lowQualScore : 1111111111 33333333333333333333333333333333333333333333333333333333333333333 11111111111111
lowQualScore : 22 333333333 11 11 33333 111 33333 1 1 1 1 1 111 1 1 11 1 1 1 1 11 1 1 4444 11 333 2222 1 11 1 111111 11 1 1 2222 22222 11 111 11 1 3333333 111 1 1 1 11 1 1 111 1 1 2 111 1 333333333333 1 1 1 11 1111 11 444 1 1 22 1111 2 1 2222222222 1 1 5555555 11 00000000000000000000000000000000000000000000000000000000000000000 4 1 55555555555555 2 1 2222 1 11 1 1 22222 33 1 111 3 1 222 22
lowQualScore : 11 6 77 0 6 111111111 5 6 77 4 55 6 22222 6 111 2 2 3 55555 2 1 3 3 6 2 0 4 2 5 3 3 3 666 6 8 3 7 6 99 3 3 3 3 55 3 5 6666 88 7 888 1 5555 8 3 3 33 0 999999 99 6 0 0 4444 55555 3 4 22 33 111 3 22 0 2222222 6 333 0 5 7 22 3 6 6 7 7 3 6 333 6 5 7 7 6 7 0 0 99 77 777 0 777777777777 0 5 0 2 22 3333 33 555 6 7 0 3 00 6 5555 1 0 9999999999 0 0 7777777 33 7 2 7 6 11111111111111111111111111111111111111111111111111111111111111111 0 0 3 33333333333333 99 6 2 0 0 3 1111 3 7 33 0 0 33333 33 0 777 0 0 111 33
lowQualScore : .. . .. . . ......... . . .. . .. . ..... . ... . . . ..... . . . . . . . . . . . . . ... . . . . . .. . . . . .. . . .... .. . ... . .... . . . .. . ...... .. . . . .... ..... . . .. .. ... . .. . ....... . ... . . . .. . . . . . . . ... . . . . . . . . .. .. ... . ............ . . . . .. .... .. ... . . . . .. . .... . . .......... . . ....... .. . . . . ................................................................. . . . .............. .. . . . . . .... . . .. . . ..... .. . ... . . ... ..
lowQualScore : 55 7 99 1 0 666666666 7 7 55 0 88 7 88888 7 777 5 5 2 22222 5 2 2 0 5 5 0 2 5 0 3 3 3 333 7 3 3 0 0 33 3 3 3 3 00 3 0 7777 33 3 333 0 0000 3 3 2 88 0 555555 00 0 0 0 0000 00000 0 0 22 55 000 0 55 0 5555555 0 555 0 5 0 00 3 0 7 3 3 3 7 000 0 0 3 3 0 3 5 0 22 88 555 0 555555555555 0 5 0 2 00 8888 88 222 0 0 0 2 55 5 0000 5 0 5555555555 0 0 2222222 88 8 2 0 0 55555555555555555555555555555555555555555555555555555555555555555 0 7 3 88888888888888 88 0 5 0 0 2 2222 2 0 88 0 8 88888 88 0 555 0 0 000 00
consensus : NNTTTAAGGTAGGTCCATACTCTT-AGAAAT-TT--CTGTCAATCAATT---T----TTTTTTTCA-TTTAAATGACCT-AAA-CAACTCATNAAC--TAACT-AAAA-A-AACATA-TG---AGACATACCTTTGCAGACTAATTTTTATACTATGTGCNACAGAGCACATGT-ACTCCCAAATGCAAAAGCCATATTTT-AA-CACAAGG-ACACA-TGATCTCTTTTTTTCTCA-TTTATG-CACCA-AAGCA-CATCA-TATTCAGCT-ATAA-TTATA-AAAACCAATAGATATT-AT-TTACT--GAGAGAATTTTCAAATATA---TTCAATTG-AAAACATACAAATTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATCAC-AAAATATC-GCA-ATTTT-A-AAAAT-----TNTCNAANTCTAAATTG-T-TTACNTAC-CA-GT-------TTTTCTT-GAAAA-ATGTTTAGAATTATATCTANNNNNNNNNNNNAAATATAT-TTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-GCAAATACAATCCTAA-AATCAAG-AT-------CAA-CGAAAT-ATAGCT-ACAT-ATTCA-TATATAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAATA-TAGAACACA--AGGGGG-GGG-GG----------CTTCGTTTTTCTCACATTTT-GTT-ATTTTAT---AA--AANTGCATGCATGTTATCT------------------GATG--NTT--AAAAAAAAAAAATGTACCG--TAAACATACATGTAGATTCTAGGAA-CTACGGCTTATGTACAAAT-AATTTTGTTTAACAGGAGTTC---AAANACTCAACAACTTT-TGTTG----ATGATTTTCTCTGACTTG--GT-AACTCT----GGGTTTCT-TTTGAA-CCAG---ACACAAACT-CAC-TAAAAACAGTCTGA
Reference ( gi|1 ) : TTTTTAAGGTAGGTCCATACTCTA-AGAAAT-TT--CTGTCAATTAATC---T----TTTTTTTCA-TTTAAATGACTT-AAT-CAACTCATTAAC--TAACT-AAAA-A-CCCATA-TG---AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACCCCCAAATTCAAAAGCCATATTTT-AA-CACAAGG-ACACA-TGATCTCATATTTTATCAATTTATA-CACCA-AAGCA-CATCA-TATTCAGCT-ATAATTTATA-AAAACCAATATATATTCACATTACT--GAGAGAATTTTCAAATATATTTTTTAACTG-AAAACATACAAAATTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATCAA-AAAATGTC-GCA-ATTTT-A-AAAAT-----TATCAAGATCTAAATTG-T-TTACATAC-CA-GT-------TTCTCTT-GAAAA-ATATTTAGAATTATTTCTAAGGTTAACAACAAAACGTAT-TTTATCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGTAATTTCAAGTTTTACAATTATTCTTTGTACACTTTCAAAATAGTAAAATGTAACA-GCAAATGCAATTTTAG-AATCAAG-AT-------TAA-CAAAAT-ATATCT-ATAC-ATATA-TATGTAAAACATATACTAAAAAATTT-GTCCAACCAGACAAATT-TAGAACACA--AGGGGGTGGG-GGTGGGGGCCCACTTCGTTTTTCTCACATTTT-GTT-ATT---T---AA--AATTACATGCATGTTATTT------------------CATG--CTC--AAAA-----------ACCA--TAA------------ATTCTAGGAACCTACGGCTTATGTACAAAT-AATTTTGTTT--------------AAACACTTAACAAC-TT-TGTTG----ATGATTTTCTCTGACATG--GT-AATTCT----GGGTTTC--TTTGAA-CCAG---ACA-AAACT-CAC-T-AAAACAAACTGACTT
gi|6 : TTTAAGGTAGGTCCATACTCTT-GGGAATATT--CTGTCAACCAATC---TC---TTTTTTTCA-TTTAAATGACCT-AAAACAACTCATTAAC--TAACT-AAAACA-AACATA-TG---AGACATACCTTTGCAGACTAATTATTA--CTATGTGCTACAGAACACATGT-ACTCCCAAATGCAAAAGCCATATTTTTAA-CACAAGG-ACACA-TGATCTCTTTTTTTCTCAATTTATG-CACCA-AAGCA-CATCA-TATTCAGCT-ATAATTTATA-AAAACCAATAGATATT--CATTACT--GAGAGAATTTTCAAATATA---TTCAATTG-AAAACATACAAATTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AG--AAAAAATCAC-AAAATATC-GCA-ATTTTGA-AAAAT-----TCTGTAAATTTCAATTG-T-TTACCTA--CA-GT-------TTTTCT---AAAA-ATG-TTAGAATAATATCT
gi|11 : TTTAAGGTAGGTCAATACTATT-AGAAAT-TT--CTGTCAGTCAATT---T----CTTTTTTCA-TTTCAATAACTT-TCA-CAACTCACAAACTATAACT-AAAA-ATCCCATA-TATATAGACAT
gi|9 : TTAAGGTACTTCCATACTCTT-AGAAAT-TT--CTGTCAATCAATT---CAATCTTTTTTTCA-TTTAAATGACCT-AAC-CAACTCATTAAC--TAACTAAAAA-A-ACCATACTG---AGACATGCCTTT-TAAACTAATTTATTTA--GTG-GCTACAGAGCACATGT-ACCCCAAACTGCAAtgtactacaggacacatat
