lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111 111111111 22222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111 111111
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777 1 22 1 88888888888888888888888888 6666666666666666666 1 5555 22 2 1 4444 2 1 333333 22222 2 2222 2 6666666666 1 11 2 3333333333333 1 11 3333 33 444444444444444 666666666 1 66666666 22 1 333333333 1 111 2 1 2222 11 1 44 1 1 2 22 22 1 333 33333333333333333333333333333333333333333333333333333333333333333333333333 2222 2 2 1 1 2 1 3333 999999999999999999999999999999999999999999999999999999999 2222 11 111 1 22222222222 111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111 111 333333333333 11111 1111 1 1 11 222 222 333333333333333333333333333333333333333333333333 11 2222 222 11 111111
lowQualScore : 6 6 888888888888888888888888888888888888888888888888888888888888888888888888888 5 4 4 77 5 55555555555555555555555555 6 0000000000000000000 5 3333 77 0 5 9999 0 7 666666 88888 0 88 7777 6 0 9999999999 3 99 7 1 7 6666666666666 6 0 33 7 0000 33 444444444444444 111111111 7 77777777 77 5 999999999 6 6 6 7 444 6 3 7777 88 7 5 55 3 3 6 33 66 4 0 000 66666666666666666666666666666666666666666666666666666666666666666666666666 9999 7 0 7 4 0 0 0 8888 3 111111111111111111111111111111111111111111111111111111111 0 6666 1 77 5 111 5 5 0 88 55555555555 111111 0 5 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 777 5 5 777 5 0 999 555555555555 77 22222 1111 6 55 3 7 44 333 6 555 000000000000000000000000000000000000000000000000 44 8888 6 7 333 00 555555
lowQualScore : . . ........................................................................... . . . .. . .......................... . ................... . .... .. . . .... . . ...... ..... . .. .... . . .......... . .. . . . ............. . . .. . .... .. ............... ......... . ........ .. . ......... . . . . ... . . .... .. . . .. . . . .. .. . . ... .......................................................................... .... . . . . . . . .... . ......................................................... . .... . .. . ... . . . .. ........... ...... . . ..................................................................................................................................................................................................................................................................................................................................................................... . ... . . ... . . ... ............ .. ..... .... . .. . . .. ... . ... ................................................ .. .... . . ... .. ......
lowQualScore : 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 55 5 00000000000000000000000000 0 0000000000000000000 5 0000 55 0 0 0000 0 0 000000 00000 0 55 5555 0 0 5555555555 3 33 3 0 3 3333333333333 0 7 33 3 7777 33 555555555555555 000000000 0 00000000 55 5 555555555 0 0 0 0 333 7 3 7777 33 0 0 00 3 3 7 00 00 0 5 000 00000000000000000000000000000000000000000000000000000000000000000000000000 5555 5 0 0 0 0 0 0 8888 2 888888888888888888888888888888888888888888888888888888888 8 7777 1 77 0 111 0 0 0 99 99999999999 666666 2 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 666 0 0 111 0 1 111 000000000000 99 88888 8888 7 00 3 3 00 333 0 777 000000000000000000000000000000000000000000000000 77 3333 0 3 333 77 000000
consensus : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAANCAAGAANCCCAATACTTCAAATTACCTACTCCTTTGTAGTAGTTGTTATAGACCCAAGCGNCNTGATGANATTGCNGNATGAAAATACATATNAGTTTGTAGGGGGAAATGATTAATATTACTGGAAAGTGTANAGTTGTCAGAAAAAAAAGGTAGGAGAAGGGGCAGGTTTCTTGGTTCCACGTNTATATGGGCATCATTAGGGTGTTACATGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTA---CT-CC-----CCTTAAG-AATTTTTTGATTATATAAAAT---AAATACATTTATCTTTCTCGTAGATAGATTATTTTCTG-----TAAATTTGCCAAGCAAGAATTTACTA-AAT-ACACAACTTTATATGNNAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGAC-T--TTAAATGTG--TCACAACT-TTTTTATT-TTTATA-TTGAAAGTTTTATAATGACGCNGTCACNTGANNTCACATGTTCATTAA--GTTGACTGAGTCGGAAAGATTCTG-ATGTGTTCCGCTCCAAATCTTTTAAATTAATAATGNNAAAACGGTGGTATGTTTAAACGCCTGAACAGAANATGGAA-CGACAATC-GAAT---GTAAATGTATTAATGC----AATGTAGTTTTAA-AAAATACTAAAANTCGGG----------AGGGGGGGTGGATACTTCATTTCAA-TCGAAATC-A-G-AA-T-TTAG-GAATTTGTTT-ACAAG-C-G----TTTAAA---ACAATCT-TATAT-------T--TG--------------AA-T-T-------------T---------------AA-AA---G-------G-T-ATA-----TCA-AA---TGC-TTGT-A-------T-CAG-AA-T--TT--A---CATA-AAGA-A-C------------------------T---------------TGTT----AG---CG----AG-CA------GC--GA---C-A--CTTGC--G----GGCAGAGAA-C-------GCAC---G--GG---A--ACA---------CAC-----A-G-GGT-TTGTAACACCCCCCCCCCTCCTCCC-C--------CCCCCCCC------TTTCCGGA-G-C-A-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGNAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATT---TA-C-TATA-G-TATATAAAT-TACG-------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGGGGGGGGGGGGGTG------TAAATCCGCCTAT
Reference ( gi|1 ) : TACGAAAGCCAGGAAGCTT----GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAAGT-----TT-------A------A--ATAGATCCAAGCGG-GTG-TG-T-TTG-GGCGTGAAAATACATAT--GTTTGTAGGGGGAAATGAT--ATA-TACTGGAAAGTGTACA-TTGT-AGATAAAA---GT-GGA-AAATGGCA-GTTTCTTGGTTCCACGTGCATGTGGGTA-CATTA--GT----T-TGAGGAAAG-CGATTCT-GTTGTATTTTATAGAATTA---CT-CC-----CCTTAAGAAATTTTCTGATTATGTAAAAT---AAATACATTTTACTTTCG-GTA---AAAT-A-TTTCTGGTTTTT---TTTGCCATGCAAGAATTTA-TATAATTATACA--TTTATAT-CAAATCA-AAGATAAATATAGAAAGCATAGGACATGGTAG-TATTTATA-ATGAC-T--TTAAATGTG--TAACCAC--TTTTTATT-TTTATA-TTG-AAGTTTTGAAATGAT-CTGTCACGTGATCTCATAT------TAACCATT--TCGAGTCG-AATGA--CTGGATG-----CTCTCC---TCT--------AATAA--AAAAAACGGT-AT-TGTTTACACGC-TGATCAGAAAATGGAA-CGA-AATC-GAAT--AGTAAATG-ATCAATGC----AATGTAGTTTTAA-AAAATACTAAAAATCGGGCGGGGGTGGGGGGGGGGGTGGATACTTCATTTTAA-TCGAAATC-A-G-AA-T-TTAG-GAATTTGTTT-GCAAG-C-A----TTTAAA---ACAATCT-TATAT-------T--TG--------------AA-T-T-------------T---------------AA-AA---G-------G-T-ATA-----TCA-AA---TGC-TTGT-A-------T-CAG-AA-T--TT--A---CATA-AAGA-A-C------------------------T---------------TGTT----AA---CG----AG-CA------GC--GA---T-A--TTTAC--G----GGCAAAGAA-C-------ACACCCCG--GG---A--ACA---------CAC-----A-A-GGT-TTGTAACATCCCCCCCCCCCCTCCCCC--------CCCCCCCC------TTTACGGA-G-C-A-AA-CTTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGGAG-TCAGGGTGGGGG---AAGTTACCGAT--TAATT---CAGC-TATA-GTTATATACATGTACG-------------------TTACAATAAATA----TGGCCACA---AGAAAGAGGGGGGGGGGGGGGGGTGCGGGGCTAAATCCGCCTATG
gi|2 : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCA-TCAAAAACAAGAATCC--ATACTTCAAATT-----CTCCTTTGTA------GTTATAGACCCAAGCGC-TTG-TG-AATTG-CGGATGAAAATAC-TATA-GTTTGTAGGGGGAAATGAT--ATA-TACTGGAAAGTGTAAAGTTGTCAGAAAAAA---GT-GGA-AAG-GGCA-GTTTCTTGGTTCCACGTCTATATGGGCATCATTA--GTGTTAC-TGAGGAAGT-CGATTCCCGTTGTATTTTATGGA-TTA---CTTCC-----CCTTAAGAAATTTTTTGATTATATAAA-T---AAATACATTTATCTTTCTCGTA---AGATTA-TTTCTG-----TAAATTTGCCAAGCAAGAATTTA-TA-AAT-ACATA--TTTATAT-GCAATCT-AGGGTAAACATTGAAAGCATAGGACACTGTAG-TATTTATA-ATGAC-T--ATAAATGTG--TCACAACT-TTTTTATT-TTTATATTTG-AAGTTTT
gi|8 : gTCCAAATCAGCCAATCAAAATCAAGAAATCCAATAC-TCAAATTACCTATT-------AGTAGTTA--ATAGACCCAAGCAGCATGATGAT-TTGCGGTATGAAAATACATATTAG-TTGTAGGGGGAAATGATTAATATTACT-GAAAGTGT-CAGTTGT-AGAAAAAAAAGGTAGGAGAAAGGGCAGGTTTCTTGGTTCCACGTGTA-AT-GGCA-CATTAGGGT----TATGAGGAAAGTCGATTCC-GTTGTA-TTTAT-GAATTA---TT-CCTTCCACCTTAAG--ATTTTTAGATTA-ATAAAATATAAAATACATTTATCTTTCT-GTAGATAAAT-ATTTTCTG-----TAAATTTGCCAAGCAAGAATTTACTA-AA--ATACAACTTTA-ATGCAAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAGATATTTATAGATGAC-CTATTAAATGTG--TCACAACT-TTTTTATT-TTTATA-TTGAAAGTTTTtgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggtcatttaaaatcgaaataaagaaattaggaatttgttttaaaagcgttgaaattatctgatatttgaattctacagcatgaattaaaaggtaaatcaaatgcttgtataagagtttacatgaagaatcttgaacatcggccttgggtaaaattgttaagagcagcgacacttgaggcaaagaactcacaagtttgtaacacaacaccccctcttttcggacacaatgtctttaaatcaacacaccatgacagcttgggcgt
gi|27 : aatcccagattcaagatatcaatAAG-CGATTCC-GTTGTATTTTATTGAATTACCCCT-CC-----CCCTAAATAATTTTCTAATGATATAAAAT----AATACATTTGTCTTTCtgttgatttggaaataatgtttcattttaacacctttgaaat
gi|4 : ggcacaatatagtgacGACATG-TAGCTATTTATA-ATTACTT--TTAAATGTGACTAACAACTTTTTTTATTATTTATA-TTGAAAGTTTTttttgtacgt
gi|5 : AGTCTTATAATGACGCAATTACTTGAAATCATA------------GTT--CTGAGTCG-AAAGATTCTG-ATG-----TGTTCC---TCTTTTAAATTAATAATGGCAAAACGGTGAT-TGTTTA-ACGCCTGAACAGAATATGAAA-CGACAATC-GAA----GTAAATGTATTA----------TGTAGTTTTAACAAAATACTAAAACTCGGG---------AGAGGGGGCTG----CTTCATTTTA--TCGAAATCCA-C-AA-T-TTAGCGCATTCGTT----AAA-G-A----TT--GA---ACAATCT-TAT-T-------T--TGCTTCTATAGACATAAA-T-TA------------C---------------AA-AA---G-------GCT-ATA-----TCA-CA---TGC-TTGT-A-------T-CAG----T--TT--AGTACATA-AAGATA-CC-----------------------T---------------TGTTT---AA---CG----AGGCA------GCACGA---C-A--CTTAC--G----GGCAACGAAAC-------ACACCCCGCAGG---A--ACA---------CAC-----A---GGTGTTGTA---TCCCCCCC-------------------------CC------TTTCCGGA---C-A-AA-CGTC--TTAAATC----AACA------------CATGACA--GC-A---GG-A--CGT-AGTAG-TCGGGG-GGGGG---AAGTTACTGA---TAATT---TGCT-TATA-G-TATATA-AT-TA-G-------------------TTACA--CAATA----TGACCACA---AGAAA----GGGGGGGAGGGGGGTG------TAAATCCGCCTATtcttggtcaggaaatatatatcttcaataacaatcctcattaaaactgtcacatgtttcacatgttcattaaattgactgagtcggaaagactgatgtgttcctctttaaatctaataatgcaaaaacggtgtatgtttaaacgctgaacagaatatgaaaacgacaatcgaagtaaatgtatatgtagttttaacaaatactaaaactcgggagagggggtgcttcattttatcgaaatcaacaatttaggaatttgtttaaaagcattgaaaaaatcttatatttgaatttcttacagcataaattaaaacgtatatcaaatgcttgttatcagaatatttacataaagaatcttgtttaacgcagcagcgaccacttacgggcaagaacacaccccaggaaacacatagttgtatcccccccccccctttccggaccaaacgtctttaaatcaaaacacatgacagcatggacgtagagtcgggtggggaagttactgatatatttactatagtatataattgtacttacaataaatatgaccacaagaaaggggggaggggggtg
gi|4 : aaactctcttatct-CTGTCACATG-TTTCACATGTTCATTAA--ATTGACTGAGTCGGAAAGA--CTG-ATGTGTTCCTCTTTAAATCT--------AATAATGCAAAAACGGT-GTATGTTTAAACGC-TGAACAGAATATGAAAACGACAATC-GAA----GTAAATGTAT-----------ATGTAGTTTTAA-CAAATACTAAAACTCGGG----------AGAGGGGGTG----CTTCATTTTA--TCGAAATC-A-ACAA-T-TTAG-GAATTTGTTT-AAAAG-C-A----TTGAAA---A-AATCT-TATAT-------T--TG--------------AA-T-T-------------TCTTACAGCATAAATTAA-AA---C-------G-T-ATA-----TCA-AA---TGC-TTGTTA-------T-CAG-AA-TATTT--A---CATA-AAGA-ATC------------------------T---------------TGTTT---AA---CGC---AG-CA------GC--GA---CCA--CTTAC--G----GGCAA-GAA-C-------ACACCCCA--GG---A--A-A---------CAC-----ATA-G---TTGTA------TCCCCCC-------------------CCCCCC------TTTCCGGA-C-C-A-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-A-GAG-TC-GGGT-GGGG---AAGTTACTGAT--ATATT---TA-C-TATA-G-TATATAATTGTAC--------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGAGGGGGGaaactaacatgtgcttgaggccgggcggatgaagaaaactgtgaattaatgggctgtgtttgcctatttccaggttcacaag
gi|26 : gacatgtagctatttataattacttttaaatgtgactaacaactttttttattatttatattgaaagtttttcttggtcaggaaatatatatcttcaataacaatcctcattaaaaAGAAAATGGAA-CGA-AATC-TAAT--TGTAAATG-ATTAATGT----AAT-----------------TTAAAAATCGGG----------AGGGGGGG-GGATACTGCATTTTAA-TCGAAATA-A-G-AA-T-TTAG-GAAATTGTTT-GCAAG-C-A-----TTAAA---ACAATCT-TATAtg
gi|25 : GAAAACGGGA-AAA-AATCAGAATTTAG--AATG-ATCAATGCGACTAAACCAGT------AAAA----AAAAATCG--------------GAAAAATTGCT--TTCATTCCA--TCAAAATC-A-A-AAGT-TTTG-GAGATTATTT-GCAAG-CGA----T--AAA---ACAATTT-TATA--------T--TG--------------AA-T-
gi|12 : ggaacggaaagGGGGGTATATGCTTTATTTCAA-TCAAAATT-A-A-CA-T-TTAAAGACTTTATTT-ACAAG-T-G----CT-AAA---ACAATATATATATAATTATAT--TG--------------AA-TAT-------------T---------------GATAATATGAATATTTG-T-ATAACTATTTA-AG---CGT-TTAT-A---------CAGCGG-T--TT--A---C-TAGAATA-A-A------------------------T---------------TGAC----AG---CG----AG-CT------GC--GA---T-AACTTT----G----GGTAGAGAA---------------TG--GA---A--ATAATGTACATGTAC-----A-T-GAT-TTATAA-------CCGCCTCATCCTAC--------CCCACTCC------TT---GTG-G-CAA-AA-C--C-TTTCAATaatatt
gi|10 : ggaacgggacggacaatgaaataaaacactaaatttagaatgaaaataacaccaagaattATATTTTATTTCAA-TCATAATC-A-A-CA-TATCAG-GAATTTGTTT-ACAAG-C-GGTCCTGTAAACTTGTTATAC-TATATAGTA---T--TG--------------AAGG-T-------------T---------------GA-AA---T-------G-T-A---------A-GAGTTTAC-TCGT-G-------T--AG-CG-T--TT------TACA-AGGA-T-C------------------------TTTTGACGGCTCCGGGTGTT----AG---CT----AG-TC------GT--GA---C-A--CCTATAAG----GGTAGAGAA-T-------G-A----G--GA---A--ACACCC------CAC-----A-G-GGT-TT-----ACCCCCTACCTTCCTCacatgtatgtagactatttacacgtaatacagga
gi|2 : aagaaatagaaaaaaataagtatagctacatgtacaggtaacaccaaaaaattaggaaaatTCATTTAAAATCGAAATA-AAG-AA-A-TTAG-GAATTTGTTTTAAAAG-C-G----TT-GAA---ATTATCT-GATAT-------T--TG--------------AA-T-TCTACAGCATGAATT---------------AA-AA---G-------G-T-AAA-----TCA-AA---TGC-TTGT-A-------T-AAG-AG-T--TT--A---CATG-AAGA-A-TCTTGAACATCGGCCTTGGGTAAAAT---------------TGTT----AA----G----AG-CA------GC--GA---C-A--CTTG---A----GGCAAAGAA-C-------TCAC------------------------------------A-AGT-TTGTAACA---------------CAAC--------ACCCCCTC------TTTTCGGA---C-ACAA-TGTC-TTTAAATCAA--CACAC-----------CATGACA--GC-TT--GG-G--CGT-ttgtgaccaaacctttaacatatatatgtacatgcttttacacatttataaagcagtgtatgagtgcctttacaatagggagtgtggtacatgtatgtataaagaacgata
gi|9 : gtacgaaagccagaaggctcattcgcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatccaaatcagccatcaaaaacaagaatccatacttcaaattctcctttgtagttatagacccaagcgcttgtgaattgcggatgaaaatactatagtttgtagggggaaatgatatatactggaaagtgtaaagttgtcagaaaaaagtggaaagggcagtttcttggttccacgtctatatgggcatcattagtgttactgaggaagtcgattcccgttgtattttatggattacttccccttaagaaattttttgattatataaataaatacatttatctttctcgtaagattatttctgtaaatttgccaagcaagaatttataaatacatatttatatgcaatctagggtaaacattgaaagcataggacactgtagtatttataatgactataaatgtgtcacaacttttttatttttatatttgaagtttttgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggTC-A-G-AA-T-TTAG-AAATTTGTTT-ACAAA-C-G----T
gi|14 : ttgttcttaaaatatttaaaacagaaatctttgtacatatatacgcaaatacttgttccaaaatcgttattttagaaatgaatgtattttatAATTCATTT-CCAAAAT-A----TTTGAA-------TTC-TACAT-------TCATG--------------AT-A-T-------------T---------------AA-AA---G-------A-TTAAA-----TCGGAA---T-C-TAGT-A-------T-AAG-AA-C--TTTAA---CATG-AAGA-ATC------------------------T---------------TGAA----AAATTCG-----G-CATTATTGGA--GAAATT-G--TTT-----------TAAAGGA-CCAGCCGAACACTGCG--GGCAAAGTATA---------CAT-----A-A-GGT-TTGTAACACAACACCCACCCCTCTC-------------------------TTCCGGA-G-C-A-AAGCGTCTTTTAAATCGAGGAATAAATTAATATTACCATGACA--GC-ATGGGG-G--CGT-AGGgagagcagcgacacttgcaggcagggaaacacaagggtttgtaacccccccccctcctcgcccattcaccaccccaccctcaccgtttccggagcaaacgtctttaaatcaacacaaatgacagtgtaagtatatatgaataagataaggaatattctgatcttctcaagaatttaacttaatgtgttcgatttaatcatttttatttttacctaacagattaattaattactttgtgaccgcagtactgcaatgctaaataataggtaggattcaacacagtatgcagcttaattatataaatacacatagaagga
gi|18 : tcttttaaaatcaatgagccatG--------------AA-T-T-------------T---------------AG-AA---A-------G-C-GTA-----T--------TGC-TTTT-AAGAAATGT-CGG-TA-T--CG--A---CAT---ATG-A-C------------------------T---------------TAT----------CG----AG-AA------GC--GA---C-A--ATCGT--G----AGCAGAGGA-C-------GTA----A--AG---C--ACA---------CACAGTTAA-G-GGT-TT---ATATCTCCCTCTCttccgttggagggcaaggggtaatccccagtttttgaaaagtaagttatgtga
gi|9 : aatcggggaaaatatgctgtactagtttaaggaatttgataacaggtgtttaacaagttagattaagagactgtaaaataaatttattttgataagctattctaattattatgaga-AA---TGTATTTT-A-------TTCAG-AA-T--TT--A---GA------A-A-T------------------------T---------------TGTTTACAAA---CGTGAGAG-CA------GC--GA---C-A--CTTGC--A----GGCA---------------------G--GG---A--A-A---------CAC-----A-AGGGT-TTGTAAC--CCCCCCCCCTCCTCGCCCATTCACCACCCCACCCTCACCGTTTCCGGA-G-C-A-AA-CGTC-TTTAAATCAA--CACA------------AATGACA--Ggtggcaaaacgtct
gi|11 : ttgttcttaaaatatttaaaacagaaatctttgtacatatatacgcaaatacttgttccaaaatcgttattttagaaatg-------T-CGG-AA-T--TC--A--------AAAA-A-G------------------------T---------------T-TT----AG---CA----AA-CA------GC--GA---A-ACCTTTGC--GATTGGGTAGAGAG-T-------GGA----A--AG---A--ATA---------CAC-----A-T-GGT-TTA------CCCCCTCCCCCCTTCTCtgtaagtatatatgaataagataaggaatattctgatcttctcaagaatttaacttaatgtgttcgatttaatcatttttatttttacctaacagattaattaattactttgtgaccgcagtactgcaatgctaaataataggtaggattcaacacagtatgcagcttaattatataaatacacatagaagga
gi|13 : aaatggggcgttgctaaaacgtggaacgtaaaacggaactggacggaatataacattgattatattgtagctaatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataatt-CAG-AAGTG-TT--A---CATA-------------------------------------------------TGT-----AG---CG----AG-CA------GC--GA---C-A--CCTGT--G----GGTTAAGAA-T-------GGA----A--AG---A--ACA---------CAC-----A-G-GCC-TT---ATATCCCCCgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|3 : tggaattcagaaatatatacgggtgttactaaaacgcggagcagaaattataatgattaatgtagtaaaggtaacaccaaaaatctggaaacatgttttactttaatcaaaattttaggacatttttaaaagcggcaaaacaacttagagctaaatttgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgaG---A--ACA---------CAC-----A-G-GGT-TTGTA-CACCCCCCCCC------------------CCCCCTTG------TTTTTGGA-A-C-A-AAACGTC-TTTAAATCAA--CACA------------CATGCCA--GT-GT--GGTA--TGT-Attatttgtggcaaaacgt
gi|19 : CCTCTCCT--------CCATTTTT------TATACGGATGTC-A-AA-CTTC-CT-AAATCAA--AACA------------CATGCCACTGCAAT--GG-ATCCGTCAGTAGCTCGGGGTGGGGGGTAAAGTTAGTGATTCTAATTTTCCAACATATACGTTA-ATAAATCTACGACCCTTCTGTAACTGGATTTTAC-ATAAATACTACTGACC-CACTCAGACAGAGGGGGGGTGGGGtataagtcaacaagttttaacatcatcttttttaactaacaaggtcttcgtgtccgcagcactgcaatcctgaatagtaggctagatatttctaatctaaatacatgtacgtgtatcttatcactagattaataatggaaagaccttgtaattccactaaaacataaattctctgttaatattctaactatttcatacatcatgaaatagatttaataattcctttcaaaaggatcataaattccattttctttctttggaggggtggggtggggggctattgttactcttttatttccttttgttattgaattttttttttttcaccctctgtatcttgtaggggtcaaccagttcatgtacgtacattcacttttcataaatcgatctcaaatggggcaaacctttcacataccggattcgctcgctttagaattcaatatgatagataataattattatatcaagtgcagaactaaaatcaaattccatttaatatcgtcttaaaatatcccattcgattaaaagcaaattcgattaaagaaggctatgttagatggaaatcgttcaaaaattatcattctatctttttcaatatatatagatagactatcataa
15 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): GTAGCGAACCTATGAGTAGTGAATAGAAAGAACACACATGATTTATATGCCCCGCTCCCTCTTATTGCAAAGCGTCTTTAATGCACATGCATTTACTTATAGATAGTATGTAGTGTTTGCACTTACAACAGGTTAAAACAACGATAATCATGATCTCATTAAGTTAAACATATCGTATTTGATATTTTGAATTAATGGATACTGATTGATCACAATACTTCAATCTTAAATAGGCGAAAACTTCTGGCATCTAAATATTTGTGCATGAATCTTACACGTGTACATGTATTATTTAGATTAAGAATGAGATGATATTTTAATTCTACTCAAAAACAAATTCTCAATTAGCCTTTTACCTCTTTCATATATTTTTTTAAATAAATCTGCCAATTACTATAGTCATAAACTTCACCTCCGTTTTCATTTACTCTGTTTCAATCTTTTCTGCTGTATCTCTTGGGGTTCAACACTAATCCGCAACCAAGGATAACGGTGCATGTACGAACGTTCACTTTACATAAATTGATCCAAAAAAGAGGCAAACCTTTTATAATTTTTGGACACGTTTGCCTCAA
Unaligned ( gi|7 ): AGTTTTACAGTAAGCTATTGACAAAGATGTTGGTGAACAGCGACACCTATGAGTAGAGAATGGAAAAAATACATATGGTCTATATCTGTACATGTACCCCCTCCCTTTCTCGTGGCAAGACAACCATGTATTTAAACATAATACAGAGTACAACAGGTTGTGTGGTATGTATAAAACAACGGTGATTCATGATTTTATTTTAAAAGCCAACAAGACAAACATCTTGTGTGTTTTTTTATTTATTATAATTGTGTGTAGTTTATCTTATATTACTAATGAAGACTGGGTGTCCGCAGCACTCAATCCTACATGTACTGTAAGTAGGTTAAAGCATTTGGTAGTTTAACTCTAATCTAAATACTTTTCGAGTCTTTTTAGTAATAATTGGATTAAATATAGGTATAAATTTCATCTTAGTTTTCATTGGTTCTGTTTCAGTTGTTTTCCCCCGCTGTATATCTCTTTGGTTTCAACATTAATCAGCAGGATACCAGTACATTTACGAACCTCCCCTTTCCATAAATTGATCCTAAACGATGTAAGCCTT
Unaligned ( gi|15 ): TTTTTTTCTTCGCTGTACCTCTTCGGGTTCAACACTAATCCGCAGGATACCGTTTCATACGAACTTTAACTTCACATAAATTGATTCCAAATGAGGCAAACCTCTTATACACATCGGATTCGTTTGCTTTTTCAAAAATATCTGTGCTGTATAATTATATATTGAACCAAATTGAAATTCAAGTTCAATTATCTTGAAAATATCCAGTTCGATTAAAAGCCAATTTGATTTTTTTAAAAGCTATGTTAGGGGGACATTGTTGGAAAAATTATTTTGTCTTTTCGATGTACGTTGCTTC
Unaligned ( gi|16 ): GTTCAACACAGGTGCACAGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACCTTTCAGACACTTTGCGCGTATTCGCTTTAAAATTTGATGTGGTACATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGATAATAAGCGAATTTCATTAAGATAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|17 ): TCAACACGGTGCAACGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACTTTCAGACACTTTGGCGCGTATTCGCTTTAAAATTTGATGTGTACAATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGGATAATAAGCGAATTTATTAAAGTTAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|20 ): ATGATATGTACAGCAAAACGAGTGTTGCTAACGCGGAACGAAAAACGGAACGGGACGGAAAACGGAACGAAATTTAAGAATTAAAATTATTGATGTTGCTAAGATAACACCAAACTCGAGGAAATGTGCTTTATTTTCATATAGATAAAAGTTTTTGATGTATATGTATTTACACATAACACAGTATGTGTATACTTACAACAGGGAGTGTGGTA
Unaligned ( gi|21 ): TGACCGCAGCACTCATATTCCAAATAGACTAGGACTTCTGGCAGTTTATTTTTAATTCAAATACTTGTATCTTACATGTATCATTCAGATGAATGAGATGACCTTTAAATTCCATTCAAATATACATGTAAATTCTCTGTCAGTCTTTTAGATATTTCATATTATATTTGTTAATTTCGTTTAATAGAAATATAAATTTCACCTTC
Unaligned ( gi|22 ): CAAAATAAAAATTTTGGTTTTAATTACAAGCGGTGAAACAATTCTATGATTAAATGCTACAGCATGATTTAATTAAAAGGTAAGTGAAATGTTTGTAGACCTGTATAGAGTTTACAGAGCAATTTACAAGAATCTTGAAATTTCAGTATTGATAAAATGTTTAAAAGCAGCAATACCTGTGAGTAAAAA
Unaligned ( gi|23 ): GCTGTGTCTCTTCAGGTCCAACACTAATCCGCAGTTTAAGATACAGGTGCATGTATACCAACTTTCACAACACATAAATTTATCTCAAATAAACAAACATTTAAAACATTTTTGACCCGTGTGTTTTAAAATTTATGCGACACATAAATGTATATGTTCCAGACGTTTAACTGAATTCAGATTCAACTT
Unaligned ( gi|24 ): GGTGCTGCTAAACGTGAAGAAAACCGAAAGAAACGGAAAATGGAAAACAATTTAAGAAATGAATTAAAATTGTTAATATAGATAAGATAACACCAACAATAGGAAAAATATGTTTTATATCAATATAAATAAAATGAAAGGAATTTGTTTATAAGCAGT
Unaligned ( gi|28 ): AATGACGAAGTGTTACATATGTAGCGGCAGCCGACACCTGTGGGTTAAGAATGGAAAGAACACACAGGCCTATATCCCCCTTATTTGTGGCAAAACG
Unaligned ( gi|29 ): GAAAGGACACTTATGGGTAGAGAATGGAAGGAACGCACCGGGTTAATGTATATATATGTGCCCCTCCCCGCCCCCATTTTCATGTTGACAAAACGAC
Unaligned ( gi|30 ): CAAGACAAGTAGATTGTTGGTAAAACACGGAACGGAAAGCGGAATGGAACGCAATTTAAGAATTAAAATAATTAATGTAGCTAAGATGCTACC
Unaligned ( gi|31 ): GAAACAGGTAAAATTTGTCGATTGAGAACAGGCTTTGAGATGAAGAAATGTGAATTATGGGCTGTTTGCTATTTTCACAA
Unaligned ( gi|32 ): CCTACGCCTTGTGGGGGAAATATTTCAGTACATGTATGTAGATTATTCA
Alignments
lowQualScore : 111111111111111111111111 1111111111111111111
lowQualScore : 2222 777777777777777777777777777777777777777777777777777777777777777777 33 1 777777777777777777777777 44444444444 1 2 33 2 2 333 1 2 2 777777777 1 1 111 111 1 22222 2222 2222 2222222 1 2 33333 22 33 333 1 2 1 11 1 11 1 88888888888888888 2 33 1 0000000000000000000 444 22 1 22 2222222222 1 33333333333 111 111 111111 22222222222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5555555555555555 2222222222222222 2222222222222 111111 111 333333333333 1111 1 1 111 1111 33333333 1 1 999999999999999999999999 1 2222 111 333333 33333
lowQualScore : 4444 555555555555555555555555555555555555555555555555555555555555555555 7 1 11 00 7 3 444444444444444444444444 33333333333 77 4 7 7 7 00 3 6 88 6 3 777 2 999 9 6 3 1 7 6 3 666666666 0 0 3 111 777 0 55555 4444 3 3 0000 1 5555555 0 6 3 33333 7 55 7 0 00 7 22 000 2 0 0 33 0 33 2 88 8 0 0 4 5 1 1 999 0 55555555555555555 3 00 3 7 2222222222222222222 7777 333 3 33 1 6 6 5 6 88 6 9999999999 0 55 99 6 6 5 1 3 00000000000 2 2 333 3 000 222222 4 4 4 4 4 99999999999 777 1 0 4 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 33 66 2 2 33 6666 5555 2 0000000000000000 444 777 66666 33 4444444444444444 0 222 2 1111111111111 1 55 222222 4 1 444 4 8 4 66 000000000000 66 1111 8888 5 0 0 6 55 777 4444 66666666 0 0 3 444444444444444444444444 5 1111 3 777 66 2 888888 33333
lowQualScore : .... .................................................................. . . .. .. . . ........................ ........... .. . . . . .. . . .. . . ... . ... . . . . . . . ......... . . . ... ... . ..... .... . . .... . ....... . . . ..... . .. . . .. . .. ... . . . .. . .. . .. . . . . . . . ... . ................. . .. . . ................... .... ... . .. . . . . . .. . .......... . .. .. . . . . . ........... . . ... . ... ...... . . . . . ........... ... . . . ............................................................................................................................................................................................................ . .. .. . . .. .... .... . ................ ... ... ..... .. ................ . ... . ............. . .. ...... . . ... . . . .. ............ .. .... .... . . . . .. ... .... ........ . . . ........................ . .... . ... .. . ...... .....
