lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 111 1111 1 11111 11111111 1111111111 4444444444444444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222222 3333 1 11 2
lowQualScore : 77 6 77 444 1 3333 5 44444 4 4 55555555 1 55 1111111111 44 3 3 8888888888888888888888 33 1 55555 5555555 1 2 1111 555 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 66 0 4 222222222 0 6 2222 0 33 0 0
lowQualScore : .. . .. ... . .... . ..... . . ........ . .. .......... .. . . ...................... .. . ..... ....... . . .... ... . ........................................................................................................... . . .. . . ......... . . .... . .. . .
lowQualScore : 55 0 77 000 4 1111 0 88888 4 4 77777777 7 55 7777777777 22 1 1 0000000000000000000000 99 7 55555 2222222 3 4 8888 444 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 99 2 9 999999999 7 6 5555 0 88 7 0
consensus : TATAGGTTATTGACT---AATT-AT-TGG-AAATATN---CC-CGC-CC---GA-G-GTCGTTGCGC--GGNA-AAGCGGATCG--A-GCT-TGGTG-----A-G-TC---CN-CTTCC--GCGCAACG---A--CCG-AGGGCGGGCA----TATT---T-CC---N-AT--AT----T----CA-A--T-N--------A-----T----TAC------A-A-T-T--TN-TT--CANATT--------T---------T-A-------TGCAC-TTC-TA--ATTCTNGAA----G-CGCACATTCGTT---TACA-TT--TTAAATGGCAGACAA
Reference ( gi|5 ) : TATA--TCATTACCT---AATT-AT-TGG-AAATATT---TC-CGC-CT---GA-G-GTCGTTGCGC--GGAA-AAGCGGGTTG--A-GCT-TGGTG-----A-G-TC---CT-TTTCC--GCGCAACG---A--TCG-AGGACGGGCA----TATT---T-CT---T-AT--AT----T----CA-A--T-G--------A-----T----TAC------A-A-T-T--TA-TT--CATATT--------T---------C-A-------TGCAC-TTC-TA--ATTCTAGAA----A-CATACATTCTTG---TACA-TT--TCAAATA-CAGACAA
gi|1 : TATAGGTTATTGCCTGAAAATC-A---GG-AACTATG---CC-TGC-CC---GA-G-GTCGTTCCGT--GGTA-CTGTATATTG--A-GCT-TA--------------------CTTCA--GCACAAAG---A--CTG-GGGGTGGACAT---TGTT---T-CCCGAT-ATTCAT----T----CA-A--T-G--------ACTTTTT----TTT------T-A-T-TGATACTT--CAAATT--------T---------T-A-------TACACTTTC-TA--ATTCTAGCA----G-CACAAATTCGTT---TTCA-CT--TTTAGTAGCAGATAA
gi|8 : --TTATTGACT---GAAT-ATATGG-AAATAATATACC-CAT-CT---AA-----TGTTGGGC--GGCA-AAGTGGACCA--A-ACTCTTGTG-----TTG-TC---CT-CCTCT--GTG--A-G---A--T-----GACAATCAA---TATC---T-CT---T----------------------T----------A-----T----TAC------A-AAT-T--TA-T---CAAATT--------C---------A-A-------TGCAC-TTC-TA--ATTCTAGAA----AGCAAACATTTCTGAATTACATTT--TCAGAAG-CAGACagtgtttacattcattattattcggaaacagatgcgacaccataatcaaaattatgtgtgaaatcataatta
gi|14 : taggTTAACT---AATTTAT-CGGGAAATATA---CA-CGT-CC---GA-G-GTCGTTGGAT--AGCA-AAACGTACAG--A-GTT-T-GTG-----AGG-TC---TG-CTTTC--GTGTAACG---A--CCG-AGTGCGGGCA----T
gi|4 : CT---AAAT-ATCTGG-AACTATG---CC-CGC-TC---GA-G-GTCGTTACGC--GGTG-AAGCTGACCG--A-CCT-T-ACA-----A-G-GT---TT-GTTGCGGGCGAAACA---A--CCG-AAGGAGGGTA----CATT---T-CC---CAAT--AT----T----
gi|7 : ctgtgaaagaaacatataattatataattacaattctgtaaaatatcggcttctgttgtcatatgaataacatttatagaatataga---AATT--T-TAGTAAAAATG---AC-CGT-TC---AA-G-GTGGTTGCGC--GGAA---GCAGACTT--C-GCA-CATCC-----A-G-TCTAACC-TTACC--GCGCAACAACCA--TCG-AAGA---GCATAATTATT---T-CC---A-AT--AT----T----CA-T--T-C--------A-----------GC------A-A-C-T--TA-T----ACATT--------T---------C-
gi|7 : T-AT-TGG-AAATAAT---TA-TGCTCTTC-GATG-GTTGTTGCGC--GGTA-A----GGTTA--G-ACT-GGATGTGCGAA-G-TC---TG-CTTCC--GCGCAACC---A--CCT-TGAACGGTCA----TTTT---TACT---A-AA--AT----T----CA-GTTT-GT-------A-----C----TGC--------C-T-T--TT-TTACCACAAT--------T---------CTA-------TGTAC-CCC-TATCATTCT-GAA----A-CGCACGTcagtttgtactgccttttttaccacaattctatgtacccctatcattctgaaacgcacgt
gi|4 : gaaatgtataagttgctgaatgaaT-AT-TGGGAAATGTA---CC-CTC-CT---TC-G-GTTGTTTCGCCCGCAACAAACC--TTGTAA-GGT-CGGTC-----A-G------CT-TCACC--GCGTAACG---ACCTCG-AG--CGGGCA----TAGT---T-CCA--G-AT--AT----T----TA-G--TCT--------A-----TATTCTATA-----A-A-TGT--TA-TT--CATAT
gi|9 : ctgtgaaagaaacatataattatataattacaattctgtaaaatatcggcttctgttgtc-AAATATT---TCACCC-CTCCAAA-GAGTTGTTTCCT--GTAA-A-----GTTG--ACATT-TTGTG-----ATG-TC---TG-CTTCC--GTGAAGCA---A--CTG-AGAGCACACA----TATT---T-CT---TGAT--AT----T----CT-A--T-T--------A-----T----TACTTTTTTT-A-T-T--TG-TTA-CATATT--------TTCAAAATTCT-A-------TGCAC-TTC-TA--ATTCTTGAA----tt