gi|14 : TTAAGGTAGGTCCATACTCAG-AGAAAT-TT--ATGCCAATCAATCTTTT----TTTTTTTCA-TT
gi|4 : TAAGGTAGGTCCATACTCTCTGGAAAT-TTTGCTG-CAACCAATG---C----TCTTTTTCAATTTAAATGACCT-AAA-CAACTCATTAACC-TAACT-AAAACA-AACATA-TG---AGACATAC-TTTGCAGACTAATTTT-A-ACTATGTGCGACAAA-CACATGTTACTCCCAAATGCAAAAGCCATATTTT-AAACACAAGGGACA-A-T-ATCTCTTTTTTTCTCA-TTTATGGCACCATAAGCAACATCAATATTCAGCTTATA--TTATAGAAAACCAATAGATATT-AT-TTACTCTGAGAGAATTTTCAAATATA-GATTCAATTGAAAAACATACAAATTTGCTGATTTAATCTGGCCTCACA-TGCTTC--AG--AAAAAATCGACAAAATATC-GCA-AATTT-G-AACATTCCTGTAACAATTTC-ACATTGCT-TTACCTAC-CA-GT-------TTTCCTT-GAAAA-ATG-TTAGAAT
gi|8 : TAAGGAAGGTCAATACTATT-AGAAAT-TT--CTGTCAATCAGCT---TC---TTTTTTTCA-TTTAAATAATTT-AAA-CAACTCATAAAC--TAACT-AAAA-A------------------TACCTTTGCAGACTA-------TACTTTGTGCGACAGAGCACAT---------AAATGCAAAAGCCAAATTTT-AA-CACAAAG-ATATAATGATCTCATGCTTTACTATTTTATG-CAACA-AAGCA-CATCA-AATTATGCA-ATGAAATATA-TAAACTAATAGAAATTCAT-TTACT--GAGTG-------------ATTTTGTAA--A-GAAATATAGATAATTGCTG-TTT-TTCTG--CTCACA-TCCTTC--ACAAAATAAATCAC-AAAATATC-GCA-ATTTT-AGAAAAT-----TATCTAATTATAAAGTG-T-TTATATGC-CA-GT-------TTTTCTTCAAAAA-ATATTTAGAATTATATCTAagagt
gi|12 : --CTATCAATCAACT---T----CTTTATTAA-TTTAAATAACTTTAAT--AATTCACAAAC--TAACT-AAAA-T-CACATA-TG---AGACATAC
gi|10 : TAATCTG--CTCACAATCCTTCCAAGAAAAAAAAGCAC-AAAATATCAGCATATGT----GAAAT-----TCTCAAAATCTAATTTA-TGTCACATACATATGTACCTATGTTTTCTT-GAAAAAATATTTAGAATTAT
gi|15 : AAATATAT-TTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGatat
gi|2 : AATATAT-TTTACCATAGTTGGCCAGAGATATTT-GCA-AAATGTTCTCTTGAATACGTATACCCCCA-TTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-GCAAATACAATCTTAA-AATCAAG-AT-------CAA-TGAAAT-ATAGCT-ACAT-ATTCA-TATATAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAATA-TAGAA-ACA--AAGGGGGGGG-GG----------CTTCGTTTTTTCCACATTTT-GTT-ATTTTAT---AA--AAATGCATGCATGTTATCT------------------GATA--ATT--AAAAAAAAAAAATGTACTG--TAAACATACATGTAGATTCTAGGAA-CTACAGCTTATGTACAAAT-AATTTTGTTTAACAGGAGTTC---AAAAACTCAACAACTTT-TGTTG----ATGATTTTCTCTGACTTG--GT-AACTCT----GGGTTTCT-TTTGAA-CCAG---ACACAAACT-CAC-TAAAAACAGTCTGA
gi|3 : TATCTTTACCATATTTG-CCAGAGATA-TTTGCACAAATGCTCTGCTGAATACGTATA-CCCCAATTTTGGCAATTGCAAG---TACAATTAT--TTTGCACACTTTC-AAATAGTAAAATGTTACAGGCAAATACAA--CTAGAAATCAAG-AT-------CAT-GAAATT-ATAGCT-ACAT-ATTCA-TA---AAAAC--ATACTGAAAATTGT-GTCC-ACCAGACAAATA-TAGAACACA--GGGGGG-GGG-GG----------CTTCGTTTTTCTCACATTTTGGTTAATT---TATAAA--AACTGCATGCATG-TATCTGATAAATTAAAAAAGAAACATGTACTG--TAAACAT--------AGCATGTAG------------ATTCTAGGAA-CTAAGCCTTATGTACAAATAAATTTTGTTTAACAGGAGTTCAAAAAAC-CTCAACAAC-TTGTG-TG----ATGATTTTCTCTGACTTG--GT-AA-TCT-----GGTTTT--TTTGAACCCAGGACACA-AAACT-CAC-T-AAAACAGTCTGAat
gi|5 : aaaTGTTCTCTTGAATACGTATACCCC--ATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-GCAAATACAATCTTAA-AATCAAG-AT-------CAA-TGAAAT-ATAGCT-ACAT-ATTCA-TATATAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAATA-TAGAACACA--AGGGGG-GGG-GG----------CTTCGTTTTTCTCACATTTT-GTT-ATTTA-T---AA--AAATGCATGCATGTTATCT------------------GATA--ATT--AAAAAAAAAAAATGTACTG--TAAACATACATGTAGATTCTAGGAA-CTACAGCTTATGTACAAAT-AATTTTGTTTAACAGGAGTTC---AAAAACTCAACAACTTT-TGTTG----ATGATTTTCTCTGACTTG--GT-AACTCT----GGGTTTCT-TTTGAA-CCAG---ACACAAACT-CAC-TAAAAACAGTCTGAat
gi|7 : AAATGTAACACGCAAA-ACAATTCT-T-AATCTAGCATAAGTGAATAATCAAAATTATAACTCATACTGTATAGCATTTAAAA--TATACTGAAAATTTTTGTCCAACCAATCAAAATATATGATACATCA-----TGGGTGGTAGGGGC--ACTTCGTTTTTCTCACATTTT-GTT-ATTTTAT---AAACAATTACATGCATGCTATCT------------------AGCG--CTTTAAAAA-----------ACCat
gi|7 : --------------AAATACTCAA-AAC-TT-TGTTGTATTATG-TATTCTCTGACTTGCGGTTAATTCTCTGTGTGTTTCCTTTTGAA-CCAG---ACACAAAGTCCACTT-AAAACAccatataacaagttagtgtaaaacatctatattgtagattgtggggtaactacagtcttgtatgttatcaacattaattttagtcttaagcaggagttcaaaatactcaaaactttgttgtattatgtattctctgacttgcggttaattctctgtgtgtttccttttgaaccagacacaaagtccacttaaaacagtttga
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AAGGTTAACAAAAAAAAACCCCATATAATATTTCATACCAGTATTGCAAAACAGGGTCACTATAAATAC
Unaligned ( gi|16 ): AGTAATTATATGCGGATTAAAATATTTTCCAGT
Alignments
lowQualScore : 2222 11 22222222 11111 2 1 11 1 2 1 1 1 1 111 2 1 2222 11 222222222 1 1 11 11 11 1111 11111 2222222 1 111111111111 1 1 111 222222 222222 11 22222 11 11 3333333333333 11 22222222 11111111 11 11 111 11 1 1111 11 111 111 11 1
lowQualScore : 5 5 66 888 0000 5 5 1 33 88888888 5 5 0 99999 0 1 3 8 8 8 0 0 66 2 0 1 0 0 0 0 0 3 111 0 0 8888 33 3 222222222 0 0 4 0 0 11 8 11 11 8 8 8 5555 1 88888 1 1 8 8 1 8 8 6666666 88 8 0 222222222222 3 2 5 0 555 3 2 3 1 8 8 0 22 8 0 333333 333333 00 8 0 3 0 00000 11 8 0 8 8 8 8 8 8 11 6666666666666 8 6 0 8 11 1 3 888 0 99999999 11 0 2 8 0 22222222 11 8 8 11 8 444 8 8 8 0 8 8 1 11 0 0 7777 0 8 11 444 444 5 0 11 8 8 5
lowQualScore : . . .. ... .... . . . .. ........ . . . ..... . . . . . . . . .. . . . . . . . . . ... . . .... .. . ......... . . . . . .. . .. .. . . . .... . ..... . . . . . . . ....... .. . . ............ . . . . ... . . . . . . . .. . . ...... ...... .. . . . . ..... .. . . . . . . . . .. ............. . . . . .. . . ... . ........ .. . . . . ........ .. . . .. . ... . . . . . . . .. . . .... . . .. ... ... . . .. . . .
