lowQualScore : 111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 222 7777 444 1 3333 2 111 66666666666666666666 1 1 222 1 22222222222 1111 1 1111 222 2222 88888888888888888 1 1 1 22 1 22 22 1 1 4444444 22 000000 1 5555555555 22 1 888888888888 1 222222 1 22222 4444444444444444444 22222 1 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222 1 000000000000000000000000000000000000 333 55555555
lowQualScore : 777 0000 666 7 6 5555 6 99 999 6 6 11111111111111111111 6 3 2 444 7 66666666666 4 8888 0 4444 3 2 9999999 1 44 3 777 1111 33333333333333333 6 7 6 6 5 5 33 6 5 33 6 33 6 5 6 5 1111111 11 6 777777 6 6 5 6 2222222222 11 5 6 999999999999 0 3 999999 3 6 6 22222 0000000000000000000 55555 0 0 3 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 2 999 3333 0 6 999999999999999999999999999999999999 000 2 66666666 4
lowQualScore : ... .... ... . . .... . .. ... . . .................... . . . ... . ........... . .... . .... . . ....... . .. . ... .... ................. . . . . . . .. . . .. . .. . . . . ....... .. . ...... . . . . .......... .. . . ............ . . ...... . . . ..... ................... ..... . . . ........................................................................................................ . . ... .... . . .................................... ... . ........ .
lowQualScore : 000 0000 777 3 7 7777 7 77 333 0 0 77777777777777777777 7 3 7 333 3 77777777777 2 8888 0 0000 6 9 3333333 1 66 6 555 3333 00000000000000000 0 0 0 0 0 0 00 0 0 00 0 00 0 0 0 0 0000000 00 0 000000 0 0 0 0 0000000000 00 0 0 000000000000 7 3 333333 3 7 7 00000 7777777777777777777 00000 0 0 2 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 5 222 5555 0 0 000000000000000000000000000000000000 000 5 00000000 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCAAGACAATGGNCTCACGGC-GGTGTGACCGGTAAACAGGG--ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGG----CGNGTCCAGTGG-CCNTGT--TTGCCCAAC-TNTT-ATTT-TATTATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-TGCATTATCATTCTGCATA---AATCAATATTATTGAAATGATTTTTTATAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCACGTTTAAAGACAGCATTTCGTAACTTTTATGGGCGTTATAATGGTTGAATTTGAGAGTA-AG---TTCAACAGATTNNNNNNNNNNNNNNAACTACAAATTGCTC-CATTTACCTGATCAAGACAATGGTCAC-GGCGGGTGTGACCGGTAAACAG--GGC-AT-GCTTACTCCTCCTAGGNACCNGTGTGACC--GGTAAACA-GAG-GA-TGCTT-----AC-TCCTC-CTAGA-----------A---CCT--GTG--TG-A---CCGGTCAAACAGAGGA-TG-CTT-----ACTCCTC-CTA-GA----CATCTG-C-C-ACCTC-TAG-----TGTGTGACCGGTCGACAG-GGNATG-CTTACTCCTCCTATGGAACCTGATNCCNNNCCTTCTGGCG-NGTCCNGNGGTCCGTNTGTTTNCCCAACANATTCNTCTGTAT
Reference ( gi|1 ) : TCCACACAATAAATTAAATACTAGACTTTTGATCCGAACAATG----CACGG---GTGTGATCGGTCAACAGGAG-ATGCTTA-TCCTCCTGGGCA-CCTAATCTC-A-C--TCAGG----TGTCACCAGGGG-CCATGC--TTGCTCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAG---CAATAGTGCATTGTCA-TCTGCATATATAATTAATTTCACTCAACTGATTCATTACACTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTTTCATTTAAAATCAACATTTCGTAAATTCTATGGTCGTTATAAGAATTCTATTTGCAAATACAACCTTTCAATAGACTGCTCTTTATGTACCAAGTACGAATTATTTACATT-ACCTGATCAAGGAAAGGATCACTAGCAG-TGT--CCGGTGATCAG--GAG-AT-GCTTACTCCTCCTAGACACCTGTGTGACA--GGTCTGCA-GAG-GA-TGCTT-----AC-TCCTC-CTAGA----------CA---CCT--GTA--TG-A---CCGGTCAG-CAGAGGA-TG-CTT-----ACTCCTC-CTA-GA----CATCTG-TGTGACCTCCTAGACACCTGTGTGACCGGTCAGCAG-AGGATG-CTTACTCCTTCTA-GACACCTGTTATTATA---TCTGGTGTTGTCGGGGGGTCC--GTGTTTGCCC----TATTCTTTTGTATCGCTGCTCCCCATGTTCATATTTCACCCTATTGTCTTTAGATAATGGTTTACTGAAC
gi|2 : TGATCAAGACAATGGT--CACGGCGGGTGTGACCGGTAAACAGGGC-ATATTTACTCCTCCTATG-A-TCTGATCCC-A-CCTTCTGG----CGCGTCTAGGGT-CCGTGTGTTTGCCCAACATATTCATCTGTATTCTA---TTT-AGG--AACTTGC-GAGAT-TGATCA-------CTGTTCGTTATCTTTGCATTTA--CAT-
gi|4 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttaccACAATGGGCTCACGGCTGGTGTGGCCAGTCGACAT-----TGCTTACTCCTCCTAAGAA-CCTGATCCC-AAC--TCTGG----TGAGTCCAGTGGTCCTTGT--TTTTCCAAC-TTTT-GTTT-TATAATC---TAT-TTGGGA-CGTAT-GTGAT-TGATAG-------CTGTTCGTTATCTTTGCCTTagataagat
gi|3 : gG---GTGTAA-CGGTAAACAGGGGGATGCTTA-TCCTCaataagacagatgttaact
gi|6 : ataggtgtacaccggttaaacaggggagcttctctccacaataGGCAACCTGATTCCGA-C--GCCGGCTGTTGTACCCAGTGG-TCCTGT--TTGC-CAAC--CTC-ATTT-TGGCATTCCATTG-TTG--A-CTTAT-GAGATCTGATCA-------TTGTGCGTTAACTTagataggtgtaacacgggtaaacaggagagatgcttacgtccttcagaataggtgaaacccggttagacaggggtgttactctcaagacaataggtgtaacggttgcagcgggatgcttactcc
gi|19 : TTATT---TTTATTG----TTTAT-GAGAT-TGATTA-------CTATTTGTTATCTTTGCCTTTT--TAT-gcatt
gi|14 : --A-CTTATTGAGAT-TGATCC-------TCGTTTGTTA-CTTTGCCTTTA--CAT-G
gi|17 : tagga--A-CTTCC-GAGAT-TGATCA-------CTG---------TTTGCCTTTT--CAT-TTAatgaatatgatt
gi|20 : -CTTAT-GAGAT-TGATCA-------CTATTCTGCATCTTCACCTTTT--CAT-catatcacattacttacgta
gi|15 : TTAT-GAGAT-TGATCA-------TTGTTCACTACCTTCACCTTTTTCCATCGTAGA--TAATAG
gi|21 : TGT-GAGAT-TGATCA-------CCTTTCGTTATCTTCACCTTTT--CAT-aattg
gi|18 : TAT-GAGAT-TGATCAGTGATCACTGCTCGTTATCTTCATTTTTT--CAT-GTAG---ta
gi|8 : atta-GAGAT-TAATCA-------CT--TCATTATCTTTTCCTTTT--CAT-GCAC---CAATG--ACATTATTA-T----ATA---AATCAATATTATTGAAATGATTTTTTATAATA
gi|9 : AGAC-TGATCA-------CTGTTCGTTGTCTTTGCTTTTA--CAT-tag
gi|22 : AGAT-TGATCA-------TTTTTCGTTATCTTTGCATTTA--CAcatacaaatgaaaagatgtttgacatgccatagctagggatcattaagcatt
gi|16 : AT-TGATCA-------CTGTGCGTTATCTTTGCC--TT--CAT-ATTGATCCAA-ACTGCAT--TCATTCTGCA
gi|11 : ACAGTCACGTTTAAAGACAGCATTTCGTAACTTTTATGGGCGTTATAATGGTTGAATTTGAGAGTA-AG---TTCAACAGATT