lowQualScore : 0000 000000000000000000000000000000000000000000000000000000000000000000 3 0 77 33 3 3 000000000000000000000000 00000000000 77 0 3 0 3 77 7 7 33 7 3 333 3 333 0 7 3 0 3 7 7 333333333 0 0 2 000 555 0 00000 2222 2 2 8888 2 2222222 7 0 7 33333 3 33 3 7 33 3 00 777 8 0 0 88 0 88 5 88 0 8 8 0 0 0 0 333 7 00000000000000000 3 77 3 3 0000000000000000000 7777 333 2 88 0 7 7 0 7 88 7 2222222222 8 55 22 7 7 7 5 3 88888888888 2 5 555 9 999 666666 4 4 4 4 4 00000000000 888 9 1 4 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 99 33 7 7 77 3333 7777 7 5555555555555555 444 888 22222 44 1111111111111111 4 111 9 5555555555555 1 33 888888 4 9 666 4 9 4 99 666666666666 99 6666 9999 7 8 0 5 88 555 5555 00000000 0 0 2 555555555555555555555555 5 2222 2 555 88 5 333333 33333
consensus : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAA-TT-----CT-------AGTAG-----ATAGACCCAAGCG-C-TGGTGA--TTGCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GTGGGAGAAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAG--T-TT-C-TGAGGAAAG-CGATTCC-GTTGTATTTTA-T-GAATTA---CT-CC-----CCTTAAG-AAATTTTCTGATTATATAAAAT---AAATACATTTATCTTTCT-GTAGGTAAA-TATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACT--TT-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATT--GTT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTCC---TCT--------AATAATGNAAAAACGGTG-T-TGTTTAAACGC-TGAACAGAAAACGGAA-CG-ACAATC-GAAT-GTA-AATGTATTAATGCGATGTAGTTT--TAA-AA-AATACTAAAAATCGGG----------AGAGGGGGTGGATACTTCATTTCAA-TCGAAAT-CA-G-AA-T-TT-AG-GAATTTGTTT-ACAAGCG----T----TTAAA---ACAATCT-TATAT-------TTG--------------AA-T-T-------------T---------------AA-AA---G-------G-TATA------TCAA-A---TG------C-TTGT-A-------T-CAG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GA-C-AC--TTGC--G----GGCAGAG-AACGGA----------AGGA---ACA---CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT-CCC-CC--------CCCC-CCCT------T-TCCGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GCA-T--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGATT--AATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
Reference ( family-1084 ) : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAANCAAGAANCCCAATACTTCAAA-TTACCTACTCCTTTGTAGTAGTTGTTATAGACCCAAGCGNCNTGATGANATTGCNGNATGAAAATACATATNAGTTTGTAGGGGGAAATGATTAATATTACTGGAAAGTGTANAGTTGTCAGAAAAAAAAGGTAGGAGAAGGGGCAGGTTTCTTGGTTCCACGTNTATATGGGCATCATTAGGGTGTTACATGAGGAAAG-CGATTCC-GTTGTATTTTA-T-GAATTA---CT-CC-----CCTTAAG-AA-TTTTTTGATTATATAAAAT---AAATACATTTATCTTTCTCGTAGATAGATTATTTTCTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATACACAACTTTATATGNNAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACT--TT-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTGAAAGTTTTATAATGACGCNGTCACNTGANNTCACATGT--TCATTAAGTTGACTGAGTCGGAAAGATTCTG-ATGTGTTCCGCTCCAAATCTTTTAAATTAATAATGNNAAAACGGTGGTATGTTTAAACGCCTGAACAGAANATGGAA-CG-ACAATC-GAAT-GTA-AATGTATTAATGCAATGTAGTTT--TAA-AA-AATACTAAAANTCGGG----------AGGGGGGGTGGATACTTCATTTCAA-TCGAAAT-CA-G-AA-T-TT-AG-GAATTTGTTT-ACAAGCG----T----TTAAA---ACAATCT-TATAT-------TTG--------------AA-T-T-------------T---------------AA-AA---G-------G-TATA------TCAA-A---TG------C-TTGT-A-------T-CAG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GA-C-AC--TTGC--G----GGCAGAG-AACGCA-----C----GGGA---ACA---CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT-CCC-CC--------CCCC-CCCT------T-TCCGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GCA-T--GG-A--CGT-AGNAG-TCGGGGTGGGGG---AAGTTACTGATT--AATTT----A-C-TATA-G-TATATAAAT-TACG-------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGGGGGGGGGGGGGTG------TAAATC-----CGCCTAT
gi|1 : TACGAAAGCCAGGAAGCTT----GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAAGTT----------------TAA-----ATAGATCCAAGCG----GGTGTGTTTG-GGCGTGAAAATACATAT--GTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACA-TTGT-AGATAAAA---GT-GGAAAATGG-CAG-TTTCTTGGTTCCACGTGCATGTGGGTA-CATTAG----TT---TGAGGAAAG-CGATTCT-GTTGTATTTTA-TAGAATTA---CT-CC-----CCTTAAG-AAATTTTCTGATTATGTAAAAT---AAATACATTTTACTTTC-----GGTAAAATATTT-CTGGTTTTT---TTTGCCATGCAAGAATTTATATAATTATACA--TTTATATCAAA--TCAAAGATAAATATAGAAAGCATAGGACATGGTAG-TATTTATA-ATGACT--TT-AAATGTG--TAACCACTTTTT--ATT-TTTATATTGAA-GTTTTGAAATGAT-CTGTCACGTGATCTCATAT-TAACCATT-------TCGAGTCG-AATGA--CTGGATG-----CTCTCC---TCT--------AATAA--AAAAAACGGTA-T-TGTTTACACGC-TGATCAGAAAATGGAA-CG-A-AATC-GAATAGTA-AATG-ATCAATGCAATGTAGTTT--TAA-AA-AATACTAAAAATCGGGCGGGGGTGGGGGGGGGGGTGGATACTTCATTTTAA-TCGAAAT-CA-G-AA-T-TT-AG-GAATTTGTTT-GCAAGCA----T----TTAAA---ACAATCT-TATAT-------TTG--------------AA-T-T-------------T---------------AA-AA---G-------G-TATA------TCAA-A---TG------C-TTGT-A-------T-CAG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AAC------------------G----A-GCAG--C--GA-T-AT--TTAC--G----GGCAAAG-AACACACCC--C----GGGA---ACA---CAC-----AAGGTT--TGTA-----AC----ATCCCCCCCCCCCCTCCCC-CC--------CCCC-CCCT------T-TACGGA-G-CA-AA-CTTC-TTTAAATCAA--AACA------------CATGACA--GCA-T--GG-A--CGT-AGGAG-TCAGGGTGGGGG---AAGTTACCGATT--AATTC----AGC-TATA-GTTATATACATGTACG-------------------TTACAATAAATA----TGGCCACA---AGAAAGAGGGGGGGGGGGGGGGGTGCGGGGCTAAATC-----CGCCTAT
gi|10 : ATATTTTATTTCAA-TCATAAT-CA-A-CA-TATC-AG-GAATTTGTTT-ACAAGCGGTCCT----GTAAACTTGTTATAC-TATATAGTA---TTG--------------AAGG-T-------------T---------------GA-AA---T-------G-TA----------AG-AGTTTA------C-TCGT-G-------T--AG-CG-T--T---T-TACA-AGGA-T-CTTTTGACGGCTCCGGGTG----TT----AGC------------------T----A-GTCG--T--GA-C-AC--CTATAAG----GGTAGAG-AATG-A----------GGAA---ACACCCCAC-----AGGGTT--T--------------ACCCCCTACCTTCCT-Cg
gi|11 : aagaaatagaaaaaaataagtatagctacatgtacaggtaacaccaaaaaattaggaaaat-------T-CGG-AA-T--T---CA-----AAAA-A-GT---------------T-----TT----AGC------------------A----A-ACAG--C--GA-A-ACCTTTGC--GATTGGGTAGAG-AGTGGA----------AAGA---ATA---CAC-----ATGGTT--T--------AC----CCCCTCCCCCCTTCT-Cttgtgaccaaacctttaacatatatatgtacatgcttttacacatttataaagcagtgtatgagtgcctttacaatagggagtgtggtacatgtatgtataaagaacgata
gi|12 : aaatggggcgttgctaaaacgtggaacgtaaaacggaactggacggaatataacattgattatattgtagctaatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataattACGGGA-CGGACAAT--GAA--ATA-AA-ACACTAA----ATTTAGAAT--GAA-AATAACACCAAGAATTGGG----------------GGTATATGCTTTATTTCAA-TCAAAAT-TA-A-CA-T-TTAAA-GACTTTATTT-ACAAGTG---------CTAAA---ACAATATATATATAATTATATTG--------------AA-TAT-------------T---------------GATAATATGAATATTTG-TATAACTAT-TTAA-G---CG------T-TTAT-A---------CAGCGG-T--T---TAC-TAGAATA-A-AT---------------TG----AC----AGC------------------G----A-GCTG--C--GA-TAAC--TT-T--G----GGTAGAG-AATGGA-----A----ATAATGTACATG-TAC-----ATGATT--TATA-----A-----------CCGCCTCAT-CCTACC--------CCAC-TCCT------T----GTG-G-CA-AA--ACC-TTTCAATgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|13 : gga-CAG-AAGTG-T---TACATA-------------------------TG----T-----AGC------------------G----A-GCAG--C--GA-C-AC--CTGT--G----GGTTAAG-AATGGA----------AAGA---ACA---CAC-----AGGCCT--T--------AT----ATCCCCCacatgtatgtagactatttacacgtaatacagga
gi|14 : tggaattcagaaatatatacgggtgttactaaaacgcggagcagaaattataatgattaatgtagtaaaggtaacaccaaaaatctggaaacatgttttactttaatcaaaattttaggacatttttaaaagcggcaaaacaacttagagctaaatttgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgaATAATTCATTTC----CAAAAT-------A-T-TT----GAATTC---T-ACATTCA----TGATATTAAA---AGA---T-TAAAT-------CGG--------------AA-T-C-------------T---------------A---------------G-TATAAGAACTTTAACA---TGAAGAATC-TTGA-AAAAT---T-CGG-CA-T--T----AT-TG-GAGA-A-AT---------------TG----TTTTAAAG-------------------G----A-CCAG--CCGAA-C-AC--T-GC--G----GGCAAAG-TAT----------------------A---CAT-----AAGGTT--TGTA-----AC----ACAACACCCACCCCT-CTC--------------------------T-TCCGGA-G-CA-AAGCGTCTTTTAAATCGAGGAATAAATTAATATTACCATGACA--GCA-TGGGG-G--CGT-AGttatttgtggcaaaacgt
gi|18 : tcttttaaaatcaatgagccG--------------AA-T-T-------------T---------------AG-AA---A-------G-CGTA------T--------TG------C-TTTT-AAGAAATGT-CGG-TA-T--C---GACATA---TG-A-CT---------------TA----T-------C------------------G----A-GAAG--C--GA-C-AA--TCGT--G----AGCAGAG-GACGTA----------AAGC---ACA---CACAGTTAAGGGTT--TATA-----TC----TCCCTCTCgttccgttggagggcaaggggtaatccccagtttttgaaaagtaagttatgtga
gi|19 : aatcggggaaaatatgctgtactagtttaaggaatttgataacaggtgtttaacaagttagattaagagactgtaaaataaatttattttgataagctattctaattattatgagaCCT-CTC-CT--------CCAT-TTTT------TATACGGATGTCA-AA-CTTC-CT-AAATCAA--AACA------------CATGCCACTGCAAT--GG-ATCCGTCAGTAGCTCGGGGTGGGGGGTAAAGTTAGTGATTCTAATTTTCCAA-CATATACG-TTAATAAATCTACGACCCTTCTGTAACTGGATTTTACA-TAAATACTACTGACC-CACTCAGACAGAGGGGG----GGTGGGGCT------TAAATTTTTCACGCCTATgtggcaaaacgtct
gi|2 : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCA-TCAAAAACAAGAATCC--ATACTTCAAA-TT-----CTCCTTTGTAGT------TATAGACCCAAGCG-CTTG-TGA-ATTGCGG-ATGAAAATAC-TAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTAAAGTTGTCAGAAAAAA---GTGG---AAAGGGCAG-TTTCTTGGTTCCACGTCTATATGGGCATCATTAG--TGTTAC-TGAGGAAGT-CGATTCCCGTTGTATTTTA-T-GGATTA---CTTCC-----CCTTAAG-AAATTTTTTGATTATATAAA-T---AAATACATTTATCTTTCTCGTA---AGATTATTT-CTG-----TAAATTTGCCAAGCAAGAATTTA--TAAATACATA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACTGTAG-TATTTATA-ATGACT--AT-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTTGAAGTTTTatgacataaatgttgct
gi|2 : gTCATTTAAAATCGAAAT-AAAG-AA-A-TT-AG-GAATTTGTTTTAAAAGCG----T----T-GAA---ATTATCT-GATAT-------TTG--------------AA-T-TCTACAGCATGAATT---------------AA-AA---G-------G-TAAA------TCAA-A---TG------C-TTGT-A-------T-AAG-AG-T--T---TACATG-AAGA-ATCT---------------TGAACATC----GGCCTTGGGTAAAATTGTTAAG----A-GCAG--C--GA-C-AC--TTG---A----GGCAAAG-AACTCA-----C-------A---A----------------GTT--TGTA-----AC----ACAACACCCCCT-------------------------CT------T-TTCGGA---CACAA-TGTC-TTTAAATCAA--CACAC-----------CATGACA--GCT-T--GG-G--CGT-tgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggtcatttaaaatcgaaataaagaaattaggaatttgttttaaaagcgttgaaattatctgatatttgaattctacagcatgaattaaaaggtaaatcaaatgcttgtataagagtttacatgaagaatcttgaacatcggccttgggtaaaattgttaagagcagcgacacttgaggcaaagaactcacaagtttgtaacacaacaccccctcttttcggacacaatgtctttaaatcaacacaccatgacagcttgggcgt
gi|25 : gtacgaaagccagaaggctcattcgcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatccaaatcagccatcaaaaacaagaatccatacttcaaattctcctttgtagttatagacccaagcgcttgtgaattgcggatgaaaatactatagtttgtagggggaaatgatatatactggaaagtgtaaagttgtcagaaaaaagtggaaagggcagtttcttggttccacgtctatatgggcatcattagtgttactgaggaagtcgattcccgttgtattttatggattacttccccttaagaaattttttgattatataaataaatacatttatctttctcgtaagattatttctgtaaatttgccaagcaagaatttataaatacatatttatatgcaatctagggtaaacattgaaagcataggacactgtagtatttataatgactataaatgtgtcacaacttttttatttttatatttgaagtttttgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggAACG---GAAAGGAAAACGGGA-AA-A-AATCAGAAT-TTAGAATG-ATCAATGCGAC-TAAACCAGTAA-AA-AA------AAATCGGA----------AAAA----TTGCT--TTCATTCCA--TCAAAAT-CA-A-AAGT-TT-TG-GAGATTATTT-GCAAGCG----A----T-AAA---ACAATTT-TATA--------TTG--------------AA-T-
gi|26 : ggAGAAAATGGAA-CG-A-AATC-TAATTGTA-AATG-ATTAATGTAAT------T--TAA-AA-A----------TCGGG----------AGGGGGGG-GGATACTGCATTTTAA-TCGAAAT-AA-G-AA-T-TT-AG-GAAATTGTTT-GCAAGCA---------TTAAA---ACAATCT-TATAaatatt
gi|27 : AAG-CGATTCC-GTTGTATTTTATT-GAATTACCCCT-CC-----CCCTAAATAA-TTTTCTAATGATATAAAAT----AATACATTTGTCTTTCT
gi|28 : ggcacaatatagtgac--T---TACATA-------------------------TG----T-----AGC------------------G------GCAG--CC-GA-C-AC--CTGT--G----GGTTAAG-AATGGA----------AAGA---ACA---CAC-----AGGCCT-----------AT----ATCCCCCtttgtacgt
gi|29 : aatgacgaagtg--GA-C-AC--TTAT--G----GGTAGAG-AATGGA----------AGGA---ACG---CAC-----CGGGTTAATGTAT----AT----ATATGTGCCCCTCCC-CGC-CC--------CCttatttgtggcaaaacg
gi|3 : gaaagGA---ACA---CAC-----AGGGTT--TGTA------C----ACCCCCCCCCC-------------------CCCC-TTGT------T-TTTGGA-A-CA-AAACGTC-TTTAAATCAA--CACA------------CATGCCA--GTG-T--GGTA--TGT-Aattttcatgttgacaaaacgac
gi|4 : GACAT-GTAGCTATTTATA-ATTACT--TTTAAATGTGACTAACAACTTTTTTTATTATTTATATTGAAAGTTTTtataagtcaacaagttttaacatcatcttttttaactaacaaggtcttcgtgtccgcagcactgcaatcctgaatagtaggctagatatttctaatctaaatacatgtacgtgtatcttatcactagattaataatggaaagaccttgtaattccactaaaacataaattctctgttaatattctaactatttcatacatcatgaaatagatttaataattcctttcaaaaggatcataaattccattttctttctttggaggggtggggtggggggctattgttactcttttatttccttttgttattgaattttttttttttcaccctctgtatcttgtaggggtcaaccagttcatgtacgtacattcacttttcataaatcgatctcaaatggggcaaacctttcacataccggattcgctcgctttagaattcaatatgatagataataattattatatcaagtgcagaactaaaatcaaattccatttaatatcgtcttaaaatatcccattcgattaaaagcaaattcgattaaagaaggctatgttagatggaaatcgttcaaaaattatcattctatctttttcaatatatatagatagactatcataa
gi|4 : CTGTCACATG-TTTCACATGT--TCATTAAATTGACTGAGTCGGAAAGA--CTG-ATGTGTTCCTCTTTAAATCT--------AATAATGCAAAAACGGTG-TATGTTTAAACGC-TGAACAGAATATGAAAACG-ACAATC-GAA--GTA-AATGTAT-------ATGTAGTTT--TAA-CA-AATACTAAAACTCGGG----------AGAGGGGGTG----CTTCATTTTA--TCGAAAT-CA-ACAA-T-TT-AG-GAATTTGTTT-AAAAGCA----T----TGAAA---A-AATCT-TATAT-------TTG--------------AA-T-T-------------TCTTACAGCATAAATTAA-AA---C-------G-TATA------TCAA-A---TG------C-TTGTTA-------T-CAG-AA-TATT---TACATA-AAGA-ATCT---------------TGT---TT----AAC------------------GC---A-GCAG--C--GACC-AC--TTAC--G----GGCA-AG-AACACA-----CCCCAGGAA---ACA---CAT-----AG---T--TGTA-------------------------T-CCC-CC--------CCCC-CCCT------T-TCCGGA-C-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GCA-T--GG-A--CGT-AG-AG-TC-GGGT-GGGG---AAGTTACTGATA--TATTT----A-C-TATA-G-TATATAATTGTAC--------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGAGGGGGGtcttggtcaggaaatatatatcttcaataacaatcctcattaaaactgtcacatgtttcacatgttcattaaattgactgagtcggaaagactgatgtgttcctctttaaatctaataatgcaaaaacggtgtatgtttaaacgctgaacagaatatgaaaacgacaatcgaagtaaatgtatatgtagttttaacaaatactaaaactcgggagagggggtgcttcattttatcgaaatcaacaatttaggaatttgtttaaaagcattgaaaaaatcttatatttgaatttcttacagcataaattaaaacgtatatcaaatgcttgttatcagaatatttacataaagaatcttgtttaacgcagcagcgaccacttacgggcaagaacacaccccaggaaacacatagttgtatcccccccccccctttccggaccaaacgtctttaaatcaaaacacatgacagcatggacgtagagtcgggtggggaagttactgatatatttactatagtatataattgtacttacaataaatatgaccacaagaaaggggggaggggggtg
gi|5 : gacatgtagctatttataattacttttaaatgtgactaacaactttttttattatttatattgaaagtttttcttggtcaggaaatatatatcttcaataacaatcctcattaaaaAACTCTCTT-ATC-T----------AGTCTTATAATGACGCAATTACTTGAAATCATA------------GTT--CTGAGTCG-AAAGATTCTG-ATGTGTTCC--------TCTTTTAAATTAATAATGGCAAAACGGTGAT-TGTTTAA-CGCCTGAACAGAATATGAAA-CG-ACAATC-GAA--GTA-AATGTATT------ATGTAGTTT--TAACAA-AATACTAAAACTCGGG----------AGAGGGGGC---TGCTTCATTTT-A-TCGAAATCCA-C-AA-T-TT-AGCGCATTCGTT----AAAGA----T----T--GA---ACAATCT-TAT-T-------TTGCTTCTATAGACATAAA-T-TA------------C---------------AA-AA---G-------GCTATA------TCAC-A---TG------C-TTGT-A-------T-CAG----T--TTAGTACATA-AAGATACCT---------------TGT---TT----AAC------------------G----AGGCAGCAC--GA-C-AC--TTAC--G----GGCAACGAAACACACCCCGC----AGGA---ACA---CAC-----AGGTGT--TGTA-----------------------------T-CC--------CCCC-CCCT------T-TCCGGA---CA-AA-CGTC--TTAAATC----AACA------------CATGACA--GCA----GG-A--CGT-AGTAG-TCGGGG-GGGGG---AAGTTACTGA-T--AATTT----G-CTTATA-G-TATAT-AAT-TA-G-------------------TTACA--CAATA----TGACCACA---AGAAA----GGGGGGGAGGGGGGTG------TAAATC-----CGCCTATtg
gi|6 : a-GTAG--C--GA---AC--CTAT--G----AGTAGTG-AATAGA----------AAGA---ACA---CAC-----ATGATT--TAT------AT----GCCCCGCTCCCTCTT-aaactaacatgtgcttgaggccgggcggatgaagaaaactgtgaattaatgggctgtgtttgcctatttccaggttcacaag
gi|7 : ACA-AAGA--------------------TG----TT----GGT------------------G----A-ACAG--C--GA-C-AC--CTAT--G----AGTAGAG-AATGGA----------AAAA---ATA---CAT-----ATGGTC--TATATCTGTACATGTACCCCCTCCCTTTCT-Cattgcaaagcgtctttaatgcacatgcatttacttatagatagtatgtagtgtttgcacttacaacaggttaaaacaacgataatcatgatctcattaagttaaacatatcgtatttgatattttgaattaatggatactgattgatcacaatacttcaatcttaaataggcgaaaacttctggcatctaaatatttgtgcatgaatcttacacgtgtacatgtattatttagattaagaatgagatgatattttaattctactcaaaaacaaattctcaattagccttttacctctttcatatatttttttaaataaatctgccaattactatagtcataaacttcacctccgttttcatttactctgtttcaatcttttctgctgtatctcttggggttcaacactaatccgcaaccaaggataacggtgcatgtacgaacgttcactttacataaattgatccaaaaaagaggcaaaccttttataatttttggacacgtttgcctcaa
gi|8 : agttttacagtaagctattgTCCAAATCAGCCAATCAAAATCAAGAAATCCAATACT-CAAA-TTACCTATT-------AGTAGTTA--ATAGACCCAAGCAGCATGATGAT-TTGCGGTATGAAAATACATATTAGTT-GTAGGGGGAAATGATTAATATTACTG-AAAGTGT-CAGTTGT-AGAAAAAAAAGGTAGGAGAAAGGGCAGGTTTCTTGGTTCCACGTGTA-AT-GGCA-CATTAGGGT----TATGAGGAAAGTCGATTCC-GTTGTA-TTTA-T-GAATTA---TT-CCTTCCACCTTAAG--A-TTTTTAGATTA-ATAAAATATAAAATACATTTATCTTTCT-GTAGATAAA-TATTTTCTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAA-ATACAACTTTA-ATGCAAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAGATATTTATAGATGACCTATT-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTGAAAGTTTTgtggcaagacaaccatgtatttaaacataatacagagtacaacaggttgtgtggtatgtataaaacaacggtgattcatgattttattttaaaagccaacaagacaaacatcttgtgtgtttttttatttattataattgtgtgtagtttatcttatattactaatgaagactgggtgtccgcagcactcaatcctacatgtactgtaagtaggttaaagcatttggtagtttaactctaatctaaatacttttcgagtctttttagtaataattggattaaatataggtataaatttcatcttagttttcattggttctgtttcagttgttttcccccgctgtatatctctttggtttcaacattaatcagcaggataccagtacatttacgaacctcccctttccataaattgatcctaaacgatgtaagcctt
gi|9 : aatcccagattcaagatatcaatA-A---TG------TATTTT-A-------TTCAG-AA-T--T---TAGA------A-A-TT---------------TG----TTTACAAAC------------------GTGAGA-GCAG--C--GA-C-AC--TTGC--A----GGCAG-------------------GGAA---ACA---CA------AGGGTT--TGTA-----AC------CCCCCCCCCTCCT-CGC-CCATTCACCACCCCACCCTCACCGTT-TCCGGA-G-CA-AA-CGTC-TTTAAATCAA--CACA------------AATGACA--Gtgttgatttggaaataatgtttcattttaacacctttgaaat
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTTTTCTTCGCTGTACCTCTTCGGGTTCAACACTAATCCGCAGGATACCGTTTCATACGAACTTTAACTTCACATAAATTGATTCCAAATGAGGCAAACCTCTTATACACATCGGATTCGTTTGCTTTTTCAAAAATATCTGTGCTGTATAATTATATATTGAACCAAATTGAAATTCAAGTTCAATTATCTTGAAAATATCCAGTTCGATTAAAAGCCAATTTGATTTTTTTAAAAGCTATGTTAGGGGGACATTGTTGGAAAAATTATTTTGTCTTTTCGATGTACGTTGCTTC
Unaligned ( gi|16 ): GTTCAACACAGGTGCACAGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACCTTTCAGACACTTTGCGCGTATTCGCTTTAAAATTTGATGTGGTACATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGATAATAAGCGAATTTCATTAAGATAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|17 ): TCAACACGGTGCAACGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACTTTCAGACACTTTGGCGCGTATTCGCTTTAAAATTTGATGTGTACAATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGGATAATAAGCGAATTTATTAAAGTTAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|20 ): ATGATATGTACAGCAAAACGAGTGTTGCTAACGCGGAACGAAAAACGGAACGGGACGGAAAACGGAACGAAATTTAAGAATTAAAATTATTGATGTTGCTAAGATAACACCAAACTCGAGGAAATGTGCTTTATTTTCATATAGATAAAAGTTTTTGATGTATATGTATTTACACATAACACAGTATGTGTATACTTACAACAGGGAGTGTGGTA
Unaligned ( gi|21 ): TGACCGCAGCACTCATATTCCAAATAGACTAGGACTTCTGGCAGTTTATTTTTAATTCAAATACTTGTATCTTACATGTATCATTCAGATGAATGAGATGACCTTTAAATTCCATTCAAATATACATGTAAATTCTCTGTCAGTCTTTTAGATATTTCATATTATATTTGTTAATTTCGTTTAATAGAAATATAAATTTCACCTTC
Unaligned ( gi|22 ): CAAAATAAAAATTTTGGTTTTAATTACAAGCGGTGAAACAATTCTATGATTAAATGCTACAGCATGATTTAATTAAAAGGTAAGTGAAATGTTTGTAGACCTGTATAGAGTTTACAGAGCAATTTACAAGAATCTTGAAATTTCAGTATTGATAAAATGTTTAAAAGCAGCAATACCTGTGAGTAAAAA
Unaligned ( gi|23 ): GCTGTGTCTCTTCAGGTCCAACACTAATCCGCAGTTTAAGATACAGGTGCATGTATACCAACTTTCACAACACATAAATTTATCTCAAATAAACAAACATTTAAAACATTTTTGACCCGTGTGTTTTAAAATTTATGCGACACATAAATGTATATGTTCCAGACGTTTAACTGAATTCAGATTCAACTT
Unaligned ( gi|24 ): GGTGCTGCTAAACGTGAAGAAAACCGAAAGAAACGGAAAATGGAAAACAATTTAAGAAATGAATTAAAATTGTTAATATAGATAAGATAACACCAACAATAGGAAAAATATGTTTTATATCAATATAAATAAAATGAAAGGAATTTGTTTATAAGCAGT
Unaligned ( gi|30 ): CAAGACAAGTAGATTGTTGGTAAAACACGGAACGGAAAGCGGAATGGAACGCAATTTAAGAATTAAAATAATTAATGTAGCTAAGATGCTACC
Unaligned ( gi|31 ): GAAACAGGTAAAATTTGTCGATTGAGAACAGGCTTTGAGATGAAGAAATGTGAATTATGGGCTGTTTGCTATTTTCACAA
Unaligned ( gi|32 ): CCTACGCCTTGTGGGGGAAATATTTCAGTACATGTATGTAGATTATTCA
Alignments