gi|6 : T---TC-CGC-TT---GA----TT-TTGTAC--GATA-AAGCGGTTTG--A-GCT-TTACG-----AGG-TC---TG-CTTCC--GAGCAATG---A--CCATAGGATGACCA----T-TT---T-CC---A-AT--ACTCCGT----CA-A--T-AAGCTTTATA-----T----TGC------ATA-T-T--TT-TC--CA-ATC--------C---------T-A-------TGAAT-TTC-TG--TTTTTTGAAGAGCA-CATA-ATTCCT----TACA-TTCGTTAAATgttt
gi|11 : cGTTGCGT--GTTA-AAGCGGACTA--A-GCT-TGCTT-------G-TT---TTACTTCT--GCTCAATG---A--TCG-AGGGCAGGCA----CATT---T-CC---CAAT--AT----T----TAGA--T-A--------A-----T----AAC------C-T-T-T--TA-TTA-CATATTTTCAAATCT---------T-A-------TACAC-TTG-TT--ATTGTTGAA----G-C--ACATTggcgaaaacctaaacaaata
gi|2 : A-AACCAGATCG--A-GCT-TG-TG-----A-GGTC---CA-CTTCA--GCGCATTG---A--CTG-AGGGCGGCCA----TATT---T-CT---CGAC--AT----TCAGCCA-A--T-A--------AACTGTC----TAA------AGA-T-T--TCTTT--CAAATT--------C---------T-A-------TTCAC-TCCTTA--ATTTT-GAG----G-TGCACATTTTt
gi|3 : gtgattGGATGG--A-GTT-TG-TA-----A-GATC---CT-TATCT--GCATAATG---G--CAG-AGGGCAAACA-----ATT---C-CT---A-AT--AT----T----AA-G--T-C--------A-----G----TA---------A-C-C--TT-TC--CATATT--------TTG-------C-AAGTTCTTTACAC-TTC-TA--GTTGTGGAG----G-GGCACATTTGTT---TATA-TT--Tcagtagcaaaggatttatatcacattatatctattataattgtttaaacatgtgacgtcacgttcatatactcatgtgacatcacaact
gi|8 : tgtctgtgcaaggacattgcagggtacgtaatttG--A-GTT-TGGT----------CCA--CT-TTGCC--GCCCAAC----A--TTA---GATGGGTA----TATTATTT-CCA--T-AT--AT----T----CA-G--T-tcagtgataggtaaagtgttagctgcccattactatttgtaaa
gi|10 : taggttattgCC--ACCTAAAG---A--CCA-CGGGCGGTCA----TATT---T-CT---CGAT--AT----T----CA-A--T-ttgtgttgtcctcctctgtgagatgacaatcaatatctctttattacaaatttatcaaattcaatgcacttctaattctagaaagcaaacatttctgaattacattttcagaagcagac
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TCAAATTCTGTACACTTATAATTCGAGAAGCGCGCACTCATTTACATAGTTAGTATCAGACAAATGTGGTTATGTCTATGATCTGACAGCACCATGATCGAGTTATAGGCGCAAATGTGACGTCATAATTAAGTTGA
Unaligned ( gi|13 ): AGGGCAAGCACATTTCTCAATATTCAGTCAAAAAACTTATTATTCTACATGTACATGTATTTCTAACTTTAGAAGTACACATTTCTCTGCATTTTCAGGAGCAAAGTTTA
Unaligned ( gi|15 ): CTGTGAATAAAAGGTATATGATATGGTTAAAAAATTGCCCTAATGTCTTTATGATAGTAAAATTTTATAT
Unaligned ( gi|16 ): AGCTTGGTTTACTTTAACTGATAACTGCTTAGAGCGGACACATTTCTCGACATTCAGTCAATTAACT
Alignments
lowQualScore : 111 1 2222222222 3333333333333 1111111 111 66666666666666666666666666666666666666666666666666666666666 22222222222222222222 11111
lowQualScore : 22 000 5 5 1 5 5 2222222222 1 4 4 1 555 3 5 0 3 7777777777777 11 44 0 0 3 0000000 6666 555 1 7777 7777 44444444444444444444444444444444444444444444444444444444444 77 3 88 22222222222222222222 3 3 55 2 4 3 0 777 33333 77 7 1 6
lowQualScore : .. ... . . . . . .......... . . . . ... . . . . ............. .. .. . . . ....... .... ... . .... .... ........................................................... .. . .. .................... . . .. . . . . ... ..... .. . . .
lowQualScore : 00 000 9 7 4 7 0 0000000000 4 4 4 0 888 3 8 2 3 3333333333333 11 66 8 2 1 2222222 9999 444 0 1111 1111 44444444444444444444444444444444444444444444444444444444444 99 6 22 55555555555555555555 6 6 00 0 5 6 7 000 33333 99 7 0 3
consensus : TATAGGTTATTGACT---GANT-AT-CG-G-AAATA----TG----CCCGCCCGA-G-GTCGTTGCGCGGTA---AAGC-GGATCGAGCT-T-GCG-----A-G-TCCGCTTCC--GCGCAACGACCG-AGGGCGG------GCA-TA-TTT-C-CGATAT----T----CAG-----------T--------NA------TTAC------A-A--TTT-----------TTT--C-A-AATTC---------TA---------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATT--TTNAGTAGCAGACAA
Reference ( family-1088 ) : TATAGGTTATTGACT---AATT-AT-TG-G-AAATA----TN----CCCGCCCGA-G-GTCGTTGCGCGGNA---AAGC-GGATCGAGCT-TGGTG-----A-G-TCCNCTTCC--GCGCAACGACCG-AGGGCGG------GCA-TA-TTT-C-CNATAT----T----CAA-----------T--------NA------TTAC------A-A--TTT-----------NTT--C-A-NATTT---------TA---------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATT--TTAAATGGCAGACAA
gi|1 : TATAGGTTATTGCCTGAAAATC-A---G-G-AACTA----TG----CCTGCCCGA-G-GTCGTTCCGTGGTA---CTGT-ATATTGAGCT-T----------------ACTTCA--GCACAAAGACTG-GGGGTGG------ACATTG-TTTCC-CGATAT----T----CAT-----------TC-------AA------TGAC------T-T--TTTTTTTATTGATACTT--C-A-AATTT---------TA---------TACACTTTC-TA--ATTCTAG-CAGCACAA---ATTCGT---TTTCACT--TTTAGTAGCAGATAA
gi|10 : TATGGTTTATTGATT---GAAT-AT-CGAG-AAATA----TG----ACCGCCCGT-G-GTCTTTAGGTGGCT---CATT-GAATCAAACT-T-TCG-----AGG-TCCACAAAC--ACACTTAGACCA-AGGGTGGTATACAGTG-TAGTTT-C-CAGTAT----T----CAG-----------T--------CA--------AT------A-A--TTT-----------TTT--agtgtttacattcattattattcggaaacagatgcgacaccataatcaaaattatgtgtgaaatcataatta