gi|2 : caAACTACAAATTGCTC-CATTTACCTGATCAAGACAATGGTCAC-GGCGGGTGTGACCGGTAAACAG--GGC-AT-ATTTACTCCTCCTA
gi|3 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattCGGTAAACAG--GGGGAT-GCTTA-TCCTC--AGATA--GGTGTAACACGGGTAAACAGGAGAGA-TGCTT-----ACGTCCTT-C-AGA--------------------ATAGGTG-AAACCCGGTTAGACAG-GGG-TG--TT-----ACTC--T-CAA-GA----CA---------A-----TAG------GTGTAA-CGGTT-GCAGCGGGATG-CTTACTCCtgatctgatcccaccttctggcgcgtctagggtccgtgtgtttgcccaacatattcatctgtattctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
gi|4 : ataggtgtacaccggttaaacaggggagcttctctccacaataggtgtaaGTGGCCAGTCGAC-ATTGCTTACTCCTCCTAAGAACCTG
gi|2 : gacaatgggctcacggctggtGTGTGACC--GGTAAACA-GGG-CA-TATTT-----AC-TCCTC-CTAatcccaactctggtgagtccagtggtccttgtttttccaacttttgttttataatctatttgggacgtatgtgattgatagctgttcgttatctttgccttaataagacagatgttaact
gi|4 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttacctgatcaagacaatggtcacggcggGTGTGGCC--AGTCGACA-T------TGCTT-----AC-TCCTC-CTAAG----------AA---CCT--Gtgatctgatcccaccttctggcgcgtctagggtccgtgtgtttgcccaacatattcatctgtattctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
gi|7 : gacaatgggctcacggctgCA-GAG-GAATGCTTTGATTAC-TCCTCATTAGAACCACATATACATAACCTCAGTG--TGGA---CCGGTCAA-CAGAGAA-TGTCTT-----atcccaactctggtgagtccagtggtccttgtttttccaacttttgttttataatctatttgggacgtatgtgattgatagctgttcgttatctttgccttaataagacagatgttaact
gi|2 : gtaaactggtcaaa--GTG--TG-A---CCGGTAAA-CAGGGCA-TA-TTT-----ACTCCTC-CTATG------ATCTGATCCCACCTTCTGG
gi|4 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttacctgatcaagacaatggtcacggcgg--GTG--TG-G---CCAGTCGA-CAT-----TG-CTT-----ACTCCTC-CTA-AG----AACCTG-cgcgtctagggtccgtgtgtttgcccaacatattcatctgtattctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
gi|7 : gacaatgggctcacggctg-A---CTGGTCAAACAGAGGAATG-CTTTGATTACTCCTCATTA-GAACCACATATA-CATAACCTC--AG-----TGTG-GACCGGTCAACAG-AGAATGTCTTatcccaactctggtgagtccagtggtccttgtttttccaacttttgttttataatctatttgggacgtatgtgattgatagctgttcgttatctttgccttaataagacagatgttaact
gi|2 : gtaaGTGTGACCGGTAAACAG-GGCATA-TTTACTCCTCCTATG--ATCTG--ATCCCACCTTCTGGCG-CGTC-TAGGGTCCGTGTGTTTGCCCAACATATTCATCTGTAT
gi|4 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttacctgatcaagacaatggtcacggcggGTGTGGCCAGTCGACAT-----TG-CTTACTCCTCCTA-AGAACCTGATCCCAAC---TCTGGTG-AGTCCAGTGGTCC--TTGTTTTTCC----AA--CTTTTGTtctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): ATACAAGCCATACATTACACAGGTCCTCCATAGCACCCTGATCCCAGACCTATTCCATGAGAGTTCGCCTTTCCCAGCAACTTATTTGTATTCTGCGTTGAAGAATTAGCGAGATTGATCGACTGT
Unaligned ( gi|10 ): GCCTCTCCTAAGCACACTCTCGATCCCACACTCGTGTGGATTGAGTCCAGTTTTTTCCAACTCTTGTTTTTACTATTACGTAT
Unaligned ( gi|12 ): TGTATGACCTATATATTAATATTGTATTCCATATAGGAGTTTCAAAATTGATCATTGTTCAATACTTTACATTTTCA
Unaligned ( gi|13 ): TTCTATTTTGGAACTTACGAATTTGTCACTGAATCGTTATACATTGCCTTATACATACATTATATAAATACATA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 333 22222 3333 111 111111 2222 1 11 111 1 2 111 1111 22222222 2 333 777777777777777777777777777777777777777777777777777777777777777777777777 44444444 11111111111111 2 1 11 22 1 1 55555555555555 3333 2 1 22 22 5555555 111 1 1 1 1 222222 1 111 33333333333333333333333333333333 2222 111 1 11 99999999999999999999 44 11 55 88888
lowQualScore : 3 222 11111 7 1111 6 1 111 444444 4 1111 222 3 0 1 33 6 444 0 0 2 444 8 0000 3 2 8888888 0 44 00000000 3 888 11 3 555 4 2 3 4 3 222222222222222222222222222222222222222222222222222222222222222222222222 4 4 2 2 3 66 3 11111111 7 44444444444444 2 0 5 2 3 44 0 2 00 2 0 0 8 3 55 2 11111111111111 0 1111 6 3 00 22 1111111 777 0 3 0 3 0 0 777777 0 2 333 77777777777777777777777777777777 3 0000 555 0 44 22 6 77777777777777777777 6 11 66 1 55 1 66666 1 6
lowQualScore : . ... ..... . .... . . ... ...... . .... ... . . . .. . ... . . . ... . .... . . ....... . .. ........ . ... .. . ... . . . . . ........................................................................ . . . . . .. . ........ . .............. . . . . . .. . . .. . . . . . .. . .............. . .... . . .. .. ....... ... . . . . . . ...... . . ... ................................ . .... ... . .. .. . .................... . .. .. . .. . ..... . .
lowQualScore : 0 000 77777 0 7777 7 0 000 888888 2 2222 555 0 0 0 88 5 222 0 0 2 000 0 9999 3 7 7777777 3 22 22222222 4 777 55 7 000 0 5 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000 0 0 5 5 0 55 7 33333333 3 00000000000000 5 0 5 5 0 00 7 5 55 5 0 0 8 2 88 5 11111111111111 7 7777 7 3 00 00 7777777 555 0 2 0 2 0 0 555555 0 5 888 00000000000000000000000000000000 2 0000 000 0 22 55 0 00000000000000000000 0 00 00 0 00 0 00000 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCAT-CTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTNNATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACA-GGGGATGCTTACTCCTCC----TAGACA---GTGTAAC-C-GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGA-A--T--GTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCTA-GACACCTGTTATTATA---TCTGGTGTTGTCGGGGGGTCCG--TGTTTGCCC----TATTCTTTTGTAT
Reference ( family-11 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCAAGACAATGGNCTCACGGC-GG-TGTGACCGGTAAACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GNGTCCAGTGG-CCNTGT--TTGCCCAAC-TNTT-ATTT-TATTATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCATTCTGCATA---AATCAATATTATTGAAATGATTTTTTATAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCACGTTTAAAGACAGCATTTCGTAACTTTTATGGGCGTTATAATGGTTGAATTTGAGAGTA-A--G---TTCAACAGATTNNNNNNNNNNNNNNAACTACAAATTGCTC-CATTTACCTGATCAAGACAATGGTCAC-GGCGGGTGTG-ACCGGT-AAACA-GGGCATGCTTACTCCTCC----TAGGNACCNGTGTGAC-C-GGTAAACA-GAG-GATGCTTAC-TCCTCCTAGA-ACCT--GTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACATC--TGC--CACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGNATG-CTTACTCCTCCTATGGAACCTGATNCCNNNCCTTCTGGCG-NGTCCNGNGGTCCGTNTGTTTNCCCAACANATTCNTCTGTAT