lowQualScore : 2222 777777777777777777777777777777777777777777777777777777777777777777 11 9999999999999999999 222222 1 1 1 22 11 1 1 222 222 1 1 33333 1 1 2 11111 22222 2222 1 333 1 33333 22 11 11 1 2 1 1111 11 1 88888888888888888 1 11 1 333333333 11 55555555555555555555555555555555555555555555555555555 11111 111 55555555555555555555555555 111111 11111 33333333333 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222222222222222222 2222222222222222 3333333333333333333 111111 111 333333333333 1 111 111 33333333 1 1 888888888888888888888 2222 111 1111 333333 33333
lowQualScore : 4444 555555555555555555555555555555555555555555555555555555555555555555 7 88 7 4444444444444444444 000000 3 3 6 2 7 00 7 88 3 6 7 6 3 333 666 3 7 6 3 77777 0 0 3 0 88888 55555 3 3 3 0000 1 0 111 3 33333 7 55 7 88 7 88 2 0 0 4444 33 1 88 8 0 0 1 5 3 888 33333333333333333 0 3 88 3 7 999999999 7 1 6 6 6 7 00 44444444444444444444444444444444444444444444444444444 11111 5 777 2 2 33333333333333333333333333 8888 777777 3 3 33 3 22222 1 3 22222222222 777 0 4 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 33 66 5 33 6666 5555 77777777777777777777777 2 777 66666 33 4444444444444444 3333333333333333333 1 55 222222 4 1 444 4 8 4 66 000000000000 66 88888 8888 5 9 0 6 55 777 777 66666666 0 0 3 8 222222222222222222222 66 1111 3 777 4444 0 888888 33333
lowQualScore : .... .................................................................. . .. . ................... ...... . . . . . .. . .. . . . . . ... ... . . . . ..... . . . . ..... ..... . . . .... . . ... . ..... . .. . .. . .. . . . .... .. . .. . . . . . . ... ................. . . .. . . ......... . . . . . . .. ..................................................... ..... . ... . . .......................... .... ...... . . .. . ..... . . ........... ... . . ............................................................................................................................................................................................................ . .. .. . .. .... .... ....................... . ... ..... .. ................ ................... . .. ...... . . ... . . . .. ............ .. ..... .... . . . . .. ... ... ........ . . . . ..................... .. .... . ... .... . ...... .....
lowQualScore : 0000 000000000000000000000000000000000000000000000000000000000000000000 3 33 3 0000000000000000000 777777 3 3 7 0 3 77 3 33 3 7 3 7 3 333 000 3 3 7 3 00000 0 0 2 0 55555 00000 2 2 2 8888 2 0 000 3 33333 3 33 3 33 3 33 8 0 0 8888 88 0 88 0 8 8 0 0 7 000 77777777777777777 7 3 33 3 3 000000000 3 0 7 7 7 8 44 00000000000000000000000000000000000000000000000000000 44444 0 000 6 6 44444444444444444444444444 8888 777777 6 6 88 6 77777 2 6 22222222222 000 7 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 9 99 33 3 77 3333 7777 77777777777777777777777 5 888 22222 44 1111111111111111 0000000000000000000 1 33 888888 4 9 666 4 9 4 99 666666666666 99 44444 9999 7 2 0 5 88 555 000 00000000 0 0 2 8 555555555555555555555 55 2222 2 555 5555 7 333333 33333
consensus : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-----TTA----GTAGTT-ATAGACCCAAGC-GC-TTGTGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GTGGGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTT--TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTTAAACGC-GGAACGGAAAACGGAA-C--G-AC----AATC-GAAT-GTA-A-ATG-----ATTA-A---TG---ATGTAGTTT--TAA-AA--AACACCAAAAATCGGG----------AGA--GGGGGTG-ATGCTTCATTTTAA-TCGAAAT-CA-A-AA-T-TT-AG-GA-----ATTTGTTT-ACAAGCG----T----TTAAA---ACAATCT-TATAT-------TTG--------------AA-T-T-------------T---------------AA-AA---G-------G-TATA------TCAA-A---TG------C-TTGT-A-------T-CAG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------CGGA----AAGA----A-CA---CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT-C-C-CC--------CCCC-CCCT------T-TCCGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
Reference ( family-1084 ) : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-----CTA----GTAG---ATAGACCCAAGC-GC-TGGTGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GTGGGAGAAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGT-TT-CTGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGGTAAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTCC---T---CTAATAATGNAAAAACG-GTG-T-TGTTTAAACGC-TGAACAGAAAACGGAA-C--G-AC----AATC-GAAT-GTA-A-ATGT----ATTA-A---TG-CGATGTAGTTT--TAA-AA--AATACTAAAAATCGGG----------AGA--GGGGGTGGATACTTCATTTCAA-TCGAAAT-CA-G-AA-T-TT-AG-GA-----ATTTGTTT-ACAAGCG----T----TTAAA---ACAATCT-TATAT-------TTG--------------AA-T-T-------------T---------------AA-AA---G-------G-TATA------TCAA-A---TG------C-TTGT-A-------T-CAG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------CGGA----AGGA----A-CA---CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT-CCC-CC--------CCCC-CCCT------T-TCCGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
gi|1 : TACGAAAGCCAGGAAGCTT----GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAAGT-----TTA----A------ATAGATCCAAGC-GG-GTGTGT-TT-G-GGCGTGAAAATACATAT--GTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACA-TTGT-AGATAAAA---GTGGAA--AATGGCAG-TTTCTTGGTTCCACGTGCATGTGGGTA-CATTAGT-TT---GAGGAAAG-CGATTCT-GTTGTATTTTATAGAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATGTAAAATA---AATACATTTTACTTTCG-GTA---AAATATTT-CTGGTTTTT---TTTGCCATGCAAGAATTTATATAATTATACA--TTTATATCAAA--TCAAAGATAAATATAGAAAGCATAGGACATGGTAG-TATTTATA-ATGACTT--T-AAATGTG--TAACCACTTTTT--ATT-TTTATATTGAA-GTTTTGAAATGAT-CTGTCACGTGATCTCATAT-TAACCATT-------TCGAGTCG-AATGA--CTGGATG-----CTCTCC---T---CTAATAA--AAAAAACG-GTA-T-TGTTTACACGC-TGATCAGAAAATGGAA-C--G-A-----AATC-GAATAGTA-A-ATG-----ATCA-A---TG-CAATGTAGTTT--TAA-AA--AATACTAAAAATCGGGCGGGGGTGGGGGG--GGGGGTGGATACTTCATTTTAA-TCGAAAT-CA-G-AA-T-TT-AG-GA-----ATTTGTTT-GCAAGCA----T----TTAAA---ACAATCT-TATAT-------TTG--------------AA-T-T-------------T---------------AA-AA---G-------G-TATA------TCAA-A---TG------C-TTGT-A-------T-CAG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AAC------------------G----A-GCAG--C--GAT-AT--TTAC--G----GGCAAAGAA-------CACACCCCGGGA----A-CA---CAC-----AAGGTT--TGTA-----AC----ATCCCCCCCCCCCCTCCCC-CC--------CCCC-CCCT------T-TACGGA-G-CA-AA-CTTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGGAG-TCAGGGTGGGGG---AAGTTACCGAT--TAATTC----AGC-TATA-GTTATATACATGTACG-------------------TTACAATAAATA----TGGCCACA---AGAAAGAGGGGGGGGGGGGGGGGTGCGGGGCTAAATC-----CGCCTAT
gi|10 : AAAAATTAGG----------AAA--A----T--ATATTTTATTTCAA-TCATAAT-CA-A-CA-TATC-AG-GA-----ATTTGTTT-ACAAGCGGTCCT----GTAAACTTGTTATAC-TATATAGTA---TTG--------------AAGG-T-------------T---------------GA-AA---T-------G-TA----------AG-AGTTTA------C-TCGT-G-------T--AG-CG-T--T---T-TACA-AGGA-T-CTTTTGACGGCTCCGGGTG----TT----AGC------------------T----A-GTCG--T--GAC-AC--CTATAAG----GGTAGAGAA-------T-GA----GGAA----A-CACCCCAC-----AGGGTT--T--------------ACCCCCTACCTTCCT-Cg
gi|11 : aagaaatagaaaaaaataagtatagctacatgtacaggtaacaccaG-GCG-T-TGCTAAAACGT-GGAACGTAAAACGGAA-CTGG-AC----G----GAAT-ATA-ACATTG----ATTATA---T-----TGTAGCTttgtgaccaaacctttaacatatatatgtacatgcttttacacatttataaagcagtgtatgagtgcctttacaatagggagtgtggtacatgtatgtataaagaacgata
gi|11 : aaatgg-------T-CGG-AA-T--T---CA-----AAAA-A-GT---------------T-----TT----AGC------------------A----A-ACAG--C--GAA-ACCTTTGC--GATTGGGTAGAGAG-------TGGA----AAGA----A-TA---CAC-----ATGGTT--T--------AC----CCCCTCCCCCCTTCT-Caatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataatttcggaattcaaaaaagttttagcaaacagcgaaacctttgcgattgggtagagagtggaaagaatacacatggtttaccccctccccccttctcgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|12 : aaatggggcgttgctaaaacgtggaacgtaaaacggaactggacggaatataacattgattatattgtagctaatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataattAACGGGA-C--GGAC----AAT--GAA--ATA-A-A-AC----ACTA-A--------ATTTAGAAT--GAA-AAT-AACACCAAGAATTGGG------------------GGTATATGCTTTATTTCAA-TCAAAAT-TA-A-CA-T-TTAAA-GA-----CTTTATTT-ACAAGTG---------CTAAA---ACAATATATATATAATTATATTG--------------AA-TAT-------------T---------------GATAATATGAATATTTG-TATAACTAT-TTAA-G---CG------T-TTAT-A---------CAGCGG-T--T---TAC-TAGAATA-A-AT---------------TG----AC----AGC------------------G----A-GCTG--C--GATAAC--TT-T--G----GGTAGAGAA-------TGGA----AATAATGTA-CATG-TAC-----ATGATT--TATA-----A-----------CCGCCTCAT-CCTACC--------CCAC-TCCT------T----GTG-G-CA-AA--ACC-TTTCAATgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|13 : ggG-GTG-T-TACTAAAACGC-GGAGCAGAAA--------------------TT---AT-----A-ATG-----ATTA-A---TG------TAGT-----AA-AGGTAACACCAAAAATCTGG----------AAA---------CATGTTTTACTTTAA-TCAAAAT---------T-TT-AG-GAC----ATT--TTT-AAAAGCG---------GCAAA---ACAA-CT-TAGAG-------CTA--------------AA-T-T-------------T---------------acatgtatgtagactatttacacgtaatacagga
gi|13 : tggaattcagaaatatatacg-CAG-AAGTG-T---TACATA-------------------------TG----T-----AGC------------------G----A-GCAG--C--GAC-AC--CTGT--G----GGTTAAGAA-------TGGA----AAGA----A-CA---CAC-----AGGCCT--T--------AT----ATCCCCCgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgacagaagtgttacatatgtagcgagcagcgacacctgtgggttaagaatggaaagaacacacaggccttatatcccccttatttgtggcaaaacgt
gi|14 : tggaattcagaaatatatacgggtgttactaaaacgcggagcagaaattataatgattaatgtagtaaaggtaacaccaaaaatctggaaacatgttttactttaatcaaaattttaggacatttttaaaagcggcaaaacaacttagagctaaatttgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgaATAATTCATTTC----CAAAAT-------A-T-TT----GA-----ATTC---T-ACATTCA----TGATATTAAA---AGA---T-TAAAT-------CGG--------------AA-T-C-------------T---------------A---------------G-TATAAGAACTTTAACA---TGAAGAATC-TTGA-AAAAT---T-CGG-CA-T--T----AT-TG-GAGA-A-AT---------------TG----TTTTAAAG-------------------G----A-CCAG--CCGAAC-AC--T-GC--G----GGCAAAGTA-------T------------------A---CAT-----AAGGTT--TGTA-----AC----ACAACACCCACCCCT-CTC--------------------------T-TCCGGA-G-CA-AAGCGTCTTTTAAATCGAGGAATAAATTAATATTACCATGACA--GC-ATGGGG-G--CGT-AGttatttgtggcaaaacgt
gi|18 : tcttttaaaatcaatgagccG--------------AA-T-T-------------T---------------AG-AA---A-------G-CGTA------T--------TG------C-TTTT-AAGAAATGT-CGG-TA-T--C---GACATA---TG-A-CT---------------TA----T-------C------------------G----A-GAAG--C--GAC-AA--TCGT--G----AGCAGAGGA-------CGTA----AAGC----A-CA---CACAGTTAAGGGTT--TATA-----TC----TCCCTCTCgttccgttggagggcaaggggtaatccccagtttttgaaaagtaagttatgtga
gi|19 : aatcggggaaaatatgctgtactagtttaaggaatttgataacaggtgtttaacaagttagattaagagactgtaaaataaatttattttgataagctattctaattattatgagaCCT-CTC-CT--------CCAT-TTTT------TATACGGATGTCA-AA-CTTC-CT-AAATCAA--AACA------------CATGCCACTGCAAT--GG-ATCCGTCAGTAGCTCGGGGTGGGGGGTAAAGTTAGTGATTCTAATTTTCCAA-CATATACG-TTAATAAATCTACGACCCTTCTGTAACTGGATTTTAC-ATAAATACTACTGACC-CACTCAGACAGA----GGGGGGGTGGGGCT------TAAATTTTTCACGCCTATgtggcaaaacgtct
gi|2 : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCA-TCAAAAACAAGAATCC--ATACTTCAAATT-----CTCCTTTGTAGTT-ATAGACCCAAGC-GC-TTGTGAATT-GCGG-ATGAAAATAC-TAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTAAAGTTGTCAGAAAAAA---GTGG---AAAGGGCAG-TTTCTTGGTTCCACGTCTATATGGGCATCATTAGTGTTACTGAGGAAGT-CGATTCCCGTTGTATTTTAT-GGATTAC---TTCC-----CCTTAAGAAATTTTTTGATTATATAAA-TA---AATACATTTATCTTTCTCGTAAG--ATTATTT-CTG-----TAAATTTGCCAAGCAAGAATTTA--TAAATACATA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACTGTAG-TATTTATA-ATGACTA--T-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTTGAAGTTTTatgacataaatgttgct
gi|2 : gAATTGGG----------A-ATTGGGGGT--------CATTTAAAATCGAAAT-AAAG-AA-A-TT-AG-GA-----ATTTGTTTTAAAAGCG----T----T-GAA---ATTATCT-GATAT-------TTG--------------AA-T-TCTACAGCATGAATT---------------AA-AA---G-------G-TAAA------TCAA-A---TG------C-TTGT-A-------T-AAG-AG-T--T---TACATG-AAGA-ATCT---------------TGAACATC----GGCCTTGGGTAAAATTGTTAAG----A-GCAG--C--GAC-AC--TTG---A----GGCAAAGAA-------CT----------------CA---CA--------AGTT--TGTA-----AC----ACAACACCCCCT-------------------------CT------T-TTCGGA---CACAA-TGTC-TTTAAATCAA--CACAC-----------CATGACA--GC-TT--GG-G--CGT-tgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggtcatttaaaatcgaaataaagaaattaggaatttgttttaaaagcgttgaaattatctgatatttgaattctacagcatgaattaaaaggtaaatcaaatgcttgtataagagtttacatgaagaatcttgaacatcggccttgggtaaaattgttaagagcagcgacacttgaggcaaagaactcacaagtttgtaacacaacaccccctcttttcggacacaatgtctttaaatcaacacaccatgacagcttgggcgt
gi|20 : gtacgaaagccagaaggctcattcgcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatccaaatcagccatcaaaaacaagaatccatacttcaaattctcctttgtagttatagacccaagcgcttgtgaattgcggatgaaaatactatagtttgtagggggaaatgatatatactggaaagtgtaaagttgtcagaaaaaagtggaaagggcagtttcttggttccacgtctatatgggcatcattagtgttactgaggaagtcgattcccgttgtattttatggattacttccccttaagaaattttttgattatataaataaatacatttatctttctcgtaagattatttctgtaaatttgccaagcaagaatttataaatacatatttatatgcaatctagggtaaacattgaaagcataggacactgtagtatttataatgactataaatgtgtcacaacttttttatttttatatttgaagtttttgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACGAGTG-T-TGCT--AACGC-GGAACGAAAAACGGAA-CGGG-ACGGAAAACG-GAAC-G-A-A-ATTTAAGAATTA-AAATTATTGATGT--TGC--TAA-GAT-AACACC-AAACTC--------------GA--GGAAATG--TGCTTTATTTTCA-TATAGAT-AA-A-AG-T-TT-TT-GATGTATATGTATTT-ACA
gi|25 : atgatatgtacagcAACG---GAAAGGAAAACGGGA----A-AA----AATCAGAAT-TTAGA-ATG-----ATCA-A---TG-CGAC-TAAACCAGTAA-AA--------AAAAATCGGA----------AAA------ATTGCT--TTCATTCC-A-TCAAAAT-CA-A-AAGT-TT-TG-GA-----GATTATTT-GCAAGCG---------ATAAA---ACAATTT-TATA--------TTG--------------AA-T-cataacacagtatgtgtatacttacaacagggagtgtggta
gi|26 : ggAGAAAATGGAA-C--G-A-----AATC-TAATTGTA-A-ATG-----ATTA-A---TG------TAATTT----------------AAAAATCGGG----------AGG--GGGGG-GGATACTGCATTTTAA-TCGAAAT-AA-G-AA-T-TT-AG-GA-----AATTGTTT-GCAAGCA---------TTAAA---ACAATCT-TATAaatatt
gi|27 : AAG-CGATTCC-GTTGTATTTTATTGAATTACCCCT-CC-----CCCTAAATAATTTTCTAATGATATAAAAT----AATACATTTGTCTTTCT-
gi|28 : ggcacaatatagtgac--T---TACATA-------------------------TG----T-----AGC------------------G------GCAG--CC-GAC-AC--CTGT--G----GGTTAAGAA-------TGGA----AAGA----A-CA---CAC-----AGGCCT-----------AT----ATCCCCCtttgtacgt
gi|29 : aatgacgaagtg--GAC-AC--TTAT--G----GGTAGAGAA-------TGGA----AGGA----A-CG---CAC-----CGGGTTAATGTAT----AT----ATATGTGCCCCTCCC-CGC-CC--------CCttatttgtggcaaaacg
gi|3 : gaaagGA----A-CA---CAC-----AGGGTT--TGTA------C----ACCCCCCCCCC-------------------CCCC-TTGT------T-TTTGGA-A-CA-AAACGTC-TTTAAATCAA--CACA------------CATGCCA--GT-GT--GGTA--TGT-Aattttcatgttgacaaaacgac
gi|4 : GACAT-GTAGCTATTTATA-ATTACTT--TTAAATGTGACTAACAACTTTTTTTATTATTTATATTGAAAGTTTTtataagtcaacaagttttaacatcatcttttttaactaacaaggtcttcgtgtccgcagcactgcaatcctgaatagtaggctagatatttctaatctaaatacatgtacgtgtatcttatcactagattaataatggaaagaccttgtaattccactaaaacataaattctctgttaatattctaactatttcatacatcatgaaatagatttaataattcctttcaaaaggatcataaattccattttctttctttggaggggtggggtggggggctattgttactcttttatttccttttgttattgaattttttttttttcaccctctgtatcttgtaggggtcaaccagttcatgtacgtacattcacttttcataaatcgatctcaaatggggcaaacctttcacataccggattcgctcgctttagaattcaatatgatagataataattattatatcaagtgcagaactaaaatcaaattccatttaatatcgtcttaaaatatcccattcgattaaaagcaaattcgattaaagaaggctatgttagatggaaatcgttcaaaaattatcattctatctttttcaatatatatagatagactatcataa
gi|4 : CTGTCACATG-TTTCACATGT--TCATTAAATTGACTGAGTCGGAAAGA--CTG-ATGTGTTCCTCTTTAAAT---CTAATAATGCAAAAACG-GTG-TATGTTTAAACGC-TGAACAGAATATGAAAAC--G-AC----AATC-GAA--GTA-A-ATGT----AT------------ATGTAGTTT--TAA-CA--AATACTAAAACTCGGG----------AGA--GGGGGTG----CTTCATTTTA--TCGAAAT-CA-ACAA-T-TT-AG-GA-----ATTTGTTT-AAAAGCA----T----TGAAA---A-AATCT-TATAT-------TTG--------------AA-T-T-------------TCTTACAGCATAAATTAA-AA---C-------G-TATA------TCAA-A---TG------C-TTGTTA-------T-CAG-AA-TATT---TACATA-AAGA-ATCT---------------TG----TTT---AAC------------------GC---A-GCAG--C--GACCAC--TTAC--G----GGCA-AGAA-------CACACCCCAGGA----AACA---CAT-----AG---T--TGTA-------------TCCCCC----------------------CCCC-CCCT------T-TCCGGA-C-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AG-AG-TC-GGGT-GGGG---AAGTTACTGAT--ATATTT----A-C-TATA-G-TATATAATTGTAC--------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGAGGGGGGtcttggtcaggaaatatatatcttcaataacaatcctcattaaaactgtcacatgtttcacatgttcattaaattgactgagtcggaaagactgatgtgttcctctttaaatctaataatgcaaaaacggtgtatgtttaaacgctgaacagaatatgaaaacgacaatcgaagtaaatgtatatgtagttttaacaaatactaaaactcgggagagggggtgcttcattttatcgaaatcaacaatttaggaatttgtttaaaagcattgaaaaaatcttatatttgaatttcttacagcataaattaaaacgtatatcaaatgcttgttatcagaatatttacataaagaatcttgtttaacgcagcagcgaccacttacgggcaagaacacaccccaggaaacacatagttgtatcccccccccccctttccggaccaaacgtctttaaatcaaaacacatgacagcatggacgtagagtcgggtggggaagttactgatatatttactatagtatataattgtacttacaataaatatgaccacaagaaaggggggaggggggtg
gi|5 : gacatgtagctatttataattacttttaaatgtgactaacaactttttttattatttatattgaaagtttttcttggtcaggaaatatatatcttcaataacaatcctcattaaaaAACTCTCTT-ATC-T----------AGTCTTATAATGACGCAATTACTTGAAATCATA----------G--TT--CTGAGTCG-AAAGATTCTG-ATGTGTTCCTCTTT---TAAATTAATAATGGCAAAACG-GTGAT-TGTTTAA-CGCCTGAACAGAATATGAAA-C--G-AC----AATC-GAA--GTA-A-ATGT----ATT-----------ATGTAGTTT--TAACAA--AATACTAAAACTCGGG----------AGA--GGGGGC---TGCTTCATTTT-A-TCGAAATCCA-C-AA-T-TT-AGCGC-----ATTCGTT----AAAGA----T----T--GA---ACAATCT-TAT-T-------TTGCTTCTATAGACATAAA-T-TA------------C---------------AA-AA---G-------GCTATA------TCAC-A---TG------C-TTGT-A-------T-CAG----T--TTAGTACATA-AAGATACCT---------------TGT---TT----AAC------------------G----AGGCAGCAC--GAC-AC--TTAC--G----GGCAACGAAACACACCCCGC----AGGA----A-CA---CAC-----AGGTGT--TGTA-----------------------------T-CC--------CCCC-CCCT------T-TCCGGA---CA-AA-CGTC--TTAAATC----AACA------------CATGACA--GC-A---GG-A--CGT-AGTAG-TCGGGG-GGGGG---AAGTTACTGA---TAATTT----G-CTTATA-G-TATAT-AAT-TA-G-------------------TTACA--CAATA----TGACCACA---AGAAA----GGGGGGGAGGGGGGTG------TAAATC-----CGCCTATtg
gi|6 : a-GTAG--C--GA--AC--CTAT--G----AGTAGTGAA-------TAGA----AAGA----A-CA---CAC-----ATGATT--TAT------AT----GCCCCGCTCCCTCTT-aaactaacatgtgcttgaggccgggcggatgaagaaaactgtgaattaatgggctgtgtttgcctatttccaggttcacaag
gi|7 : ACA-AAGA--------------------TG----TT----GGT------------------G----A-ACAG--C--GAC-AC--CTAT--G----AGTAGAGAA-------TGGA----AAAA----A-TA---CAT-----ATGGTC--TATATCTGTACATGTACCCCCTCCCTTTCT-Cattgcaaagcgtctttaatgcacatgcatttacttatagatagtatgtagtgtttgcacttacaacaggttaaaacaacgataatcatgatctcattaagttaaacatatcgtatttgatattttgaattaatggatactgattgatcacaatacttcaatcttaaataggcgaaaacttctggcatctaaatatttgtgcatgaatcttacacgtgtacatgtattatttagattaagaatgagatgatattttaattctactcaaaaacaaattctcaattagccttttacctctttcatatatttttttaaataaatctgccaattactatagtcataaacttcacctccgttttcatttactctgtttcaatcttttctgctgtatctcttggggttcaacactaatccgcaaccaaggataacggtgcatgtacgaacgttcactttacataaattgatccaaaaaagaggcaaaccttttataatttttggacacgtttgcctcaa
gi|8 : agttttacagtaagctattgTCCAAATCAGCCAATCAAAATCAAGAAATCCAATACT-CAAATTACCTATTA----GTAGTTAATAGACCCAAGCAGCATGATGA-TTTGCGGTATGAAAATACATATTAGTT-GTAGGGGGAAATGATTAATATTACTG-AAAGTGT-CAGTTGT-AGAAAAAAAAGGTAGGAGAAAGGGCAGGTTTCTTGGTTCCACGTGTA-ATGG-CA-CATTAGGGTT-ATGAGGAAAGTCGATTCC-GTTGTATTT-AT-GAATTAT---T-CCTTCCACCTTAAGA--TTTTTAGATTA-ATAAAATATAAAATACATTTATCTTTCT-GTAGATAAATATTTTCTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAA-ATACAACTTTA-ATGCAAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAGATATTTATAGATGACCTATT-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTGAAAGTTTTgtggcaagacaaccatgtatttaaacataatacagagtacaacaggttgtgtggtatgtataaaacaacggtgattcatgattttattttaaaagccaacaagacaaacatcttgtgtgtttttttatttattataattgtgtgtagtttatcttatattactaatgaagactgggtgtccgcagcactcaatcctacatgtactgtaagtaggttaaagcatttggtagtttaactctaatctaaatacttttcgagtctttttagtaataattggattaaatataggtataaatttcatcttagttttcattggttctgtttcagttgttttcccccgctgtatatctctttggtttcaacattaatcagcaggataccagtacatttacgaacctcccctttccataaattgatcctaaacgatgtaagcctt