lowQualScore : 7 7 99 888 6666 0 7 0 66 00000000 7 7 8 22222 8 0 2 0 6 0 0 0 55 5 0 2 0 0 0 0 0 2 000 0 0 2222 88 2 555555555 8 0 0 0 8 00 0 00 22 0 0 0 6666 0 00000 0 4 0 0 0 0 0 0000000 88 0 6 000000000000 2 5 5 0 222 2 5 2 4 0 0 8 22 0 8 000000 000000 44 0 8 2 8 00000 00 0 8 0 0 0 0 0 0 00 0000000000000 0 0 8 0 00 0 8 666 8 00000000 22 6 8 0 8 66666666 00 0 0 00 0 000 0 0 0 8 0 0 0 00 6 8 0000 8 0 00 222 000 0 8 00 0 0 8
consensus : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAA-A---NA-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACAC-ATGATCTC-TTTTTTTCTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGCTAT-A-ATTTATA-AAAACCAATAGATATTCAT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAANTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCA-ATTTT-A-AAAATTCTC----NAAATCTAAATTG-T-TTACATAC-CA-GT-------TTTTCTT-GAAAAA-TATTTAGAATTATATCTAAGGTTAACAACAAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAATCTTA-AAATC------AAG------ATCAACGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCTGAT-AATTAAAAAAA--------AAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTC-AAAAA--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
Reference ( family-1117 ) : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAA-A---AA-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCNACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACAC-ATGATCTC-TTTTTTTCTCA-TTTAT-GCACCA-AAGC-ACATC-ATATTCAGCTAT-A-ATT-ATA-AAAACCAATAGATATT-AT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAATTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCA-ATTTT-A-AAAATTNTC----NAANTCTAAATTG-T-TTACNTAC-CA-GT-------TTTTCTT-GAAAAA-TGTTTAGAATTATATCTANNNNNNNNNNNNAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAATCCTA-AAATC------AAG------ATCAACGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCTGAT-GNTTAAAAAAA--------AAAAATGTACCGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTC-AAANA--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
gi|1 : TTTAAGGTAGGTCCATACTCT-AAGAAAT-TT--CTGTCAATTAA---TCT----TTTTTTTCA-TTTAAATGACTTAAT-CAACTCATTAAC--TAACTAAAA-A---CC-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACCCCCAAA-TTCAAAAGCCATATTTT-AACACAA-GGACAC-ATGATCTC-ATATTTTATCAATTTAT-ACACCA-AAGC-ACATC-ATATTCAGCTAT-A-ATTTATA-AAAACCAATATATATTCACATTA--CTGAGAGAATTTTCAAATAT--ATTTTTTAACTG-AAAACATACAAAATTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-AAAAAATGTC-GCA-ATTTT-A-AAAATTATC----AAGATCTAAATTG-T-TTACATAC-CA-GT-------TTCTCTT-GAAAAA-TATTTAGAATTATTTCTAAGGTTAACAACAAAACGTATTTTATCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGTAATTTCAAGTTTTACAATTATTCTTTGTACACTTTCAAAATAGTAAAATGTAACA-G-CAAATGCAATTTTA-GAATC------AAG------ATTAACAAAAT-ATATCTATACATATATATG-----TAAAACATATACTAAAAAATTT-GTCCAACCAGACAAA-TTTA-GA-ACA-C-AAGGGGGTG--GGGGTGGGGGCCCAC--TTCGTTTTTCTCACATTTT-GTTATT---T-AA--AATTACATGCATGTTATTTCAT-GCTCAAAA-------------------ACCAT-AA----------------ATTCTAGG--AACCTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TT-------------AAACA--CTTAACAAC-TTTGTTG----ATGATTTTCTCTGACATG-G--TAA--TTCTG---GGTTTC-TTTGAACC--AGACA--AAACT-CACT-AAAACAAACTGA
gi|10 : ttTAATCTG--CTCACAATCCTTCCAAGAAAAAAAAGC-ACAAAATATCAGCATATGT----GAAATTCTC----AAAATCTAATTTA-TGTCACATACATATGTACCTATGTTTTCTT-GAAAAAATATTTAGAATTATATctt
gi|11 : TTTAAGGTAGGTCAATACTAT-TAGAAAT-TT--CTGTCAGTCAA---TTT----CTTTTTTCA-TTTCAATAACTTTCA-CAACTCACAAACTATAACTAAAA-ATCCCA-TATA-TATAGACATat
gi|12 : --CTATCAATCAA---CTT----CTTTATTAA-TTTAAATAACTTTAA-TAATTCACAAAC--TAACTAAAA-T---CA-CATA-TG-AGACATACtgtactacaggacacatat
gi|14 : TTAAGGTAGGTCCATACTCA-GAGAAAT-TT--ATGCCAATCAATCTTTT----TTTTTTTCA-TT
gi|15 : AAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATG
gi|2 : AATATATTTTACCATAGTTGGCCAGAGATATTT-GCA-AAATGTTCTCTTGAATACGTATACCCCCA-TTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAATCTTA-AAATC------AAG------ATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-A-A-CAAAGGGGG-G--GGGG----------C--TTCGTTTTTTCCACATTTT-GTTATTTTAT-AA--AAATGCATGCATGTTATCTGAT-AATTAAAAAAA--------AAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACAG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTC-AAAAA--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
gi|3 : AAATAT-CTTTACCATATTTG-CCAGAGATATTT-GCACAAATGCTCTGCTGAATACGTATACCCC-AATTTTGGCAATTGCAAGT---ACAATTATT--TTGCACACTTTCAAA-TAGTAAAATGTTACA-GGCAAATACAA--CTAGAAATC------AAG------ATCA-TGAAATTATAGCTACATATTCATA--------AAAAC--ATACTGAAAATTGT-GTCCA-CCAGACAAA-TATA-GA-ACA-C-AGGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTTGGTTAATTTATAAA--AACTGCATGCATG-TATCTGATAAATTAAAAAAG--------AAACATGTACTGT-AAACA--TAGCA-TGTAGATTCTAGG--AA-CTAAGC-CT--TATG-TACAAA---TAAATTTT-GT-TTAA-CAGGAGTTC-AAAAAACCTCAACAACTTGTG-TG----ATGATTTTCTCTGACTTG-G--TAA---TCTG---G--TTTTTTTGAACCCAGGACACAAAACT-CACT-AAAACAGTCTGAat
gi|4 : TAAGGTAGGTCCATACTCTCTGGAAAT-TTTGCTG-CAACCAA---TGC----TCTTTTTCAATTTAAATGACCTAAA-CAACTCATTAACC-TAACTAAAACA---AA-CATA-TG-AGACATAC-TTTGCAGACTAATTTT-A-ACTATGTGCGACAAA-CACATGTTACTCCCAAA-TGCAAAAGCCATATTTTAAACACAAGGGACA--AT-ATCTC-TTTTTTTCTCA-TTTATGGCACCATAAGCAACATCAATATTCAGCT-T-ATATT-ATAGAAAACCAATAGATATT-AT-TTACTCTGAGAGAATTTTCAAATATAGATTC---AATTGAAAAACATACAAATTTGCTGATTTAATCTGGCCTCACA-TGCTTC--AG--AAAAAATCGACAAAATATC-GCA-AATTT-G-AACATTCCTGTAACAATTTCACATTGCT-TTACCTAC-CA-GT-------TTTCCTT-GAAAAA-TG-TTAGAATat