gi|1 : TGATCCGAACAATG----CACGG---G-TGTGATCGGTCAACAGGAG-ATGCTTA-TCCTCCTGGGCA-CCTAATCTC-A-C--TCAGGT----GTCACCAGGGG-CCATGC--TTGCTCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAG---CAATAGT-GCATTGTCAT-CTGCATATATAATTAATTTCACTCAACTGATTCATTACACTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTTTCATTTAAAATCAACATTTCGTAAATTCTATGGTCGTTATAAGAATTCTATTTGCAAATACA--ACCTTTCAATAGACTGCTCTTTATGTACCAAGTACGAATTATTTACATT-ACCTGATCAAGGAAAGGATCACTAGCAG-TGT---CCGGT-GATCA-GGAGATGCTTACTCCTCC----TAGACACCTGTGTGAC-A-GGTCTGCA-GAG-GATGCTTAC-TCCTCCTAGACACCT--GTATGA---C-CGGTC-AGCA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACATCTGTGT--GACCTCCTAGACACCTGTGTGA---CCGGTC-AGCAG-AGGATG-CTTACTCCTTCTA-GACACCTGTTATTATA---TCTGGTGTTGTCGGGGGGTCCG--TGTTTGCCC----TATTCTTTTGTAT
gi|11 : tccacacaataaattaaatactagactttACAGTCACGTTTAAAGACAGCATTTCGTAACTTTTATGGGCGTTATAATGGTTGAATTTGAGAGTA-A--G---TTCAACAGATTcgctgctccccatgttcatatttcaccctattgtctttagataatggtttactgaac
gi|14 : ca--A-CTTATTGAGAT-TGATCC-------TCGTTTGTTA-CTTTGCCTTTA--CAT-GATG----AATA-T-G-ATT
gi|15 : taggaTTAT-GAGAT-TGATCA-------TTGTTCACTACCTTCACCTTTTTCCATCGTAGA--TAATA-
gi|16 : AT-TGATCA-------CTGTGCGTTATCTTTGCC--TT--CAT-ATTGATCCAAAC-T-GCAT--TCATTCTGCAgaattg
gi|17 : --A-CTTCC-GAGAT-TGATCA-------CTG---------TTTGCCTTTT--CAT-TT--A--C-ATA-TCACATTA
gi|18 : TAT-GAGAT-TGATCAGTGATCACTGCTCGTTATCTTCATTTTTT--CAT-GTAGcttacgta
gi|19 : attaTTATT---TTTATTG----TTTAT-GAGAT-TGATTA-------CTATTTGTTATCTTTGCCTTTT--TAT-
gi|2 : TTTCATAGCA-ATTG---TTAAGCCG-TTTCCATGCAGTGATTAACTACAAATTGCTC-CATTTACCTGATCAAGACAATGGTCAC-GGCGGGTGTG-ACCGGT-AAACA-GGGCATATTTACTCCTCC----TA
gi|2 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgTGATCAAGACAATGG--TCACGGC-GGGTGTGACCGGTAAACAGG-GCATATTTACTCCTCCTATG-A-TCTGATCCC-A-CCTTCTGGC----GCGTCTAGGGT-CCGTGTGTTTGCCCAACATATTCATCTGTATTCTA---TTT-AGG--AACTTGC-GAGAT-TGATCA-------CTGTTCGTTATCTTTGCATTTA--CA---TAGA--TAAGA-T-tgatctgatcccaccttctggcgcgtctagggtccgtgtgtttgcccaacatattcatctgtattctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
gi|20 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttacc-CTTAT-GAGAT-TGATCA-------CTATTCTGCATCTTCACCTTTT--CAT-
gi|21 : TGT-GAGAT-TGATCA-------CCTTTCGTTATCTTCACCTTTT--CAT-
gi|22 : AGAT-TGATCA-------TTTTTCGTTATCTTTGCATTTA--CAta
gi|3 : GGTGTACACCGGTTAAACA-GGGGA-GCTT-CT-CTCCACAATAG------GTGTAA--C-GGTAAACAGGGG-GATGCTTA--TCCTC--AGA----TAGGTGTAA---CACGGGTAAACAGGAGAG-ATGC-----TTACGTCCTT-C-AG----A-A----------------TAG--------GTGAAACCCGGTTAGACAG-GGG-TG--TTACTC
gi|3 : ataCAC-AATAGGTGTA-AC-GGT-AAACAGGGGGATGCTTA-TCCTC------AGATA--GGTGTAACACGGGTAAACAGGAGAGATGCTTACGTCCTTC-AGA-A--T--AGGTGAAACC-CGGTTAGACA-G-G-G-GTG------TTAC-TC--T-CAAG----ACA----------A-----TAG------GTGTAA----CGGTT-G-CAGCGGGATG-CTTACTCCtcaagacaataggtgtaacggttgcagcgggatgcttactcc
gi|4 : ataggtgtacaccggttaaacaggggagcttctctcGACAATGGGCTCACGGCTGG-TGTGGCCAGTCGACAT-----TGCTTACTCCTCCTAAG-AACCTGATCCC-AAC--TCTGGT----GAGTCCAGTGGTCCTTGT--TTTTCCAAC-TTTT-GTTT-TATAATC---TAT-TTGGGA-CGTAT-GTGAT-TGATAG-------CTGTTCGTTATCTTTGCCTT
gi|6 : -A-CCTGATTCCGA-C--GCCGGCTGTTGTACCCAGTGG-TCCTGT--TTG-CCAAC--CTC-ATTT-TGGCATTCCATTG-TTG--A-CTTAT-GAGATCTGATCA-------TTGTGCGTTAACTTaataagacagatgttaact
gi|7 : ggcaA---C-TGGTCAAACA-GAG-GAATGCTTTGATTAC-TCCTCATTAGAACCACATA--TACATAACCT-C-AG-----TGTG-GA---CCGGTC-AACAG-AGAATGTCTTgcatt
gi|8 : gtaa-GAGAT-TAATCA-------CT--TCATTATCTTTTCCTTTT--CAT-GCAC---CAATG---ACATTATTAT-----ATA---AATCAATATTATTGAAATGATTTTTTATAATA
gi|9 : AGAC-TGATCA-------CTGTTCGTTGTCTTTGCTTTTA--CAT--CATA--CAA-A-T-Gtag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACAAGCCATACATTACACAGGTCCTCCATAGCACCCTGATCCCAGACCTATTCCATGAGAGTTCGCCTTTCCCAGCAACTTATTTGTATTCTGCGTTGAAGAATTAGCGAGATTGATCGACTGT
Unaligned ( gi|10 ): GCCTCTCCTAAGCACACTCTCGATCCCACACTCGTGTGGATTGAGTCCAGTTTTTTCCAACTCTTGTTTTTACTATTACGTAT
Unaligned ( gi|12 ): TGTATGACCTATATATTAATATTGTATTCCATATAGGAGTTTCAAAATTGATCATTGTTCAATACTTTACATTTTCA
Unaligned ( gi|13 ): TTCTATTTTGGAACTTACGAATTTGTCACTGAATCGTTATACATTGCCTTATACATACATTATATAAATACATA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 222 22222 3333 111 111111 2222 1 11 111 1 1 111 1111 11111111 1 222 44444444 1 1 11111 11 1 1 3333333333333333 22 1 1 22 111 3333 111 1 1 1 1 222222 1 111 33333333333333333333333333333333 2222 111 1 11
lowQualScore : 2 555 11111 0 1111 6 1 111 444444 4 1111 555 1 0 1 33 2 333 0 5 1 444 8 0000 3 2 8888888 0 44 99999999 3 888 11 3 6 111 1 1 1 1 1 1 1 1 1 1 22 1 11111111 7 1 1 1 333 1 5 5 1 1 66666 77 2 0 0 3 55 2 8888888888888888 88 3 6 3 00 555 6666 777 0 3 0 3 0 0 777777 0 2 333 33333333333333333333333333333333 3 0000 555 0 3 22 99 4
lowQualScore : . ... ..... . .... . . ... ...... . .... ... . . . .. . ... . . . ... . .... . . ....... . .. ........ . ... .. . . ... . . . . . . . . . . .. . ........ . . . . ... . . . . . ..... .. . . . . .. . ................ .. . . . .. ... .... ... . . . . . . ...... . . ... ................................ . .... ... . . .. .. .