gi|9 : aatcccagattcaagatatcaatA-A---TG------TATTTT-A-------TTCAG-AA-T--T---TAGA------A-A-TT---------------TG----TTTACAAAC------------------GTGAGA-GCAG--C--GAC-AC--TTGC--A----GGCAGGGAA-----------------------A-CA---CA------AGGGTT--TGTA-----AC------CCCCCCCCCTCCT-CGC-CCATTCACCACCCCACCCTCACCGTT-TCCGGA-G-CA-AA-CGTC-TTTAAATCAA--CACA------------AATGACA--Gtgttgatttggaaataatgtttcattttaacacctttgaaat
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTTTTCTTCGCTGTACCTCTTCGGGTTCAACACTAATCCGCAGGATACCGTTTCATACGAACTTTAACTTCACATAAATTGATTCCAAATGAGGCAAACCTCTTATACACATCGGATTCGTTTGCTTTTTCAAAAATATCTGTGCTGTATAATTATATATTGAACCAAATTGAAATTCAAGTTCAATTATCTTGAAAATATCCAGTTCGATTAAAAGCCAATTTGATTTTTTTAAAAGCTATGTTAGGGGGACATTGTTGGAAAAATTATTTTGTCTTTTCGATGTACGTTGCTTC
Unaligned ( gi|16 ): GTTCAACACAGGTGCACAGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACCTTTCAGACACTTTGCGCGTATTCGCTTTAAAATTTGATGTGGTACATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGATAATAAGCGAATTTCATTAAGATAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|17 ): TCAACACGGTGCAACGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACTTTCAGACACTTTGGCGCGTATTCGCTTTAAAATTTGATGTGTACAATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGGATAATAAGCGAATTTATTAAAGTTAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|21 ): TGACCGCAGCACTCATATTCCAAATAGACTAGGACTTCTGGCAGTTTATTTTTAATTCAAATACTTGTATCTTACATGTATCATTCAGATGAATGAGATGACCTTTAAATTCCATTCAAATATACATGTAAATTCTCTGTCAGTCTTTTAGATATTTCATATTATATTTGTTAATTTCGTTTAATAGAAATATAAATTTCACCTTC
Unaligned ( gi|22 ): CAAAATAAAAATTTTGGTTTTAATTACAAGCGGTGAAACAATTCTATGATTAAATGCTACAGCATGATTTAATTAAAAGGTAAGTGAAATGTTTGTAGACCTGTATAGAGTTTACAGAGCAATTTACAAGAATCTTGAAATTTCAGTATTGATAAAATGTTTAAAAGCAGCAATACCTGTGAGTAAAAA
Unaligned ( gi|23 ): GCTGTGTCTCTTCAGGTCCAACACTAATCCGCAGTTTAAGATACAGGTGCATGTATACCAACTTTCACAACACATAAATTTATCTCAAATAAACAAACATTTAAAACATTTTTGACCCGTGTGTTTTAAAATTTATGCGACACATAAATGTATATGTTCCAGACGTTTAACTGAATTCAGATTCAACTT
Unaligned ( gi|24 ): GGTGCTGCTAAACGTGAAGAAAACCGAAAGAAACGGAAAATGGAAAACAATTTAAGAAATGAATTAAAATTGTTAATATAGATAAGATAACACCAACAATAGGAAAAATATGTTTTATATCAATATAAATAAAATGAAAGGAATTTGTTTATAAGCAGT
Unaligned ( gi|30 ): CAAGACAAGTAGATTGTTGGTAAAACACGGAACGGAAAGCGGAATGGAACGCAATTTAAGAATTAAAATAATTAATGTAGCTAAGATGCTACC
Unaligned ( gi|31 ): GAAACAGGTAAAATTTGTCGATTGAGAACAGGCTTTGAGATGAAGAAATGTGAATTATGGGCTGTTTGCTATTTTCACAA
Unaligned ( gi|32 ): CCTACGCCTTGTGGGGGAAATATTTCAGTACATGTATGTAGATTATTCA
Alignments
lowQualScore : 2222 777777777777777777777777777777777777777777777777777777777777777777 11 66666 1 1 1 1 1 1 22 11 1 1 222 333 1 1 33 1 1 2 11111 22222 2222 1 222 1 33333 22 11 11 1 2 1 1111 11 1 88888888888888888 1 11 1 3333333 44444444444444444444444444444444444444444444444444444444444444444444444444444444 555555555555555555555555 11111 3333333 7777777777777777777777777777777777777777777777777777777777777777777777777777 22222222222 11111 222222222222222222 555555555555555555555555555555555555555555555555555555555555555 22222222222222222 2222222222222222 2222222222222222222 111111 111 333333333333 1 111 111 33333333 1 1 888888888888888888888 2222 111 1111 333333 33333
lowQualScore : 4444 555555555555555555555555555555555555555555555555555555555555555555 7 88 7 11111 7 3 3 7 3 3 3 6 2 7 00 7 88 3 6 7 6 3 333 555 3 7 6 3 6 11 0 0 3 0 88888 55555 3 3 3 0000 1 0 999 7 3 33333 7 55 7 88 7 88 2 0 0 4444 33 1 88 8 0 0 1 5 3 888 33333333333333333 0 3 88 3 7 7777777 7 1 6 5 5 0 9 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555 3 0 4 444444444444444444444444 4 44 88 7 3 3 7 22222 3 1111111 777 4 8888888888888888888888888888888888888888888888888888888888888888888888888888 5 33333333333 5 3 22222 4 777 4 333333333333333333 7777 77 555 888888888888888888888888888888888888888888888888888888888888888 2 33 66 5 33 6666 5555 2 44444444444444444 5555 2 33 66666 1 33 4444444444444444 9999999999999999999 4 0 111111 666 444 4 8 4 66 000000000000 66 88888 8888 5 9 0 6 55 777 777 66666666 0 0 3 8 222222222222222222222 66 1111 3 777 4444 0 888888 33333
lowQualScore : .... .................................................................. . .. . ..... . . . . . . . . . . .. . .. . . . . . ... ... . . . . . .. . . . . ..... ..... . . . .... . . ... . . ..... . .. . .. . .. . . . .... .. . .. . . . . . . ... ................. . . .. . . ....... . . . . . . . . ................................................................................ . . . ........................ . .. .. . . . . ..... . ....... ... . ............................................................................ . ........... . . ..... . ... . .................. .... .. ... ............................................................... . .. .. . .. .... .... . ................. .... . .. ..... . .. ................ ................... . . ...... ... ... . . . .. ............ .. ..... .... . . . . .. ... ... ........ . . . . ..................... .. .... . ... .... . ...... .....
lowQualScore : 0000 000000000000000000000000000000000000000000000000000000000000000000 3 33 3 77777 3 3 3 7 3 3 3 7 0 3 77 3 33 3 7 3 7 3 333 777 3 3 7 3 7 77 0 0 2 0 55555 00000 2 2 2 8888 2 0 000 3 3 33333 3 33 3 33 3 33 8 0 0 8888 88 0 88 0 8 8 0 0 7 000 77777777777777777 7 3 33 3 3 7777777 3 0 7 7 7 4 1 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111 7 9 0 444444444444444444444444 0 88 77 3 6 6 3 77777 6 0000000 000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 22222222222 0 6 55555 5 888 4 222222222222222222 3333 99 888 111111111111111111111111111111111111111111111111111111111111111 9 99 33 3 77 3333 7777 6 55555555555555555 3333 5 44 22222 4 44 1111111111111111 3333333333333333333 0 7 555555 222 666 4 9 4 99 666666666666 99 44444 9999 7 2 0 5 88 555 000 00000000 0 0 2 8 555555555555555555555 55 2222 2 555 5555 7 333333 33333
consensus : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-CCC-TTAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GTGG-A-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGTG-ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCG----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT--C-CCC--------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
Reference ( family-1084 ) : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-----TTAGTAGTTA-TAGACCCAAGC-GCTTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GTGGGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTT--TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTTAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGTG-ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCG----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT--C-CCC--------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
gi|1 : TACGAAAGCCAGGAAGCTT----GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAAGT-----TTAA-----A-TAGATCCAAGC-GGGTG-TGT-TT-G-GGCGTGAAAATACATAT--GTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACA-TTGT-AGATAAAA---GTGG-A-AAATGGCAG-TTTCTTGGTTCCACGTGCATGTGGGTA-CATTAGT--T--TGAGGAAAG-CGATTCT-GTTGTATTTTATAGAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATGTAAAATA---AATACATTTTACTTTCG-GTA---AAATATTT-CTGGTTTTT---TTTGCCATGCAAGAATTTATATAATTATACA--TTTATATCAAA--TCAAAGATAAATATAGAAAGCATAGGACATGGTAG-TATTTATA-ATGACTT--T-AAATGTG--TAACCACTTTTT--ATT-TTTATATTGAA-GTTTTGAAATGAT-CTGTCACGTGATCTCATAT-TAACCATT-------TCGAGTCG-AATGA--CTGGATG-----CTCTCC---T---CTAATAA--AAAAAACG-GTA-T-TGTTTACACGCT-GATCAGAAAATGGAA-C--G----A-----AATC---GAATAGTA-A-A-T-----G-ATCA-A------TGCA----ATGTAGTTTTAA-AA--AATACTAAAAA-TCGGGCGGGGGTGGGGGG--GGGGGTGGATACTT-CATTTTAA-TCGAAAT-CAG-AA-T-TTAG-GA-----ATTTGTTT-GCAAGCA----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AAC------------------G----A-GCAG--C--GAT-AT--TTAC--G----GGCAAAGAA-------C--ACACCCCGGGA----A-CA--CAC-----AAGGTT--TGTA-----AC----ATCCCCCCCCCCCCTCCC-CCC--------CCCC-CCCT------TTA--CGGA-G-CA-AA-CTTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGGAG-TCAGGGTGGGGG---AAGTTACCGAT--TAATTC----AGC-TATA-GTTATATACATGTACG-------------------TTACAATAAATA----TGGCCACA---AGAAAGAGGGGGGGGGGGGGGGGTGCGGGGCTAAATC-----CGCCTAT
gi|10 : --AACACCAAAAAATTAGG----------AAA--A----T--ATATTT-TATTTCAA-TCATAAT-CAA-CA-TATCAG-GA-----ATTTGTTT-ACAAGCGGTCCTGTAAACTTGTTATAC-TATATAGTA---TTG--------------AAGG-----------------T-------------T---------------GA-AA---T-------G-TA---------AGAGTTTAC-TCGT--G-------T-------AG-CG-T--T---T-TACA-AGGA-T-CTTTTGACGGCTCCGGGTG----TT----AGC------------------T----A-GTCG--T--GAC-AC--CTATAAG----GGTAGAGAA-------TGAGGA----AACA----C-CC--CAC-----AGGGTT--T--------------ACCCCCTACCTTCCT--C-g
gi|11 : aagaaatagaaaaaaataagtatagctacatgtacaggtG-GCG-T-TGCTAAAACGTG-GAACGTAAAACGGAA-CTGG----AC----G------GAAT-ATA-ACATT-----G-ATTATA------T--------TGTAGCTttgtgaccaaacctttaacatatatatgtacatgcttttacacatttataaagcagtgtatgagtgcctttacaatagggagtgtggtacatgtatgtataaagaacgata
gi|11 : aaatgg-------T-C-----GG-AA-T--T---CA-----AAAA-A-GT---------------T-----TT----AGC------------------A----A-ACAG--C--GAA-ACCTTTGC--GATTGGGTAGAGAG-------T--GGA----AAGA----A-TA--CAC-----ATGGTT--T--------AC----CCCCTCCCCCCTTCT--C-aatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataatttcggaattcaaaaaagttttagcaaacagcgaaacctttgcgattgggtagagagtggaaagaatacacatggtttaccccctccccccttctcgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|12 : aaatggggcgttgctaaaacgtggaacgtaaaacggaactggacggaatataacattgattatattgtagctaatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataattAACGGGA-C--GG---AC----AAT----GAA--ATA-A-A-A-----C-ACTA-A--------------ATTTAGAATGAA-AAT-AACACCAAGAA-TTGGG------------------GGTATATGCTT-TATTTCAA-TCAAAAT-TAA-CA-T-TTAAAGA-----CTTTATTT-ACAAGTG----CT-AAA---ACAATATATATATAATTATATTG--------------AA-TA----------------T-------------T---------------GATAATATGAATATTTG-TATAACTATTTAAG---CGT-TTAT--A---------C-----AGCGG-T--T---TAC-TAGAATA-A-AT---------------TG----AC----AGC------------------G----A-GCTG--C--GATAAC--TT-T--G----GGTAGAGAA-------T--GGA----AATAATGTA-CATGTAC-----ATGATT--TATA-----A--------CCGCCTCATCCT--A-CCC--------CACT-CCTT------------GTG-G-CA-AA--ACC-TTTCAATgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|13 : ggG-GTG-T-TACTAAAACGCG-GAGCAGAAA-----------------------TT-----AT-----A-A-T-----G-ATTA-A------TG---------TAGT---AA-AGGTAACACCAAAAA-TCTGG----------AAA--------C-ATGTTT-TACTTTAA-TCAAAAT--------T-TTAG-GAC----ATT--TTT-AAAAGCG-----GCAAA---ACAA-CT-TAGAG-------CTA--------------AA-T-----------------T-------------T---------------acatgtatgtagactatttacacgtaatacagga
gi|13 : tggaattcagaaatatatacg-C-----AG-AAGTG-T---TACATA-------------------------TG----T-----AGC------------------G----A-GCAG--C--GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGCCT--T--------AT----ATCCCCCgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgacagaagtgttacatatgtagcgagcagcgacacctgtgggttaagaatggaaagaacacacaggccttatatcccccttatttgtggcaaaacgt
gi|14 : tggaattcagaaatatatacgggtgttactaaaacgcggagcagaaattataatgattaatgtagtaaaggtaacaccaaaaatctggaaacatgttttactttaatcaaaattttaggacatttttaaaagcggcaaaacaacttagagctaaatttgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgaAGA-A-AT---------------TG----TTTTAAAG-------------------G----A-CCAG--CCGAAC-AC--T-GC--G----GGCA----------------------AAGT----A-TA--CAT-----AAGGTT--TGTA-----AC----ACAACACCCACCCCT--C-TC------------------------TTC--CGGA-G-CA-AAGCGTCTTTTAAATCGAGGAATAAATTAATATTACCATGACA--GC-ATGGGG-G--CGT-AGttatttgtggcaaaacgt
gi|18 : tcttttaaaatcaatgagccataattcatttccaaaatatttgaattctacattcatgatattaaaagattaaatcggaatctagtataagaactttaacatgaagaatcttgaaaaattcggcattattggG--------------AA-T-----------------T-------------T---------------AG-AA---A-------G-CGTA-----T-------TGC-TTTT--AAGAAATGT-C-----GG-TA-T--C---GACATA---TG-A-CT---------------TA----T-------C------------------G----A-GAAG--C--GAC-AA--TCGT--G----AGCAGAGGA-------C--GTA----AAGC----A-CA--CACAGTTAAGGGTT--TATA-----TC----TCCCTCTCgttccgttggagggcaaggggtaatccccagtttttgaaaagtaagttatgtga
gi|19 : aatcggggaaaatatgctgtactagtttaaggaatttgataacaggtgtttaacaagttagattaagagactgtaaaataaatttattttgataagctattctaattattatgagaCCT--C-TCC--------TCCA-TTTT------TTATACGGATGTCA-AA-CTTC-CT-AAATCAA--AACA------------CATGCCACTGCAAT--GG-ATCCGTCAGTAGCTCGGGGTGGGGGGTAAAGTTAGTGATTCTAATTTTCCAA-CATATACG-TTAATAAATCTACGACCCTTCTGTAACTGGATTTTAC-ATAAATACTACTGACC-CACTCAGACAGA----GGGGGGGTGGGGCT------TAAATTTTTCACGCCTATgtggcaaaacgtct
gi|2 : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCA-TCAAAAACAAGAATCC--ATACTTCAAATTCTCC-TTTGTAGTTA-TAGACCCAAGC-GCTTG-TGAATT-GCGG-ATGAAAATAC-TAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTAAAGTTGTCAGAAAAAA---GTGG---AAAGGGCAG-TTTCTTGGTTCCACGTCTATATGGGCATCATTAGTGTTACTGAGGAAGT-CGATTCCCGTTGTATTTTAT-GGATTAC---TTCC-----CCTTAAGAAATTTTTTGATTATATAAA-TA---AATACATTTATCTTTCTCGTAAG-AT-TATTT-CTG-----TAAATTTGCCAAGCAAGAATTTA--TAAATACATA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACTGTAG-TATTTATA-ATGACTA--T-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTTGAAGTTTTatgacataaatgttgct
gi|2 : gAA-TTGGG----------A-ATTGGGGGT---------CATTTAAAATCGAAAT-AAAGAA-A-TTAG-GA-----ATTTGTTTTAAAAGCG----TT-GAA---ATTATCT-GATAT-------TTG--------------AA-T-----------------TCTACAGCATGAATT---------------AA-AA---G-------G-TAAA-----TCAAA---TGC-TTGT--A-------T-A-----AG-AG-T--T---TACATG-AAGA-ATCT---------------TGAACATC----GGCCTTGGGTAAAATTGTTAAG----A-GCAG--C--GAC-AC--TTG---A----GGC------------------A----AAGA----A-CT--CAC-----A-AGTT--TGTA-----AC----ACAACACCCCCT-------------------------CT------TTT--CGGA---CACAA-TGTC-TTTAAATCAA--CACAC-----------CATGACA--GC-TT--GG-G--CGT-tgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggtcatttaaaatcgaaataaagaaattaggaatttgttttaaaagcgttgaaattatctgatatttgaattctacagcatgaattaaaaggtaaatcaaatgcttgtataagagtttacatgaagaatcttgaacatcggccttgggtaaaattgttaagagcagcgacacttgaggcaaagaactcacaagtttgtaacacaacaccccctcttttcggacacaatgtctttaaatcaacacaccatgacagcttgggcgt
gi|20 : gtacgaaagccagaaggctcattcgcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatccaaatcagccatcaaaaacaagaatccatacttcaaattctcctttgtagttatagacccaagcgcttgtgaattgcggatgaaaatactatagtttgtagggggaaatgatatatactggaaagtgtaaagttgtcagaaaaaagtggaaagggcagtttcttggttccacgtctatatgggcatcattagtgttactgaggaagtcgattcccgttgtattttatggattacttccccttaagaaattttttgattatataaataaatacatttatctttctcgtaagattatttctgtaaatttgccaagcaagaatttataaatacatatttatatgcaatctagggtaaacattgaaagcataggacactgtagtatttataatgactataaatgtgtcacaacttttttatttttatatttgaagtttttgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACGAGTG-T-TGCT--AACGCG-GAACGAAAAACGGAA-CGGG----ACGGAAAACG---GAAC-G-A-A-A-TTTAAGA-ATTA-AAATTATTG------ATGT--TGCTAA-GAT-AACACC-AAAC-TC--------------GA--GGAAATG--TGCTT-TATTTTCA-TATAGAT-AAA-AG-T-TTTT-GATGTATATGTATTT-ACA
gi|22 : atgatatgtacagcCAAAAT-AAA-AA-T-TTTG-GT------TTTAATT-ACAAGCG----GT-GAA---ACAATTC-TATGA-------TTA--------------AA-TGCTACAGCATGATTTAAT-------------T---------------AA-AA---G-------G-TAAG-----TGAAA---TGT-TTGTAGA-------C-CTGTATAG-AG-T--T---TACAcataacacagtatgtgtatacttacaacagggagtgtggta
gi|25 : CG-GAAAGGAAAACGGGA-A--A----A-----AATCA--GAAT-TTAGA-A-T-----G-ATCA-A------TGCGACTAAACCAGT------AA--AA----AAAAA-TCGGA----------AAA--A----T---TGCTTTCATTCCA--TCAAAAT-CAA-AAGT-TTTG-GA-----GATTATTT-GCAAGCG-----ATAAA---ACAATTT-TATA--------TTG--------------AA-T-----------------gagcaatttacaagaatcttgaaatttcagtattgataaaatgtttaaaagcagcaatacctgtgagtaaaaa
gi|26 : ggaaGAAAATGGAA-C--G----A-----AATC---TAATTGTA-A-A-T-----G-ATTA-A------TG---------TAATTT--------------AAAAA-TCGGG----------AGG--GGGGGGG-ATACTG-CATTTTAA-TCGAAAT-AAG-AA-T-TTAG-GA-----AATTGTTT-GCAAGCA-----TTAAA---ACAATCT-TATAaatatt
gi|27 : aAAG-CGATTCC-GTTGTATTTTATTGAATTACCCCT-CC-----CCCTAAATAATTTTCTAATGATATAAAAT----AATACATTTGTCTTTCT-
gi|28 : ggcacaatatagtgac--T---TACATA-------------------------TG----T-----AGC------------------G------GCAG--CC-GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGCCT-----------AT----ATCCCCCtttgtacgt
gi|29 : aatgacgaagtg--GAC-AC--TTAT--G----GGTAGAGAA-------T--GGA----AGGA----A-CG--CAC-----CGGGTTAATGTAT----AT----ATATGTGCCCCTC----C-CCG--------CCCC-CATT------TTC--ttatttgtggcaaaacg
gi|3 : gaaagGA----A-CA--CAC-----AGGGTT--TGTA------C----ACCCCCCCCCC-------------------CCCC-TTGT------TTT--TGGA-A-CA-AAACGTC-TTTAAATCAA--CACA------------CATGCCA--GT-GT--GGTA--TGT-Aatgttgacaaaacgac
gi|30 : TG-T-TGGTAAAACACG-GAACGGAAAGCGGAA-T--GGAACGC----AATTTAAGAAT-TAA-A-A-T-----A-ATTA-A------TG------tataagtcaacaagttttaacatcatcttttttaactaacaaggtcttcgtgtccgcagcactgcaatcctgaatagtaggctagatatttctaatctaaatacatgtacgtgtatcttatcactagattaataatggaaagaccttgtaattccactaaaacataaattctctgttaatattctaactatttcatacatcatgaaatagatttaataattcctttcaaaaggatcataaattccattttctttctttggaggggtggggtggggggctattgttactcttttatttccttttgttattgaattttttttttttcaccctctgtatcttgtaggggtcaaccagttcatgtacgtacattcacttttcataaatcgatctcaaatggggcaaacctttcacataccggattcgctcgctttagaattcaatatgatagataataattattatatcaagtgcagaactaaaatcaaattccatttaatatcgtcttaaaatatcccattcgattaaaagcaaattcgattaaagaaggctatgttagatggaaatcgttcaaaaattatcattctatctttttcaatatatatagatagactatcataa
gi|4 : caagacaagtagatGACAT-GTAGCTATTTATA-ATTACTT--TTAAATGTGACTAACAACTTTTTTTATTATTTATATTGAAAGTTTTtagctaagatgctacc
gi|4 : CTGTCACATG-TTTCACATGT--TCATTAAATTGACTGAGTCGGAAAGA--CTG-ATGTGTTCCTCTTTAAAT---CTAATAATGCAAAAACG-GTG-TATGTTTAAACGCT-GAACAGAATATGAAAAC--G----AC----AATC---GAA--GTA-A-A-T-----GTAT------------------ATGTAGTTTTAA-CA--AATACTAAAAC-TCGGG----------AGA--GGGGGTG----CTT-CATTTTA--TCGAAAT-CAACAA-T-TTAG-GA-----ATTTGTTT-AAAAGCA----TTGAAA---A-AATCT-TATAT-------TTG--------------AA-T-----------------T-------------TCTTACAGCATAAATTAA-AA---C-------G-TATA-----TCAAA---TGC-TTGTT-A-------T-C-----AG-AA-TATT---TACATA-AAGA-ATCT---------------TG----TTT---AAC------------------GC---A-GCAG--C--GACCAC--TTAC--G----GGCA-AGAA-------C--ACACCCCAGGA----AACA--CAT-----AG---T--TGTA-------------TCCCCC----------------------CCCC-CCCT------TTC--CGGA-C-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AG-AG-TC-GGGT-GGGG---AAGTTACTGAT--ATATTT----A-C-TATA-G-TATATAATTGTAC--------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGAGGGGGGtcttggtcaggaaatatatatcttcaataacaatcctcattaaaactgtcacatgtttcacatgttcattaaattgactgagtcggaaagactgatgtgttcctctttaaatctaataatgcaaaaacggtgtatgtttaaacgctgaacagaatatgaaaacgacaatcgaagtaaatgtatatgtagttttaacaaatactaaaactcgggagagggggtgcttcattttatcgaaatcaacaatttaggaatttgtttaaaagcattgaaaaaatcttatatttgaatttcttacagcataaattaaaacgtatatcaaatgcttgttatcagaatatttacataaagaatcttgtttaacgcagcagcgaccacttacgggcaagaacacaccccaggaaacacatagttgtatcccccccccccctttccggaccaaacgtctttaaatcaaaacacatgacagcatggacgtagagtcgggtggggaagttactgatatatttactatagtatataattgtacttacaataaatatgaccacaagaaaggggggaggggggtg
gi|5 : gacatgtagctatttataattacttttaaatgtgactaacaactttttttattatttatattgaaagtttttcttggtcaggaaatatatatcttcaataacaatcctcattaaaaAACTCTCTT-ATC-T----------AGTCTTATAATGACGCAATTACTTGAAATCATA----------G--TT--CTGAGTCG-AAAGATTCTG-ATGTGTTCCTCTTT---TAAATTAATAATGGCAAAACG-GTGAT-TGTTTAA-CGCCTGAACAGAATATGAAA-C--G----AC----AATC---GAA--GTA-A-A-T-----GTATTA-----------------TGTAGTTTTAACAA--AATACTAAAAC-TCGGG----------AGA--GGGGGC---TGCTT-CATTTT-A-TCGAAATCCAC-AA-T-TTAGCGC-----ATTCGTT----AAAGA----TT--GA---ACAATCT-TAT-T-------TTGCTTCTATAGACATAAA-T-----------------TA------------C---------------AA-AA---G-------GCTATA-----TCACA---TGC-TTGT--A-------T-C-----AG----T--TTAGTACATA-AAGATACCT---------------TGT---TT----AAC------------------G----AGGCAGCAC--GAC-AC--TTAC--G----GGCAACGAAACACACCC--CGC----AGGA----A-CA--CAC-----AGGTGT--TGTA------------------------------TCC--------CCCC-CCCT------TTC--CGGA---CA-AA-CGTC--TTAAATC----AACA------------CATGACA--GC-A---GG-A--CGT-AGTAG-TCGGGG-GGGGG---AAGTTACTGA---TAATTT----G-CTTATA-G-TATAT-AAT-TA-G-------------------TTACA--CAATA----TGACCACA---AGAAA----GGGGGGGAGGGGGGTG------TAAATC-----CGCCTATtg