gi|11 : GTTGCGTGTTA---AAGC-GGACTAAGCT-TGCTT-----G-T-TTTACTTCT--GCTCAATGATCG-AGGGCAG------GCA-CA-TTTCC-CAATAT----T----TAGATAATAACCTTT--------TA------TTAC--------A--TAT-----------TTT--C-A-AATCT---------TA---------TACAC-TTG-TT--ATTGTTG-AA--GCAC---ATTt
gi|12 : T--C-A-AATTC---------TG---------TACAC-TTA-TA--ATTCGAG-AAGCGCGC---ACTCAT---TTACATA--GTTAGTATCAGACAAt
gi|13 : -AGGGCAA------GCA-CA-TTT-CTCAATAT----T----CAG-----------T--------CAAAAAACTTA-------------TT-----------ATT--CTA-CATGTA--------CA---------TGTAT-TTC-TA--ACTTTAG-AAGTACAC---ATTTCT---CTGCATT--TTatgtggttatgtctatgatctgacagcaccatgatcgagttataggcgcaaatgtgacgtcataattaagttga
gi|14 : TTAACT---AATTTAT-CG-GGAAATA----TA----CACGTCCGA-G-GTCGTTGGATAGCA---AAAC-GTACAGAGTT-T-GTG-----AGG-TCTGCTTTC--GTGTAACGACCG-AGTGCGG------GCA-Tcaggagcaaagttta
gi|2 : A---AACC-AGATCGAGCT-T-GTG-----AGG-TCCACTTCA--GCGCATTGACTG-AGGGCGG------CCA-TA-TTT-CTCGACAT----TCAGCCAA-----------T--------AAACTGT-CTAA------AGA--TTTC----------TTT--C-A-AATTC---------TA---------TTCAC-TCCTTA--ATT-TTG-AGGTGCAC---ATT
gi|3 : gtgattCAA-G-GACATTGCAGGGTACGTAATTTGGATGGAGTT-TG-TA-----A-GATCCTTATCT--GCATAATGGCAG-AGGGCAA------ACA--A-TTC-C-TAATAT----T----AAG-----------T--------CA------GTA---------A--CCT-----------TTC--C-A-TATTT---------TGCAAGTTCTTTACAC-TTC-TA--GTTGTGG-AGGGGCAC---ATTTGT---TTATATT--TTCAGTGATAGGTAAttcagtagcaaaggatttatatcacattatatctattataattgtttaaacatgtgacgtcacgttcatatactcatgtgacatcacaact
gi|4 : tgtctgtgTATAGAATATAGACT---AAAT-ATCTG-G-AACTA----TG----CCCGCTCGA-G-GTCGTTACGCGGTG---AAGC-TGACCGACCT-T-ACA-----A-G-GTTTGTTGCGGGCGAAACAACCG-AAGGAGG------GTA-CA-TTTCC-CAATAT----T----agtgttagctgcccattactatttgtaaa
gi|5 : ctgtgaaagaaacatataattatataattacaattctgtaaaatatcggcttctgttgtcatatgaataacattTATA--TCATTACCT---AATT-AT-TG-G-AAATA----TT----TCCGCCTGA-G-GTCGTTGCGCGGAA---AAGC-GGGTTGAGCT-TGGTG-----A-G-TCCTTTTCC--GCGCAACGATCG-AGGACGG------GCA-TA-TTT-C-TTATAT----T----CAA-----------T--------GA------TTAC------A-A--TTT-----------ATT--C-A-TATTT---------CA---------TGCAC-TTC-TA--ATTCTAG-AAACATAC---ATTCTT---GTACATT--TCAAAT-ACAGACAA
gi|6 : TTGTACGATA---AAGC-GGTTTGAGCT-TTACG-----A-GGTCTGCTTCC--GAGCAATGACCATAGGATGA------CCA-T--TTT-C-CAATACTCCGT----CAA-----------TAAGCTTTATA------TTGC------ATA--TTT-----------TTC--C-A--ATCC---------TA---------TGAAT-TTC-TG--TTTTTTG-AAGAGCACATAATTC-C---TTACATTCGTTAAATGGC
gi|7 : cttccgcttgattTATAAGTTGCTGAAT---GAAT-AT-TG-G-AAATAATTATG----CTC-TTCGATG-GTTGTTGCGCGGTA---A----GGTTAGA-CT-GGATGTGCGAA-G-TCTGCTTCC--GCGCAACCACCT-TGAACGG------TCA-TT-TTTAC-TAAAAT----T----CAG-----------T--------TT------GTAC------T-GCCTTT-----------TTTACC-ACAATTC---------TA---------TGTAC-CCC-TATCATTCT-G-AAACGCAC---GTgaaaacctaaacaaata
gi|8 : gaaatgTAGGTTATTGACT---GAAT-ATATG-G-AAATAATA-TA----CCCATCTAA-----TGTTGGGCGGCA---AAGT-GGACCAAACTCTTGTG-----TTG-TCCTCCTCT--GTGAGATGAC------------------A--A-T-----CAATAT----C----TCT-----------T--------TA------TTAC------A-A--ATT-----------TAT--C-A-AATTC---------AA---------TGCAC-TTC-TA--ATTCTAGAAAGCAAAC---ATTTCTGAATTACATT--TTCAGAAGCAGAC
gi|9 : -AAATA----TTTCACCCCTCCAAA-GAGTTGTTTC-CTGTA---AAGT-TGAC---ATT-TTGTG-----ATG-TCTGCTTCC--GTGAAGCAACTG-AGAGCAC------ACA-TA-TTT-CTTGATAT----T----CTA-----------T--------TA------TTACTTTTTTT-A--TTT-----------GTTA-C-A-TATTTTCAAAATTCTA---------TGCAC-TTC-TA--ATTCTTG-AAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTGTGAATAAAAGGTATATGATATGGTTAAAAAATTGCCCTAATGTCTTTATGATAGTAAAATTTTATAT
Unaligned ( gi|16 ): AGCTTGGTTTACTTTAACTGATAACTGCTTAGAGCGGACACATTTCTCGACATTCAGTCAATTAACT
Alignments
lowQualScore : 111 1 1111 222 1111111 111111 777777777777777777777777777777777777777777777777 22222222222 11111111 11111
lowQualScore : 1 5 1 5 111 0 4 5555 777 4 55 0 555 6 3 44 3 3 222 555 33 0 0 3 0000000 6666 333333 7777 000000000000000000000000000000000000000000000000 3 00000000000 3 3 33333333 3 3 55 2 4 3 0 777 55555 66 1 1
lowQualScore : . . . . ... . . .... ... . .. . ... . . .. . . ... ... .. . . . ....... .... ...... .... ................................................ . ........... . . ........ . . .. . . . . ... ..... .. . .