lowQualScore : 5 000 77777 7 7777 7 0 000 888888 2 2222 888 0 0 0 88 5 555 0 0 4 000 0 9999 3 7 7777777 3 22 99999999 4 777 55 3 7 555 0 0 0 0 0 0 0 0 0 0 00 0 33333333 3 0 0 0 000 0 5 5 0 0 77777 00 5 0 0 2 88 5 4444444444444444 33 3 7 3 00 333 0000 555 0 2 0 2 0 0 555555 0 5 888 55555555555555555555555555555555 2 0000 000 0 2 55 77 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAAC--GG-TAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
Reference ( family-11 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTNNATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAAC-CGG-TAAACAGGAG-GATGCTTAC-TCCTCC-AGA-A--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCTAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|1 : TGATCCGAACAATG----CACGG---G-TGTGATCGGTCAACAGGAG-ATGCTTA-TCCTCCTGGGCA-CCTAATCTC-A-C--TCAGGT----GTCACCAGGGG-CCATGC--TTGCTCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAG---CAATAGT-GCATTGTCA-TCTGCATATATAATTAATTTCACTCAACTGATTCATTACACTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTTTCATTTAAAATCAACATTTCGTAAATTCTATGGTCGTTATAAGAATTCTATTTGCAAATACA--ACCTTTCAATAGACTGCTCTTTATGTACCAAGTACGAATTATTTACA-TTACCTGATCAAGGAAAGGATCACTAGC-AGTGT---CCGGT-GATCAGGAG-ATGCTTACTCCTCC----TAGACACCTG-TGTGAC-AGG-TCTGCA-GAG-GATGCTTAC-TCCTCCTAGACACCTGTATGA---C-CGGTC-AGCA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACATCTGTGT--GACCTCCTAGACACCTGTGTGA---CCGGTC-AGCAG-AGGATG-CTTACTCCTTCTAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|11 : tccacacaataaattaaatactagactttACAGTCACGTTTAAAGACAGCATTTCGTAACTTTTATGGGCGTTATAATGGTTGAATTTGAGAGTA-A--G---TTCAACAGATTcgctgctccccatgttcatatttcaccctattgtctttagataatggtttactgaac
gi|14 : ca--A-CTTATTGAGAT-TGATCC-------TCGTTTGTTA-CTTTGCCTTTA--CAT-GATG----AATA-T-G-ATT
gi|15 : taggaTTAT-GAGAT-TGATCA-------TTGTTCACTACCTTCACCTTTTTCCATCGTAGA--TAATA-
gi|16 : AT-TGATCA-------CTGTGCGTTATCTTTGCC--TT--CAT-ATTGATCCAAAC-T-GCAT--TCATTCTGCAgaattg
gi|17 : --A-CTTCC-GAGAT-TGATCA-------CTG---------TTTGCCTTTT--CAT-TT--A--C-ATA-TCACATTA
gi|18 : TAT-GAGAT-TGATCAGTGATCACTGCTCGTTATCTTCATTTTTT--CAT-GTAGcttacgta
gi|19 : attaTTATT---TTTATTG----TTTAT-GAGAT-TGATTA-------CTATTTGTTATCTTTGCCTTTT--TAT-
gi|2 : TGTGTTTCATAGCA-ATTG---TTAAGCCG-TTTCCATGCAGTGATTAACTACAAATTGCTC-CATTTACCTGATCAAGACAATGGTCAC-GGCGGGTGTG-ACCGGT-AAACAGGGC-ATATTTACTCCTCC----TA
gi|2 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaaTGATCAAGACAATGG--TCACGGC-GGGTGTGACCGGTAAACAGG-GCATATTTACTCCTCCTATG-A-TCTGATCCC-A-CCTTCTGGC----GCGTCTAGGGT-CCGTGTGTTTGCCCAACATATTCATCTGTATTCTA---TTT-AGG--AACTTGC-GAGAT-TGATCA-------CTGTTCGTTATCTTTGCATTTA--CA---TAGA--TAAGA-T-tgatctgatcccaccttctggcgcgtctagggtccgtgtgtttgcccaacatattcatctgtattctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
gi|20 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttacc-CTTAT-GAGAT-TGATCA-------CTATTCTGCATCTTCACCTTTT--CAT-
gi|21 : TGT-GAGAT-TGATCA-------CCTTTCGTTATCTTCACCTTTT--CAT-
gi|22 : AGAT-TGATCA-------TTTTTCGTTATCTTTGCATTTA--CAta
gi|3 : GGTGTACACCGGTTAAACAGGGG-A-GCTT-CTC-TCCACAATAG------G-TGTAAC--GG-TAAACAGGGG-GATGCTTA--TCCT-C-AGATA--GGTGTAA---CACGGGTAAACAGGAGAG-ATGC-----TTACGTCCTT-C-AG----A-A----------------TAG--------GTGAAACCCGGTTAGACAG-GGG-TG--TTACTC--TCAAGACA
gi|3 : ataCAC-AATAGGTGTA-AC-GGT-AAACAGGGGGATGCTTA-TCCTC------AGATA---GGTGTAACACGGGTAAACAGGAGAGATGCTTACGTCCTTC-AGA-A--TAGGTGAAACC-CGGTTAGACA-G-G-G-GTG------TTAC-TC--T-CAAG----ACA----------A-----TAG------GTGTAA----CGGTT-G-CAGCGGGATG-CTTACTCCataggtgtaacggttgcagcgggatgcttactcc
gi|4 : ataggtgtacaccggttaaacaggggagcttctctcGACAATGGGCTCACGGCTGG-TGTGGCCAGTCGACAT-----TGCTTACTCCTCCTAAG-AACCTGATCCC-AAC--TCTGGT----GAGTCCAGTGGTCCTTGT--TTTTCCAAC-TTTT-GTTT-TATAATC---TAT-TTGGGA-CGTAT-GTGAT-TGATAG-------CTGTTCGTTATCTTTGCCTT
gi|6 : -A-CCTGATTCCGA-C--GCCGGCTGTTGTACCCAGTGG-TCCTGT--TTGCC-AAC--CTC-ATTT-TGGCATTCCATTG-TTG--A-CTTAT-GAGATCTGATCA-------TTGTGCGTTAACTTaataagacagatgttaact
gi|7 : ggcaA---C-TGGTCAAACA-GAG-GAATGCTTTGATTAC-TCCTCATTAGAACCACATA--TACATAACCT-C-AG-----TGTG-GA---CCGGTC-AACAG-AGAATGTCTTgcatt
gi|8 : gtaa-GAGAT-TAATCA-------CT--TCATTATCTTTTCCTTTT--CAT-GCA-C--CAATG---ACATTATTA-T----ATA---AATCAATATTATTGAAATGATTTTTTATAATA
gi|9 : AGAC-TGATCA-------CTGTTCGTTGTCTTTGCTTTTA--CAT--CATA--CAA-A-T-Gtag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACAAGCCATACATTACACAGGTCCTCCATAGCACCCTGATCCCAGACCTATTCCATGAGAGTTCGCCTTTCCCAGCAACTTATTTGTATTCTGCGTTGAAGAATTAGCGAGATTGATCGACTGT
Unaligned ( gi|10 ): GCCTCTCCTAAGCACACTCTCGATCCCACACTCGTGTGGATTGAGTCCAGTTTTTTCCAACTCTTGTTTTTACTATTACGTAT
Unaligned ( gi|12 ): TGTATGACCTATATATTAATATTGTATTCCATATAGGAGTTTCAAAATTGATCATTGTTCAATACTTTACATTTTCA
Unaligned ( gi|13 ): TTCTATTTTGGAACTTACGAATTTGTCACTGAATCGTTATACATTGCCTTATACATACATTATATAAATACATA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 222 22222 3333 111 111111 2222 1 11 111 1 1 111 1111 11111111 1 222 44444444 1 1 11111 11 1 1 44444444444444 333 1 22 111 2222 111 1 1 1 1 222222 1 111 33333333333333333333333333333333 2222 111 1 11
lowQualScore : 2 555 11111 0 1111 6 1 111 444444 4 1111 555 1 0 1 33 2 333 0 5 1 444 8 0000 3 2 8888888 0 44 99999999 3 888 11 3 6 111 1 1 1 1 1 1 1 1 1 1 1 11111111 7 1 1 1 333 1 5 5 1 1 66666 77 2 0 0 3 55 2 88888888888888 666 6 3 00 555 1111 777 0 3 0 3 0 0 777777 0 2 333 33333333333333333333333333333333 3 0000 555 0 3 22 99 1
lowQualScore : . ... ..... . .... . . ... ...... . .... ... . . . .. . ... . . . ... . .... . . ....... . .. ........ . ... .. . . ... . . . . . . . . . . . ........ . . . . ... . . . . . ..... .. . . . . .. . .............. ... . . .. ... .... ... . . . . . . ...... . . ... ................................ . .... ... . . .. .. .