gi|6 : a-GTAG--C--GA--AC--CTAT--G----AGTAGTGAA-------T--AGA----AAGA----A-CA--CAC-----ATGATT--TAT------AT----GCCCCGCTCCCTCTT--aaactaacatgtgcttgaggccgggcggatgaagaaaactgtgaattaatgggctgtgtttgcctatttccaggttcacaag
gi|7 : ACA-AAGA--------------------TG----TT----GGT------------------G----A-ACAG--C--GAC-AC--CTAT--G----AGTAGAGAA-------T--GGA----AAAA----A-TA--CAT-----ATGGTC--TATATCTGTACATGTACCCCCTCCCTTTCT--C-attgcaaagcgtctttaatgcacatgcatttacttatagatagtatgtagtgtttgcacttacaacaggttaaaacaacgataatcatgatctcattaagttaaacatatcgtatttgatattttgaattaatggatactgattgatcacaatacttcaatcttaaataggcgaaaacttctggcatctaaatatttgtgcatgaatcttacacgtgtacatgtattatttagattaagaatgagatgatattttaattctactcaaaaacaaattctcaattagccttttacctctttcatatatttttttaaataaatctgccaattactatagtcataaacttcacctccgttttcatttactctgtttcaatcttttctgctgtatctcttggggttcaacactaatccgcaaccaaggataacggtgcatgtacgaacgttcactttacataaattgatccaaaaaagaggcaaaccttttataatttttggacacgtttgcctcaa
gi|8 : agttttacagtaagctattgTCCAAATCAGCCAATCAAAATCAAGAAATCCAATACT-CAAATTACCTATTAGTAGTTAATAGACCCAAGCAGCATGATGA-TTTGCGGTATGAAAATACATATTAGTT-GTAGGGGGAAATGATTAATATTACTG-AAAGTGT-CAGTTGT-AGAAAAAAAAGGTAGGAGAAAGGGCAGGTTTCTTGGTTCCACGTGTA-ATGG-CA-CATTAGGGTTA-TGAGGAAAGTCGATTCC-GTTGTATTT-AT-GAATTAT---T-CCTTCCACCTTAAGA--TTTTTAGATTA-ATAAAATATAAAATACATTTATCTTTCT-GTAGATAAATATTTTCTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAA-ATACAACTTTA-ATGCAAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAGATATTTATAGATGACCTATT-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTGAAAGTTTTgtggcaagacaaccatgtatttaaacataatacagagtacaacaggttgtgtggtatgtataaaacaacggtgattcatgattttattttaaaagccaacaagacaaacatcttgtgtgtttttttatttattataattgtgtgtagtttatcttatattactaatgaagactgggtgtccgcagcactcaatcctacatgtactgtaagtaggttaaagcatttggtagtttaactctaatctaaatacttttcgagtctttttagtaataattggattaaatataggtataaatttcatcttagttttcattggttctgtttcagttgttttcccccgctgtatatctctttggtttcaacattaatcagcaggataccagtacatttacgaacctcccctttccataaattgatcctaaacgatgtaagcctt
gi|9 : aatcccagattcaagatatcaatAA---TGTATTTT--A-------TTC-----AG-AA-T--T---TAGA------A-A-TT---------------TG----TTTACAAAC------------------GTGAGA-GCAG--C--GAC-AC--TTGC--A----GGCAGGGAA-------------------------A-CA--CA------AGGGTT--TGTA-----AC------CCCCCCCCCTCCT--CGCCCATTCACCACCCCACCCTCACCGTTTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--CACA------------AATGACA--Gtgttgatttggaaataatgtttcattttaacacctttgaaat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTTTTCTTCGCTGTACCTCTTCGGGTTCAACACTAATCCGCAGGATACCGTTTCATACGAACTTTAACTTCACATAAATTGATTCCAAATGAGGCAAACCTCTTATACACATCGGATTCGTTTGCTTTTTCAAAAATATCTGTGCTGTATAATTATATATTGAACCAAATTGAAATTCAAGTTCAATTATCTTGAAAATATCCAGTTCGATTAAAAGCCAATTTGATTTTTTTAAAAGCTATGTTAGGGGGACATTGTTGGAAAAATTATTTTGTCTTTTCGATGTACGTTGCTTC
Unaligned ( gi|16 ): GTTCAACACAGGTGCACAGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACCTTTCAGACACTTTGCGCGTATTCGCTTTAAAATTTGATGTGGTACATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGATAATAAGCGAATTTCATTAAGATAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|17 ): TCAACACGGTGCAACGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACTTTCAGACACTTTGGCGCGTATTCGCTTTAAAATTTGATGTGTACAATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGGATAATAAGCGAATTTATTAAAGTTAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|21 ): TGACCGCAGCACTCATATTCCAAATAGACTAGGACTTCTGGCAGTTTATTTTTAATTCAAATACTTGTATCTTACATGTATCATTCAGATGAATGAGATGACCTTTAAATTCCATTCAAATATACATGTAAATTCTCTGTCAGTCTTTTAGATATTTCATATTATATTTGTTAATTTCGTTTAATAGAAATATAAATTTCACCTTC
Unaligned ( gi|23 ): GCTGTGTCTCTTCAGGTCCAACACTAATCCGCAGTTTAAGATACAGGTGCATGTATACCAACTTTCACAACACATAAATTTATCTCAAATAAACAAACATTTAAAACATTTTTGACCCGTGTGTTTTAAAATTTATGCGACACATAAATGTATATGTTCCAGACGTTTAACTGAATTCAGATTCAACTT
Unaligned ( gi|24 ): GGTGCTGCTAAACGTGAAGAAAACCGAAAGAAACGGAAAATGGAAAACAATTTAAGAAATGAATTAAAATTGTTAATATAGATAAGATAACACCAACAATAGGAAAAATATGTTTTATATCAATATAAATAAAATGAAAGGAATTTGTTTATAAGCAGT
Unaligned ( gi|31 ): GAAACAGGTAAAATTTGTCGATTGAGAACAGGCTTTGAGATGAAGAAATGTGAATTATGGGCTGTTTGCTATTTTCACAA
Unaligned ( gi|32 ): CCTACGCCTTGTGGGGGAAATATTTCAGTACATGTATGTAGATTATTCA
Alignments
lowQualScore : 2222 777777777777777777777777777777777777777777777777777777777777777777 11 3333333 1 1 1 1 1 1 22 11 1 1 222 1 1 1 1 22 1 1 2 11111 22222 2222 1 222 1 33333 22 11 11 1 2 1 1111 11 1 88888888888888888 1 11 1 3333333 44444444444444444444444444444444444444444444444444444444444444444444444444444444 555555555555555555555555 11111 3333333 7777777777777777777777777777777777777777777777777777777777777777777777777777 22222222222 11111 222222222222222222 555555555555555555555555555555555555555555555555555555555555555 22222222222222222 2222222222222222 2222222222222222222 111111 111 333333333333 1 111 111 33333333 1 1 888888888888888888888 2222 111 1111 333333 33333
lowQualScore : 4444 555555555555555555555555555555555555555555555555555555555555555555 7 88 7 4444444 7 3 3 3 3 3 3 6 2 7 00 7 88 3 6 7 6 3 333 3 3 7 3 7 6 3 6 00 0 0 3 0 88888 55555 3 3 3 0000 1 0 999 7 3 33333 7 55 7 88 7 88 2 0 0 4444 33 1 88 8 0 0 1 5 3 888 33333333333333333 0 3 88 3 7 7777777 7 1 6 5 5 0 6 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555 3 0 4 444444444444444444444444 4 44 88 7 3 3 7 22222 3 1111111 777 4 8888888888888888888888888888888888888888888888888888888888888888888888888888 5 33333333333 5 3 22222 4 777 4 333333333333333333 7777 77 555 888888888888888888888888888888888888888888888888888888888888888 2 33 66 5 33 6666 5555 2 44444444444444444 5555 2 33 66666 1 33 4444444444444444 9999999999999999999 4 0 111111 666 444 4 8 4 66 000000000000 66 88888 8888 5 9 0 6 55 777 777 66666666 0 0 3 8 222222222222222222222 66 1111 3 777 4444 0 888888 33333
lowQualScore : .... .................................................................. . .. . ....... . . . . . . . . . . .. . .. . . . . . ... . . . . . . . . .. . . . . ..... ..... . . . .... . . ... . . ..... . .. . .. . .. . . . .... .. . .. . . . . . . ... ................. . . .. . . ....... . . . . . . . . ................................................................................ . . . ........................ . .. .. . . . . ..... . ....... ... . ............................................................................ . ........... . . ..... . ... . .................. .... .. ... ............................................................... . .. .. . .. .... .... . ................. .... . .. ..... . .. ................ ................... . . ...... ... ... . . . .. ............ .. ..... .... . . . . .. ... ... ........ . . . . ..................... .. .... . ... .... . ...... .....
lowQualScore : 0000 000000000000000000000000000000000000000000000000000000000000000000 3 33 3 3333333 3 3 3 7 3 3 3 7 0 3 77 3 33 3 7 3 7 3 333 3 3 3 3 3 7 3 7 77 0 0 2 0 55555 00000 2 2 2 8888 2 0 000 3 3 33333 3 33 3 33 3 33 8 0 0 8888 88 0 88 0 8 8 0 0 7 000 77777777777777777 7 3 33 3 3 7777777 3 0 7 7 7 4 6 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111 7 9 0 444444444444444444444444 0 88 77 3 6 6 3 77777 6 0000000 000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 22222222222 0 6 55555 5 888 4 222222222222222222 3333 99 888 111111111111111111111111111111111111111111111111111111111111111 9 99 33 3 77 3333 7777 6 55555555555555555 3333 5 44 22222 4 44 1111111111111111 3333333333333333333 0 7 555555 222 666 4 9 4 99 666666666666 99 44444 9999 7 2 0 5 88 555 000 00000000 0 0 2 8 555555555555555555555 55 2222 2 555 5555 7 333333 33333
consensus : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT--CCT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGTG-ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCG----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT--C-CCC--------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
Reference ( family-1084 ) : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATTC-CCT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGTG-ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCG----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT--C-CCC--------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
gi|1 : TACGAAAGCCAGGAAGCTT----GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAAGT----T--TAA-----A-TAGATCCAAGC-GGGTG-TGT-TT-G-GGCGTGAAAATACATAT--GTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACA-TTGT-AGATAAAA---GT-GGA-AAATGGCAG-TTTCTTGGTTCCACGTGCATGTGGGTA-CATTAGT--T--TGAGGAAAG-CGATTCT-GTTGTATTTTATAGAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATGTAAAATA---AATACATTTTACTTTCG-GTA---AAATATTT-CTGGTTTTT---TTTGCCATGCAAGAATTTATATAATTATACA--TTTATATCAAA--TCAAAGATAAATATAGAAAGCATAGGACATGGTAG-TATTTATA-ATGACTT--T-AAATGTG--TAACCACTTTTT--ATT-TTTATATTGAA-GTTTTGAAATGAT-CTGTCACGTGATCTCATAT-TAACCATT-------TCGAGTCG-AATGA--CTGGATG-----CTCTCC---T---CTAATAA--AAAAAACG-GTA-T-TGTTTACACGCT-GATCAGAAAATGGAA-C--G----A-----AATC---GAATAGTA-A-A-T-----G-ATCA-A------TGCA----ATGTAGTTTTAA-AA--AATACTAAAAA-TCGGGCGGGGGTGGGGGG--GGGGGTGGATACTT-CATTTTAA-TCGAAAT-CAG-AA-T-TTAG-GA-----ATTTGTTT-GCAAGCA----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AAC------------------G----A-GCAG--C--GAT-AT--TTAC--G----GGCAAAGAA-------C--ACACCCCGGGA----A-CA--CAC-----AAGGTT--TGTA-----AC----ATCCCCCCCCCCCCTCCC-CCC--------CCCC-CCCT------TTA--CGGA-G-CA-AA-CTTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGGAG-TCAGGGTGGGGG---AAGTTACCGAT--TAATTC----AGC-TATA-GTTATATACATGTACG-------------------TTACAATAAATA----TGGCCACA---AGAAAGAGGGGGGGGGGGGGGGGTGCGGGGCTAAATC-----CGCCTAT
gi|10 : --AACACCAAAAAATTAGG----------AAA--A----T--ATATTT-TATTTCAA-TCATAAT-CAA-CA-TATCAG-GA-----ATTTGTTT-ACAAGCGGTCCTGTAAACTTGTTATAC-TATATAGTA---TTG--------------AAGG-----------------T-------------T---------------GA-AA---T-------G-TA---------AGAGTTTAC-TCGT--G-------T-------AG-CG-T--T---T-TACA-AGGA-T-CTTTTGACGGCTCCGGGTG----TT----AGC------------------T----A-GTCG--T--GAC-AC--CTATAAG----GGTAGAGAA-------TGAGGA----AACA----C-CC--CAC-----AGGGTT--T--------------ACCCCCTACCTTCCT--C-g
gi|11 : aagaaatagaaaaaaataagtatagctacatgtacaggtG-GCG-T-TGCTAAAACGTG-GAACGTAAAACGGAA-CTGG----AC----G------GAAT-ATA-ACATT-----G-ATTATA------T--------TGTAGCTttgtgaccaaacctttaacatatatatgtacatgcttttacacatttataaagcagtgtatgagtgcctttacaatagggagtgtggtacatgtatgtataaagaacgata
gi|11 : aaatgg-------T-C-----GG-AA-T--T---CA-----AAAA-A-GT---------------T-----TT----AGC------------------A----A-ACAG--C--GAA-ACCTTTGC--GATTGGGTAGAGAG-------T--GGA----AAGA----A-TA--CAC-----ATGGTT--T--------AC----CCCCTCCCCCCTTCT--C-aatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataatttcggaattcaaaaaagttttagcaaacagcgaaacctttgcgattgggtagagagtggaaagaatacacatggtttaccccctccccccttctcgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|12 : aaatggggcgttgctaaaacgtggaacgtaaaacggaactggacggaatataacattgattatattgtagctaatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataattAACGGGA-C--GG---AC----AAT----GAA--ATA-A-A-A-----C-ACTA-A--------------ATTTAGAATGAA-AAT-AACACCAAGAA-TTGGG------------------GGTATATGCTT-TATTTCAA-TCAAAAT-TAA-CA-T-TTAAAGA-----CTTTATTT-ACAAGTG----CT-AAA---ACAATATATATATAATTATATTG--------------AA-TA----------------T-------------T---------------GATAATATGAATATTTG-TATAACTATTTAAG---CGT-TTAT--A---------C-----AGCGG-T--T---TAC-TAGAATA-A-AT---------------TG----AC----AGC------------------G----A-GCTG--C--GATAAC--TT-T--G----GGTAGAGAA-------T--GGA----AATAATGTA-CATGTAC-----ATGATT--TATA-----A--------CCGCCTCATCCT--A-CCC--------CACT-CCTT------------GTG-G-CA-AA--ACC-TTTCAATgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|13 : ggG-GTG-T-TACTAAAACGCG-GAGCAGAAA-----------------------TT-----AT-----A-A-T-----G-ATTA-A------TG---------TAGT---AA-AGGTAACACCAAAAA-TCTGG----------AAA--------C-ATGTTT-TACTTTAA-TCAAAAT--------T-TTAG-GAC----ATT--TTT-AAAAGCG-----GCAAA---ACAA-CT-TAGAG-------CTA--------------AA-T-----------------T-------------T---------------acatgtatgtagactatttacacgtaatacagga
gi|13 : tggaattcagaaatatatacg-C-----AG-AAGTG-T---TACATA-------------------------TG----T-----AGC------------------G----A-GCAG--C--GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGCCT--T--------AT----ATCCCCCgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgacagaagtgttacatatgtagcgagcagcgacacctgtgggttaagaatggaaagaacacacaggccttatatcccccttatttgtggcaaaacgt
gi|14 : tggaattcagaaatatatacgggtgttactaaaacgcggagcagaaattataatgattaatgtagtaaaggtaacaccaaaaatctggaaacatgttttactttaatcaaaattttaggacatttttaaaagcggcaaaacaacttagagctaaatttgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgaAGA-A-AT---------------TG----TTTTAAAG-------------------G----A-CCAG--CCGAAC-AC--T-GC--G----GGCA----------------------AAGT----A-TA--CAT-----AAGGTT--TGTA-----AC----ACAACACCCACCCCT--C-TC------------------------TTC--CGGA-G-CA-AAGCGTCTTTTAAATCGAGGAATAAATTAATATTACCATGACA--GC-ATGGGG-G--CGT-AGttatttgtggcaaaacgt
gi|18 : tcttttaaaatcaatgagccataattcatttccaaaatatttgaattctacattcatgatattaaaagattaaatcggaatctagtataagaactttaacatgaagaatcttgaaaaattcggcattattggG--------------AA-T-----------------T-------------T---------------AG-AA---A-------G-CGTA-----T-------TGC-TTTT--AAGAAATGT-C-----GG-TA-T--C---GACATA---TG-A-CT---------------TA----T-------C------------------G----A-GAAG--C--GAC-AA--TCGT--G----AGCAGAGGA-------C--GTA----AAGC----A-CA--CACAGTTAAGGGTT--TATA-----TC----TCCCTCTCgttccgttggagggcaaggggtaatccccagtttttgaaaagtaagttatgtga
gi|19 : aatcggggaaaatatgctgtactagtttaaggaatttgataacaggtgtttaacaagttagattaagagactgtaaaataaatttattttgataagctattctaattattatgagaCCT--C-TCC--------TCCA-TTTT------TTATACGGATGTCA-AA-CTTC-CT-AAATCAA--AACA------------CATGCCACTGCAAT--GG-ATCCGTCAGTAGCTCGGGGTGGGGGGTAAAGTTAGTGATTCTAATTTTCCAA-CATATACG-TTAATAAATCTACGACCCTTCTGTAACTGGATTTTAC-ATAAATACTACTGACC-CACTCAGACAGA----GGGGGGGTGGGGCT------TAAATTTTTCACGCCTATgtggcaaaacgtct
gi|2 : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCA-TCAAAAACAAGAATCC--ATACTTCAAATTCTCCT--TTGTAGTTA-TAGACCCAAGC-GCTTG-TGAATT-GCGG-ATGAAAATAC-TAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTAAAGTTGTCAGAAAAAA---GT-GGA-AA-GGGCAG-TTTCTTGGTTCCACGTCTATATGGGCATCATTAGTGTTACTGAGGAAGT-CGATTCCCGTTGTATTTTAT-GGATTAC---TTCC-----CCTTAAGAAATTTTTTGATTATATAAA-TA---AATACATTTATCTTTCTCGTAAG-AT-TATTT-CTG-----TAAATTTGCCAAGCAAGAATTTA--TAAATACATA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACTGTAG-TATTTATA-ATGACTA--T-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTTGAAGTTTTatgacataaatgttgct
gi|2 : gAA-TTGGG----------A-ATTGGGGGT---------CATTTAAAATCGAAAT-AAAGAA-A-TTAG-GA-----ATTTGTTTTAAAAGCG----TT-GAA---ATTATCT-GATAT-------TTG--------------AA-T-----------------TCTACAGCATGAATT---------------AA-AA---G-------G-TAAA-----TCAAA---TGC-TTGT--A-------T-A-----AG-AG-T--T---TACATG-AAGA-ATCT---------------TGAACATC----GGCCTTGGGTAAAATTGTTAAG----A-GCAG--C--GAC-AC--TTG---A----GGC------------------A----AAGA----A-CT--CAC-----A-AGTT--TGTA-----AC----ACAACACCCCCT-------------------------CT------TTT--CGGA---CACAA-TGTC-TTTAAATCAA--CACAC-----------CATGACA--GC-TT--GG-G--CGT-tgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggtcatttaaaatcgaaataaagaaattaggaatttgttttaaaagcgttgaaattatctgatatttgaattctacagcatgaattaaaaggtaaatcaaatgcttgtataagagtttacatgaagaatcttgaacatcggccttgggtaaaattgttaagagcagcgacacttgaggcaaagaactcacaagtttgtaacacaacaccccctcttttcggacacaatgtctttaaatcaacacaccatgacagcttgggcgt
gi|20 : gtacgaaagccagaaggctcattcgcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatccaaatcagccatcaaaaacaagaatccatacttcaaattctcctttgtagttatagacccaagcgcttgtgaattgcggatgaaaatactatagtttgtagggggaaatgatatatactggaaagtgtaaagttgtcagaaaaaagtggaaagggcagtttcttggttccacgtctatatgggcatcattagtgttactgaggaagtcgattcccgttgtattttatggattacttccccttaagaaattttttgattatataaataaatacatttatctttctcgtaagattatttctgtaaatttgccaagcaagaatttataaatacatatttatatgcaatctagggtaaacattgaaagcataggacactgtagtatttataatgactataaatgtgtcacaacttttttatttttatatttgaagtttttgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACGAGTG-T-TGCT--AACGCG-GAACGAAAAACGGAA-CGGG----ACGGAAAACG---GAAC-G-A-A-A-TTTAAGA-ATTA-AAATTATTG------ATGT--TGCTAA-GAT-AACACC-AAAC-TC--------------GA--GGAAATG--TGCTT-TATTTTCA-TATAGAT-AAA-AG-T-TTTT-GATGTATATGTATTT-ACA
gi|22 : atgatatgtacagcCAAAAT-AAA-AA-T-TTTG-GT------TTTAATT-ACAAGCG----GT-GAA---ACAATTC-TATGA-------TTA--------------AA-TGCTACAGCATGATTTAAT-------------T---------------AA-AA---G-------G-TAAG-----TGAAA---TGT-TTGTAGA-------C-CTGTATAG-AG-T--T---TACAcataacacagtatgtgtatacttacaacagggagtgtggta
gi|25 : CG-GAAAGGAAAACGGGA-A--A----A-----AATCA--GAAT-TTAGA-A-T-----G-ATCA-A------TGCGACTAAACCAGT------AA--AA----AAAAA-TCGGA----------AAA--A----T---TGCTTTCATTCCA--TCAAAAT-CAA-AAGT-TTTG-GA-----GATTATTT-GCAAGCG-----ATAAA---ACAATTT-TATA--------TTG--------------AA-T-----------------gagcaatttacaagaatcttgaaatttcagtattgataaaatgtttaaaagcagcaatacctgtgagtaaaaa
gi|26 : ggaaGAAAATGGAA-C--G----A-----AATC---TAATTGTA-A-A-T-----G-ATTA-A------TG---------TAATTT--------------AAAAA-TCGGG----------AGG--GGGGGGG-ATACTG-CATTTTAA-TCGAAAT-AAG-AA-T-TTAG-GA-----AATTGTTT-GCAAGCA-----TTAAA---ACAATCT-TATAaatatt
gi|27 : aAAG-CGATTCC-GTTGTATTTTATTGAATTACCCCT-CC-----CCCTAAATAATTTTCTAATGATATAAAAT----AATACATTTGTCTTTCT-
gi|28 : ggcacaatatagtgac--T---TACATA-------------------------TG----T-----AGC------------------G------GCAG--CC-GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGCCT-----------AT----ATCCCCCtttgtacgt
gi|29 : aatgacgaagtg--GAC-AC--TTAT--G----GGTAGAGAA-------T--GGA----AGGA----A-CG--CAC-----CGGGTTAATGTAT----AT----ATATGTGCCCCTC----C-CCG--------CCCC-CATT------TTC--ttatttgtggcaaaacg
gi|3 : gaaagGA----A-CA--CAC-----AGGGTT--TGTA------C----ACCCCCCCCCC-------------------CCCC-TTGT------TTT--TGGA-A-CA-AAACGTC-TTTAAATCAA--CACA------------CATGCCA--GT-GT--GGTA--TGT-Aatgttgacaaaacgac
gi|30 : TG-T-TGGTAAAACACG-GAACGGAAAGCGGAA-T--GGAACGC----AATTTAAGAAT-TAA-A-A-T-----A-ATTA-A------TG------tataagtcaacaagttttaacatcatcttttttaactaacaaggtcttcgtgtccgcagcactgcaatcctgaatagtaggctagatatttctaatctaaatacatgtacgtgtatcttatcactagattaataatggaaagaccttgtaattccactaaaacataaattctctgttaatattctaactatttcatacatcatgaaatagatttaataattcctttcaaaaggatcataaattccattttctttctttggaggggtggggtggggggctattgttactcttttatttccttttgttattgaattttttttttttcaccctctgtatcttgtaggggtcaaccagttcatgtacgtacattcacttttcataaatcgatctcaaatggggcaaacctttcacataccggattcgctcgctttagaattcaatatgatagataataattattatatcaagtgcagaactaaaatcaaattccatttaatatcgtcttaaaatatcccattcgattaaaagcaaattcgattaaagaaggctatgttagatggaaatcgttcaaaaattatcattctatctttttcaatatatatagatagactatcataa
gi|4 : caagacaagtagatGACAT-GTAGCTATTTATA-ATTACTT--TTAAATGTGACTAACAACTTTTTTTATTATTTATATTGAAAGTTTTtagctaagatgctacc
gi|4 : CTGTCACATG-TTTCACATGT--TCATTAAATTGACTGAGTCGGAAAGA--CTG-ATGTGTTCCTCTTTAAAT---CTAATAATGCAAAAACG-GTG-TATGTTTAAACGCT-GAACAGAATATGAAAAC--G----AC----AATC---GAA--GTA-A-A-T-----GTAT------------------ATGTAGTTTTAA-CA--AATACTAAAAC-TCGGG----------AGA--GGGGGTG----CTT-CATTTTA--TCGAAAT-CAACAA-T-TTAG-GA-----ATTTGTTT-AAAAGCA----TTGAAA---A-AATCT-TATAT-------TTG--------------AA-T-----------------T-------------TCTTACAGCATAAATTAA-AA---C-------G-TATA-----TCAAA---TGC-TTGTT-A-------T-C-----AG-AA-TATT---TACATA-AAGA-ATCT---------------TG----TTT---AAC------------------GC---A-GCAG--C--GACCAC--TTAC--G----GGCA-AGAA-------C--ACACCCCAGGA----AACA--CAT-----AG---T--TGTA-------------TCCCCC----------------------CCCC-CCCT------TTC--CGGA-C-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AG-AG-TC-GGGT-GGGG---AAGTTACTGAT--ATATTT----A-C-TATA-G-TATATAATTGTAC--------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGAGGGGGGtcttggtcaggaaatatatatcttcaataacaatcctcattaaaactgtcacatgtttcacatgttcattaaattgactgagtcggaaagactgatgtgttcctctttaaatctaataatgcaaaaacggtgtatgtttaaacgctgaacagaatatgaaaacgacaatcgaagtaaatgtatatgtagttttaacaaatactaaaactcgggagagggggtgcttcattttatcgaaatcaacaatttaggaatttgtttaaaagcattgaaaaaatcttatatttgaatttcttacagcataaattaaaacgtatatcaaatgcttgttatcagaatatttacataaagaatcttgtttaacgcagcagcgaccacttacgggcaagaacacaccccaggaaacacatagttgtatcccccccccccctttccggaccaaacgtctttaaatcaaaacacatgacagcatggacgtagagtcgggtggggaagttactgatatatttactatagtatataattgtacttacaataaatatgaccacaagaaaggggggaggggggtg