gi|5 : TGTTCTCTTGAATACGTATACCCC--ATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAATCTTA-AAATC------AAG------ATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTA-TTTAT-AA--AAATGCATGCATGTTATCTGAT-AATTAAAAAAA--------AAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACAG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTC-AAAAA--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGAagagt
gi|6 : TTTAAGGTAGGTCCATACTCT-TGGGAATATT--CTGTCAACCAA---TCTC---TTTTTTTCA-TTTAAATGACCTAAAACAACTCATTAAC--TAACTAAAACA---AA-CATA-TG-AGACATACCTTTGCAGACTAATTATTA--CTATGTGCTACAGAACACATGT-ACTCCCAAA-TGCAAAAGCCATATTTTTAACACAA-GGACAC-ATGATCTC-TTTTTTTCTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGCTAT-A-ATTTATA-AAAACCAATAGATATT-CA-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAATTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AG--AAAAAATC-ACAAAATATC-GCA-ATTTTGA-AAAATTCTG----TAAATTTCAATTG-T-TTACCTA--CA-GT-------TTTTCT---AAAAA-TG-TTAGAATAATATCTat
gi|7 : AAATGTAACACG-CAAA-ACAATTCTT-AA-TCTAGCATAAGTGAATAATCAA--AATT-ATAACT-CATACT-GTATAGCATTTAAAAT--ATACTGAAAATTTTTGTCCAACCAATCAAAATATATGATACATC-ATGGGTG-GTAGGGG----------CACTTCGTTTTTCTCACATTTT-GTTATTTTAT-AAACAATTACATGCATGCTATCTAGC-GCTTTAAAAAACCCCATATAACAAGTTAGTGTAAAACATCTA-TATTGTAGATTGTGGGGTAA-CTACAGTCTTGTATGTTATCAACATT-AATTTTAGTCTTAAGCAGGAGTTCAAAATA--CTCAA-AAC-TTTGTTGTATTATG-TATTCTCTGACTTGCGGTTAATTCTCTGTGTGTTTCCTTTTGAACC--AGACAC-AAAGTCCACTTAAAACAGTTTGA
gi|8 : TAAGGAAGGTCAATACTAT-TAGAAAT-TT--CTGTCAATCAG---CTTC---TTTTTTTCA-TTTAAATAATTTAAA-CAACTCATAAAC--TAACTAAAA-A-------------------TACCTTTGCAGACTA-------TACTTTGTGCGACAGAGCACAT---------AAA-TGCAAAAGCCAAATTTT-AACACAA-AGATATAATGATCTCATGCTTTACTAT-TTTAT-GCAACA-AAGC-ACATC-AAATTATGCAATGA-AAT-ATA-TAAACTAATAGAAATTCAT-TTA--CTGAGTGATTTTGTAAA------------------GAAATATAGATAATTGCTG-TTT-TTCTG--CTCACA-TCCTTC--ACAAAATAAATC-ACAAAATATC-GCA-ATTTT-AGAAAATTATC----TAATTATAAAGTG-T-TTATATGC-CA-GT-------TTTTCTTCAAAAAA-TATTTAGAATTATATCTA
gi|9 : TTAAGGTACTTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTCAATCTTTTTTTCA-TTTAAATGACCTAAC-CAACTCATTAAC--TAACTAAAA-A---AACCATACTG-AGACATGCCTTT-TAAACTAATTTATTTA--GTG-GCTACAGAGCACATGT-AC-CCCAAACTGCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAGGTTAACAAAAAAAAACCCCATATAATATTTCATACCAGTATTGCAAAACAGGGTCACTATAAATAC
Unaligned ( gi|16 ): AGTAATTATATGCGGATTAAAATATTTTCCAGT
Alignments
lowQualScore : 2222 11 22222222 11111 2 1 1 1 1 1 1 1 1 11 11 222222222 1 1 11 11 11 1111 11 2222222 1 1 1 111 333333333 11 22222 11 11 3333333333333 11 111 111 22222222 11111111 11 11 111 11 1 1111 11 111 111 11 1
lowQualScore : 5 5 66 888 0000 5 5 1 33 66666666 5 5 0 99999 0 0 3 8 8 8 0 0 6 0 2 4 3 2 3 0 0 0 0 0 66 0 2 77 33 3 222222222 0 0 1 0 0 11 8 11 11 8 8 8 5555 8 1 11 1 8 8 8 0 8 8 6666666 88 8 0 3 2 5 0 555 3 2 3 1 8 8 0 88 222222222 8 00 8 0 3 0 00000 11 8 0 8 8 8 8 8 8 11 6666666666666 8 66 8 11 1 3 444 222 0 99999999 0 0 5 8 0 22222222 11 8 8 11 8 444 8 8 8 0 8 8 11 0 0 7777 0 8 11 444 444 5 0 11 8 8 5
lowQualScore : . . .. ... .... . . . .. ........ . . . ..... . . . . . . . . . . . . . . . . . . . . .. . . .. .. . ......... . . . . . .. . .. .. . . . .... . . .. . . . . . . . ....... .. . . . . . . ... . . . . . . . .. ......... . .. . . . . ..... .. . . . . . . . . .. ............. . .. . .. . . ... ... . ........ . . . . . ........ .. . . .. . ... . . . . . . .. . . .... . . .. ... ... . . .. . . .
lowQualScore : 7 7 99 888 6666 0 7 0 66 33333333 7 7 8 22222 8 6 2 0 6 0 0 0 5 0 5 0 5 5 2 0 0 0 0 0 88 0 5 00 88 2 555555555 8 0 0 0 8 00 0 00 22 0 0 0 6666 0 0 00 4 0 0 0 6 0 0 0000000 88 0 6 2 5 5 0 222 2 5 2 4 0 0 8 88 000000000 0 44 0 8 2 8 00000 00 0 8 0 0 0 0 0 0 00 0000000000000 0 44 0 00 0 8 000 444 8 00000000 6 6 0 0 8 66666666 00 0 0 00 0 000 0 0 0 8 0 0 00 6 8 0000 8 0 00 222 000 0 8 00 0 0 8
consensus : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAA-A---NA-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCNTNTTTTNTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCAT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAANTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCA-ATTTT-A-AAAATT-CTCTA--AATCT-AAATTG-T-TTACATAC-CA-GT-------TTTTCTT-GAAAA-ATATTTAGAATTATATCTAAGGTTAACAACAAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAACGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
Reference ( family-1117 ) : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAA-A---NA-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCTTTTTTTCTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCAT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAANTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCA-ATTTT-A-AAAATT-CTCNA--AATCT-AAATTG-T-TTACATAC-CA-GT-------TTTTCTT-GAAAA-ATATTTAGAATTATATCTAAGGTTAACAACAAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAACGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
gi|1 : TTTAAGGTAGGTCCATACTCT-AAGAAAT-TT--CTGTCAATTAA---TCT----TTTTTTTCA-TTTAAATGACTTAAT-CAACTCATTAAC--TAACTAAAA-A---CC-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACCCCCAAA-TTCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCATATTTTATCAATTTAT-ACACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATATATATTCACATTA--CTGAGAGAATTTTCAAATAT--ATTTTTTAACTG-AAAACATACAAAATTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-AAAAAATGTC-GCA-ATTTT-A-AAAATT-ATCAA--GATCT-AAATTG-T-TTACATAC-CA-GT-------TTCTCTT-GAAAA-ATATTTAGAATTATTTCTAAGGTTAACAACAAAACGTATTTTATCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGTAATTTCAAGTTTTACAATTATTCTTTGTACACTTTCAAAATAGTAAAATGTAACA-G-CAAATGCAAT-TTTAG---------AATCAA-GATTAACAAAAT-ATATCTATACATATATATG-----TAAAACATATACTAAAAAATTT-GTCCAACCAGACAAA-TTTA-GA-ACA-C-AAGGGGGTG--GGGGTGGGGGCCCAC--TTCGTTTTTCTCACATTTT-GTTATT---T-AA--AATTACATGCATGTTATTT---CAT-GCTCAAAA-------------------ACCAT-AA----------------ATTCTAGG--AACCTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TT------------AAAC-A--CTTAACAAC-TTTGTTG----ATGATTTTCTCTGACATG-G--TAA--TTCTG---GGTTTC-TTTGAACC--AGACA--AAACT-CACT-AAAACAAACTGA