lowQualScore : 0 0 0 0 000 0 4 5555 000 0 55 2 444 2 8 22 3 3 111 888 66 8 2 1 2222222 9999 555555 1111 222222222222222222222222222222222222222222222222 6 44444444444 6 6 22222222 6 6 00 0 5 6 7 000 44444 99 0 4
consensus : TATAGGTTA-TTGACTGAAT-AT-C-G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGACCGAGCT--T-G-CGA-G-TCC-GCTTC-CGCGCAACGACCG-AGGGCGG------GCAT-A-TTT-C-C-GATATT----CAG-----------TCA-------TTAC-------A----------A--T-TT-TTT-----------C-A-AATTCT--------ATGCACTT-C-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATT--TTCAGTAGCAGACAA
Reference ( family-1088 ) : TATAGGTTA-TTGACTGANT-AT-C-G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGATCGAGCT--T-G-CGA-G-TCC-GCTTC-CGCGCAACGACCG-AGGGCGG------GCAT-A-TTT-C-C-GATATT----CAG-----------TNA-------TTAC-------A----------A--T-TT-TTT-----------C-A-AATTCT--------ATGCACTT-C-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATT--TTNAGTAGCAGACAA
gi|1 : TATAGGTTA-TTGCCTGAAA-AT-CAG-G-AACTA----T---GCCTGCCCGA-GG--TCGTTCCGTGGTA---CTGT-ATATTGAGCT--T-A-C-----------TTC-AGCACAAAGACTG-GGGGTGG------ACATTG-TTT-C-CCGATATT----CAT-----------TCAA------TGAC-------T----------T--T-TT-TTTTATTGATACTTC-A-AATTTT--------ATACACTTTC-TA--ATTCTAG-CAGCACAA---ATTCGT---TTTCACT--TTTAGTAGCAGATAA
gi|10 : TATGGTTTA-TTGATTGAAT-AT-C-GAG-AAATA----T---GACCGCCCGT-GG--TCTTTAGGTGGCT---CATT-GAATCAAACT--T-T-CGAGG-TCC-ACAAA-CACACTTAGACCA-AGGGTGGTATACAGTGT-AGTTT-C-C-AGTATT----CAG-----------TCA---------AT-------A----------A--T-TT-TTT-----------agtgtttacattcattattattcggaaacagatgcgacaccataatcaaaattatgtgtgaaatcataatta
gi|11 : GTTGCGTGTTA---AAGC-GGACTAAGCT--T-G-CTT-G-TTTTACTTC-TGCTCAATGATCG-AGGGCAG------GCAC-A-TTTCC-C-AATATT----TAGATAATAACCTTTTA-------TTAC------------------A--T-AT-TTT-----------C-A-AATCTT--------ATACACTT-G-TT--ATTGTTG-AA--GCAC---ATTt
gi|12 : T-----------C-A-AATTCT--------GTACACTT-A-TA--ATTCGAG-AAGCGCGC---ACTCAT---TTACATA--GTTAGTATCAGACAAt
gi|13 : -AGGGCAA------GCAC-A-TTT-CTC-AATATT----CAG-----------TCA--------AAA-------A----------A--C-TT-ATT----------------ATTCTACATGTACATGTATTT-C-TA--ACTTTAG-AAGTACAC---ATTTCT---CTGCATT--TTCAGGAGCAAAatgtggttatgtctatgatctgacagcaccatgatcgagttataggcgcaaatgtgacgtcataattaagttga
gi|14 : -TTAACTAATTTAT-C-G-GGAAATA----T---ACACGTCCGA-GG--TCGTTGGATAGCA---AAAC-GTACAGAGTT--T-G-TGAGG-TCT-GCTTT-CGTGTAACGACCG-AGTGCGG------GCAT-gttta
gi|16 : GTTAATTGACTGAAT-GT-C-GAG-AAATG----T---GTCCGCTCTA-AG--CAGTTATCAGTTA---AAGT-AAACCAAGCT--
gi|2 : TA---AACC-AGATCGAGCT--T-G-TGA-GGTCC-ACTTC-AGCGCATTGACTG-AGGGCGG------CCAT-A-TTT-CTC-GACATT----CAG-----------CCA-------ATAA-------ACTGTCTAAAGA--T-TTCTTT-----------C-A-AATTCT--------ATTCACTC-CTTA--ATT-TTG-AGGTGC----------------ACATT--TTCAGTAGCAAAt
gi|3 : gtgat----T---GTCTGTGCAA-GG--ACATTGCAGGGTACGTAATTTGGATGGAGTT--T-G-TAA-GATCC-TTATC-TGCATAATGGCAG-AGGGCAA------ACA--A-TTC-C-T-AATATTAAGTCAG-----------TAACC-----TTTC-------C----------A--TATT-TTG-----------C-A-AGTTCT--------TTACACTT-C-TA--GTTGTGG-AGGGGCAC---ATTTGT---TTATATT--TTCAGTGATAGGTAAggatttatatcacattatatctattataattgtttaaacatgtgacgtcacgttcatatactcatgtgacatcacaact
gi|4 : TATAGAATA-TAGACTAAAT-AT-CTG-G-AACTA----T---GCCCGCTCGA-GG--TCGTTACGCGGTG---AAGC-TGACCGACCT--T-A-CAAGG-TTT-GTTGCGGGCGAAACAACCG-AAGGAGG------GTAC-A-TTTCC-C-AATATT----agtgttagctgcccattactatttgtaaa
gi|5 : ctgtgaaagaaacatataattatataattacaattctgtaaaatatcggcttctgttgtcatatgaataacattTATA--TCA-TTACCTAATT-AT-T-G-G-AAATA----T---TTCCGCCTGA-GG--TCGTTGCGCGGAA---AAGC-GGGTTGAGCT--T-GGTGA-G-TCC-TTTTC-CGCGCAACGATCG-AGGACGG------GCAT-A-TTT-C-T-TATATT----CAA-----------TGA-------TTAC-------A----------A--T-TT-ATT-----------C-A-TATTTC--------ATGCACTT-C-TA--ATTCTAG-AAACATAC---ATTCTT---GTACATT--TCAAATA-CAGACAA
gi|6 : TTGTACGATA---AAGC-GGTTTGAGCT--TTA-CGA-GGTCT-GCTTC-CGAGCAATGACCATAGGATGA------CCAT---TTT-C-C-AATACT----CCG-----------TCAATAAGCTTTAT-------ATTGC------A--TATT-TTT-----------C-C-AATCCT--------ATGAATTT-C-TG--TTTTTTG-AAGAGCACATAATTC-C---TTACATTCGTTAAATGG
gi|7 : cttccgcttgattTATAAGTTG-CTGAATGAAT-AT-T-G-G-AAATAATTAT---GCTC-TTCGATGG--TTGTTGCGCGGTA---AGGTTAGACTGGATG--T-G-CGAAG-TCT-GCTTC-CGCGCAACCACCT-TGAACGG------TCAT-T-TTTAC-T-AAAATT----CAG-----------TTT-------GTAC-------T----------GCCT-TT-TTTAC---------C-ACAATTCT--------ATGTACCC-C-TATCATTCT-G-AAACGCAC---GTgaaaacctaaacaaata
gi|8 : gaaatgTAGGTTA-TTGACTGAAT-ATAT-G-G-AAATAATA-T---ACCCATCTAA------TGTTGGGCGGCA---AAGT-GGACCAAACTCTT-G-TGTTG-TCC-TCCTC-TGTGAGATGAC------------------A--A-T-----C-AATATC----TCT-----------TTA-------TTAC-------A----------A--A-TT-TAT-----------C-A-AATTCA--------ATGCACTT-C-TA--ATTCTAGAAAGCAAAC---ATTTCTGAATTACATT--TTCAGAAGCAGAC
gi|9 : -AAATA----TTTCACCCCTCCAA-AGAGTTGTTTC-CTGTA---AAGT-TGAC--ATTT--T-G-TGATG-TCT-GCTTC-CGTGAAGCAACTG-AGAGCAC------ACAT-A-TTT-CTT-GATATT----CTA-----------TTA-------TTACTTTTTTTATTTGTTAC--A--T-AT-TTT-----------CAA-AATTCT--------ATGCACTT-C-TA--ATTCTTG-AAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTGTGAATAAAAGGTATATGATATGGTTAAAAAATTGCCCTAATGTCTTTATGATAGTAAAATTTTATAT
Alignments
lowQualScore : 111 1 1111 222 1111111 111 7777777777777777777777777777777777777777777777777777777777777777777777 11111111 11111
lowQualScore : 1 5 0 66 111 0 4 5555 777 4 55 0 555 6 3 44 5555 222 555 33 0 0 3 0000000 6666 555 2 5555555555555555555555555555555555555555555555555555555555555555555555 44 3 3 33333333 3 3 55 2 4 3 0 777 55555 3
lowQualScore : . . . .. ... . . .... ... . .. . ... . . .. .... ... ... .. . . . ....... .... ... . ...................................................................... .. . . ........ . . .. . . . . ... ..... .