gi|5 : gacatgtagctatttataattacttttaaatgtgactaacaactttttttattatttatattgaaagtttttcttggtcaggaaatatatatcttcaataacaatcctcattaaaaAACTCTCTT-ATC-T----------AGTCTTATAATGACGCAATTACTTGAAATCATA----------G--TT--CTGAGTCG-AAAGATTCTG-ATGTGTTCCTCTTT---TAAATTAATAATGGCAAAACG-GTGAT-TGTTTAA-CGCCTGAACAGAATATGAAA-C--G----AC----AATC---GAA--GTA-A-A-T-----GTATTA-----------------TGTAGTTTTAACAA--AATACTAAAAC-TCGGG----------AGA--GGGGGC---TGCTT-CATTTT-A-TCGAAATCCAC-AA-T-TTAGCGC-----ATTCGTT----AAAGA----TT--GA---ACAATCT-TAT-T-------TTGCTTCTATAGACATAAA-T-----------------TA------------C---------------AA-AA---G-------GCTATA-----TCACA---TGC-TTGT--A-------T-C-----AG----T--TTAGTACATA-AAGATACCT---------------TGT---TT----AAC------------------G----AGGCAGCAC--GAC-AC--TTAC--G----GGCAACGAAACACACCC--CGC----AGGA----A-CA--CAC-----AGGTGT--TGTA------------------------------TCC--------CCCC-CCCT------TTC--CGGA---CA-AA-CGTC--TTAAATC----AACA------------CATGACA--GC-A---GG-A--CGT-AGTAG-TCGGGG-GGGGG---AAGTTACTGA---TAATTT----G-CTTATA-G-TATAT-AAT-TA-G-------------------TTACA--CAATA----TGACCACA---AGAAA----GGGGGGGAGGGGGGTG------TAAATC-----CGCCTATtg
gi|6 : a-GTAG--C--GA--AC--CTAT--G----AGTAGTGAA-------T--AGA----AAGA----A-CA--CAC-----ATGATT--TAT------AT----GCCCCGCTCCCTCTT--aaactaacatgtgcttgaggccgggcggatgaagaaaactgtgaattaatgggctgtgtttgcctatttccaggttcacaag
gi|7 : ACA-AAGA--------------------TG----TT----GGT------------------G----A-ACAG--C--GAC-AC--CTAT--G----AGTAGAGAA-------T--GGA----AAAA----A-TA--CAT-----ATGGTC--TATATCTGTACATGTACCCCCTCCCTTTCT--C-attgcaaagcgtctttaatgcacatgcatttacttatagatagtatgtagtgtttgcacttacaacaggttaaaacaacgataatcatgatctcattaagttaaacatatcgtatttgatattttgaattaatggatactgattgatcacaatacttcaatcttaaataggcgaaaacttctggcatctaaatatttgtgcatgaatcttacacgtgtacatgtattatttagattaagaatgagatgatattttaattctactcaaaaacaaattctcaattagccttttacctctttcatatatttttttaaataaatctgccaattactatagtcataaacttcacctccgttttcatttactctgtttcaatcttttctgctgtatctcttggggttcaacactaatccgcaaccaaggataacggtgcatgtacgaacgttcactttacataaattgatccaaaaaagaggcaaaccttttataatttttggacacgtttgcctcaa
gi|8 : agttttacagtaagctattgTCCAAATCAGCCAATCAAAATCAAGAAATCCAATACT-CAAATTA-CCTATTAGTAGTTAATAGACCCAAGCAGCATGATGA-TTTGCGGTATGAAAATACATATTAGTT-GTAGGGGGAAATGATTAATATTACTG-AAAGTGT-CAGTTGT-AGAAAAAAAAGGTAGGAGAAAGGGCAGGTTTCTTGGTTCCACGTGTA-ATGG-CA-CATTAGGGTTA-TGAGGAAAGTCGATTCC-GTTGTATTT-AT-GAATTAT---T-CCTTCCACCTTAAGA--TTTTTAGATTA-ATAAAATATAAAATACATTTATCTTTCT-GTAGATAAATATTTTCTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAA-ATACAACTTTA-ATGCAAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAGATATTTATAGATGACCTATT-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTGAAAGTTTTgtggcaagacaaccatgtatttaaacataatacagagtacaacaggttgtgtggtatgtataaaacaacggtgattcatgattttattttaaaagccaacaagacaaacatcttgtgtgtttttttatttattataattgtgtgtagtttatcttatattactaatgaagactgggtgtccgcagcactcaatcctacatgtactgtaagtaggttaaagcatttggtagtttaactctaatctaaatacttttcgagtctttttagtaataattggattaaatataggtataaatttcatcttagttttcattggttctgtttcagttgttttcccccgctgtatatctctttggtttcaacattaatcagcaggataccagtacatttacgaacctcccctttccataaattgatcctaaacgatgtaagcctt
gi|9 : aatcccagattcaagatatcaatAA---TGTATTTT--A-------TTC-----AG-AA-T--T---TAGA------A-A-TT---------------TG----TTTACAAAC------------------GTGAGA-GCAG--C--GAC-AC--TTGC--A----GGCAGGGAA-------------------------A-CA--CA------AGGGTT--TGTA-----AC------CCCCCCCCCTCCT--CGCCCATTCACCACCCCACCCTCACCGTTTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--CACA------------AATGACA--Gtgttgatttggaaataatgtttcattttaacacctttgaaat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTTTTCTTCGCTGTACCTCTTCGGGTTCAACACTAATCCGCAGGATACCGTTTCATACGAACTTTAACTTCACATAAATTGATTCCAAATGAGGCAAACCTCTTATACACATCGGATTCGTTTGCTTTTTCAAAAATATCTGTGCTGTATAATTATATATTGAACCAAATTGAAATTCAAGTTCAATTATCTTGAAAATATCCAGTTCGATTAAAAGCCAATTTGATTTTTTTAAAAGCTATGTTAGGGGGACATTGTTGGAAAAATTATTTTGTCTTTTCGATGTACGTTGCTTC
Unaligned ( gi|16 ): GTTCAACACAGGTGCACAGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACCTTTCAGACACTTTGCGCGTATTCGCTTTAAAATTTGATGTGGTACATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGATAATAAGCGAATTTCATTAAGATAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|17 ): TCAACACGGTGCAACGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACTTTCAGACACTTTGGCGCGTATTCGCTTTAAAATTTGATGTGTACAATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGGATAATAAGCGAATTTATTAAAGTTAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|21 ): TGACCGCAGCACTCATATTCCAAATAGACTAGGACTTCTGGCAGTTTATTTTTAATTCAAATACTTGTATCTTACATGTATCATTCAGATGAATGAGATGACCTTTAAATTCCATTCAAATATACATGTAAATTCTCTGTCAGTCTTTTAGATATTTCATATTATATTTGTTAATTTCGTTTAATAGAAATATAAATTTCACCTTC
Unaligned ( gi|23 ): GCTGTGTCTCTTCAGGTCCAACACTAATCCGCAGTTTAAGATACAGGTGCATGTATACCAACTTTCACAACACATAAATTTATCTCAAATAAACAAACATTTAAAACATTTTTGACCCGTGTGTTTTAAAATTTATGCGACACATAAATGTATATGTTCCAGACGTTTAACTGAATTCAGATTCAACTT
Unaligned ( gi|24 ): GGTGCTGCTAAACGTGAAGAAAACCGAAAGAAACGGAAAATGGAAAACAATTTAAGAAATGAATTAAAATTGTTAATATAGATAAGATAACACCAACAATAGGAAAAATATGTTTTATATCAATATAAATAAAATGAAAGGAATTTGTTTATAAGCAGT
Unaligned ( gi|31 ): GAAACAGGTAAAATTTGTCGATTGAGAACAGGCTTTGAGATGAAGAAATGTGAATTATGGGCTGTTTGCTATTTTCACAA
Unaligned ( gi|32 ): CCTACGCCTTGTGGGGGAAATATTTCAGTACATGTATGTAGATTATTCA
Alignments
lowQualScore : 2222 777777777777777777777777777777777777777777777777777777777777777777 11 44444444 1 1 1 1 1 1 22 11 1 1 222 1 1 1 1 22 1 1 2 11111 22222 2222 1 222 1 33333 22 11 11 1 2 1 1111 11 1 88888888888888888 1 11 1 3333333 44444444444444444444444444444444444444444444444444444444444444444444444444444444 555555555555555555555555 11111 3333333 7777777777777777777777777777777777777777777777777777777777777777777777777777 22222222222 11111 222222222222222222 555555555555555555555555555555555555555555555555555555555555555 22222222222222222 2222222222222222 2222222222222222222 111111 111 333333333333 1 111 111 33333333 1 1 888888888888888888888 2222 111 1111 333333 33333
lowQualScore : 4444 555555555555555555555555555555555555555555555555555555555555555555 7 88 7 66666666 7 3 3 3 3 3 3 6 2 7 00 7 88 3 6 7 6 3 333 3 3 7 3 7 6 3 6 00 0 0 3 0 88888 55555 3 3 3 0000 1 0 999 7 3 33333 7 55 7 88 7 88 2 0 0 4444 33 1 88 8 0 0 1 5 3 888 33333333333333333 0 3 88 3 7 7777777 7 1 6 5 5 0 6 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555 3 0 4 444444444444444444444444 4 44 88 7 3 3 7 22222 3 1111111 777 4 8888888888888888888888888888888888888888888888888888888888888888888888888888 5 33333333333 5 3 22222 4 777 4 333333333333333333 7777 77 555 888888888888888888888888888888888888888888888888888888888888888 2 33 66 5 33 6666 5555 2 44444444444444444 5555 2 33 66666 1 33 4444444444444444 9999999999999999999 4 0 111111 666 444 4 8 4 66 000000000000 66 88888 8888 5 9 0 6 55 777 777 66666666 0 0 3 8 222222222222222222222 66 1111 3 777 4444 0 888888 33333
lowQualScore : .... .................................................................. . .. . ........ . . . . . . . . . . .. . .. . . . . . ... . . . . . . . . .. . . . . ..... ..... . . . .... . . ... . . ..... . .. . .. . .. . . . .... .. . .. . . . . . . ... ................. . . .. . . ....... . . . . . . . . ................................................................................ . . . ........................ . .. .. . . . . ..... . ....... ... . ............................................................................ . ........... . . ..... . ... . .................. .... .. ... ............................................................... . .. .. . .. .... .... . ................. .... . .. ..... . .. ................ ................... . . ...... ... ... . . . .. ............ .. ..... .... . . . . .. ... ... ........ . . . . ..................... .. .... . ... .... . ...... .....
lowQualScore : 0000 000000000000000000000000000000000000000000000000000000000000000000 3 33 3 00000000 3 3 3 7 3 3 3 7 0 3 77 3 33 3 7 3 7 3 333 3 3 3 3 3 7 3 7 77 0 0 2 0 55555 00000 2 2 2 8888 2 0 000 3 3 33333 3 33 3 33 3 33 8 0 0 8888 88 0 88 0 8 8 0 0 7 000 77777777777777777 7 3 33 3 3 7777777 3 0 7 7 7 4 6 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111 7 9 0 444444444444444444444444 0 88 77 3 6 6 3 77777 6 0000000 000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 22222222222 0 6 55555 5 888 4 222222222222222222 3333 99 888 111111111111111111111111111111111111111111111111111111111111111 9 99 33 3 77 3333 7777 6 55555555555555555 3333 5 44 22222 4 44 1111111111111111 3333333333333333333 0 7 555555 222 666 4 9 4 99 666666666666 99 44444 9999 7 2 0 5 88 555 000 00000000 0 0 2 8 555555555555555555555 55 2222 2 555 5555 7 333333 33333
consensus : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-C--CT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGTG-ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCG----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT--C-CCC--------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
Reference ( family-1084 ) : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-C--CT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGTG-ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCG----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT--C-CCC--------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
gi|1 : TACGAAAGCCAGGAAGCTT----GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAAGT-----T--TAA-----A-TAGATCCAAGC-GGGTG-TGT-TT-G-GGCGTGAAAATACATAT--GTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACA-TTGT-AGATAAAA---GT-GGA-AAATGGCAG-TTTCTTGGTTCCACGTGCATGTGGGTA-CATTAGT--T--TGAGGAAAG-CGATTCT-GTTGTATTTTATAGAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATGTAAAATA---AATACATTTTACTTTCG-GTA---AAATATTT-CTGGTTTTT---TTTGCCATGCAAGAATTTATATAATTATACA--TTTATATCAAA--TCAAAGATAAATATAGAAAGCATAGGACATGGTAG-TATTTATA-ATGACTT--T-AAATGTG--TAACCACTTTTT--ATT-TTTATATTGAA-GTTTTGAAATGAT-CTGTCACGTGATCTCATAT-TAACCATT-------TCGAGTCG-AATGA--CTGGATG-----CTCTCC---T---CTAATAA--AAAAAACG-GTA-T-TGTTTACACGCT-GATCAGAAAATGGAA-C--G----A-----AATC---GAATAGTA-A-A-T-----G-ATCA-A------TGCA----ATGTAGTTTTAA-AA--AATACTAAAAA-TCGGGCGGGGGTGGGGGG--GGGGGTGGATACTT-CATTTTAA-TCGAAAT-CAG-AA-T-TTAG-GA-----ATTTGTTT-GCAAGCA----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AAC------------------G----A-GCAG--C--GAT-AT--TTAC--G----GGCAAAGAA-------C--ACACCCCGGGA----A-CA--CAC-----AAGGTT--TGTA-----AC----ATCCCCCCCCCCCCTCCC-CCC--------CCCC-CCCT------TTA--CGGA-G-CA-AA-CTTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGGAG-TCAGGGTGGGGG---AAGTTACCGAT--TAATTC----AGC-TATA-GTTATATACATGTACG-------------------TTACAATAAATA----TGGCCACA---AGAAAGAGGGGGGGGGGGGGGGGTGCGGGGCTAAATC-----CGCCTAT
gi|10 : --AACACCAAAAAATTAGG----------AAA--A----T--ATATTT-TATTTCAA-TCATAAT-CAA-CA-TATCAG-GA-----ATTTGTTT-ACAAGCGGTCCTGTAAACTTGTTATAC-TATATAGTA---TTG--------------AAGG-----------------T-------------T---------------GA-AA---T-------G-TA---------AGAGTTTAC-TCGT--G-------T-------AG-CG-T--T---T-TACA-AGGA-T-CTTTTGACGGCTCCGGGTG----TT----AGC------------------T----A-GTCG--T--GAC-AC--CTATAAG----GGTAGAGAA-------TGAGGA----AACA----C-CC--CAC-----AGGGTT--T--------------ACCCCCTACCTTCCT--C-g
gi|11 : aagaaatagaaaaaaataagtatagctacatgtacaggtG-GCG-T-TGCTAAAACGTG-GAACGTAAAACGGAA-CTGG----AC----G------GAAT-ATA-ACATT-----G-ATTATA------T--------TGTAGCTttgtgaccaaacctttaacatatatatgtacatgcttttacacatttataaagcagtgtatgagtgcctttacaatagggagtgtggtacatgtatgtataaagaacgata
gi|11 : aaatgg-------T-C-----GG-AA-T--T---CA-----AAAA-A-GT---------------T-----TT----AGC------------------A----A-ACAG--C--GAA-ACCTTTGC--GATTGGGTAGAGAG-------T--GGA----AAGA----A-TA--CAC-----ATGGTT--T--------AC----CCCCTCCCCCCTTCT--C-aatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataatttcggaattcaaaaaagttttagcaaacagcgaaacctttgcgattgggtagagagtggaaagaatacacatggtttaccccctccccccttctcgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|12 : aaatggggcgttgctaaaacgtggaacgtaaaacggaactggacggaatataacattgattatattgtagctaatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataattAACGGGA-C--GG---AC----AAT----GAA--ATA-A-A-A-----C-ACTA-A--------------ATTTAGAATGAA-AAT-AACACCAAGAA-TTGGG------------------GGTATATGCTT-TATTTCAA-TCAAAAT-TAA-CA-T-TTAAAGA-----CTTTATTT-ACAAGTG----CT-AAA---ACAATATATATATAATTATATTG--------------AA-TA----------------T-------------T---------------GATAATATGAATATTTG-TATAACTATTTAAG---CGT-TTAT--A---------C-----AGCGG-T--T---TAC-TAGAATA-A-AT---------------TG----AC----AGC------------------G----A-GCTG--C--GATAAC--TT-T--G----GGTAGAGAA-------T--GGA----AATAATGTA-CATGTAC-----ATGATT--TATA-----A--------CCGCCTCATCCT--A-CCC--------CACT-CCTT------------GTG-G-CA-AA--ACC-TTTCAATgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|13 : ggG-GTG-T-TACTAAAACGCG-GAGCAGAAA-----------------------TT-----AT-----A-A-T-----G-ATTA-A------TG---------TAGT---AA-AGGTAACACCAAAAA-TCTGG----------AAA--------C-ATGTTT-TACTTTAA-TCAAAAT--------T-TTAG-GAC----ATT--TTT-AAAAGCG-----GCAAA---ACAA-CT-TAGAG-------CTA--------------AA-T-----------------T-------------T---------------acatgtatgtagactatttacacgtaatacagga
gi|13 : tggaattcagaaatatatacg-C-----AG-AAGTG-T---TACATA-------------------------TG----T-----AGC------------------G----A-GCAG--C--GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGCCT--T--------AT----ATCCCCCgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgacagaagtgttacatatgtagcgagcagcgacacctgtgggttaagaatggaaagaacacacaggccttatatcccccttatttgtggcaaaacgt
gi|14 : tggaattcagaaatatatacgggtgttactaaaacgcggagcagaaattataatgattaatgtagtaaaggtaacaccaaaaatctggaaacatgttttactttaatcaaaattttaggacatttttaaaagcggcaaaacaacttagagctaaatttgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgaAGA-A-AT---------------TG----TTTTAAAG-------------------G----A-CCAG--CCGAAC-AC--T-GC--G----GGCA----------------------AAGT----A-TA--CAT-----AAGGTT--TGTA-----AC----ACAACACCCACCCCT--C-TC------------------------TTC--CGGA-G-CA-AAGCGTCTTTTAAATCGAGGAATAAATTAATATTACCATGACA--GC-ATGGGG-G--CGT-AGttatttgtggcaaaacgt
gi|18 : tcttttaaaatcaatgagccataattcatttccaaaatatttgaattctacattcatgatattaaaagattaaatcggaatctagtataagaactttaacatgaagaatcttgaaaaattcggcattattggG--------------AA-T-----------------T-------------T---------------AG-AA---A-------G-CGTA-----T-------TGC-TTTT--AAGAAATGT-C-----GG-TA-T--C---GACATA---TG-A-CT---------------TA----T-------C------------------G----A-GAAG--C--GAC-AA--TCGT--G----AGCAGAGGA-------C--GTA----AAGC----A-CA--CACAGTTAAGGGTT--TATA-----TC----TCCCTCTCgttccgttggagggcaaggggtaatccccagtttttgaaaagtaagttatgtga
gi|19 : aatcggggaaaatatgctgtactagtttaaggaatttgataacaggtgtttaacaagttagattaagagactgtaaaataaatttattttgataagctattctaattattatgagaCCT--C-TCC--------TCCA-TTTT------TTATACGGATGTCA-AA-CTTC-CT-AAATCAA--AACA------------CATGCCACTGCAAT--GG-ATCCGTCAGTAGCTCGGGGTGGGGGGTAAAGTTAGTGATTCTAATTTTCCAA-CATATACG-TTAATAAATCTACGACCCTTCTGTAACTGGATTTTAC-ATAAATACTACTGACC-CACTCAGACAGA----GGGGGGGTGGGGCT------TAAATTTTTCACGCCTATgtggcaaaacgtct
gi|2 : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCA-TCAAAAACAAGAATCC--ATACTTCAAATT-CTCCT--TTGTAGTTA-TAGACCCAAGC-GCTTG-TGAATT-GCGG-ATGAAAATAC-TAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTAAAGTTGTCAGAAAAAA---GT-GGA-AA-GGGCAG-TTTCTTGGTTCCACGTCTATATGGGCATCATTAGTGTTACTGAGGAAGT-CGATTCCCGTTGTATTTTAT-GGATTAC---TTCC-----CCTTAAGAAATTTTTTGATTATATAAA-TA---AATACATTTATCTTTCTCGTAAG-AT-TATTT-CTG-----TAAATTTGCCAAGCAAGAATTTA--TAAATACATA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACTGTAG-TATTTATA-ATGACTA--T-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTTGAAGTTTTatgacataaatgttgct
gi|2 : gAA-TTGGG----------A-ATTGGGGGT---------CATTTAAAATCGAAAT-AAAGAA-A-TTAG-GA-----ATTTGTTTTAAAAGCG----TT-GAA---ATTATCT-GATAT-------TTG--------------AA-T-----------------TCTACAGCATGAATT---------------AA-AA---G-------G-TAAA-----TCAAA---TGC-TTGT--A-------T-A-----AG-AG-T--T---TACATG-AAGA-ATCT---------------TGAACATC----GGCCTTGGGTAAAATTGTTAAG----A-GCAG--C--GAC-AC--TTG---A----GGC------------------A----AAGA----A-CT--CAC-----A-AGTT--TGTA-----AC----ACAACACCCCCT-------------------------CT------TTT--CGGA---CACAA-TGTC-TTTAAATCAA--CACAC-----------CATGACA--GC-TT--GG-G--CGT-tgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggtcatttaaaatcgaaataaagaaattaggaatttgttttaaaagcgttgaaattatctgatatttgaattctacagcatgaattaaaaggtaaatcaaatgcttgtataagagtttacatgaagaatcttgaacatcggccttgggtaaaattgttaagagcagcgacacttgaggcaaagaactcacaagtttgtaacacaacaccccctcttttcggacacaatgtctttaaatcaacacaccatgacagcttgggcgt
gi|20 : gtacgaaagccagaaggctcattcgcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatccaaatcagccatcaaaaacaagaatccatacttcaaattctcctttgtagttatagacccaagcgcttgtgaattgcggatgaaaatactatagtttgtagggggaaatgatatatactggaaagtgtaaagttgtcagaaaaaagtggaaagggcagtttcttggttccacgtctatatgggcatcattagtgttactgaggaagtcgattcccgttgtattttatggattacttccccttaagaaattttttgattatataaataaatacatttatctttctcgtaagattatttctgtaaatttgccaagcaagaatttataaatacatatttatatgcaatctagggtaaacattgaaagcataggacactgtagtatttataatgactataaatgtgtcacaacttttttatttttatatttgaagtttttgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACGAGTG-T-TGCT--AACGCG-GAACGAAAAACGGAA-CGGG----ACGGAAAACG---GAAC-G-A-A-A-TTTAAGA-ATTA-AAATTATTG------ATGT--TGCTAA-GAT-AACACC-AAAC-TC--------------GA--GGAAATG--TGCTT-TATTTTCA-TATAGAT-AAA-AG-T-TTTT-GATGTATATGTATTT-ACA
gi|22 : atgatatgtacagcCAAAAT-AAA-AA-T-TTTG-GT------TTTAATT-ACAAGCG----GT-GAA---ACAATTC-TATGA-------TTA--------------AA-TGCTACAGCATGATTTAAT-------------T---------------AA-AA---G-------G-TAAG-----TGAAA---TGT-TTGTAGA-------C-CTGTATAG-AG-T--T---TACAcataacacagtatgtgtatacttacaacagggagtgtggta
gi|25 : CG-GAAAGGAAAACGGGA-A--A----A-----AATCA--GAAT-TTAGA-A-T-----G-ATCA-A------TGCGACTAAACCAGT------AA--AA----AAAAA-TCGGA----------AAA--A----T---TGCTTTCATTCCA--TCAAAAT-CAA-AAGT-TTTG-GA-----GATTATTT-GCAAGCG-----ATAAA---ACAATTT-TATA--------TTG--------------AA-T-----------------gagcaatttacaagaatcttgaaatttcagtattgataaaatgtttaaaagcagcaatacctgtgagtaaaaa
gi|26 : ggaaGAAAATGGAA-C--G----A-----AATC---TAATTGTA-A-A-T-----G-ATTA-A------TG---------TAATTT--------------AAAAA-TCGGG----------AGG--GGGGGGG-ATACTG-CATTTTAA-TCGAAAT-AAG-AA-T-TTAG-GA-----AATTGTTT-GCAAGCA-----TTAAA---ACAATCT-TATAaatatt
gi|27 : aAAG-CGATTCC-GTTGTATTTTATTGAATTACCCCT-CC-----CCCTAAATAATTTTCTAATGATATAAAAT----AATACATTTGTCTTTCT-
gi|28 : ggcacaatatagtgac--T---TACATA-------------------------TG----T-----AGC------------------G------GCAG--CC-GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGCCT-----------AT----ATCCCCCtttgtacgt
gi|29 : aatgacgaagtg--GAC-AC--TTAT--G----GGTAGAGAA-------T--GGA----AGGA----A-CG--CAC-----CGGGTTAATGTAT----AT----ATATGTGCCCCTC----C-CCG--------CCCC-CATT------TTC--ttatttgtggcaaaacg
gi|3 : gaaagGA----A-CA--CAC-----AGGGTT--TGTA------C----ACCCCCCCCCC-------------------CCCC-TTGT------TTT--TGGA-A-CA-AAACGTC-TTTAAATCAA--CACA------------CATGCCA--GT-GT--GGTA--TGT-Aatgttgacaaaacgac
gi|30 : TG-T-TGGTAAAACACG-GAACGGAAAGCGGAA-T--GGAACGC----AATTTAAGAAT-TAA-A-A-T-----A-ATTA-A------TG------tataagtcaacaagttttaacatcatcttttttaactaacaaggtcttcgtgtccgcagcactgcaatcctgaatagtaggctagatatttctaatctaaatacatgtacgtgtatcttatcactagattaataatggaaagaccttgtaattccactaaaacataaattctctgttaatattctaactatttcatacatcatgaaatagatttaataattcctttcaaaaggatcataaattccattttctttctttggaggggtggggtggggggctattgttactcttttatttccttttgttattgaattttttttttttcaccctctgtatcttgtaggggtcaaccagttcatgtacgtacattcacttttcataaatcgatctcaaatggggcaaacctttcacataccggattcgctcgctttagaattcaatatgatagataataattattatatcaagtgcagaactaaaatcaaattccatttaatatcgtcttaaaatatcccattcgattaaaagcaaattcgattaaagaaggctatgttagatggaaatcgttcaaaaattatcattctatctttttcaatatatatagatagactatcataa
