-CC--TTTA-C--ATGCAGAAT---CTA--------------------ATAGTACGCCGT-AAAA--TA-TAG-TTCCA-TA-T-G-AGAAG-T-GAAAGTGTTGAAG-TAGAAAACATG--TAGGG---TGA--A-AGG-TAACCT
gi|40 : AAGGATAATTTGT-A-CG-C-TGA-AGTAGGACCACGG-GTCAC-CC-A-AC--TTAT-C--ATGCAGAAT---CAA--------------------ATACTACGt
gi|41 : gG-C-TGA-AATTATACCACGG-GTCAC-CC-A-CC--TTTT-T--ATGTAAAAT---ATA--------------------ATACTACGCCGT-AAAA--
gi|42 : AAGGATGATTTGT-A-CG-C-TGA-AAGAAGACCACGG-GTCAC-CC-A-TC--T
gi|43 : agTA--------------------ATACTACGCCGT-AATA--TA-TAG-TTCCA-TT-A-A-AGAAG-T-GA--------AAG-
gi|5 : tAAGGATAATTTGT-A-CA-C-TGA-AATAGAACCACAG-GTAAC-CC-A-TC--TTA----------------------------------------ATACTACGTCGT-AAAA--TA-TAG-TTCCG-AT-A-A-AGAAG-T-GA--------AAG-TAGGAAACGTG--CTGGG---TGACCACAGG-TAATCT
gi|6 : agTGT-A-CG-C-TGA-AACAGAAACACGG-GTCAC-CC-A-CA--TCTT-C--ATGCAGAAT---CTA--------------------CTACTACCCCGT-TAA----A-TAG-TTCCATTT-T-A-AGAAG-T-GA--------AAG-TAGAAAACATG--AGAGA---TGACCACAGG-TAACCTt
gi|7 : GGATAGTTTGT-A-CG-C-TGA-AATAGGACCACGG-GTCAC-CC-A-CC--TTA----------------------------------------ATACTGCGCCGT-ATAA--TA-TAG-TTCCA-TT-T-A-TGAAG-T-GA--------AAG-TAGGAAACATA--CTGGG---TGATCACCAG-TA
gi|8 : cagatGGATAATACGT-A-CT-C-TGA-AGTAGGACCACGG-ATCAC-CC-A-CC--TTAT------GCAGA-------------------------------CTACGTCCT-AAAA--CA-TAG-TTTCA-TT-T-C-AAAAG-T-GA--------AAG-TAG-AAACATG--AT--G---TGACCACCGG-TAACCTctc
gi|9 : gacAAGAATAATTTG--A-CG-C-TGA-AGTAGGACCACGG-GTCAT-CC-C-CC--TTAT-C--ATGCAAAAT-------------------------------A-----T-AAAG--TA-TAG-TTCCA-TT-T-A-AGAAG-T-GA--------AAG-TAG-AAACATG--ATGGG---TGACAACAGG-CAACCTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAGCAATTACCGGGTATGAAGAATGACATCTGCTCACCTTTCTCATCTAGCAAAATAGTTAATCAGATTTTATTTAAAATGAAGGGCAAAATATGCATGGACAGCATGCA