lowQualScore : 0 0 2 99 000 0 4 5555 000 0 55 2 444 2 8 22 7777 111 000 66 8 2 1 2222222 9999 444 8 9999999999999999999999999999999999999999999999999999999999999999999999 66 6 6 22222222 6 6 00 0 5 6 7 000 44444 0
consensus : TATAGGTTA-TTGACTGAAT--AT-C-G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGACCGAGCT--T-G-CGA-G-TCC-GCTTC-CGCGCAACGACCG-AGGGCGG------GCA-TA-TTT-C-CGATATTCAG-----------TC-A-------TTA------C-------A----------A--T-TT-T-----------TT--C-A-AATTCTA--------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATTTTCAGTAGCAGACAA
Reference ( family-1088 ) : TATAGGTTA-TTGACTGAAT--AT-C-G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGACCGAGCT--T-G-CGA-G-TCC-GCTTC-CGCGCAACGACCG-AGGGCGG------GCA-TA-TTT-C-CGATATTCAG-----------TC-A-------TTA------C-------A----------A--T-TT-T-----------TT--C-A-AATTCTA--------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATTTTCAGTAGCAGACAA
gi|1 : TATAGGTTA-TTGCCTGAAA--AT-CAG-G-AACTA----T---GCCTGCCCGA-GG--TCGTTCCGTGGTA---CTGT-ATATTGAGCT--T-------------ACTTC-AGCACAAAGACTG-GGGGTGG------ACATTG-TTTCC-CGATATTCAT-----------TCAA-------TGA------C-------T----------T--T-TT-TTTTATTGATACTT--C-A-AATTTTA--------TACACTTTC-TA--ATTCTAG-CAGCACAA---ATTCGT---TTTCACTTTTAGTAGCAGATAA
gi|10 : TATGGTTTA-TTGATTGAAT--AT-C-GAG-AAATA----T---GACCGCCCGT-GG--TCTTTAGGTGGCT---CATT-GAATCAAACT--T-T-CGAGG-TCC-ACAAA-CACACTTAGACCA-AGGGTGGTATACAGTG-TAGTTT-C-CAGTATTCAG-----------TC-A---------A------T-------A----------A--T-TT-T-----------TT--agtgtttacattcattattattcggaaacagatgcgacaccataatcaaaattatgtgtgaaatcataatta
gi|11 : GTTGCGTGTTA---AAGC-GGACTAAGCT--T-G-CTT-G-TTTTACTTC-TGCTCAATGATCG-AGGGCAG------GCA-CA-TTTCC-CAATATTTAGATAATAACCTTTT-A-------TTA------C------------------A--T-AT-T-----------TT--C-A-AATCTTA--------TACAC-TTG-TT--ATTGTTG-AA--GCAC---ATTt
gi|12 : T--C-A-AATTCTG--------TACAC-TTA-TA--ATTCGAG-AAGCGCGC---ACTCAT---TTACATAGTTAGTATCAGACAAt
gi|13 : -AGGGCAA------GCA-CA-TTT-CTCAATATTCAG-----------TC-A-------A-A------A-------A----------A--C-TT-A-----------TT-------ATTCTACATGTACATGTAT-TTC-TA--ACTTTAG-AAGTACAC---ATTTCT---CTGCATTTTCAGGAGCAAAatgtggttatgtctatgatctgacagcaccatgatcgagttataggcgcaaatgtgacgtcataattaagttga
gi|14 : -TTAACT-AATTTAT-C-G-GGAAATA----T---ACACGTCCGA-GG--TCGTTGGATAGCA---AAAC-GTACAGAGTT--T-G-TGAGG-TCT-GCTTT-CGTGTAACGACCG-AGTGCGG------GCA-Tgttta
gi|16 : GTTAATTGACTGAAT--GT-C-GAG-AAATG----T---GTCCGCTCTA-AG--CAGTTATCAGTTA---AAGT-AAACCAAGCT--
gi|2 : TA---AACC-AGATCGAGCT--T-G-TGA-GGTCC-ACTTC-AGCGCATTGACTG-AGGGCGG------CCA-TA-TTT-CTCGACATTCAG-----------CC-A-------ATA------A-------ACTGTCTAAAGA--T-TTCT-----------TT--C-A-AATTCTA--------TTCAC-TCCTTA--ATT-TTG-AGGTGC----------------ACATTTTCAGTAGCAAAt
gi|3 : gtgat----T---GTCTGTGCAA-GG--ACATTGCAGGGTACGTAATTTGGATGGAGTT--T-G-TAA-GATCC-TTATC-TGCATAATGGCAG-AGGGCAA------ACA--A-TTC-C-TAATATTAAG-----------TC-A-------GTAACCTTTC-------C----------A--TATT-T-----------TG--C-A-AGTTCTT--------TACAC-TTC-TA--GTTGTGG-AGGGGCAC---ATTTGT---TTATATTTTCAGTGATAGGTAAggatttatatcacattatatctattataattgtttaaacatgtgacgtcacgttcatatactcatgtgacatcacaact
gi|4 : TATAGAATA-TAGACTAAAT--AT-CTG-G-AACTA----T---GCCCGCTCGA-GG--TCGTTACGCGGTG---AAGC-TGACCGACCT--T-A-CAAGG-TTT-GTTGCGGGCGAAACAACCG-AAGGAGG------GTA-CA-TTTCC-CAATATTagtgttagctgcccattactatttgtaaa
gi|5 : ctgtgaaagaaacatataattatataattacaattctgtaaaatatcggcttctgttgtcatatgaataacattTATA--TCA-TTACCTAATT--AT-T-G-G-AAATA----T---TTCCGCCTGA-GG--TCGTTGCGCGGAA---AAGC-GGGTTGAGCT--T-GGTGA-G-TCC-TTTTC-CGCGCAACGATCG-AGGACGG------GCA-TA-TTT-C-TTATATTCAA-----------TG-A-------TTA------C-------A----------A--T-TT-A-----------TT--C-A-TATTTCA--------TGCAC-TTC-TA--ATTCTAG-AAACATAC---ATTCTT---GTACATTTCAAATA-CAGACAA
gi|6 : TTGTACGATA---AAGC-GGTTTGAGCT--TTA-CGA-GGTCT-GCTTC-CGAGCAATGACCATAGGATGA------CCA-T--TTT-C-CAATACTCCG-----------TC-AATAAGCTTTA------T-------ATTGC------A--TATT-T-----------TT--C-C-AATCCTA--------TGAAT-TTC-TG--TTTTTTG-AAGAGCACATAATTC-C---TTACATT
gi|7 : cttccgcttgattTATAAGTTG-CTGAATGAAT--AT-T-G-G-AAATAATTAT---GCTC-TTCGATGG--TTGTTGCGCGGTA---AGGTTAGACTGGATG--T-G-CGAAG-TCT-GCTTC-CGCGCAACCACCT-TGAACGG------TCA-TT-TTTAC-TAAAATTCAG-----------TT-T-------GTA------C-------T----------GCCT-TT-T-----------TTACC-ACAATTCTA--------TGTAC-CCC-TATCATTCT-G-AAACGCAC---GTcgttaaatggcgaaaacctaaacaaata
gi|8 : gaaatgTAGGTTA-TTGACTGAAT--ATAT-G-G-AAATAATA-T---ACCCATCTAA------TGTTGGGCGGCA---AAGT-GGACCAAACTCTT-G-TGTTG-TCC-TCCTC-TGTGAGATGAC------------------A--A-T-----CAATATCTCT-----------TT-A-------TTA------C-------A----------A--A-TT-T-----------AT--C-A-AATTCAA--------TGCAC-TTC-TA--ATTCTAGAAAGCAAAC---ATTTCTGAATTACATTTTCAGAAGCAGAC
gi|9 : -AAATA----TTTCACCCCTCCAA-AGAGTTGTTTC-CTGTA---AAGT-TGAC--ATTT--T-G-TGATG-TCT-GCTTC-CGTGAAGCAACTG-AGAGCAC------ACA-TA-TTT-CTTGATATTCTA-----------TT-A-------TTA------CTTTTTTTATTTGTTAC--A--T-AT-T-----------TT--CAA-AATTCTA--------TGCAC-TTC-TA--ATTCTTG-AAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTGTGAATAAAAGGTATATGATATGGTTAAAAAATTGCCCTAATGTCTTTATGATAGTAAAATTTTATAT
Alignments
lowQualScore : 111 1 1111 222 1111111 111 7777777777777777777777777777777777777777777777777777777777777777777777 11111111 11111
lowQualScore : 1 5 0 66 111 0 4 5555 777 4 55 0 555 6 3 44 5555 222 555 33 0 0 3 0000000 6666 555 2 5555555555555555555555555555555555555555555555555555555555555555555555 44 3 3 33333333 3 3 55 2 4 3 0 777 55555 3
lowQualScore : . . . .. ... . . .... ... . .. . ... . . .. .... ... ... .. . . . ....... .... ... . ...................................................................... .. . . ........ . . .. . . . . ... ..... .