gi|4 : caagacaagtagatGACAT-GTAGCTATTTATA-ATTACTT--TTAAATGTGACTAACAACTTTTTTTATTATTTATATTGAAAGTTTTtagctaagatgctacc
gi|4 : CTGTCACATG-TTTCACATGT--TCATTAAATTGACTGAGTCGGAAAGA--CTG-ATGTGTTCCTCTTTAAAT---CTAATAATGCAAAAACG-GTG-TATGTTTAAACGCT-GAACAGAATATGAAAAC--G----AC----AATC---GAA--GTA-A-A-T-----GTAT------------------ATGTAGTTTTAA-CA--AATACTAAAAC-TCGGG----------AGA--GGGGGTG----CTT-CATTTTA--TCGAAAT-CAACAA-T-TTAG-GA-----ATTTGTTT-AAAAGCA----TTGAAA---A-AATCT-TATAT-------TTG--------------AA-T-----------------T-------------TCTTACAGCATAAATTAA-AA---C-------G-TATA-----TCAAA---TGC-TTGTT-A-------T-C-----AG-AA-TATT---TACATA-AAGA-ATCT---------------TG----TTT---AAC------------------GC---A-GCAG--C--GACCAC--TTAC--G----GGCA-AGAA-------C--ACACCCCAGGA----AACA--CAT-----AG---T--TGTA-------------TCCCCC----------------------CCCC-CCCT------TTC--CGGA-C-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AG-AG-TC-GGGT-GGGG---AAGTTACTGAT--ATATTT----A-C-TATA-G-TATATAATTGTAC--------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGAGGGGGGtcttggtcaggaaatatatatcttcaataacaatcctcattaaaactgtcacatgtttcacatgttcattaaattgactgagtcggaaagactgatgtgttcctctttaaatctaataatgcaaaaacggtgtatgtttaaacgctgaacagaatatgaaaacgacaatcgaagtaaatgtatatgtagttttaacaaatactaaaactcgggagagggggtgcttcattttatcgaaatcaacaatttaggaatttgtttaaaagcattgaaaaaatcttatatttgaatttcttacagcataaattaaaacgtatatcaaatgcttgttatcagaatatttacataaagaatcttgtttaacgcagcagcgaccacttacgggcaagaacacaccccaggaaacacatagttgtatcccccccccccctttccggaccaaacgtctttaaatcaaaacacatgacagcatggacgtagagtcgggtggggaagttactgatatatttactatagtatataattgtacttacaataaatatgaccacaagaaaggggggaggggggtg
gi|5 : gacatgtagctatttataattacttttaaatgtgactaacaactttttttattatttatattgaaagtttttcttggtcaggaaatatatatcttcaataacaatcctcattaaaaAACTCTCTT-ATC-T----------AGTCTTATAATGACGCAATTACTTGAAATCATA----------G--TT--CTGAGTCG-AAAGATTCTG-ATGTGTTCCTCTTT---TAAATTAATAATGGCAAAACG-GTGAT-TGTTTAA-CGCCTGAACAGAATATGAAA-C--G----AC----AATC---GAA--GTA-A-A-T-----GTATTA-----------------TGTAGTTTTAACAA--AATACTAAAAC-TCGGG----------AGA--GGGGGC---TGCTT-CATTTT-A-TCGAAATCCAC-AA-T-TTAGCGC-----ATTCGTT----AAAGA----TT--GA---ACAATCT-TAT-T-------TTGCTTCTATAGACATAAA-T-----------------TA------------C---------------AA-AA---G-------GCTATA-----TCACA---TGC-TTGT--A-------T-C-----AG----T--TTAGTACATA-AAGATACCT---------------TGT---TT----AAC------------------G----AGGCAGCAC--GAC-AC--TTAC--G----GGCAACGAAACACACCC--CGC----AGGA----A-CA--CAC-----AGGTGT--TGTA------------------------------TCC--------CCCC-CCCT------TTC--CGGA---CA-AA-CGTC--TTAAATC----AACA------------CATGACA--GC-A---GG-A--CGT-AGTAG-TCGGGG-GGGGG---AAGTTACTGA---TAATTT----G-CTTATA-G-TATAT-AAT-TA-G-------------------TTACA--CAATA----TGACCACA---AGAAA----GGGGGGGAGGGGGGTG------TAAATC-----CGCCTATtg
gi|6 : a-GTAG--C--GA--AC--CTAT--G----AGTAGTGAA-------T--AGA----AAGA----A-CA--CAC-----ATGATT--TAT------AT----GCCCCGCTCCCTCTT--aaactaacatgtgcttgaggccgggcggatgaagaaaactgtgaattaatgggctgtgtttgcctatttccaggttcacaag
gi|7 : ACA-AAGA--------------------TG----TT----GGT------------------G----A-ACAG--C--GAC-AC--CTAT--G----AGTAGAGAA-------T--GGA----AAAA----A-TA--CAT-----ATGGTC--TATATCTGTACATGTACCCCCTCCCTTTCT--C-attgcaaagcgtctttaatgcacatgcatttacttatagatagtatgtagtgtttgcacttacaacaggttaaaacaacgataatcatgatctcattaagttaaacatatcgtatttgatattttgaattaatggatactgattgatcacaatacttcaatcttaaataggcgaaaacttctggcatctaaatatttgtgcatgaatcttacacgtgtacatgtattatttagattaagaatgagatgatattttaattctactcaaaaacaaattctcaattagccttttacctctttcatatatttttttaaataaatctgccaattactatagtcataaacttcacctccgttttcatttactctgtttcaatcttttctgctgtatctcttggggttcaacactaatccgcaaccaaggataacggtgcatgtacgaacgttcactttacataaattgatccaaaaaagaggcaaaccttttataatttttggacacgtttgcctcaa
gi|8 : agttttacagtaagctattgTCCAAATCAGCCAATCAAAATCAAGAAATCCAATACT-CAAATTAC--CTATTAGTAGTTAATAGACCCAAGCAGCATGATGA-TTTGCGGTATGAAAATACATATTAGTT-GTAGGGGGAAATGATTAATATTACTG-AAAGTGT-CAGTTGT-AGAAAAAAAAGGTAGGAGAAAGGGCAGGTTTCTTGGTTCCACGTGTA-ATGG-CA-CATTAGGGTTA-TGAGGAAAGTCGATTCC-GTTGTATTT-AT-GAATTAT---T-CCTTCCACCTTAAGA--TTTTTAGATTA-ATAAAATATAAAATACATTTATCTTTCT-GTAGATAAATATTTTCTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAA-ATACAACTTTA-ATGCAAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAGATATTTATAGATGACCTATT-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTGAAAGTTTTgtggcaagacaaccatgtatttaaacataatacagagtacaacaggttgtgtggtatgtataaaacaacggtgattcatgattttattttaaaagccaacaagacaaacatcttgtgtgtttttttatttattataattgtgtgtagtttatcttatattactaatgaagactgggtgtccgcagcactcaatcctacatgtactgtaagtaggttaaagcatttggtagtttaactctaatctaaatacttttcgagtctttttagtaataattggattaaatataggtataaatttcatcttagttttcattggttctgtttcagttgttttcccccgctgtatatctctttggtttcaacattaatcagcaggataccagtacatttacgaacctcccctttccataaattgatcctaaacgatgtaagcctt
gi|9 : aatcccagattcaagatatcaatAA---TGTATTTT--A-------TTC-----AG-AA-T--T---TAGA------A-A-TT---------------TG----TTTACAAAC------------------GTGAGA-GCAG--C--GAC-AC--TTGC--A----GGCAGGGAA-------------------------A-CA--CA------AGGGTT--TGTA-----AC------CCCCCCCCCTCCT--CGCCCATTCACCACCCCACCCTCACCGTTTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--CACA------------AATGACA--Gtgttgatttggaaataatgtttcattttaacacctttgaaat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTTTTCTTCGCTGTACCTCTTCGGGTTCAACACTAATCCGCAGGATACCGTTTCATACGAACTTTAACTTCACATAAATTGATTCCAAATGAGGCAAACCTCTTATACACATCGGATTCGTTTGCTTTTTCAAAAATATCTGTGCTGTATAATTATATATTGAACCAAATTGAAATTCAAGTTCAATTATCTTGAAAATATCCAGTTCGATTAAAAGCCAATTTGATTTTTTTAAAAGCTATGTTAGGGGGACATTGTTGGAAAAATTATTTTGTCTTTTCGATGTACGTTGCTTC
Unaligned ( gi|16 ): GTTCAACACAGGTGCACAGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACCTTTCAGACACTTTGCGCGTATTCGCTTTAAAATTTGATGTGGTACATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGATAATAAGCGAATTTCATTAAGATAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|17 ): TCAACACGGTGCAACGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACTTTCAGACACTTTGGCGCGTATTCGCTTTAAAATTTGATGTGTACAATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGGATAATAAGCGAATTTATTAAAGTTAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|21 ): TGACCGCAGCACTCATATTCCAAATAGACTAGGACTTCTGGCAGTTTATTTTTAATTCAAATACTTGTATCTTACATGTATCATTCAGATGAATGAGATGACCTTTAAATTCCATTCAAATATACATGTAAATTCTCTGTCAGTCTTTTAGATATTTCATATTATATTTGTTAATTTCGTTTAATAGAAATATAAATTTCACCTTC
Unaligned ( gi|23 ): GCTGTGTCTCTTCAGGTCCAACACTAATCCGCAGTTTAAGATACAGGTGCATGTATACCAACTTTCACAACACATAAATTTATCTCAAATAAACAAACATTTAAAACATTTTTGACCCGTGTGTTTTAAAATTTATGCGACACATAAATGTATATGTTCCAGACGTTTAACTGAATTCAGATTCAACTT
Unaligned ( gi|24 ): GGTGCTGCTAAACGTGAAGAAAACCGAAAGAAACGGAAAATGGAAAACAATTTAAGAAATGAATTAAAATTGTTAATATAGATAAGATAACACCAACAATAGGAAAAATATGTTTTATATCAATATAAATAAAATGAAAGGAATTTGTTTATAAGCAGT
Unaligned ( gi|31 ): GAAACAGGTAAAATTTGTCGATTGAGAACAGGCTTTGAGATGAAGAAATGTGAATTATGGGCTGTTTGCTATTTTCACAA
Unaligned ( gi|32 ): CCTACGCCTTGTGGGGGAAATATTTCAGTACATGTATGTAGATTATTCA
Alignments
lowQualScore : 2222 777777777777777777777777777777777777777777777777777777777777777777 11 44444444 1 1 1 1 1 1 22 11 1 1 222 1 1 1 1 22 1 1 2 11111 22222 2222 1 222 1 33333 22 11 11 1 2 1 1111 11 1 88888888888888888 1 11 1 3333333 44444444444444444444444444444444444444444444444444444444444444444444444444444444 555555555555555555555555 11111 3333333 7777777777777777777777777777777777777777777777777777777777777777777777777777 22222222222 11111 222222222222222222 555555555555555555555555555555555555555555555555555555555555555 22222222222222222 2222222222222222 2222222222222222222 111111 111 333333333333 1 111 111 33333333 1 1 888888888888888888888 2222 111 1111 333333 33333
lowQualScore : 4444 555555555555555555555555555555555555555555555555555555555555555555 7 88 7 66666666 7 3 3 3 3 3 3 6 2 7 00 7 88 3 6 7 6 3 333 3 3 7 3 7 6 3 6 00 0 0 3 0 88888 55555 3 3 3 0000 1 0 999 7 3 33333 7 55 7 88 7 88 2 0 0 4444 33 1 88 8 0 0 1 5 3 888 33333333333333333 0 3 88 3 7 7777777 7 1 6 5 5 0 6 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555 3 0 4 444444444444444444444444 4 44 88 7 3 3 7 22222 3 1111111 777 4 8888888888888888888888888888888888888888888888888888888888888888888888888888 5 33333333333 5 3 22222 4 777 4 333333333333333333 7777 77 555 888888888888888888888888888888888888888888888888888888888888888 2 33 66 5 33 6666 5555 2 44444444444444444 5555 2 33 66666 1 33 4444444444444444 9999999999999999999 4 0 111111 666 444 4 8 4 66 000000000000 66 88888 8888 5 9 0 6 55 777 777 66666666 0 0 3 8 222222222222222222222 66 1111 3 777 4444 0 888888 33333
lowQualScore : .... .................................................................. . .. . ........ . . . . . . . . . . .. . .. . . . . . ... . . . . . . . . .. . . . . ..... ..... . . . .... . . ... . . ..... . .. . .. . .. . . . .... .. . .. . . . . . . ... ................. . . .. . . ....... . . . . . . . . ................................................................................ . . . ........................ . .. .. . . . . ..... . ....... ... . ............................................................................ . ........... . . ..... . ... . .................. .... .. ... ............................................................... . .. .. . .. .... .... . ................. .... . .. ..... . .. ................ ................... . . ...... ... ... . . . .. ............ .. ..... .... . . . . .. ... ... ........ . . . . ..................... .. .... . ... .... . ...... .....
lowQualScore : 0000 000000000000000000000000000000000000000000000000000000000000000000 3 33 3 00000000 3 3 3 7 3 3 3 7 0 3 77 3 33 3 7 3 7 3 333 3 3 3 3 3 7 3 7 77 0 0 2 0 55555 00000 2 2 2 8888 2 0 000 3 3 33333 3 33 3 33 3 33 8 0 0 8888 88 0 88 0 8 8 0 0 7 000 77777777777777777 7 3 33 3 3 7777777 3 0 7 7 7 4 6 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111 7 9 0 444444444444444444444444 0 88 77 3 6 6 3 77777 6 0000000 000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 22222222222 0 6 55555 5 888 4 222222222222222222 3333 99 888 111111111111111111111111111111111111111111111111111111111111111 9 99 33 3 77 3333 7777 6 55555555555555555 3333 5 44 22222 4 44 1111111111111111 3333333333333333333 0 7 555555 222 666 4 9 4 99 666666666666 99 44444 9999 7 2 0 5 88 555 000 00000000 0 0 2 8 555555555555555555555 55 2222 2 555 5555 7 333333 33333
consensus : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-C--CT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGTG-ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCG----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT--C-CCC--------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
Reference ( family-1084 ) : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-C--CT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGTG-ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCG----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT--C-CCC--------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
gi|1 : TACGAAAGCCAGGAAGCTT----GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAAGT-----T--TAA-----A-TAGATCCAAGC-GGGTG-TGT-TT-G-GGCGTGAAAATACATAT--GTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACA-TTGT-AGATAAAA---GT-GGA-AAATGGCAG-TTTCTTGGTTCCACGTGCATGTGGGTA-CATTAGT--T--TGAGGAAAG-CGATTCT-GTTGTATTTTATAGAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATGTAAAATA---AATACATTTTACTTTCG-GTA---AAATATTT-CTGGTTTTT---TTTGCCATGCAAGAATTTATATAATTATACA--TTTATATCAAA--TCAAAGATAAATATAGAAAGCATAGGACATGGTAG-TATTTATA-ATGACTT--T-AAATGTG--TAACCACTTTTT--ATT-TTTATATTGAA-GTTTTGAAATGAT-CTGTCACGTGATCTCATAT-TAACCATT-------TCGAGTCG-AATGA--CTGGATG-----CTCTCC---T---CTAATAA--AAAAAACG-GTA-T-TGTTTACACGCT-GATCAGAAAATGGAA-C--G----A-----AATC---GAATAGTA-A-A-T-----G-ATCA-A------TGCA----ATGTAGTTTTAA-AA--AATACTAAAAA-TCGGGCGGGGGTGGGGGG--GGGGGTGGATACTT-CATTTTAA-TCGAAAT-CAG-AA-T-TTAG-GA-----ATTTGTTT-GCAAGCA----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AAC------------------G----A-GCAG--C--GAT-AT--TTAC--G----GGCAAAGAA-------C--ACACCCCGGGA----A-CA--CAC-----AAGGTT--TGTA-----AC----ATCCCCCCCCCCCCTCCC-CCC--------CCCC-CCCT------TTA--CGGA-G-CA-AA-CTTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGGAG-TCAGGGTGGGGG---AAGTTACCGAT--TAATTC----AGC-TATA-GTTATATACATGTACG-------------------TTACAATAAATA----TGGCCACA---AGAAAGAGGGGGGGGGGGGGGGGTGCGGGGCTAAATC-----CGCCTAT
gi|10 : --AACACCAAAAAATTAGG----------AAA--A----T--ATATTT-TATTTCAA-TCATAAT-CAA-CA-TATCAG-GA-----ATTTGTTT-ACAAGCGGTCCTGTAAACTTGTTATAC-TATATAGTA---TTG--------------AAGG-----------------T-------------T---------------GA-AA---T-------G-TA---------AGAGTTTAC-TCGT--G-------T-------AG-CG-T--T---T-TACA-AGGA-T-CTTTTGACGGCTCCGGGTG----TT----AGC------------------T----A-GTCG--T--GAC-AC--CTATAAG----GGTAGAGAA-------TGAGGA----AACA----C-CC--CAC-----AGGGTT--T--------------ACCCCCTACCTTCCT--C-g
gi|11 : aagaaatagaaaaaaataagtatagctacatgtacaggtG-GCG-T-TGCTAAAACGTG-GAACGTAAAACGGAA-CTGG----AC----G------GAAT-ATA-ACATT-----G-ATTATA------T--------TGTAGCTttgtgaccaaacctttaacatatatatgtacatgcttttacacatttataaagcagtgtatgagtgcctttacaatagggagtgtggtacatgtatgtataaagaacgata
gi|11 : aaatgg-------T-C-----GG-AA-T--T---CA-----AAAA-A-GT---------------T-----TT----AGC------------------A----A-ACAG--C--GAA-ACCTTTGC--GATTGGGTAGAGAG-------T--GGA----AAGA----A-TA--CAC-----ATGGTT--T--------AC----CCCCTCCCCCCTTCT--C-aatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataatttcggaattcaaaaaagttttagcaaacagcgaaacctttgcgattgggtagagagtggaaagaatacacatggtttaccccctccccccttctcgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|12 : aaatggggcgttgctaaaacgtggaacgtaaaacggaactggacggaatataacattgattatattgtagctaatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataattAACGGGA-C--GG---AC----AAT----GAA--ATA-A-A-A-----C-ACTA-A--------------ATTTAGAATGAA-AAT-AACACCAAGAA-TTGGG------------------GGTATATGCTT-TATTTCAA-TCAAAAT-TAA-CA-T-TTAAAGA-----CTTTATTT-ACAAGTG----CT-AAA---ACAATATATATATAATTATATTG--------------AA-TA----------------T-------------T---------------GATAATATGAATATTTG-TATAACTATTTAAG---CGT-TTAT--A---------C-----AGCGG-T--T---TAC-TAGAATA-A-AT---------------TG----AC----AGC------------------G----A-GCTG--C--GATAAC--TT-T--G----GGTAGAGAA-------T--GGA----AATAATGTA-CATGTAC-----ATGATT--TATA-----A--------CCGCCTCATCCT--A-CCC--------CACT-CCTT------------GTG-G-CA-AA--ACC-TTTCAATgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|13 : ggG-GTG-T-TACTAAAACGCG-GAGCAGAAA-----------------------TT-----AT-----A-A-T-----G-ATTA-A------TG---------TAGT---AA-AGGTAACACCAAAAA-TCTGG----------AAA--------C-ATGTTT-TACTTTAA-TCAAAAT--------T-TTAG-GAC----ATT--TTT-AAAAGCG-----GCAAA---ACAA-CT-TAGAG-------CTA--------------AA-T-----------------T-------------T---------------acatgtatgtagactatttacacgtaatacagga
gi|13 : tggaattcagaaatatatacg-C-----AG-AAGTG-T---TACATA-------------------------TG----T-----AGC------------------G----A-GCAG--C--GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGCCT--T--------AT----ATCCCCCgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgacagaagtgttacatatgtagcgagcagcgacacctgtgggttaagaatggaaagaacacacaggccttatatcccccttatttgtggcaaaacgt
gi|14 : tggaattcagaaatatatacgggtgttactaaaacgcggagcagaaattataatgattaatgtagtaaaggtaacaccaaaaatctggaaacatgttttactttaatcaaaattttaggacatttttaaaagcggcaaaacaacttagagctaaatttgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgaAGA-A-AT---------------TG----TTTTAAAG-------------------G----A-CCAG--CCGAAC-AC--T-GC--G----GGCA----------------------AAGT----A-TA--CAT-----AAGGTT--TGTA-----AC----ACAACACCCACCCCT--C-TC------------------------TTC--CGGA-G-CA-AAGCGTCTTTTAAATCGAGGAATAAATTAATATTACCATGACA--GC-ATGGGG-G--CGT-AGttatttgtggcaaaacgt
gi|18 : tcttttaaaatcaatgagccataattcatttccaaaatatttgaattctacattcatgatattaaaagattaaatcggaatctagtataagaactttaacatgaagaatcttgaaaaattcggcattattggG--------------AA-T-----------------T-------------T---------------AG-AA---A-------G-CGTA-----T-------TGC-TTTT--AAGAAATGT-C-----GG-TA-T--C---GACATA---TG-A-CT---------------TA----T-------C------------------G----A-GAAG--C--GAC-AA--TCGT--G----AGCAGAGGA-------C--GTA----AAGC----A-CA--CACAGTTAAGGGTT--TATA-----TC----TCCCTCTCgttccgttggagggcaaggggtaatccccagtttttgaaaagtaagttatgtga
gi|19 : aatcggggaaaatatgctgtactagtttaaggaatttgataacaggtgtttaacaagttagattaagagactgtaaaataaatttattttgataagctattctaattattatgagaCCT--C-TCC--------TCCA-TTTT------TTATACGGATGTCA-AA-CTTC-CT-AAATCAA--AACA------------CATGCCACTGCAAT--GG-ATCCGTCAGTAGCTCGGGGTGGGGGGTAAAGTTAGTGATTCTAATTTTCCAA-CATATACG-TTAATAAATCTACGACCCTTCTGTAACTGGATTTTAC-ATAAATACTACTGACC-CACTCAGACAGA----GGGGGGGTGGGGCT------TAAATTTTTCACGCCTATgtggcaaaacgtct
gi|2 : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCA-TCAAAAACAAGAATCC--ATACTTCAAATT-CTCCT--TTGTAGTTA-TAGACCCAAGC-GCTTG-TGAATT-GCGG-ATGAAAATAC-TAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTAAAGTTGTCAGAAAAAA---GT-GGA-AA-GGGCAG-TTTCTTGGTTCCACGTCTATATGGGCATCATTAGTGTTACTGAGGAAGT-CGATTCCCGTTGTATTTTAT-GGATTAC---TTCC-----CCTTAAGAAATTTTTTGATTATATAAA-TA---AATACATTTATCTTTCTCGTAAG-AT-TATTT-CTG-----TAAATTTGCCAAGCAAGAATTTA--TAAATACATA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACTGTAG-TATTTATA-ATGACTA--T-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTTGAAGTTTTatgacataaatgttgct
gi|2 : gAA-TTGGG----------A-ATTGGGGGT---------CATTTAAAATCGAAAT-AAAGAA-A-TTAG-GA-----ATTTGTTTTAAAAGCG----TT-GAA---ATTATCT-GATAT-------TTG--------------AA-T-----------------TCTACAGCATGAATT---------------AA-AA---G-------G-TAAA-----TCAAA---TGC-TTGT--A-------T-A-----AG-AG-T--T---TACATG-AAGA-ATCT---------------TGAACATC----GGCCTTGGGTAAAATTGTTAAG----A-GCAG--C--GAC-AC--TTG---A----GGC------------------A----AAGA----A-CT--CAC-----A-AGTT--TGTA-----AC----ACAACACCCCCT-------------------------CT------TTT--CGGA---CACAA-TGTC-TTTAAATCAA--CACAC-----------CATGACA--GC-TT--GG-G--CGT-tgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggtcatttaaaatcgaaataaagaaattaggaatttgttttaaaagcgttgaaattatctgatatttgaattctacagcatgaattaaaaggtaaatcaaatgcttgtataagagtttacatgaagaatcttgaacatcggccttgggtaaaattgttaagagcagcgacacttgaggcaaagaactcacaagtttgtaacacaacaccccctcttttcggacacaatgtctttaaatcaacacaccatgacagcttgggcgt
gi|20 : gtacgaaagccagaaggctcattcgcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatccaaatcagccatcaaaaacaagaatccatacttcaaattctcctttgtagttatagacccaagcgcttgtgaattgcggatgaaaatactatagtttgtagggggaaatgatatatactggaaagtgtaaagttgtcagaaaaaagtggaaagggcagtttcttggttccacgtctatatgggcatcattagtgttactgaggaagtcgattcccgttgtattttatggattacttccccttaagaaattttttgattatataaataaatacatttatctttctcgtaagattatttctgtaaatttgccaagcaagaatttataaatacatatttatatgcaatctagggtaaacattgaaagcataggacactgtagtatttataatgactataaatgtgtcacaacttttttatttttatatttgaagtttttgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACGAGTG-T-TGCT--AACGCG-GAACGAAAAACGGAA-CGGG----ACGGAAAACG---GAAC-G-A-A-A-TTTAAGA-ATTA-AAATTATTG------ATGT--TGCTAA-GAT-AACACC-AAAC-TC--------------GA--GGAAATG--TGCTT-TATTTTCA-TATAGAT-AAA-AG-T-TTTT-GATGTATATGTATTT-ACA
gi|22 : atgatatgtacagcCAAAAT-AAA-AA-T-TTTG-GT------TTTAATT-ACAAGCG----GT-GAA---ACAATTC-TATGA-------TTA--------------AA-TGCTACAGCATGATTTAAT-------------T---------------AA-AA---G-------G-TAAG-----TGAAA---TGT-TTGTAGA-------C-CTGTATAG-AG-T--T---TACAcataacacagtatgtgtatacttacaacagggagtgtggta
gi|25 : CG-GAAAGGAAAACGGGA-A--A----A-----AATCA--GAAT-TTAGA-A-T-----G-ATCA-A------TGCGACTAAACCAGT------AA--AA----AAAAA-TCGGA----------AAA--A----T---TGCTTTCATTCCA--TCAAAAT-CAA-AAGT-TTTG-GA-----GATTATTT-GCAAGCG-----ATAAA---ACAATTT-TATA--------TTG--------------AA-T-----------------gagcaatttacaagaatcttgaaatttcagtattgataaaatgtttaaaagcagcaatacctgtgagtaaaaa