gi|10 : ttTAATCTG--CTCACAATCCTTCCAAGAAAAAAAAGC-ACAAAATATCAGCATATGT----GAAATT-CTCAA--AATCT-AATTTA-TGTCACATACATATGTACCTATGTTTTCTT-GAAAAAATATTTAGAATTATATctt
gi|11 : TTTAAGGTAGGTCAATACTAT-TAGAAAT-TT--CTGTCAGTCAA---TTT----CTTTTTTCA-TTTCAATAACTTTCA-CAACTCACAAACTATAACTAAAA-ATCCCA-TATA-TATAGACATat
gi|12 : --CTATCAATCAA---CTT----CTTTATTAA-TTTAAATAACTTTAA-TAATTCACAAAC--TAACTAAAA-T---CA-CATA-TG-AGACATACtgtactacaggacacatat
gi|14 : TTAAGGTAGGTCCATACTCA-GAGAAAT-TT--ATGCCAATCAATCTTTT----TTTTTTTCA-TT
gi|15 : AAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATG
gi|2 : AATATATTTTACCATAGTTGGCCAGAGATATTT-GCA-AAATGTTCTCTTGAATACGTATACCCCCA-TTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-A-A-CAAAGGGGG-G--GGGG----------C--TTCGTTTTTTCCACATTTT-GTTATTTTAT-AA--AAATGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACAG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
gi|3 : AAATAT-CTTTACCATATTTG-CCAGAGATATTT-GCACAAATGCTCTGCTGAATACGTATACCCC-AATTTTGGCAATTGCAAGT---ACAATTATT--TTGCACACTTTCAAA-TAGTAAAATGTTACA-GGCAAATACAA--CTAGA---------AATCAA-GATCA-TGAAATTATAGCTACATATTCATA--------AAAAC--ATACTGAAAATTGT-GTCCA-CCAGACAAA-TATA-GA-ACA-C-AGGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTTGGTTAATTTATAAA--AACTGCATGCATG-TATCT---GATAAATTAAAAAA--------GAAACATGTACTGT-AAACA--TAGCA-TGTAGATTCTAGG--AA-CTAAGC-CT--TATG-TACAAA---TAAATTTT-GT-TTAA-CAGGAGTTCAAAA-AACCTCAACAACTTGTG-TG----ATGATTTTCTCTGACTTG-G--TAA---TCTG---G--TTTTTTTGAACCCAGGACACAAAACT-CACT-AAAACAGTCTGAat
gi|4 : TAAGGTAGGTCCATACTCTCTGGAAAT-TTTGCTG-CAACCAA---TGC----TCTTTTTCAATTTAAATGACCTAAA-CAACTCATTAACC-TAACTAAAACA---AA-CATA-TG-AGACATAC-TTTGCAGACTAATTTT-A-ACTATGTGCGACAAA-CACATGTTACTCCCAAA-TGCAAAAGCCATATTTTAAACACAAGGGACA-A-T-ATCTCTTTTTTTCTC-ATTTATGGCACCATAAGCAACATCAATATTCAGCTTATA--TTATAGAAAACCAATAGATATT-AT-TTACTCTGAGAGAATTTTCAAATATAGATTC---AATTGAAAAACATACAAATTTGCTGATTTAATCTGGCCTCACA-TGCTTC--AG--AAAAAATCGACAAAATATC-GCA-AATTT-G-AACATTCCTGTAACAATTTCACATTGCT-TTACCTAC-CA-GT-------TTTCCTT-GAAAA-ATG-TTAGAATat
gi|5 : TGTTCTCTTGAATACGTATACCCC--ATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTT-AT-AA--AAATGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACAG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGAagagt
gi|6 : TTTAAGGTAGGTCCATACTCT-TGGGAATATT--CTGTCAACCAA---TCTC---TTTTTTTCA-TTTAAATGACCTAAAACAACTCATTAAC--TAACTAAAACA---AA-CATA-TG-AGACATACCTTTGCAGACTAATTATTA--CTATGTGCTACAGAACACATGT-ACTCCCAAA-TGCAAAAGCCATATTTTTAACACAA-GGACACA-TGATCTCTTTTTTTCTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCA--TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAATTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AG--AAAAAATC-ACAAAATATC-GCA-ATTTTGA-AAAATT-CTGTA--AATTT-CAATTG-T-TTACCTA--CA-GT-------TTTTCT---AAAA-ATG-TTAGAATAATATCTat
gi|7 : AAATGTAACACG-CAAA-ACAATTCTTAATCTAGCATAAGTGAATAATCAA--AATT-ATAACT-CATACT-GTATAGCATTTAAAAT--ATACTGAAAATTTTTGTCCAACCAATCAAAATATATGATACATC-ATGGGTG-GTAGGGG----------CACTTCGTTTTTCTCACATTTT-GTTATTTTAT-AAACAATTACATGCATGCTATCTAGCGCT---TTAAAAAACCCCATATAACAAGT-TAGTGTAAAACATCTA-TATTGTAGATTGTGGGGTAA-CTACAGTCTTGTATGTTATCAACATT-AATTTTAGTCTTAAGCAGGAGTTCAAAATA--CTCAA-AAC-TTTGTTGTATTATG-TATTCTCTGACTTGCGGTTAATTCTCTGTGTGTTTCCTTTTGAACC--AGACAC-AAAGTCCACTTAAAACAGTTTGA
gi|8 : TAAGGAAGGTCAATACTAT-TAGAAAT-TT--CTGTCAATCAG---CTTC---TTTTTTTCA-TTTAAATAATTTAAA-CAACTCATAAAC--TAACTAAAA-A-------------------TACCTTTGCAGACTA-------TACTTTGTGCGACAGAGCACAT---------AAA-TGCAAAAGCCAAATTTT-AACACAA-AGATATAATGATCTCATGCTTTACTATTTTAT-GCAACA-AAGC-ACATC-AAATTATGC-AATGAAATATA-TAAACTAATAGAAATTCAT-TTA--CTGAGTGATTTTGTAAA------------------GAAATATAGATAATTGCTG-TTT-TTCTG--CTCACA-TCCTTC--ACAAAATAAATC-ACAAAATATC-GCA-ATTTT-AGAAAATT-ATCTA--ATTAT-AAAGTG-T-TTATATGC-CA-GT-------TTTTCTTCAAAAA-ATATTTAGAATTATATCTA
gi|9 : TTAAGGTACTTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTCAATCTTTTTTTCA-TTTAAATGACCTAAC-CAACTCATTAAC--TAACTAAAA-A---AACCATACTG-AGACATGCCTTT-TAAACTAATTTATTTA--GTG-GCTACAGAGCACATGT-AC-CCCAAACTGCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAGGTTAACAAAAAAAAACCCCATATAATATTTCATACCAGTATTGCAAAACAGGGTCACTATAAATAC
Unaligned ( gi|16 ): AGTAATTATATGCGGATTAAAATATTTTCCAGT
Alignments
lowQualScore : 2222 11 22222222 11111 2 1 1 1 1 1 1 1 1 11 11 222222222 1 1 11 11 11 1111 11 2222222 1 1 1 111 333333333 11 22222 11 11 3333333333333 11 111 111 22222222 11111111 11 11 111 11 1 1111 11 111 111 11 1
lowQualScore : 5 5 66 888 0000 5 5 1 33 66666666 5 5 0 99999 0 0 3 8 8 8 0 0 6 0 2 1 1 1 3 0 0 0 0 0 66 0 2 77 33 3 222222222 0 0 1 0 0 11 8 11 11 8 8 8 5555 8 1 11 1 8 8 8 0 8 8 6666666 88 8 0 3 2 5 0 555 3 2 3 1 8 8 0 88 222222222 8 00 8 0 3 0 00000 11 8 0 8 8 8 8 8 8 11 6666666666666 8 66 8 11 1 3 444 222 0 99999999 0 0 5 8 0 22222222 11 8 8 11 8 444 8 8 8 0 8 8 11 0 0 7777 0 8 11 444 444 5 0 11 8 8 5
lowQualScore : . . .. ... .... . . . .. ........ . . . ..... . . . . . . . . . . . . . . . . . . . . .. . . .. .. . ......... . . . . . .. . .. .. . . . .... . . .. . . . . . . . ....... .. . . . . . . ... . . . . . . . .. ......... . .. . . . . ..... .. . . . . . . . . .. ............. . .. . .. . . ... ... . ........ . . . . . ........ .. . . .. . ... . . . . . . .. . . .... . . .. ... ... . . .. . . .