lowQualScore : 5 000 77777 7 7777 7 0 000 888888 2 2222 888 0 0 0 88 5 555 0 0 4 000 0 9999 3 7 7777777 3 22 99999999 4 777 55 3 7 555 0 0 0 0 0 0 0 0 0 0 0 33333333 3 0 0 0 000 0 5 5 0 0 77777 00 5 0 0 2 88 5 44444444444444 777 7 3 00 333 3333 555 0 2 0 2 0 0 555555 0 5 888 55555555555555555555555555555555 2 0000 000 0 2 55 77 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---GTGTAACA--GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
Reference ( family-11 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---GTGTAAC---GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|1 : TGATCCGAACAATG----CACGG---G-TGTGATCGGTCAACAGGAG-ATGCTTA-TCCTCCTGGGCA-CCTAATCTC-A-C--TCAGGT----GTCACCAGGGG-CCATGC--TTGCTCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAG---CAATAGT-GCATTGTCA-TCTGCATATATAATTAATTTCACTCAACTGATTCATTACACTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTTTCATTTAAAATCAACATTTCGTAAATTCTATGGTCGTTATAAGAATTCTATTTGCAAATACA--ACCTTTCAATAGACTGCTCTTTATGTACCAAGTACGAATTATTTACA-TTACCTGATCAAGGAAAGGATCACTAGC-AGTGT---CCGGT-GATCAGGAG-ATGCTTACTCCTCC----TAGACACCTGTGTGACA--GGTCTGCA-GAG-GATGCTTAC-TCCTCCTAGACACCTGTATGA---C-CGGTC-AGCA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACATCTGTGT--GACCTCCTAGACACCTGTGTGA---CCGGTC-AGCAG-AGGATG-CTTACTCCTTCTAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|11 : tccacacaataaattaaatactagactttACAGTCACGTTTAAAGACAGCATTTCGTAACTTTTATGGGCGTTATAATGGTTGAATTTGAGAGTA-A--G---TTCAACAGATTcgctgctccccatgttcatatttcaccctattgtctttagataatggtttactgaac
gi|14 : ca--A-CTTATTGAGAT-TGATCC-------TCGTTTGTTA-CTTTGCCTTTA--CAT-GATG----AATA-T-G-ATT
gi|15 : taggaTTAT-GAGAT-TGATCA-------TTGTTCACTACCTTCACCTTTTTCCATCGTAGA--TAATA-
gi|16 : AT-TGATCA-------CTGTGCGTTATCTTTGCC--TT--CAT-ATTGATCCAAAC-T-GCAT--TCATTCTGCAgaattg
gi|17 : --A-CTTCC-GAGAT-TGATCA-------CTG---------TTTGCCTTTT--CAT-TT--A--C-ATA-TCACATTA
gi|18 : TAT-GAGAT-TGATCAGTGATCACTGCTCGTTATCTTCATTTTTT--CAT-GTAGcttacgta
gi|19 : attaTTATT---TTTATTG----TTTAT-GAGAT-TGATTA-------CTATTTGTTATCTTTGCCTTTT--TAT-
gi|2 : TGTGTTTCATAGCA-ATTG---TTAAGCCG-TTTCCATGCAGTGATTAACTACAAATTGCTC-CATTTACCTGATCAAGACAATGGTCAC-GGCGGGTGTG-ACCGGT-AAACAGGGC-ATATTTACTCCTCC----TA
gi|2 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaaTGATCAAGACAATGG--TCACGGC-GGGTGTGACCGGTAAACAGG-GCATATTTACTCCTCCTATG-A-TCTGATCCC-A-CCTTCTGGC----GCGTCTAGGGT-CCGTGTGTTTGCCCAACATATTCATCTGTATTCTA---TTT-AGG--AACTTGC-GAGAT-TGATCA-------CTGTTCGTTATCTTTGCATTTA--CA---TAGA--TAAGA-T-tgatctgatcccaccttctggcgcgtctagggtccgtgtgtttgcccaacatattcatctgtattctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
gi|20 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttacc-CTTAT-GAGAT-TGATCA-------CTATTCTGCATCTTCACCTTTT--CAT-
gi|21 : TGT-GAGAT-TGATCA-------CCTTTCGTTATCTTCACCTTTT--CAT-
gi|22 : AGAT-TGATCA-------TTTTTCGTTATCTTTGCATTTA--CAta
gi|3 : GGTGTACACCGGTTAAACAGGGG-A-GCTT-CTC-TCCACAATAG------GTGTAAC---GGTAAACAGGGG-GATGCTTA--TCCT-C-AGATA--GGTGTAA---CACGGGTAAACAGGAGAG-ATGC-----TTACGTCCTT-C-AG----A-A----------------TAG--------GTGAAACCCGGTTAGACAG-GGG-TG--TTACTC--TCAAGACA
gi|3 : ataCAC-AATAGGTGTA-AC-GGT-AAACAGGGGGATGCTTA-TCCTC------AGATAG--GTGTAACACGGGTAAACAGGAGAGATGCTTACGTCCTTC-AGA-A--TAGGTGAAACC-CGGTTAGACA-G-G-G-GTG------TTAC-TC--T-CAAG----ACA----------A-----TAG------GTGTAA----CGGTT-G-CAGCGGGATG-CTTACTCCataggtgtaacggttgcagcgggatgcttactcc
gi|4 : ataggtgtacaccggttaaacaggggagcttctctcGACAATGGGCTCACGGCTGG-TGTGGCCAGTCGACAT-----TGCTTACTCCTCCTAAG-AACCTGATCCC-AAC--TCTGGT----GAGTCCAGTGGTCCTTGT--TTTTCCAAC-TTTT-GTTT-TATAATC---TAT-TTGGGA-CGTAT-GTGAT-TGATAG-------CTGTTCGTTATCTTTGCCTT
gi|6 : -A-CCTGATTCCGA-C--GCCGGCTGTTGTACCCAGTGG-TCCTGT--TTGCC-AAC--CTC-ATTT-TGGCATTCCATTG-TTG--A-CTTAT-GAGATCTGATCA-------TTGTGCGTTAACTTaataagacagatgttaact
gi|7 : ggcaA---C-TGGTCAAACA-GAG-GAATGCTTTGATTAC-TCCTCATTAGAACCACATA--TACATAACCT-C-AG-----TGTG-GA---CCGGTC-AACAG-AGAATGTCTTgcatt
gi|8 : gtaa-GAGAT-TAATCA-------CT--TCATTATCTTTTCCTTTT--CAT-GCA-C--CAATG---ACATTATTA-T----ATA---AATCAATATTATTGAAATGATTTTTTATAATA
gi|9 : AGAC-TGATCA-------CTGTTCGTTGTCTTTGCTTTTA--CAT--CATA--CAA-A-T-Gtag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACAAGCCATACATTACACAGGTCCTCCATAGCACCCTGATCCCAGACCTATTCCATGAGAGTTCGCCTTTCCCAGCAACTTATTTGTATTCTGCGTTGAAGAATTAGCGAGATTGATCGACTGT
Unaligned ( gi|10 ): GCCTCTCCTAAGCACACTCTCGATCCCACACTCGTGTGGATTGAGTCCAGTTTTTTCCAACTCTTGTTTTTACTATTACGTAT
Unaligned ( gi|12 ): TGTATGACCTATATATTAATATTGTATTCCATATAGGAGTTTCAAAATTGATCATTGTTCAATACTTTACATTTTCA
Unaligned ( gi|13 ): TTCTATTTTGGAACTTACGAATTTGTCACTGAATCGTTATACATTGCCTTATACATACATTATATAAATACATA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 222 22222 3333 111 111111 2222 1 11 111 1 1 111 1111 11111111 1 222 44444444 1 1 11111 11 1 1 3333333333333333 222 1 22 111 2222 111 1 1 1 1 222222 1 111 33333333333333333333333333333333 2222 111 1 11
lowQualScore : 2 555 11111 0 1111 6 1 111 444444 4 1111 555 1 0 1 33 2 333 0 5 1 444 8 0000 3 2 8888888 0 44 99999999 3 888 11 3 6 111 1 1 1 1 1 1 1 1 1 1 1 11111111 7 1 1 1 333 1 5 5 1 1 66666 77 2 0 0 3 55 2 8888888888888888 555 6 3 00 555 1111 777 0 3 0 3 0 0 777777 0 2 333 33333333333333333333333333333333 3 0000 555 0 3 22 99 1
lowQualScore : . ... ..... . .... . . ... ...... . .... ... . . . .. . ... . . . ... . .... . . ....... . .. ........ . ... .. . . ... . . . . . . . . . . . ........ . . . . ... . . . . . ..... .. . . . . .. . ................ ... . . .. ... .... ... . . . . . . ...... . . ... ................................ . .... ... . . .. .. .