lowQualScore : 0 0 2 99 000 0 4 5555 000 0 55 2 444 2 8 22 7777 111 000 66 8 2 1 2222222 9999 444 8 9999999999999999999999999999999999999999999999999999999999999999999999 66 6 6 22222222 6 6 00 0 5 6 7 000 44444 0
consensus : TATAGGTTA-TTGACTGAAT--AT-C-G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGACCGAGCT--T-G-CGA-G-TCC-GCTTC-CGCGCAACGACCG-AGGGCGG------GCA-TA-TTT-C-CGATATTCAG-----------TC-A-------TTA------C-------A----------A--T-TT-T-----------TT--C-A-AATTCTA--------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATTTTCAGTAGCAGACAA
Reference ( family-1088 ) : TATAGGTTA-TTGACTGAAT--AT-C-G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGACCGAGCT--T-G-CGA-G-TCC-GCTTC-CGCGCAACGACCG-AGGGCGG------GCA-TA-TTT-C-CGATATTCAG-----------TC-A-------TTA------C-------A----------A--T-TT-T-----------TT--C-A-AATTCTA--------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATTTTCAGTAGCAGACAA
gi|1 : TATAGGTTA-TTGCCTGAAA--AT-CAG-G-AACTA----T---GCCTGCCCGA-GG--TCGTTCCGTGGTA---CTGT-ATATTGAGCT--T-------------ACTTC-AGCACAAAGACTG-GGGGTGG------ACATTG-TTTCC-CGATATTCAT-----------TCAA-------TGA------C-------T----------T--T-TT-TTTTATTGATACTT--C-A-AATTTTA--------TACACTTTC-TA--ATTCTAG-CAGCACAA---ATTCGT---TTTCACTTTTAGTAGCAGATAA
gi|10 : TATGGTTTA-TTGATTGAAT--AT-C-GAG-AAATA----T---GACCGCCCGT-GG--TCTTTAGGTGGCT---CATT-GAATCAAACT--T-T-CGAGG-TCC-ACAAA-CACACTTAGACCA-AGGGTGGTATACAGTG-TAGTTT-C-CAGTATTCAG-----------TC-A---------A------T-------A----------A--T-TT-T-----------TT--agtgtttacattcattattattcggaaacagatgcgacaccataatcaaaattatgtgtgaaatcataatta
gi|11 : GTTGCGTGTTA---AAGC-GGACTAAGCT--T-G-CTT-G-TTTTACTTC-TGCTCAATGATCG-AGGGCAG------GCA-CA-TTTCC-CAATATTTAGATAATAACCTTTT-A-------TTA------C------------------A--T-AT-T-----------TT--C-A-AATCTTA--------TACAC-TTG-TT--ATTGTTG-AA--GCAC---ATTt
gi|12 : T--C-A-AATTCTG--------TACAC-TTA-TA--ATTCGAG-AAGCGCGC---ACTCAT---TTACATAGTTAGTATCAGACAAt
gi|13 : -AGGGCAA------GCA-CA-TTT-CTCAATATTCAG-----------TC-A-------A-A------A-------A----------A--C-TT-A-----------TT-------ATTCTACATGTACATGTAT-TTC-TA--ACTTTAG-AAGTACAC---ATTTCT---CTGCATTTTCAGGAGCAAAatgtggttatgtctatgatctgacagcaccatgatcgagttataggcgcaaatgtgacgtcataattaagttga
gi|14 : -TTAACT-AATTTAT-C-G-GGAAATA----T---ACACGTCCGA-GG--TCGTTGGATAGCA---AAAC-GTACAGAGTT--T-G-TGAGG-TCT-GCTTT-CGTGTAACGACCG-AGTGCGG------GCA-Tgttta
gi|16 : GTTAATTGACTGAAT--GT-C-GAG-AAATG----T---GTCCGCTCTA-AG--CAGTTATCAGTTA---AAGT-AAACCAAGCT--
gi|2 : TA---AACC-AGATCGAGCT--T-G-TGA-GGTCC-ACTTC-AGCGCATTGACTG-AGGGCGG------CCA-TA-TTT-CTCGACATTCAG-----------CC-A-------ATA------A-------ACTGTCTAAAGA--T-TTCT-----------TT--C-A-AATTCTA--------TTCAC-TCCTTA--ATT-TTG-AGGTGC----------------ACATTTTCAGTAGCAAAt
gi|3 : gtgat----T---GTCTGTGCAA-GG--ACATTGCAGGGTACGTAATTTGGATGGAGTT--T-G-TAA-GATCC-TTATC-TGCATAATGGCAG-AGGGCAA------ACA--A-TTC-C-TAATATTAAG-----------TC-A-------GTAACCTTTC-------C----------A--TATT-T-----------TG--C-A-AGTTCTT--------TACAC-TTC-TA--GTTGTGG-AGGGGCAC---ATTTGT---TTATATTTTCAGTGATAGGTAAggatttatatcacattatatctattataattgtttaaacatgtgacgtcacgttcatatactcatgtgacatcacaact
gi|4 : TATAGAATA-TAGACTAAAT--AT-CTG-G-AACTA----T---GCCCGCTCGA-GG--TCGTTACGCGGTG---AAGC-TGACCGACCT--T-A-CAAGG-TTT-GTTGCGGGCGAAACAACCG-AAGGAGG------GTA-CA-TTTCC-CAATATTagtgttagctgcccattactatttgtaaa
gi|5 : ctgtgaaagaaacatataattatataattacaattctgtaaaatatcggcttctgttgtcatatgaataacattTATA--TCA-TTACCTAATT--AT-T-G-G-AAATA----T---TTCCGCCTGA-GG--TCGTTGCGCGGAA---AAGC-GGGTTGAGCT--T-GGTGA-G-TCC-TTTTC-CGCGCAACGATCG-AGGACGG------GCA-TA-TTT-C-TTATATTCAA-----------TG-A-------TTA------C-------A----------A--T-TT-A-----------TT--C-A-TATTTCA--------TGCAC-TTC-TA--ATTCTAG-AAACATAC---ATTCTT---GTACATTTCAAATA-CAGACAA