lowQualScore : 7 7 99 888 6666 0 7 0 66 33333333 7 7 8 22222 8 6 2 0 6 0 0 0 5 0 5 0 0 0 2 0 0 0 0 0 88 0 5 00 88 2 555555555 8 0 0 0 8 00 0 00 22 0 0 0 6666 0 4 00 4 0 0 0 6 0 0 0000000 88 0 6 2 5 5 0 222 2 5 2 4 0 0 8 88 000000000 0 44 0 8 2 8 00000 00 0 8 0 0 0 0 0 0 00 0000000000000 0 44 0 00 0 8 000 444 8 00000000 6 6 0 0 8 66666666 00 0 0 00 0 000 0 0 0 8 0 0 00 6 8 0000 8 0 00 222 000 0 8 00 0 0 8
consensus : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAA-A---NA-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCNTNTTTTNTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCAT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAANTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCA-ATTTT-A-AAAATT-CTCTA--AATCT-AAATTG-T-TTACATAC-CA-GT-------TTTTCTT-GAAAA-ATATTTAGAATTATATCTAAGGTTAACAACAAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAACGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
Reference ( family-1117 ) : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAA-A---NA-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCNTNTTTTNTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCAT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAANTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCA-ATTTT-A-AAAATT-CTCTA--AATCT-AAATTG-T-TTACATAC-CA-GT-------TTTTCTT-GAAAA-ATATTTAGAATTATATCTAAGGTTAACAACAAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAACGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
gi|1 : TTTAAGGTAGGTCCATACTCT-AAGAAAT-TT--CTGTCAATTAA---TCT----TTTTTTTCA-TTTAAATGACTTAAT-CAACTCATTAAC--TAACTAAAA-A---CC-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACCCCCAAA-TTCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCATATTTTATCAATTTAT-ACACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATATATATTCACATTA--CTGAGAGAATTTTCAAATAT--ATTTTTTAACTG-AAAACATACAAAATTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-AAAAAATGTC-GCA-ATTTT-A-AAAATT-ATCAA--GATCT-AAATTG-T-TTACATAC-CA-GT-------TTCTCTT-GAAAA-ATATTTAGAATTATTTCTAAGGTTAACAACAAAACGTATTTTATCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGTAATTTCAAGTTTTACAATTATTCTTTGTACACTTTCAAAATAGTAAAATGTAACA-G-CAAATGCAAT-TTTAG---------AATCAA-GATTAACAAAAT-ATATCTATACATATATATG-----TAAAACATATACTAAAAAATTT-GTCCAACCAGACAAA-TTTA-GA-ACA-C-AAGGGGGTG--GGGGTGGGGGCCCAC--TTCGTTTTTCTCACATTTT-GTTATT---T-AA--AATTACATGCATGTTATTT---CAT-GCTCAAAA-------------------ACCAT-AA----------------ATTCTAGG--AACCTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TT------------AAAC-A--CTTAACAAC-TTTGTTG----ATGATTTTCTCTGACATG-G--TAA--TTCTG---GGTTTC-TTTGAACC--AGACA--AAACT-CACT-AAAACAAACTGA
gi|10 : ttTAATCTG--CTCACAATCCTTCCAAGAAAAAAAAGC-ACAAAATATCAGCATATGT----GAAATT-CTCAA--AATCT-AATTTA-TGTCACATACATATGTACCTATGTTTTCTT-GAAAAAATATTTAGAATTATATctt
gi|11 : TTTAAGGTAGGTCAATACTAT-TAGAAAT-TT--CTGTCAGTCAA---TTT----CTTTTTTCA-TTTCAATAACTTTCA-CAACTCACAAACTATAACTAAAA-ATCCCA-TATA-TATAGACATat
gi|12 : --CTATCAATCAA---CTT----CTTTATTAA-TTTAAATAACTTTAA-TAATTCACAAAC--TAACTAAAA-T---CA-CATA-TG-AGACATACtgtactacaggacacatat
gi|14 : TTAAGGTAGGTCCATACTCA-GAGAAAT-TT--ATGCCAATCAATCTTTT----TTTTTTTCA-TT
gi|15 : AAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATG
gi|2 : AATATATTTTACCATAGTTGGCCAGAGATATTT-GCA-AAATGTTCTCTTGAATACGTATACCCCCA-TTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-A-A-CAAAGGGGG-G--GGGG----------C--TTCGTTTTTTCCACATTTT-GTTATTTTAT-AA--AAATGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACAG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
gi|3 : AAATAT-CTTTACCATATTTG-CCAGAGATATTT-GCACAAATGCTCTGCTGAATACGTATACCCC-AATTTTGGCAATTGCAAGT---ACAATTATT--TTGCACACTTTCAAA-TAGTAAAATGTTACA-GGCAAATACAA--CTAGA---------AATCAA-GATCA-TGAAATTATAGCTACATATTCATA--------AAAAC--ATACTGAAAATTGT-GTCCA-CCAGACAAA-TATA-GA-ACA-C-AGGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTTGGTTAATTTATAAA--AACTGCATGCATG-TATCT---GATAAATTAAAAAA--------GAAACATGTACTGT-AAACA--TAGCA-TGTAGATTCTAGG--AA-CTAAGC-CT--TATG-TACAAA---TAAATTTT-GT-TTAA-CAGGAGTTCAAAA-AACCTCAACAACTTGTG-TG----ATGATTTTCTCTGACTTG-G--TAA---TCTG---G--TTTTTTTGAACCCAGGACACAAAACT-CACT-AAAACAGTCTGAat
gi|4 : TAAGGTAGGTCCATACTCTCTGGAAAT-TTTGCTG-CAACCAA---TGC----TCTTTTTCAATTTAAATGACCTAAA-CAACTCATTAACC-TAACTAAAACA---AA-CATA-TG-AGACATAC-TTTGCAGACTAATTTT-A-ACTATGTGCGACAAA-CACATGTTACTCCCAAA-TGCAAAAGCCATATTTTAAACACAAGGGACA-A-T-ATCTCTTTTTTTCTC-ATTTATGGCACCATAAGCAACATCAATATTCAGCTTATA--TTATAGAAAACCAATAGATATT-AT-TTACTCTGAGAGAATTTTCAAATATAGATTC---AATTGAAAAACATACAAATTTGCTGATTTAATCTGGCCTCACA-TGCTTC--AG--AAAAAATCGACAAAATATC-GCA-AATTT-G-AACATTCCTGTAACAATTTCACATTGCT-TTACCTAC-CA-GT-------TTTCCTT-GAAAA-ATG-TTAGAATat
gi|5 : TGTTCTCTTGAATACGTATACCCC--ATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTT-AT-AA--AAATGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACAG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGAagagt
gi|6 : TTTAAGGTAGGTCCATACTCT-TGGGAATATT--CTGTCAACCAA---TCTC---TTTTTTTCA-TTTAAATGACCTAAAACAACTCATTAAC--TAACTAAAACA---AA-CATA-TG-AGACATACCTTTGCAGACTAATTATTA--CTATGTGCTACAGAACACATGT-ACTCCCAAA-TGCAAAAGCCATATTTTTAACACAA-GGACACA-TGATCTCTTTTTTTCTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCA--TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAATTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AG--AAAAAATC-ACAAAATATC-GCA-ATTTTGA-AAAATT-CTGTA--AATTT-CAATTG-T-TTACCTA--CA-GT-------TTTTCT---AAAA-ATG-TTAGAATAATATCTat
gi|7 : AAATGTAACACG-CAAA-ACAATTCTTAATCTAGCATAAGTGAATAATCAA--AATT-ATAACT-CATACT-GTATAGCATTTAAAAT--ATACTGAAAATTTTTGTCCAACCAATCAAAATATATGATACATC-ATGGGTG-GTAGGGG----------CACTTCGTTTTTCTCACATTTT-GTTATTTTAT-AAACAATTACATGCATGCTATCTAGCGCT---TTAAAAAACCCCATATAACAAGT-TAGTGTAAAACATCTA-TATTGTAGATTGTGGGGTAA-CTACAGTCTTGTATGTTATCAACATT-AATTTTAGTCTTAAGCAGGAGTTCAAAATA--CTCAA-AAC-TTTGTTGTATTATG-TATTCTCTGACTTGCGGTTAATTCTCTGTGTGTTTCCTTTTGAACC--AGACAC-AAAGTCCACTTAAAACAGTTTGA
gi|8 : TAAGGAAGGTCAATACTAT-TAGAAAT-TT--CTGTCAATCAG---CTTC---TTTTTTTCA-TTTAAATAATTTAAA-CAACTCATAAAC--TAACTAAAA-A-------------------TACCTTTGCAGACTA-------TACTTTGTGCGACAGAGCACAT---------AAA-TGCAAAAGCCAAATTTT-AACACAA-AGATATAATGATCTCATGCTTTACTATTTTAT-GCAACA-AAGC-ACATC-AAATTATGC-AATGAAATATA-TAAACTAATAGAAATTCAT-TTA--CTGAGTGATTTTGTAAA------------------GAAATATAGATAATTGCTG-TTT-TTCTG--CTCACA-TCCTTC--ACAAAATAAATC-ACAAAATATC-GCA-ATTTT-AGAAAATT-ATCTA--ATTAT-AAAGTG-T-TTATATGC-CA-GT-------TTTTCTTCAAAAA-ATATTTAGAATTATATCTA
gi|9 : TTAAGGTACTTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTCAATCTTTTTTTCA-TTTAAATGACCTAAC-CAACTCATTAAC--TAACTAAAA-A---AACCATACTG-AGACATGCCTTT-TAAACTAATTTATTTA--GTG-GCTACAGAGCACATGT-AC-CCCAAACTGCAA
blockSeqs : C A TG TCT AATC A A A TA ATCCCA C T TATTT A T T C A G C A G T T C A G T A A T AT G C T CT T AGATTC A T A GC A CA AA G A T TGA C A AC C C C G A T ACCTATG TC A T A G T C CA T C A T C G TT TCTAGCATA T AT T C GCATT . T A T T T A . TA CAC G TT A AC A T AGC AAA CCCCATAT G A TCTATAT GT . T TG T CAT A A C G T AC T TATT C GT TTC TGT G CA A C A
blockSeqs : . . . . C . . A C CAAA . . ATTA G . T . T . T . G T T C A . . . . . AA . C T . T ATTC . T . . . . AA . . . TAG . T . T . . . . . . T . T A G . . AA T C A T . . T . . AT . C . . . . . . . . . . C . TT . . C T . AA . G . TAGCA . . . . . . . . . . . . T . . . C . G . . . A
blockSeqs : . . . . C . . T . CAAA . . TTA G . . . . . . . . A G A . . . . . . . . . . . . . . A . . . . . . . . TG . T . T . . . . . . T . . . . . . A . . . T . . T . . T . C . . . . . . . . . . C . TT . . A C . AA . G . TACA . . . . . . . . . . . . T . . . C . T . . . T
blockSeqs : . . . . . . . T . AAAC . . T . . . . . . . . . . . . . T . A . . . . . . . . . A . . . . . A . . . . . . . . . . . . C . T . . T . . . . . . TACA . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . TCA . .