lowQualScore : 5 000 77777 7 7777 7 0 000 888888 2 2222 888 0 0 0 88 5 555 0 0 4 000 0 9999 3 7 7777777 3 22 99999999 4 777 55 3 7 555 0 0 0 0 0 0 0 0 0 0 0 33333333 3 0 0 0 000 0 5 5 0 0 77777 00 5 0 0 2 88 5 4444444444444444 777 7 3 00 333 3333 555 0 2 0 2 0 0 555555 0 5 888 55555555555555555555555555555555 2 0000 000 0 2 55 77 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAACA--GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
Reference ( family-11 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAACA--GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|1 : TGATCCGAACAATG----CACGG---G-TGTGATCGGTCAACAGGAG-ATGCTTA-TCCTCCTGGGCA-CCTAATCTC-A-C--TCAGGT----GTCACCAGGGG-CCATGC--TTGCTCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAG---CAATAGT-GCATTGTCA-TCTGCATATATAATTAATTTCACTCAACTGATTCATTACACTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTTTCATTTAAAATCAACATTTCGTAAATTCTATGGTCGTTATAAGAATTCTATTTGCAAATACA--ACCTTTCAATAGACTGCTCTTTATGTACCAAGTACGAATTATTTACA-TTACCTGATCAAGGAAAGGATCACTAGC-AGTGT---CCGGT-GATCAGGAG-ATGCTTACTCCTCC----TAGACACCTG-TGTGACA--GGTCTGCA-GAG-GATGCTTAC-TCCTCCTAGACACCTGTATGA---C-CGGTC-AGCA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACATCTGTGT--GACCTCCTAGACACCTGTGTGA---CCGGTC-AGCAG-AGGATG-CTTACTCCTTCTAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|11 : tccacacaataaattaaatactagactttACAGTCACGTTTAAAGACAGCATTTCGTAACTTTTATGGGCGTTATAATGGTTGAATTTGAGAGTA-A--G---TTCAACAGATTcgctgctccccatgttcatatttcaccctattgtctttagataatggtttactgaac
gi|14 : ca--A-CTTATTGAGAT-TGATCC-------TCGTTTGTTA-CTTTGCCTTTA--CAT-GATG----AATA-T-G-ATT
gi|15 : taggaTTAT-GAGAT-TGATCA-------TTGTTCACTACCTTCACCTTTTTCCATCGTAGA--TAATA-
gi|16 : AT-TGATCA-------CTGTGCGTTATCTTTGCC--TT--CAT-ATTGATCCAAAC-T-GCAT--TCATTCTGCAgaattg
gi|17 : --A-CTTCC-GAGAT-TGATCA-------CTG---------TTTGCCTTTT--CAT-TT--A--C-ATA-TCACATTA
gi|18 : TAT-GAGAT-TGATCAGTGATCACTGCTCGTTATCTTCATTTTTT--CAT-GTAGcttacgta
gi|19 : attaTTATT---TTTATTG----TTTAT-GAGAT-TGATTA-------CTATTTGTTATCTTTGCCTTTT--TAT-
gi|2 : TGTGTTTCATAGCA-ATTG---TTAAGCCG-TTTCCATGCAGTGATTAACTACAAATTGCTC-CATTTACCTGATCAAGACAATGGTCAC-GGCGGGTGTG-ACCGGT-AAACAGGGC-ATATTTACTCCTCC----TA
gi|2 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaaTGATCAAGACAATGG--TCACGGC-GGGTGTGACCGGTAAACAGG-GCATATTTACTCCTCCTATG-A-TCTGATCCC-A-CCTTCTGGC----GCGTCTAGGGT-CCGTGTGTTTGCCCAACATATTCATCTGTATTCTA---TTT-AGG--AACTTGC-GAGAT-TGATCA-------CTGTTCGTTATCTTTGCATTTA--CA---TAGA--TAAGA-T-tgatctgatcccaccttctggcgcgtctagggtccgtgtgtttgcccaacatattcatctgtattctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
gi|20 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttacc-CTTAT-GAGAT-TGATCA-------CTATTCTGCATCTTCACCTTTT--CAT-
gi|21 : TGT-GAGAT-TGATCA-------CCTTTCGTTATCTTCACCTTTT--CAT-
gi|22 : AGAT-TGATCA-------TTTTTCGTTATCTTTGCATTTA--CAta
gi|3 : GGTGTACACCGGTTAAACAGGGG-A-GCTT-CTC-TCCACAATAG------G-TGTAAC---GGTAAACAGGGG-GATGCTTA--TCCT-C-AGATA--GGTGTAA---CACGGGTAAACAGGAGAG-ATGC-----TTACGTCCTT-C-AG----A-A----------------TAG--------GTGAAACCCGGTTAGACAG-GGG-TG--TTACTC--TCAAGACA
gi|3 : ataCAC-AATAGGTGTA-AC-GGT-AAACAGGGGGATGCTTA-TCCTC------AGATA---GGTGTAACACGGGTAAACAGGAGAGATGCTTACGTCCTTC-AGA-A--TAGGTGAAACC-CGGTTAGACA-G-G-G-GTG------TTAC-TC--T-CAAG----ACA----------A-----TAG------GTGTAA----CGGTT-G-CAGCGGGATG-CTTACTCCataggtgtaacggttgcagcgggatgcttactcc
gi|4 : ataggtgtacaccggttaaacaggggagcttctctcGACAATGGGCTCACGGCTGG-TGTGGCCAGTCGACAT-----TGCTTACTCCTCCTAAG-AACCTGATCCC-AAC--TCTGGT----GAGTCCAGTGGTCCTTGT--TTTTCCAAC-TTTT-GTTT-TATAATC---TAT-TTGGGA-CGTAT-GTGAT-TGATAG-------CTGTTCGTTATCTTTGCCTT
gi|6 : -A-CCTGATTCCGA-C--GCCGGCTGTTGTACCCAGTGG-TCCTGT--TTGCC-AAC--CTC-ATTT-TGGCATTCCATTG-TTG--A-CTTAT-GAGATCTGATCA-------TTGTGCGTTAACTTaataagacagatgttaact
gi|7 : ggcaA---C-TGGTCAAACA-GAG-GAATGCTTTGATTAC-TCCTCATTAGAACCACATA--TACATAACCT-C-AG-----TGTG-GA---CCGGTC-AACAG-AGAATGTCTTgcatt
gi|8 : gtaa-GAGAT-TAATCA-------CT--TCATTATCTTTTCCTTTT--CAT-GCA-C--CAATG---ACATTATTA-T----ATA---AATCAATATTATTGAAATGATTTTTTATAATA
gi|9 : AGAC-TGATCA-------CTGTTCGTTGTCTTTGCTTTTA--CAT--CATA--CAA-A-T-Gtag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACAAGCCATACATTACACAGGTCCTCCATAGCACCCTGATCCCAGACCTATTCCATGAGAGTTCGCCTTTCCCAGCAACTTATTTGTATTCTGCGTTGAAGAATTAGCGAGATTGATCGACTGT
Unaligned ( gi|10 ): GCCTCTCCTAAGCACACTCTCGATCCCACACTCGTGTGGATTGAGTCCAGTTTTTTCCAACTCTTGTTTTTACTATTACGTAT
Unaligned ( gi|12 ): TGTATGACCTATATATTAATATTGTATTCCATATAGGAGTTTCAAAATTGATCATTGTTCAATACTTTACATTTTCA
Unaligned ( gi|13 ): TTCTATTTTGGAACTTACGAATTTGTCACTGAATCGTTATACATTGCCTTATACATACATTATATAAATACATA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 222 22222 3333 111 111111 2222 1 11 111 1 1 111 1111 11111111 1 222 44444444 1 1 11111 11 1 1 3333333333333333 222 1 22 111 2222 111 1 1 1 1 222222 1 111 33333333333333333333333333333333 2222 111 1 11
lowQualScore : 2 555 11111 0 1111 6 1 111 444444 4 1111 555 1 0 1 33 2 333 0 5 1 444 8 0000 3 2 8888888 0 44 99999999 3 888 11 3 6 111 1 1 1 1 1 1 1 1 1 1 1 11111111 7 1 1 1 333 1 5 5 1 1 66666 77 2 0 0 3 55 2 8888888888888888 555 6 3 00 555 1111 777 0 3 0 3 0 0 777777 0 2 333 33333333333333333333333333333333 3 0000 555 0 3 22 99 1
lowQualScore : . ... ..... . .... . . ... ...... . .... ... . . . .. . ... . . . ... . .... . . ....... . .. ........ . ... .. . . ... . . . . . . . . . . . ........ . . . . ... . . . . . ..... .. . . . . .. . ................ ... . . .. ... .... ... . . . . . . ...... . . ... ................................ . .... ... . . .. .. .