gi|6 : TTGTACGATA---AAGC-GGTTTGAGCT--TTA-CGA-GGTCT-GCTTC-CGAGCAATGACCATAGGATGA------CCA-T--TTT-C-CAATACTCCG-----------TC-AATAAGCTTTA------T-------ATTGC------A--TATT-T-----------TT--C-C-AATCCTA--------TGAAT-TTC-TG--TTTTTTG-AAGAGCACATAATTC-C---TTACATT
gi|7 : cttccgcttgattTATAAGTTG-CTGAATGAAT--AT-T-G-G-AAATAATTAT---GCTC-TTCGATGG--TTGTTGCGCGGTA---AGGTTAGACTGGATG--T-G-CGAAG-TCT-GCTTC-CGCGCAACCACCT-TGAACGG------TCA-TT-TTTAC-TAAAATTCAG-----------TT-T-------GTA------C-------T----------GCCT-TT-T-----------TTACC-ACAATTCTA--------TGTAC-CCC-TATCATTCT-G-AAACGCAC---GTcgttaaatggcgaaaacctaaacaaata
gi|8 : gaaatgTAGGTTA-TTGACTGAAT--ATAT-G-G-AAATAATA-T---ACCCATCTAA------TGTTGGGCGGCA---AAGT-GGACCAAACTCTT-G-TGTTG-TCC-TCCTC-TGTGAGATGAC------------------A--A-T-----CAATATCTCT-----------TT-A-------TTA------C-------A----------A--A-TT-T-----------AT--C-A-AATTCAA--------TGCAC-TTC-TA--ATTCTAGAAAGCAAAC---ATTTCTGAATTACATTTTCAGAAGCAGAC
gi|9 : -AAATA----TTTCACCCCTCCAA-AGAGTTGTTTC-CTGTA---AAGT-TGAC--ATTT--T-G-TGATG-TCT-GCTTC-CGTGAAGCAACTG-AGAGCAC------ACA-TA-TTT-CTTGATATTCTA-----------TT-A-------TTA------CTTTTTTTATTTGTTAC--A--T-AT-T-----------TT--CAA-AATTCTA--------TGCAC-TTC-TA--ATTCTTG-AAG
blockSeqs : G A TT CT A G ATTA TTC T AG CGT T C CT GGT GG TTA GG T TATACAG TAG CC A TTATTACTTTTTTTATTTGTTACATATT AC A C CATGTACA . T TC G T A ATA CTGAA T
blockSeqs : G . . AT A . ATA . . . . T T . TAC GG CA C . G CA CT A TCAATAAGCTTTATATTGCATATTT . . . . . . . C A . . AT G
blockSeqs : A . . C . . . . . . . . A . TC GG TG T . G CA CT A CCAATAAACTGTCTAAAGATTTCT . . . . . . . T A . . CT G
blockSeqs : G . . C . . . . . . . . C . GC GA CA C . G TA CC G ATAATAACCTTTTATTACATATT . . . . . . . G T . . GT A
blockSeqs : . . . C . . . . . . . . C . GT GG CT A . C CA AC A TCAGTAACCTTTCCATATTT . . . . . . . C G . . TT G
blockSeqs : . . T . . . . . . . . G . GT GG TG T . A TA CT A TTTGTACTGCCTTTT . . . . . . . T A . . C .
blockSeqs : . . T . . . . . . . . C . GT AG CT C . G TT C T TGATTACAATTTA . . . . . . . C T . . .
blockSeqs : . . . . . . . T . AC TG TG C . G TA C A TTATTACAAATTT . . . . . . . C A . .
blockSeqs : . . . . . . T . GC TG TG C . C A C A TCAAAAAACTTA . . . . . . . C T . .
blockSeqs : . . T . GT G CT T . T T C A TCAATAATTTT . . . . . . . . . .
blockSeqs : . . C . GT G TG C . A A . G .
blockSeqs : . . . . . .
blockSeqCons : C** GC** GG* CG* CA**
originalCons : TATAGGTTA-TTGACTGAAT--AT-C-G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGACCGAGCT--T-G-CGA-G-TCC-GCTTC-CGCGCAACGACCG-AGGGCGG------GCA-TA-TTT-C-CGATATTCAG-----------TC-A-------TTA------C-------A----------A--T-TT-T-----------TT--C-A-AATTCTA--------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATTTTCAGTAGCAGACAA
finalCons : TATAGGTTA-TTGACTGAAT--ATC--G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGACCGAGCT--TGC--GAGG-TCCG-CTTC-CGCGCAACGACCG-AGGGCGG------GCACA--TTT-C-CGATATTCAG-----------TC-A-------TTA------C-------A----------A--T-TT-T-----------TT--C-A-AATTCTA--------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATTTTCAGTAGCAGACAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTGTGAATAAAAGGTATATGATATGGTTAAAAAATTGCCCTAATGTCTTTATGATAGTAAAATTTTATAT
Alignments
lowQualScore : 111 1 1111 111111111 111 7777777777777777777777777777777777777777777777777777777777777777777777 11111111 11111
lowQualScore : 1 5 0 66 111 0 4 5555 777 4 55 0 555 6 3 44 5555 11 33 0 0 3 55 777777777 555 2 5555555555555555555555555555555555555555555555555555555555555555555555 44 3 3 33333333 3 3 55 2 4 3 0 777 55555 3
lowQualScore : . . . .. ... . . .... ... . .. . ... . . .. .... .. .. . . . .. ......... ... . ...................................................................... .. . . ........ . . .. . . . . ... ..... .