blockSeqs : . . . . . . . T . A . .
blockSeqs : . . . .
blockSeqCons : CAAA**** TG** AT ** C************ TT TACA****
originalCons : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAA-A---NA-CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCNTNTTTTNTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCAT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAANTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCA-ATTTT-A-AAAATT-CTCTA--AATCT-AAATTG-T-TTACATAC-CA-GT-------TTTTCTT-GAAAA-ATATTTAGAATTATATCTAAGGTTAACAACAAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAACGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
finalCons : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAACAAA----CATA-TG-AGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCNTNTTTTNTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCAT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAANTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCA-ATTTTG--AAAATT-CTCTA--AATCT-AAATTG-T-TTACATAC-CA-GT-------TTTTCTT-GAAAA-ATATTTAGAATTATATCTAAGGTTAACAACAAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGGC------------TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACATACA----TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAGGTTAACAAAAAAAAACCCCATATAATATTTCATACCAGTATTGCAAAACAGGGTCACTATAAATAC
Unaligned ( gi|16 ): AGTAATTATATGCGGATTAAAATATTTTCCAGT
Alignments
lowQualScore : 2222 11 33333333 11111 2 1 1 1 1 1 1 1 1 11 11 222222222 1 1 11 11 11 11 2222222 1 1 1 111 333333333 22222 11 11 3333333333333 11 111 111 22222222 11111111 11 11 111 11 1 1111 11 111 111 11 1
lowQualScore : 5 5 66 888 0000 5 5 1 33 33333333 5 0 0 99999 0 0 3 8 8 8 0 0 6 0 2 1 1 1 3 0 0 0 0 0 66 0 2 77 33 3 222222222 0 0 1 0 0 11 8 11 11 8 8 1 999 0 8 1 11 1 8 8 8 0 8 8 6666666 88 8 0 3 2 5 0 555 3 2 3 1 8 8 0 88 222222222 8 44 8 0 3 0 00000 11 8 0 8 8 8 8 8 8 11 6666666666666 8 66 8 11 1 3 444 222 0 99999999 0 0 5 8 0 22222222 11 8 8 11 8 444 8 8 8 0 8 8 11 0 0 7777 0 8 11 444 444 5 0 11 8 8 5
lowQualScore : . . .. ... .... . . . .. ........ . . . ..... . . . . . . . . . . . . . . . . . . . . .. . . .. .. . ......... . . . . . .. . .. .. . . . ... . . . .. . . . . . . . ....... .. . . . . . . ... . . . . . . . .. ......... . .. . . . . ..... .. . . . . . . . . .. ............. . .. . .. . . ... ... . ........ . . . . . ........ .. . . .. . ... . . . . . . .. . . .... . . .. ... ... . . .. . . .
lowQualScore : 7 7 99 888 6666 0 7 0 66 44444444 7 7 8 22222 8 6 2 0 6 0 0 0 5 0 5 0 0 0 2 0 0 0 0 0 88 0 5 00 88 2 555555555 8 0 0 0 8 00 0 00 22 0 0 4 222 8 0 4 00 4 0 0 0 6 0 0 0000000 88 0 6 2 5 5 0 222 2 5 2 4 0 0 8 88 000000000 0 66 0 8 2 8 00000 00 0 8 0 0 0 0 0 0 00 0000000000000 0 44 0 00 0 8 000 444 8 00000000 6 6 0 0 8 66666666 00 0 0 00 0 000 0 0 0 8 0 0 00 6 8 0000 8 0 00 222 000 0 8 00 0 0 8
consensus : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAA----CAAACATA-TGAGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCNTNTTTTNTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCAT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAANTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCAATTTT-G-AAAATT-CTCTA--AATCT-AAATTG-T-TTACATAC-CA-GT-------TTTTCTT-GAAAA-ATATTTAGAATTATATCTAAGGTTAACAACAAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAACGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
Reference ( family-1117 ) : NNTTTAAGGTAGGTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTT----TTTTTTTCA-TTTAAATGACCTAAA-CAACTCATNAAC--TAACTAAAA----CAAACATA-TGAGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACTCCCAAA-TGCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCNTNTTTTNTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCAT-TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAANTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-ACAAAATATC-GCAATTTT-G-AAAATT-CTCTA--AATCT-AAATTG-T-TTACATAC-CA-GT-------TTTTCTT-GAAAA-ATATTTAGAATTATATCTAAGGTTAACAACAAAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTTTAT-AA--AANTGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
gi|1 : TTTAAGGTAGGTCCATACTCT-AAGAAAT-TT--CTGTCAATTAA---TCT----TTTTTTTCA-TTTAAATGACTTAAT-CAACTCATTAAC--TAACTAAAA-----ACCCATA-TGAGACATACCTTTGCAGACTAATTTTTATACTATGTGCTACAGAGCACATGT-ACCCCCAAA-TTCAAAAGCCATATTTT-AACACAA-GGACACA-TGATCTCATATTTTATCAATTTAT-ACACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATATATATTCACATTA--CTGAGAGAATTTTCAAATAT--ATTTTTTAACTG-AAAACATACAAAATTGCTG-TTTAATCTG--CTCACA-TCCTTC--AGAAAAAAAATC-AAAAAATGTC-GCAATTTT-A-AAAATT-ATCAA--GATCT-AAATTG-T-TTACATAC-CA-GT-------TTCTCTT-GAAAA-ATATTTAGAATTATTTCTAAGGTTAACAACAAAACGTATTTTATCATAGTTGGCCAGAGATATTTTGCA-AAATGTTCTCTTGAATACGTATACCCCCAATTTTGGTAATTTCAAGTTTTACAATTATTCTTTGTACACTTTCAAAATAGTAAAATGTAACA-G-CAAATGCAAT-TTTAG---------AATCAA-GATTAACAAAAT-ATATCTATACATATATATG-----TAAAACATATACTAAAAAATTT-GTCCAACCAGACAAA-TTTA-GA-ACA-C-AAGGGGGTG--GGGGTGGGGGCCCAC--TTCGTTTTTCTCACATTTT-GTTATT---T-AA--AATTACATGCATGTTATTT---CAT-GCTCAAAA-------------------ACCAT-AA----------------ATTCTAGG--AACCTACGG-CT--TATG-TACAAA---T-AATTTT-GT-TT------------AAAC-A--CTTAACAAC-TTTGTTG----ATGATTTTCTCTGACATG-G--TAA--TTCTG---GGTTTC-TTTGAACC--AGACA--AAACT-CACT-AAAACAAACTGA