lowQualScore : 5 000 77777 7 7777 7 0 000 888888 2 2222 888 0 0 0 88 5 555 0 0 4 000 0 9999 3 7 7777777 3 22 99999999 4 777 55 3 7 555 0 0 0 0 0 0 0 0 0 0 0 33333333 3 0 0 0 000 0 5 5 0 0 77777 00 5 0 0 2 88 5 4444444444444444 777 7 3 00 333 3333 555 0 2 0 2 0 0 555555 0 5 888 55555555555555555555555555555555 2 0000 000 0 2 55 77 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAACA--GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
Reference ( family-11 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAACA--GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|1 : TGATCCGAACAATG----CACGG---G-TGTGATCGGTCAACAGGAG-ATGCTTA-TCCTCCTGGGCA-CCTAATCTC-A-C--TCAGGT----GTCACCAGGGG-CCATGC--TTGCTCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAG---CAATAGT-GCATTGTCA-TCTGCATATATAATTAATTTCACTCAACTGATTCATTACACTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTTTCATTTAAAATCAACATTTCGTAAATTCTATGGTCGTTATAAGAATTCTATTTGCAAATACA--ACCTTTCAATAGACTGCTCTTTATGTACCAAGTACGAATTATTTACA-TTACCTGATCAAGGAAAGGATCACTAGC-AGTGT---CCGGT-GATCAGGAG-ATGCTTACTCCTCC----TAGACACCTG-TGTGACA--GGTCTGCA-GAG-GATGCTTAC-TCCTCCTAGACACCTGTATGA---C-CGGTC-AGCA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACATCTGTGT--GACCTCCTAGACACCTGTGTGA---CCGGTC-AGCAG-AGGATG-CTTACTCCTTCTAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|11 : tccacacaataaattaaatactagactttACAGTCACGTTTAAAGACAGCATTTCGTAACTTTTATGGGCGTTATAATGGTTGAATTTGAGAGTA-A--G---TTCAACAGATTcgctgctccccatgttcatatttcaccctattgtctttagataatggtttactgaac
gi|14 : ca--A-CTTATTGAGAT-TGATCC-------TCGTTTGTTA-CTTTGCCTTTA--CAT-GATG----AATA-T-G-ATT
gi|15 : taggaTTAT-GAGAT-TGATCA-------TTGTTCACTACCTTCACCTTTTTCCATCGTAGA--TAATA-
gi|16 : AT-TGATCA-------CTGTGCGTTATCTTTGCC--TT--CAT-ATTGATCCAAAC-T-GCAT--TCATTCTGCAgaattg
gi|17 : --A-CTTCC-GAGAT-TGATCA-------CTG---------TTTGCCTTTT--CAT-TT--A--C-ATA-TCACATTA
gi|18 : TAT-GAGAT-TGATCAGTGATCACTGCTCGTTATCTTCATTTTTT--CAT-GTAGcttacgta
gi|19 : attaTTATT---TTTATTG----TTTAT-GAGAT-TGATTA-------CTATTTGTTATCTTTGCCTTTT--TAT-
gi|2 : TGTGTTTCATAGCA-ATTG---TTAAGCCG-TTTCCATGCAGTGATTAACTACAAATTGCTC-CATTTACCTGATCAAGACAATGGTCAC-GGCGGGTGTG-ACCGGT-AAACAGGGC-ATATTTACTCCTCC----TA
gi|2 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaaTGATCAAGACAATGG--TCACGGC-GGGTGTGACCGGTAAACAGG-GCATATTTACTCCTCCTATG-A-TCTGATCCC-A-CCTTCTGGC----GCGTCTAGGGT-CCGTGTGTTTGCCCAACATATTCATCTGTATTCTA---TTT-AGG--AACTTGC-GAGAT-TGATCA-------CTGTTCGTTATCTTTGCATTTA--CA---TAGA--TAAGA-T-tgatctgatcccaccttctggcgcgtctagggtccgtgtgtttgcccaacatattcatctgtattctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
gi|20 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttacc-CTTAT-GAGAT-TGATCA-------CTATTCTGCATCTTCACCTTTT--CAT-
gi|21 : TGT-GAGAT-TGATCA-------CCTTTCGTTATCTTCACCTTTT--CAT-
gi|22 : AGAT-TGATCA-------TTTTTCGTTATCTTTGCATTTA--CAta
gi|3 : GGTGTACACCGGTTAAACAGGGG-A-GCTT-CTC-TCCACAATAG------G-TGTAAC---GGTAAACAGGGG-GATGCTTA--TCCT-C-AGATA--GGTGTAA---CACGGGTAAACAGGAGAG-ATGC-----TTACGTCCTT-C-AG----A-A----------------TAG--------GTGAAACCCGGTTAGACAG-GGG-TG--TTACTC--TCAAGACA
gi|3 : ataCAC-AATAGGTGTA-AC-GGT-AAACAGGGGGATGCTTA-TCCTC------AGATA---GGTGTAACACGGGTAAACAGGAGAGATGCTTACGTCCTTC-AGA-A--TAGGTGAAACC-CGGTTAGACA-G-G-G-GTG------TTAC-TC--T-CAAG----ACA----------A-----TAG------GTGTAA----CGGTT-G-CAGCGGGATG-CTTACTCCataggtgtaacggttgcagcgggatgcttactcc
gi|4 : ataggtgtacaccggttaaacaggggagcttctctcGACAATGGGCTCACGGCTGG-TGTGGCCAGTCGACAT-----TGCTTACTCCTCCTAAG-AACCTGATCCC-AAC--TCTGGT----GAGTCCAGTGGTCCTTGT--TTTTCCAAC-TTTT-GTTT-TATAATC---TAT-TTGGGA-CGTAT-GTGAT-TGATAG-------CTGTTCGTTATCTTTGCCTT
gi|6 : -A-CCTGATTCCGA-C--GCCGGCTGTTGTACCCAGTGG-TCCTGT--TTGCC-AAC--CTC-ATTT-TGGCATTCCATTG-TTG--A-CTTAT-GAGATCTGATCA-------TTGTGCGTTAACTTaataagacagatgttaact
gi|7 : ggcaA---C-TGGTCAAACA-GAG-GAATGCTTTGATTAC-TCCTCATTAGAACCACATA--TACATAACCT-C-AG-----TGTG-GA---CCGGTC-AACAG-AGAATGTCTTgcatt
gi|8 : gtaa-GAGAT-TAATCA-------CT--TCATTATCTTTTCCTTTT--CAT-GCA-C--CAATG---ACATTATTA-T----ATA---AATCAATATTATTGAAATGATTTTTTATAATA
gi|9 : AGAC-TGATCA-------CTGTTCGTTGTCTTTGCTTTTA--CAT--CATA--CAA-A-T-Gtag
blockSeqs : A GGC CGGG GGC C T AA ACCT T TGTT CGT G T G GT C ATA C G T CCA A GGA T C GTGATCA TC ATTGATC T TC TA T C . A G A T A A A C G T G ATTG A T A G GTG C . T C T GGCG AC C T G T AC C CACAATAGG ACG G A CG TC TA AAC A A G A A A CTTTGA G C ATT AACCACATATACATAACCTCAGT T AACC AGA C A TC . A
blockSeqs : G CTGG . C A A AAC T . AGT T . T . C TT . . T . . AA . . . . CGTAGA T T TA . . T AG . AATA G C . . T C C AGATAGG . G . . C A . . A . A . . C . C CA ACAATAG T C AA . A C
blockSeqs : A GAC C . TAC T . C . . C . . A . . A . . . . GATG A T . A . . . . A . . . A . . . . . . . C AATAG . . G . . .
blockSeqs : C . . A . . . . TAGA T T
blockSeqs : A . . . . GCAC G T
blockSeqs : . . . . . CATA T .
blockSeqs : . . . . TTA .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : T**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAACA--GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATAT--GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAACA--GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACAAGCCATACATTACACAGGTCCTCCATAGCACCCTGATCCCAGACCTATTCCATGAGAGTTCGCCTTTCCCAGCAACTTATTTGTATTCTGCGTTGAAGAATTAGCGAGATTGATCGACTGT
Unaligned ( gi|10 ): GCCTCTCCTAAGCACACTCTCGATCCCACACTCGTGTGGATTGAGTCCAGTTTTTTCCAACTCTTGTTTTTACTATTACGTAT
Unaligned ( gi|12 ): TGTATGACCTATATATTAATATTGTATTCCATATAGGAGTTTCAAAATTGATCATTGTTCAATACTTTACATTTTCA
Unaligned ( gi|13 ): TTCTATTTTGGAACTTACGAATTTGTCACTGAATCGTTATACATTGCCTTATACATACATTATATAAATACATA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 222 22222 3333 111 111111 2222 1 11 111 1 1 111 1111 11111111 1 222 44444444 1 1 11111 11 1 1 3333333333333333 222 1 22 111 2222 111 1 1 1 1 222222 1 111 33333333333333333333333333333333 2222 111 1 11
lowQualScore : 2 555 11111 0 1111 6 1 111 444444 4 1111 555 1 0 1 33 2 333 0 5 1 444 8 0000 3 2 8888888 0 44 99999999 3 888 11 3 6 111 1 1 1 1 1 1 1 1 1 1 1 11111111 7 1 1 1 333 1 5 5 1 1 66666 77 2 0 0 3 55 2 8888888888888888 555 6 3 00 555 1111 777 0 3 0 3 0 0 777777 0 2 333 33333333333333333333333333333333 3 0000 555 0 3 22 99 1
lowQualScore : . ... ..... . .... . . ... ...... . .... ... . . . .. . ... . . . ... . .... . . ....... . .. ........ . ... .. . . ... . . . . . . . . . . . ........ . . . . ... . . . . . ..... .. . . . . .. . ................ ... . . .. ... .... ... . . . . . . ...... . . ... ................................ . .... ... . . .. .. .