lowQualScore : 0 0 2 99 000 0 4 5555 000 0 55 2 444 2 8 22 7777 77 66 8 2 1 77 555555555 444 8 9999999999999999999999999999999999999999999999999999999999999999999999 66 6 6 22222222 6 6 00 0 5 6 7 000 44444 0
consensus : TATAGGTTA-TTGACTGAAT--AT-C-G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGACCGAGCT--T-G-CGAGGTCCGCTTC-CGCGCAACGACCG-AGGGCGG-GCA-TA------TTT-C-CGATATTCAG-----------TC-A-------TTA------C-------A----------A--T-TT-T-----------TT--C-A-AATTCTA--------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATTTTCAGTAGCAGACAA
Reference ( family-1088 ) : TATAGGTTA-TTGACTGAAT--AT-C-G-G-AAATA----T---GCCCGCCCGA-GG--TCGTTGCGCGGTA---AAGC-GGACCGAGCT--T-G-CGAGGTCCGCTTC-CGCGCAACGACCG-AGGGCGG-GCA-CA------TTT-C-CGATATTCAG-----------TC-A-------TTA------C-------A----------A--T-TT-T-----------TT--C-A-AATTCTA--------TGCAC-TTC-TA--ATTCTNG-AAGCGCAC---ATTCGT---TTACATTTTCAGTAGCAGACAA
gi|1 : TATAGGTTA-TTGCCTGAAA--AT-CAG-G-AACTA----T---GCCTGCCCGA-GG--TCGTTCCGTGGTA---CTGT-ATATTGAGCT--T-----------ACTTC-AGCACAAAGACTG-GGGGTGG-ACATTG------TTTCC-CGATATTCAT-----------TCAA-------TGA------C-------T----------T--T-TT-TTTTATTGATACTT--C-A-AATTTTA--------TACACTTTC-TA--ATTCTAG-CAGCACAA---ATTCGT---TTTCACTTTTAGTAGCAGATAA
gi|10 : TATGGTTTA-TTGATTGAAT--AT-C-GAG-AAATA----T---GACCGCCCGT-GG--TCTTTAGGTGGCT---CATT-GAATCAAACT--T-T-CGAGGTCCACAAA-CACACTTAGACCA-AGGGTGGTATA-CAGTGTAGTTT-C-CAGTATTCAG-----------TC-A---------A------T-------A----------A--T-TT-T-----------TT--agtgtttacattcattattattcggaaacagatgcgacaccataatcaaaattatgtgtgaaatcataatta
gi|11 : GTTGCGTGTTA---AAGC-GGACTAAGCT--T-G-CTTGTTTTACTTC-TGCTCAATGATCG-AGGGCAG-GCA-CA------TTTCC-CAATATTTAGATAATAACCTTTT-A-------TTA------C------------------A--T-AT-T-----------TT--C-A-AATCTTA--------TACAC-TTG-TT--ATTGTTG-AA--GCAC---ATTt
gi|12 : T--C-A-AATTCTG--------TACAC-TTA-TA--ATTCGAG-AAGCGCGC---ACTCAT---TTACATAGTTAGTATCAGACAAt
gi|13 : -AGGGCAA-GCA-CA------TTT-CTCAATATTCAG-----------TC-A-------A-A------A-------A----------A--C-TT-A-----------TT-------ATTCTACATGTACATGTAT-TTC-TA--ACTTTAG-AAGTACAC---ATTTCT---CTGCATTTTCAGGAGCAAAatgtggttatgtctatgatctgacagcaccatgatcgagttataggcgcaaatgtgacgtcataattaagttga
gi|14 : -TTAACT-AATTTAT-C-G-GGAAATA----T---ACACGTCCGA-GG--TCGTTGGATAGCA---AAAC-GTACAGAGTT--T-G-TGAGGTCTGCTTT-CGTGTAACGACCG-AGTGCGG-GCA-gttta
gi|16 : GTTAATTGACTGAAT--GT-C-GAG-AAATG----T---GTCCGCTCTA-AG--CAGTTATCAGTTA---AAGT-AAACCAAGCT--t
gi|2 : TA---AACC-AGATCGAGCT--T-G-TGAGGTCCACTTC-AGCGCATTGACTG-AGGGCGG-CCA-TA------TTT-CTCGACATTCAG-----------CC-A-------ATA------A-------ACTGTCTAAAGA--T-TTCT-----------TT--C-A-AATTCTA--------TTCAC-TCCTTA--ATT-TTG-AGGTGC----------------ACATTTTCAGTAGCAAAt
gi|3 : gtgat----T---GTCTGTGCAA-GG--ACATTGCAGGGTACGTAATTTGGATGGAGTT--T-G-TAAGATCCTTATC-TGCATAATGGCAG-AGGGCAA-ACA--A------TTC-C-TAATATTAAG-----------TC-A-------GTAACCTTTC-------C----------A--TATT-T-----------TG--C-A-AGTTCTT--------TACAC-TTC-TA--GTTGTGG-AGGGGCAC---ATTTGT---TTATATTTTCAGTGATAGGTAAggatttatatcacattatatctattataattgtttaaacatgtgacgtcacgttcatatactcatgtgacatcacaact
gi|4 : TATAGAATA-TAGACTAAAT--AT-CTG-G-AACTA----T---GCCCGCTCGA-GG--TCGTTACGCGGTG---AAGC-TGACCGACCT--T-A-CAAGGTTTGTTGCGGGCGAAACAACCG-AAGGAGG-GTA-CA------TTTCC-CAATATTagtgttagctgcccattactatttgtaaa
gi|5 : ctgtgaaagaaacatataattatataattacaattctgtaaaatatcggcttctgttgtcatatgaataacattTATA--TCA-TTACCTAATT--AT-T-G-G-AAATA----T---TTCCGCCTGA-GG--TCGTTGCGCGGAA---AAGC-GGGTTGAGCT--T-GGTGAG-TCCTTTTC-CGCGCAACGATCG-AGGACGG-GCA-TA------TTT-C-TTATATTCAA-----------TG-A-------TTA------C-------A----------A--T-TT-A-----------TT--C-A-TATTTCA--------TGCAC-TTC-TA--ATTCTAG-AAACATAC---ATTCTT---GTACATTTCAAATA-CAGACAA
gi|6 : TTGTACGATA---AAGC-GGTTTGAGCT--TTA-CGAGGTCTGCTTC-CGAGCAATGACCATAGGATGA-CCA-T-------TTT-C-CAATACTCCG-----------TC-AATAAGCTTTA------T-------ATTGC------A--TATT-T-----------TT--C-C-AATCCTA--------TGAAT-TTC-TG--TTTTTTG-AAGAGCACATAATTC-C---TTACATT
gi|7 : cttccgcttgattTATAAGTTG-CTGAATGAAT--AT-T-G-G-AAATAATTAT---GCTC-TTCGATGG--TTGTTGCGCGGTA---AGGTTAGACTGGATG--T-G-CGAAGTCTGCTTC-CGCGCAACCACCT-TGAACGG-TCA-TT------TTTAC-TAAAATTCAG-----------TT-T-------GTA------C-------T----------GCCT-TT-T-----------TTACC-ACAATTCTA--------TGTAC-CCC-TATCATTCT-G-AAACGCAC---GTcgttaaatggcgaaaacctaaacaaata
gi|8 : gaaatgTAGGTTA-TTGACTGAAT--ATAT-G-G-AAATAATA-T---ACCCATCTAA------TGTTGGGCGGCA---AAGT-GGACCAAACTCTT-G-TGTTGTCCTCCTC-TGTGAGATGAC-------------A--A------T-----CAATATCTCT-----------TT-A-------TTA------C-------A----------A--A-TT-T-----------AT--C-A-AATTCAA--------TGCAC-TTC-TA--ATTCTAGAAAGCAAAC---ATTTCTGAATTACATTTTCAGAAGCAGAC
gi|9 : -AAATA----TTTCACCCCTCCAA-AGAGTTGTTTC-CTGTA---AAGT-TGAC--ATTT--T-G-TGATGTCTGCTTC-CGTGAAGCAACTG-AGAGCAC-ACA-TA------TTT-CTTGATATTCTA-----------TT-A-------TTA------CTTTTTTTATTTGTTAC--A--T-AT-T-----------TT--CAA-AATTCTA--------TGCAC-TTC-TA--ATTCTTG-AAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTGTGAATAAAAGGTATATGATATGGTTAAAAAATTGCCCTAATGTCTTTATGATAGTAAAATTTTATAT