gi|10 : ttTAATCTG--CTCACAATCCTTCCAAGAAAAAAAAGC-ACAAAATATCAGCATATGT-G-AAA-TT-CTCAA--AATCT-AATTTA-TGTCACATACATATGTACCTATGTTTTCTT-GAAAAAATATTTAGAATTATATctt
gi|11 : TTTAAGGTAGGTCAATACTAT-TAGAAAT-TT--CTGTCAGTCAA---TTT----CTTTTTTCA-TTTCAATAACTTTCA-CAACTCACAAACTATAACTAAAAATCCCATATATA-T-AGACATat
gi|12 : --CTATCAATCAA---CTT----CTTTATTAA-TTTAAATAACTTTAA-TAATTCACAAAC--TAACTAAAAT---C--ACATA-TGAGACATACtgtactacaggacacatat
gi|14 : TTAAGGTAGGTCCATACTCA-GAGAAAT-TT--ATGCCAATCAATCTTTT----TTTTTTTCA-TT
gi|15 : AAATATATTTTACCATAGTTGGCCAGAGATATTTTGCA-AAATG
gi|2 : AATATATTTTACCATAGTTGGCCAGAGATATTT-GCA-AAATGTTCTCTTGAATACGTATACCCCCA-TTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-A-A-CAAAGGGGG-G--GGGG----------C--TTCGTTTTTTCCACATTTT-GTTATTTTAT-AA--AAATGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACAG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGA
gi|3 : AAATAT-CTTTACCATATTTG-CCAGAGATATTT-GCACAAATGCTCTGCTGAATACGTATACCCC-AATTTTGGCAATTGCAAGT---ACAATTATT--TTGCACACTTTCAAA-TAGTAAAATGTTACA-GGCAAATACAA--CTAGA---------AATCAA-GATCA-TGAAATTATAGCTACATATTCATA--------AAAAC--ATACTGAAAATTGT-GTCCA-CCAGACAAA-TATA-GA-ACA-C-AGGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTTGGTTAATTTATAAA--AACTGCATGCATG-TATCT---GATAAATTAAAAAA--------GAAACATGTACTGT-AAACA--TAGCA-TGTAGATTCTAGG--AA-CTAAGC-CT--TATG-TACAAA---TAAATTTT-GT-TTAA-CAGGAGTTCAAAA-AACCTCAACAACTTGTG-TG----ATGATTTTCTCTGACTTG-G--TAA---TCTG---G--TTTTTTTGAACCCAGGACACAAAACT-CACT-AAAACAGTCTGAat
gi|4 : TAAGGTAGGTCCATACTCTCTGGAAAT-TTTGCTG-CAACCAA---TGC----TCTTTTTCAATTTAAATGACCTAAA-CAACTCATTAACC-TAACTAAAA----CAAACATA-TGAGACATAC-TTTGCAGACTAATTTT-A-ACTATGTGCGACAAA-CACATGTTACTCCCAAA-TGCAAAAGCCATATTTTAAACACAAGGGACA-A-T-ATCTCTTTTTTTCTC-ATTTATGGCACCATAAGCAACATCAATATTCAGCTTATA--TTATAGAAAACCAATAGATATT-AT-TTACTCTGAGAGAATTTTCAAATATAGATTC---AATTGAAAAACATACAAATTTGCTGATTTAATCTGGCCTCACA-TGCTTC--AG--AAAAAATCGACAAAATATC-GCAAATTT-G-AACATTCCTGTAACAATTTCACATTGCT-TTACCTAC-CA-GT-------TTTCCTT-GAAAA-ATG-TTAGAATat
gi|5 : TGTTCTCTTGAATACGTATACCCC--ATTTTGGCAATTGCAAGTTTTACAATTATTCTTTGCACACTTTCAAAATAGTAAAATGTTACA-G-CAAATACAAT-CTTAA---------AATCAA-GATCAATGAAAT-ATAGCTACATATTCATATA-----TAAAAC--ATACTGAAAATTTT-GTCCAACCAGACAAA-TATA-GA-ACA-C-AAGGGGG-G--GGGG----------C--TTCGTTTTTCTCACATTTT-GTTATTT-AT-AA--AAATGCATGCATGTTATCT---GAT-AATTAAAAAA--------AAAAAATGTACTGT-AAACA--TA-CA-TGTAGATTCTAGG--AA-CTACAG-CT--TATG-TACAAA---T-AATTTT-GT-TTAA-CAGGAGTTCAAAA-A--CTCAACAACTTTTGTTG----ATGATTTTCTCTGACTTG-G--TAA--CTCTG---GGTTTCTTTTGAACC--AGACAC-AAACT-CACTAAAAACAGTCTGAagagt
gi|6 : TTTAAGGTAGGTCCATACTCT-TGGGAATATT--CTGTCAACCAA---TCTC---TTTTTTTCA-TTTAAATGACCTAAAACAACTCATTAAC--TAACTAAAA----CAAACATA-TGAGACATACCTTTGCAGACTAATTATTA--CTATGTGCTACAGAACACATGT-ACTCCCAAA-TGCAAAAGCCATATTTTTAACACAA-GGACACA-TGATCTCTTTTTTTCTCAATTTAT-GCACCA-AAGC-ACATC-ATATTCAGC-TATAATTTATA-AAAACCAATAGATATTCA--TTA--CTGAGAGAATTTTCAAATAT--ATTC---AATTG-AAAACATACAAATTTGCTG-TTTAATCTG--CTCACA-TCCTTC--AG--AAAAAATC-ACAAAATATC-GCAATTTT-GAAAAATT-CTGTA--AATTT-CAATTG-T-TTACCTA--CA-GT-------TTTTCT---AAAA-ATG-TTAGAATAATATCTat
gi|7 : AAATGTAACACG-CAAA-ACAATTCTTAATCTAGCATAAGTGAATAATCAA--AATT-ATAACT-CATACT-GTATAGCATTTAAAAT--ATACTGAAAATTTTTGTCCAACCAATCAAAATATATGATACATC-ATGGGTG-GTAGGGG----------CACTTCGTTTTTCTCACATTTT-GTTATTTTAT-AAACAATTACATGCATGCTATCTAGCGCT---TTAAAAAACCCCATATAACAAGT-TAGTGTAAAACATCTA-TATTGTAGATTGTGGGGTAA-CTACAGTCTTGTATGTTATCAACATT-AATTTTAGTCTTAAGCAGGAGTTCAAAATA--CTCAA-AAC-TTTGTTGTATTATG-TATTCTCTGACTTGCGGTTAATTCTCTGTGTGTTTCCTTTTGAACC--AGACAC-AAAGTCCACTTAAAACAGTTTGA
gi|8 : TAAGGAAGGTCAATACTAT-TAGAAAT-TT--CTGTCAATCAG---CTTC---TTTTTTTCA-TTTAAATAATTTAAA-CAACTCATAAAC--TAACTAAAA-------------------ATACCTTTGCAGACTA-------TACTTTGTGCGACAGAGCACAT---------AAA-TGCAAAAGCCAAATTTT-AACACAA-AGATATAATGATCTCATGCTTTACTATTTTAT-GCAACA-AAGC-ACATC-AAATTATGC-AATGAAATATA-TAAACTAATAGAAATTCAT-TTA--CTGAGTGATTTTGTAAA------------------GAAATATAGATAATTGCTG-TTT-TTCTG--CTCACA-TCCTTC--ACAAAATAAATC-ACAAAATATC-GCAATTTTAG-AAAATT-ATCTA--ATTAT-AAAGTG-T-TTATATGC-CA-GT-------TTTTCTTCAAAAA-ATATTTAGAATTATATCTA
gi|9 : TTAAGGTACTTCCATACTCT-TAGAAAT-TT--CTGTCAATCAA---TTCAATCTTTTTTTCA-TTTAAATGACCTAAC-CAACTCATTAAC--TAACTAAAA----AAACCATACTGAGACATGCCTTT-TAAACTAATTTATTTA--GTG-GCTACAGAGCACATGT-AC-CCCAAACTGCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAGGTTAACAAAAAAAAACCCCATATAATATTTCATACCAGTATTGCAAAACAGGGTCACTATAAATAC
Unaligned ( gi|16 ): AGTAATTATATGCGGATTAAAATATTTTCCAGT