lowQualScore : 5 000 77777 7 7777 7 0 000 888888 2 2222 888 0 0 0 88 5 555 0 0 4 000 0 9999 3 7 7777777 3 22 99999999 4 777 55 3 7 555 0 0 0 0 0 0 0 0 0 0 0 33333333 3 0 0 0 000 0 5 5 0 0 77777 00 5 0 0 2 88 5 4444444444444444 777 7 3 00 333 3333 555 0 2 0 2 0 0 555555 0 5 888 55555555555555555555555555555555 2 0000 000 0 2 55 77 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAACA--GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
Reference ( family-11 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCGGACAATGG--TCACGGC-GG-TGTGACCGGTCGACAGG-G-ATGCTTACTCCTCCTANG-A-CCTGATCCC-A-C--TCCGGC----GCGTCCAGNGG-CCNTGT--TTGCCCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAGA--CAATA-T-GCATTATCA-TCTGCATATATAATCAATNTCACTNAANTGATTCNTTACANTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTCNCGTTTAAAGNCAGCATTTCGTAANTTCTATGGNCGTTATAANGGTTGTATTTGANAGTA-A--G---TTCAACAGATTNCCNTNCANNNACCAANTACGAATTGCTCACATTTACCTGATCAAGGNAANGGTCAC-GGCGGGTGTA-ACCGGT-AAACAGGGG-ATGCTTACTCCTCC----TAGACA---G-TGTAACA--GGTAAACAGGAG-GATGCTTAC-TCCTCC-AGACA--TGTGTGA---C-CGGTCAAACA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACAT---TGC--GACCT-CTAG-----TGTGTGA---CCGGTC-GACAG-GGGATG-CTTACTCCTTCNAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|1 : TGATCCGAACAATG----CACGG---G-TGTGATCGGTCAACAGGAG-ATGCTTA-TCCTCCTGGGCA-CCTAATCTC-A-C--TCAGGT----GTCACCAGGGG-CCATGC--TTGCTCAAC-TCTT-GTTTGTATCATT---TTT-TTG--A-CTTAT-GAGAT-TGATCA-------CTGTTCGTTATCTTCGCCTTTT--CAT-GTAG---CAATAGT-GCATTGTCA-TCTGCATATATAATTAATTTCACTCAACTGATTCATTACACTAAGATATGTTCAGAGTATGACATATTTCTAAACCAAGGCAAGTTATTCTCAAATAAAATATTATGGGGTTTCTACAGTTTCATTTAAAATCAACATTTCGTAAATTCTATGGTCGTTATAAGAATTCTATTTGCAAATACA--ACCTTTCAATAGACTGCTCTTTATGTACCAAGTACGAATTATTTACA-TTACCTGATCAAGGAAAGGATCACTAGC-AGTGT---CCGGT-GATCAGGAG-ATGCTTACTCCTCC----TAGACACCTG-TGTGACA--GGTCTGCA-GAG-GATGCTTAC-TCCTCCTAGACACCTGTATGA---C-CGGTC-AGCA-GAG-G-ATGC-----TTAC-TCCTC-CTAG----ACATCTGTGT--GACCTCCTAGACACCTGTGTGA---CCGGTC-AGCAG-AGGATG-CTTACTCCTTCTAGACACCTGTTATTATATCTGGTGTTGTCGGGGGGTCCGTGTTTGCCCTATTCTTTTGTAT
gi|11 : tccacacaataaattaaatactagactttACAGTCACGTTTAAAGACAGCATTTCGTAACTTTTATGGGCGTTATAATGGTTGAATTTGAGAGTA-A--G---TTCAACAGATTcgctgctccccatgttcatatttcaccctattgtctttagataatggtttactgaac
gi|14 : ca--A-CTTATTGAGAT-TGATCC-------TCGTTTGTTA-CTTTGCCTTTA--CAT-GATG----AATA-T-G-ATT
gi|15 : taggaTTAT-GAGAT-TGATCA-------TTGTTCACTACCTTCACCTTTTTCCATCGTAGA--TAATA-
gi|16 : AT-TGATCA-------CTGTGCGTTATCTTTGCC--TT--CAT-ATTGATCCAAAC-T-GCAT--TCATTCTGCAgaattg
gi|17 : --A-CTTCC-GAGAT-TGATCA-------CTG---------TTTGCCTTTT--CAT-TT--A--C-ATA-TCACATTA
gi|18 : TAT-GAGAT-TGATCAGTGATCACTGCTCGTTATCTTCATTTTTT--CAT-GTAGcttacgta
gi|19 : attaTTATT---TTTATTG----TTTAT-GAGAT-TGATTA-------CTATTTGTTATCTTTGCCTTTT--TAT-
gi|2 : TGTGTTTCATAGCA-ATTG---TTAAGCCG-TTTCCATGCAGTGATTAACTACAAATTGCTC-CATTTACCTGATCAAGACAATGGTCAC-GGCGGGTGTG-ACCGGT-AAACAGGGC-ATATTTACTCCTCC----TA
gi|2 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaaTGATCAAGACAATGG--TCACGGC-GGGTGTGACCGGTAAACAGG-GCATATTTACTCCTCCTATG-A-TCTGATCCC-A-CCTTCTGGC----GCGTCTAGGGT-CCGTGTGTTTGCCCAACATATTCATCTGTATTCTA---TTT-AGG--AACTTGC-GAGAT-TGATCA-------CTGTTCGTTATCTTTGCATTTA--CA---TAGA--TAAGA-T-tgatctgatcccaccttctggcgcgtctagggtccgtgtgtttgcccaacatattcatctgtattctatttaggaacttgcgagattgatcactgttcgttatctttgcatttacatagataagat
gi|20 : gttgatgtaacgatcataatagcttgaatcttttttaaacgtcagtaattatataattcactcttaagtgttccattcaataactttagtttggaatttgaccttgcataggataaaatgccttgccaatgtgtttcatagcaattgttaagccgtttccatgcagtgattaactacaaattgctccatttacc-CTTAT-GAGAT-TGATCA-------CTATTCTGCATCTTCACCTTTT--CAT-
gi|21 : TGT-GAGAT-TGATCA-------CCTTTCGTTATCTTCACCTTTT--CAT-
gi|22 : AGAT-TGATCA-------TTTTTCGTTATCTTTGCATTTA--CAta
gi|3 : GGTGTACACCGGTTAAACAGGGG-A-GCTT-CTC-TCCACAATAG------G-TGTAAC---GGTAAACAGGGG-GATGCTTA--TCCT-C-AGATA--GGTGTAA---CACGGGTAAACAGGAGAG-ATGC-----TTACGTCCTT-C-AG----A-A----------------TAG--------GTGAAACCCGGTTAGACAG-GGG-TG--TTACTC--TCAAGACA
gi|3 : ataCAC-AATAGGTGTA-AC-GGT-AAACAGGGGGATGCTTA-TCCTC------AGATA---GGTGTAACACGGGTAAACAGGAGAGATGCTTACGTCCTTC-AGA-A--TAGGTGAAACC-CGGTTAGACA-G-G-G-GTG------TTAC-TC--T-CAAG----ACA----------A-----TAG------GTGTAA----CGGTT-G-CAGCGGGATG-CTTACTCCataggtgtaacggttgcagcgggatgcttactcc
gi|4 : ataggtgtacaccggttaaacaggggagcttctctcGACAATGGGCTCACGGCTGG-TGTGGCCAGTCGACAT-----TGCTTACTCCTCCTAAG-AACCTGATCCC-AAC--TCTGGT----GAGTCCAGTGGTCCTTGT--TTTTCCAAC-TTTT-GTTT-TATAATC---TAT-TTGGGA-CGTAT-GTGAT-TGATAG-------CTGTTCGTTATCTTTGCCTT
gi|6 : -A-CCTGATTCCGA-C--GCCGGCTGTTGTACCCAGTGG-TCCTGT--TTGCC-AAC--CTC-ATTT-TGGCATTCCATTG-TTG--A-CTTAT-GAGATCTGATCA-------TTGTGCGTTAACTTaataagacagatgttaact
gi|7 : ggcaA---C-TGGTCAAACA-GAG-GAATGCTTTGATTAC-TCCTCATTAGAACCACATA--TACATAACCT-C-AG-----TGTG-GA---CCGGTC-AACAG-AGAATGTCTTgcatt
gi|8 : gtaa-GAGAT-TAATCA-------CT--TCATTATCTTTTCCTTTT--CAT-GCA-C--CAATG---ACATTATTA-T----ATA---AATCAATATTATTGAAATGATTTTTTATAATA
gi|9 : AGAC-TGATCA-------CTGTTCGTTGTCTTTGCTTTTA--CAT--CATA--CAA-A-T-Gtag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACAAGCCATACATTACACAGGTCCTCCATAGCACCCTGATCCCAGACCTATTCCATGAGAGTTCGCCTTTCCCAGCAACTTATTTGTATTCTGCGTTGAAGAATTAGCGAGATTGATCGACTGT
Unaligned ( gi|10 ): GCCTCTCCTAAGCACACTCTCGATCCCACACTCGTGTGGATTGAGTCCAGTTTTTTCCAACTCTTGTTTTTACTATTACGTAT
Unaligned ( gi|12 ): TGTATGACCTATATATTAATATTGTATTCCATATAGGAGTTTCAAAATTGATCATTGTTCAATACTTTACATTTTCA
Unaligned ( gi|13 ): TTCTATTTTGGAACTTACGAATTTGTCACTGAATCGTTATACATTGCCTTATACATACATTATATAAATACATA