gi|26 : ggaaGAAAATGGAA-C--G----A-----AATC---TAATTGTA-A-A-T-----G-ATTA-A------TG---------TAATTT--------------AAAAA-TCGGG----------AGG--GGGGGGG-ATACTG-CATTTTAA-TCGAAAT-AAG-AA-T-TTAG-GA-----AATTGTTT-GCAAGCA-----TTAAA---ACAATCT-TATAaatatt
gi|27 : aAAG-CGATTCC-GTTGTATTTTATTGAATTACCCCT-CC-----CCCTAAATAATTTTCTAATGATATAAAAT----AATACATTTGTCTTTCT-
gi|28 : ggcacaatatagtgac--T---TACATA-------------------------TG----T-----AGC------------------G------GCAG--CC-GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGCCT-----------AT----ATCCCCCtttgtacgt
gi|29 : aatgacgaagtg--GAC-AC--TTAT--G----GGTAGAGAA-------T--GGA----AGGA----A-CG--CAC-----CGGGTTAATGTAT----AT----ATATGTGCCCCTC----C-CCG--------CCCC-CATT------TTC--ttatttgtggcaaaacg
gi|3 : gaaagGA----A-CA--CAC-----AGGGTT--TGTA------C----ACCCCCCCCCC-------------------CCCC-TTGT------TTT--TGGA-A-CA-AAACGTC-TTTAAATCAA--CACA------------CATGCCA--GT-GT--GGTA--TGT-Aatgttgacaaaacgac
gi|30 : TG-T-TGGTAAAACACG-GAACGGAAAGCGGAA-T--GGAACGC----AATTTAAGAAT-TAA-A-A-T-----A-ATTA-A------TG------tataagtcaacaagttttaacatcatcttttttaactaacaaggtcttcgtgtccgcagcactgcaatcctgaatagtaggctagatatttctaatctaaatacatgtacgtgtatcttatcactagattaataatggaaagaccttgtaattccactaaaacataaattctctgttaatattctaactatttcatacatcatgaaatagatttaataattcctttcaaaaggatcataaattccattttctttctttggaggggtggggtggggggctattgttactcttttatttccttttgttattgaattttttttttttcaccctctgtatcttgtaggggtcaaccagttcatgtacgtacattcacttttcataaatcgatctcaaatggggcaaacctttcacataccggattcgctcgctttagaattcaatatgatagataataattattatatcaagtgcagaactaaaatcaaattccatttaatatcgtcttaaaatatcccattcgattaaaagcaaattcgattaaagaaggctatgttagatggaaatcgttcaaaaattatcattctatctttttcaatatatatagatagactatcataa
gi|4 : caagacaagtagatGACAT-GTAGCTATTTATA-ATTACTT--TTAAATGTGACTAACAACTTTTTTTATTATTTATATTGAAAGTTTTtagctaagatgctacc
gi|4 : CTGTCACATG-TTTCACATGT--TCATTAAATTGACTGAGTCGGAAAGA--CTG-ATGTGTTCCTCTTTAAAT---CTAATAATGCAAAAACG-GTG-TATGTTTAAACGCT-GAACAGAATATGAAAAC--G----AC----AATC---GAA--GTA-A-A-T-----GTAT------------------ATGTAGTTTTAA-CA--AATACTAAAAC-TCGGG----------AGA--GGGGGTG----CTT-CATTTTA--TCGAAAT-CAACAA-T-TTAG-GA-----ATTTGTTT-AAAAGCA----TTGAAA---A-AATCT-TATAT-------TTG--------------AA-T-----------------T-------------TCTTACAGCATAAATTAA-AA---C-------G-TATA-----TCAAA---TGC-TTGTT-A-------T-C-----AG-AA-TATT---TACATA-AAGA-ATCT---------------TG----TTT---AAC------------------GC---A-GCAG--C--GACCAC--TTAC--G----GGCA-AGAA-------C--ACACCCCAGGA----AACA--CAT-----AG---T--TGTA-------------TCCCCC----------------------CCCC-CCCT------TTC--CGGA-C-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AG-AG-TC-GGGT-GGGG---AAGTTACTGAT--ATATTT----A-C-TATA-G-TATATAATTGTAC--------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGAGGGGGGtcttggtcaggaaatatatatcttcaataacaatcctcattaaaactgtcacatgtttcacatgttcattaaattgactgagtcggaaagactgatgtgttcctctttaaatctaataatgcaaaaacggtgtatgtttaaacgctgaacagaatatgaaaacgacaatcgaagtaaatgtatatgtagttttaacaaatactaaaactcgggagagggggtgcttcattttatcgaaatcaacaatttaggaatttgtttaaaagcattgaaaaaatcttatatttgaatttcttacagcataaattaaaacgtatatcaaatgcttgttatcagaatatttacataaagaatcttgtttaacgcagcagcgaccacttacgggcaagaacacaccccaggaaacacatagttgtatcccccccccccctttccggaccaaacgtctttaaatcaaaacacatgacagcatggacgtagagtcgggtggggaagttactgatatatttactatagtatataattgtacttacaataaatatgaccacaagaaaggggggaggggggtg
gi|5 : gacatgtagctatttataattacttttaaatgtgactaacaactttttttattatttatattgaaagtttttcttggtcaggaaatatatatcttcaataacaatcctcattaaaaAACTCTCTT-ATC-T----------AGTCTTATAATGACGCAATTACTTGAAATCATA----------G--TT--CTGAGTCG-AAAGATTCTG-ATGTGTTCCTCTTT---TAAATTAATAATGGCAAAACG-GTGAT-TGTTTAA-CGCCTGAACAGAATATGAAA-C--G----AC----AATC---GAA--GTA-A-A-T-----GTATTA-----------------TGTAGTTTTAACAA--AATACTAAAAC-TCGGG----------AGA--GGGGGC---TGCTT-CATTTT-A-TCGAAATCCAC-AA-T-TTAGCGC-----ATTCGTT----AAAGA----TT--GA---ACAATCT-TAT-T-------TTGCTTCTATAGACATAAA-T-----------------TA------------C---------------AA-AA---G-------GCTATA-----TCACA---TGC-TTGT--A-------T-C-----AG----T--TTAGTACATA-AAGATACCT---------------TGT---TT----AAC------------------G----AGGCAGCAC--GAC-AC--TTAC--G----GGCAACGAAACACACCC--CGC----AGGA----A-CA--CAC-----AGGTGT--TGTA------------------------------TCC--------CCCC-CCCT------TTC--CGGA---CA-AA-CGTC--TTAAATC----AACA------------CATGACA--GC-A---GG-A--CGT-AGTAG-TCGGGG-GGGGG---AAGTTACTGA---TAATTT----G-CTTATA-G-TATAT-AAT-TA-G-------------------TTACA--CAATA----TGACCACA---AGAAA----GGGGGGGAGGGGGGTG------TAAATC-----CGCCTATtg
gi|6 : a-GTAG--C--GA--AC--CTAT--G----AGTAGTGAA-------T--AGA----AAGA----A-CA--CAC-----ATGATT--TAT------AT----GCCCCGCTCCCTCTT--aaactaacatgtgcttgaggccgggcggatgaagaaaactgtgaattaatgggctgtgtttgcctatttccaggttcacaag
gi|7 : ACA-AAGA--------------------TG----TT----GGT------------------G----A-ACAG--C--GAC-AC--CTAT--G----AGTAGAGAA-------T--GGA----AAAA----A-TA--CAT-----ATGGTC--TATATCTGTACATGTACCCCCTCCCTTTCT--C-attgcaaagcgtctttaatgcacatgcatttacttatagatagtatgtagtgtttgcacttacaacaggttaaaacaacgataatcatgatctcattaagttaaacatatcgtatttgatattttgaattaatggatactgattgatcacaatacttcaatcttaaataggcgaaaacttctggcatctaaatatttgtgcatgaatcttacacgtgtacatgtattatttagattaagaatgagatgatattttaattctactcaaaaacaaattctcaattagccttttacctctttcatatatttttttaaataaatctgccaattactatagtcataaacttcacctccgttttcatttactctgtttcaatcttttctgctgtatctcttggggttcaacactaatccgcaaccaaggataacggtgcatgtacgaacgttcactttacataaattgatccaaaaaagaggcaaaccttttataatttttggacacgtttgcctcaa
gi|8 : agttttacagtaagctattgTCCAAATCAGCCAATCAAAATCAAGAAATCCAATACT-CAAATTAC--CTATTAGTAGTTAATAGACCCAAGCAGCATGATGA-TTTGCGGTATGAAAATACATATTAGTT-GTAGGGGGAAATGATTAATATTACTG-AAAGTGT-CAGTTGT-AGAAAAAAAAGGTAGGAGAAAGGGCAGGTTTCTTGGTTCCACGTGTA-ATGG-CA-CATTAGGGTTA-TGAGGAAAGTCGATTCC-GTTGTATTT-AT-GAATTAT---T-CCTTCCACCTTAAGA--TTTTTAGATTA-ATAAAATATAAAATACATTTATCTTTCT-GTAGATAAATATTTTCTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAA-ATACAACTTTA-ATGCAAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAGATATTTATAGATGACCTATT-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTGAAAGTTTTgtggcaagacaaccatgtatttaaacataatacagagtacaacaggttgtgtggtatgtataaaacaacggtgattcatgattttattttaaaagccaacaagacaaacatcttgtgtgtttttttatttattataattgtgtgtagtttatcttatattactaatgaagactgggtgtccgcagcactcaatcctacatgtactgtaagtaggttaaagcatttggtagtttaactctaatctaaatacttttcgagtctttttagtaataattggattaaatataggtataaatttcatcttagttttcattggttctgtttcagttgttttcccccgctgtatatctctttggtttcaacattaatcagcaggataccagtacatttacgaacctcccctttccataaattgatcctaaacgatgtaagcctt
gi|9 : aatcccagattcaagatatcaatAA---TGTATTTT--A-------TTC-----AG-AA-T--T---TAGA------A-A-TT---------------TG----TTTACAAAC------------------GTGAGA-GCAG--C--GAC-AC--TTGC--A----GGCAGGGAA-------------------------A-CA--CA------AGGGTT--TGTA-----AC------CCCCCCCCCTCCT--CGCCCATTCACCACCCCACCCTCACCGTTTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--CACA------------AATGACA--Gtgttgatttggaaataatgtttcattttaacacctttgaaat
blockSeqs : ATTC NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA A CA T ACCTAT T A A T A A T C T A TA T TA T G A G C AAG A G A G T G T G AC T C T T CCCT TTCCA A T A ATAA A C GAT A T . A C T AC T GC T C G ATT AC C TT A T G A AAA TGTTCATTAAATTGA G TT . T AAAT T C A A A A T CGGGACGGAAAACGGAACGAAATTTAAGAATTAAAATTATTGATGTTGCTAAGAT C A AGGGGGGGGGA T AA CC G G A A TGTAT T GTCCTGT CTT A ATTAAATGCTACAGCATGATTTAATT T TATGAATATTT C T ACTAT T GTT A AAGAAATGTC CGG AT TAG AAGAATCTTGAACATCGGCCTTGGGTAAAATTGTTAAG G CA CG A CT ATAA ATTG G ACACACCCCGC ATGT A TG AGTTA G AA ATATCTGTACATGTAC TCCTCGCCCATTCACCA A CACCGT ATA TGT C G T GG AATTAATATTAC CT ATGG ATC C T C G TG GTA TTC TCCAACA C . A C CGACCCTTCTGTAACTGGATT AA CTAC A CTC GGGG . TTTCA
blockSeqs : . . . CTCCT T . . A . . . C . . A . . . . . G . . . . . . . . . G A . . T . TT . A T A A G . AG . . . A . . . . . C A . TT . A T . T TT GTT . . . T TAAA T G . . . A . AAAAATCAGAATTTAGAATGATCAATGCGACTAAACCAGTAA C . AATTGGGGGT . A C C . . C C . TTG . . TTTGAATTTCTTACAGCATAAATT . T . T . C . . AGACCTGTAT AAG G . AGGATCTTTTGACGGCTCCGGGTGTTAGCT . . C C . GC . G CACACCCC . . . . T . GTATATAT TCCTACCC . . C G . A . . C . AAT TA . T . G T . T GCT . . A G C A . A . GA . .
blockSeqs : . . . . T . . . . . A . . . . T . C T . . . . A . CGGACAATGAAATAAAACACTAAATTTAGAATGAAAAT C . AGAGGGGGTG . A T . . . . . . CT . . TTTGCTTCTATAGACATAAATTAC . A . A . G . . TATC CG . . AATTTGTTTACAAACGTGAG . . . . . GT . G TGAGGA . . . . T . GTAACAC CCCTCTC . . T G . . . . . . TT G . . . . G . . AC . . . . G A . . . .
blockSeqs : T . . . . T . CGACAATCGAAGTAAATGTATTATGTAGTTTTAACAA C . GAGGAAATG . A A . . . . . . GC . . TTTGAATTCTACAGCATGAATT . G . A . C . . ATTC AA . . AAGAATCTTGTTTAACGC . . . . . GC . A TGGA . . . . G . ATATCTC TCCCCG . . C A . . . . . . GT G .
blockSeqs : . . . T . ACGACAATCGAAGTAAATGTATATGTAGTTTTAACA T . AGAGGGGGC . A A . . . . . . TT . . TAATTATATTGAATATT . G . T . C . . ATA TA . . AAGATACCTTGTTTAACG . . . . . GT . G TGGA . . . . A . GTAACAC TCC . . T C . . . . . . AT A .
blockSeqs : . . . . CGAAATCTAATTGTAAATGATTAATGTAATTT T . AAAATA . A A . . . . . . GT . . TAGTATTGAAGGTT . C . T . . . . ATC AG . . GAATAAATTGACAGCG . . . . . GT . A TGGA . . . . G . GTACAC T . . C G . . . . . . A A .
blockSeqs : . TTATAATGATTAATGTAGTAAAGGT . . GGTATA . A C . . . . . . AT . . GCTAAATTT . G . . . . . . GT AG . . AAAAAGTTTTAGCA . . . . . AT . G CGTA . . . . G . ATATGC . . . C . . . . . . .
blockSeqs : . . AAACA . . A . . . . . . TT . . . . AC AA . . AAGATGTTGGTG . . . . . AC . A TGGA . . . . G . GTAAC . . . C . . . .
blockSeqs : . AAAAT . . C . . . . . . TT . . AA . . TGACTTATCG . . . . . AC . G TGGA . . . . G . ACCC . . .
blockSeqs : . . . . . . . . . . TGTAGCG . . . . . AT . G TAGA . . . . G . ATAA
blockSeqs : . . TGTAGCG . . . . . AT . G TGGA . . . . G . ATAT
blockSeqs : . . . . . GC . . A . . . . T . ATAT
blockSeqs : . . . . . T . . . . . . . T . GTA
blockSeqs : . . . G . . . . . . . G . GTA
blockSeqs : . . . . . . AC
blockSeqCons : T* AGAGGGGGTA************** NT***** ATC*************** TGGA************* GTAACC********** TCCC***************
originalCons : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-C--CT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGTG-ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCG----TTTAAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-----AC----ACCCCCCCCCCTCCT--C-CCC--------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
finalCons : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-C--CT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-ATTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGGAGAGGGGGTA--------------TGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TTAG-GA-----ATTTGTTT-ACAAGCGNT-----AAA---ACAATCT-TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGTATC---------------AG-AA-T--T---TACATA-AAGA-A-CT---------------TG----TT----AGC------------------G----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAATGGA-------------AAGA----A-CA--CAC-----AGGGTT--TGTAACC----------CCCCCCCCCTCCC---------------CCCC-CCCT------TTC--CGGA-G-CA-AA-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTTTTCTTCGCTGTACCTCTTCGGGTTCAACACTAATCCGCAGGATACCGTTTCATACGAACTTTAACTTCACATAAATTGATTCCAAATGAGGCAAACCTCTTATACACATCGGATTCGTTTGCTTTTTCAAAAATATCTGTGCTGTATAATTATATATTGAACCAAATTGAAATTCAAGTTCAATTATCTTGAAAATATCCAGTTCGATTAAAAGCCAATTTGATTTTTTTAAAAGCTATGTTAGGGGGACATTGTTGGAAAAATTATTTTGTCTTTTCGATGTACGTTGCTTC
Unaligned ( gi|16 ): GTTCAACACAGGTGCACAGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACCTTTCAGACACTTTGCGCGTATTCGCTTTAAAATTTGATGTGGTACATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGATAATAAGCGAATTTCATTAAGATAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|17 ): TCAACACGGTGCAACGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACTTTCAGACACTTTGGCGCGTATTCGCTTTAAAATTTGATGTGTACAATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGGATAATAAGCGAATTTATTAAAGTTAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|21 ): TGACCGCAGCACTCATATTCCAAATAGACTAGGACTTCTGGCAGTTTATTTTTAATTCAAATACTTGTATCTTACATGTATCATTCAGATGAATGAGATGACCTTTAAATTCCATTCAAATATACATGTAAATTCTCTGTCAGTCTTTTAGATATTTCATATTATATTTGTTAATTTCGTTTAATAGAAATATAAATTTCACCTTC
Unaligned ( gi|23 ): GCTGTGTCTCTTCAGGTCCAACACTAATCCGCAGTTTAAGATACAGGTGCATGTATACCAACTTTCACAACACATAAATTTATCTCAAATAAACAAACATTTAAAACATTTTTGACCCGTGTGTTTTAAAATTTATGCGACACATAAATGTATATGTTCCAGACGTTTAACTGAATTCAGATTCAACTT
Unaligned ( gi|24 ): GGTGCTGCTAAACGTGAAGAAAACCGAAAGAAACGGAAAATGGAAAACAATTTAAGAAATGAATTAAAATTGTTAATATAGATAAGATAACACCAACAATAGGAAAAATATGTTTTATATCAATATAAATAAAATGAAAGGAATTTGTTTATAAGCAGT
Unaligned ( gi|31 ): GAAACAGGTAAAATTTGTCGATTGAGAACAGGCTTTGAGATGAAGAAATGTGAATTATGGGCTGTTTGCTATTTTCACAA
Unaligned ( gi|32 ): CCTACGCCTTGTGGGGGAAATATTTCAGTACATGTATGTAGATTATTCA
Alignments
lowQualScore : 2222 777777777777777777777777777777777777777777777777777777777777777777 11 44444444 1 1 1 1 1 1 22 11 1 1 222 1 1 1 1 22 1 1 2 11111 22222 2222 1 222 1 33333 22 11 11 1 2 1 1111 11 1 88888888888888888 1 11 1 3333333 555555555555555555555555555555555555555555555555555555555555555555555555555555555 444444444444444444444444 11111 111111 111 7777777777777777777777777777777777777777777777777777777777777777777777777777 22222222222 11111 222222222222222222 6666666666666666666666666666666666666666666666666666666666 22222222222222222 4444444444444444444444444444444444444444444444 1111 111 1111111 222222222222 1 111 111 33333333 1 1 888888888888888888888 2222 111 1111 333333 33333
lowQualScore : 4444 555555555555555555555555555555555555555555555555555555555555555555 7 88 7 66666666 7 3 3 3 3 3 3 6 2 7 00 7 88 3 6 7 6 3 333 3 3 7 3 7 6 3 6 00 0 0 3 0 88888 55555 3 3 3 0000 1 0 999 7 3 33333 7 55 7 88 7 88 2 0 0 4444 33 1 88 8 0 0 1 5 3 888 33333333333333333 0 3 88 3 7 7777777 7 1 6 5 5 0 6 4 777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 3 555555555555555555555555 3 3 3 99 6 6 3 444 3 11111 3 1 000000 7777 000 5555555555555555555555555555555555555555555555555555555555555555555555555555 5 33333333333 5 3 22222 4 777 4 333333333333333333 7777 77 555 5555555555555555555555555555555555555555555555555555555555 9999 2 33 66 5 33 6666 5555 0 00000000000000000 5555 2 33 66666 4 33 5555555555555555555555555555555555555555555555 3 0 7777 1111 000 3 3 0000000 6 3 66666 444444444444 66 88888 8888 5 9 0 6 55 777 777 66666666 0 0 3 8 222222222222222222222 66 1111 3 777 4444 0 888888 33333
lowQualScore : .... .................................................................. . .. . ........ . . . . . . . . . . .. . .. . . . . . ... . . . . . . . . .. . . . . ..... ..... . . . .... . . ... . . ..... . .. . .. . .. . . . .... .. . .. . . . . . . ... ................. . . .. . . ....... . . . . . . . . ................................................................................. . . ........................ . . . .. . . . ... . ..... . . ...... .... ... ............................................................................ . ........... . . ..... . ... . .................. .... .. ... .......................................................... .... . .. .. . .. .... .... . ................. .... . .. ..... . .. .............................................. . . .... .... ... . . ....... . . ..... ............ .. ..... .... . . . . .. ... ... ........ . . . . ..................... .. .... . ... .... . ...... .....
lowQualScore : 0000 000000000000000000000000000000000000000000000000000000000000000000 3 33 3 00000000 3 3 3 7 3 3 3 7 0 3 77 3 33 3 7 3 7 3 333 3 3 3 3 3 7 3 7 77 0 0 2 0 55555 00000 2 2 2 8888 2 0 000 3 3 33333 3 33 3 33 3 33 8 0 0 8888 88 0 88 0 8 8 0 0 7 000 77777777777777777 7 3 33 3 3 7777777 3 0 7 7 7 4 6 4 777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 6 666666666666666666666666 6 6 7 22 7 7 3 222 3 77777 3 0 777777 7777 000 8888888888888888888888888888888888888888888888888888888888888888888888888888 0 22222222222 0 6 55555 5 888 4 222222222222222222 3333 99 888 7777777777777777777777777777777777777777777777777777777777 6666 9 99 33 3 77 3333 7777 3 99999999999999999 3333 5 44 22222 5 44 9999999999999999999999999999999999999999999999 1 2 1111 5555 555 3 3 8888888 7 3 88888 555555555555 99 44444 9999 7 2 0 5 88 555 000 00000000 0 0 2 8 555555555555555555555 55 2222 2 555 5555 7 333333 33333
consensus : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-C--CT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-A-TTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGT--ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TT-A-G-GA-----ATTTGTTT-ACAAGCGNT-A----AAAC----AATCT---TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-C------------------------T---------------TG-TT----AGCG----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------C--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-------N----CCC----CCCCCCC--CT---C------------CCCC-CCCCC----TTTC---CGGA-G-C-A-A-------A-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
Reference ( family-1084 ) : TACGAAAGCCAGGAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAATT-C--CT--TAGTAGTTA-TAGACCCAAGC-GCGTG-TGA-TT-GCGGCATGAAAATACATAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACAGTTGT-AGAAAAAA---GT-GGA-AAAGGGCAG-TTTCTTGGTTCCACGTGTATATGGGCA-CATTAGTGTTA-TGAGGAAAG-CGATTCC-GTTGTATTTTAT-GAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATATAAAATA---AATACATTTATCTTTCT-GTAGG-AAATATTT-CTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAATATACA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACCGTAG-TATTTATA-ATGACTT--T-AAATGTG--TNACAACTTTTTT-ATT-TTTATATTGAAAGTTTTGNAATGACGCTGTCACGTGATNTCATAT-T--CCATTG--TT--CCGAGTCG-AAAGA--CTG-ATGTGTTCCTCTTT---T---CTAATAATGNAAAAACG-GTG-T-TGCTNAAACGCG-GAACGGAAAACGGAA-C--G----AC----AATC---GAAT-GTA-A-A-T-----G-A-TTA-A------TG------ATGTAGTTTTAA-AA--AACACCAAAAA-TCGGG----------AGA--GGGGGT--ATGCTT-CATTTTAA-TCGAAAT-CAA-AA-T-TT-A-G-GA-----ATTTGTTT-ACAAGCGNT-A----AAAC----AATCT---TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-C------------------------T---------------TG-TT----AGCG----A-GCAG--C--GAC-AC--TTGC--G----GGCAGAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGGTT--TGTA-------A----CCC----CCCCCCC--CT---C------------CCCC-CCCCC----TTTC---CGGA-G-C-A-A-------A-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGTAG-TCGGGGTGGGGG---AAGTTACTGAT--TAATTT----A-C-TATA-G-TATATAAATGTACG-------------------TTACAATAAATA----TGACCACA---AGAAAGAGGGGGGGGGGGGGGGGCG------TAAATC-----CGCCTAT
gi|1 : TACGAAAGCCAGGAAGCTT----GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAAATCAGCCAATCAAAATCAAGAATTC--ATACTTCAAAGT-----T--TAA-----A-TAGATCCAAGC-GGGTG-TGT-TT-G-GGCGTGAAAATACATAT--GTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTACA-TTGT-AGATAAAA---GT-GGA-AAATGGCAG-TTTCTTGGTTCCACGTGCATGTGGGTA-CATTAGT--T--TGAGGAAAG-CGATTCT-GTTGTATTTTATAGAATTAC---T-CC-----CCTTAAGAAATTTTCTGATTATGTAAAATA---AATACATTTTACTTTCG-GTA---AAATATTT-CTGGTTTTT---TTTGCCATGCAAGAATTTATATAATTATACA--TTTATATCAAA--TCAAAGATAAATATAGAAAGCATAGGACATGGTAG-TATTTATA-ATGACTT--T-AAATGTG--TAACCACTTTTT--ATT-TTTATATTGAA-GTTTTGAAATGAT-CTGTCACGTGATCTCATAT-TAACCATT-------TCGAGTCG-AATGA--CTGGATG-----CTCTCC---T---CTAATAA--AAAAAACG-GTA-T-TGTTTACACGCT-GATCAGAAAATGGAA-C--G----A-----AATC---GAATAGTA-A-A-T-----G-A-TCA-A------TGCA----ATGTAGTTTTAA-AA--AATACTAAAAA-TCGGGCGGGGGTGGGGGG--GGGGGTGGATACTT-CATTTTAA-TCGAAAT-CAG-AA-T-TT-A-G-GA-----ATTTGTTT-GCAAGCATTTA----AAAC----AATCT---TATAT-------TTG--------------AA-T-----------------T-------------T---------------AA-AA---G-------G-TATA-----TCAAA---TGC-TTGT--A-------T-C-----AG-AA-T--T---TACATA-AAGA-A-C------------------------T---------------TG-TT----AACG----A-GCAG--C--GAT-AT--TTAC--G----GGCAAAGAA-------C--ACACCCCGGGA----A-CA--CAC-----AAGGTT--TGTA-------ACATCCCC----CCCCCCC--CTCCCC------------CCCC-CCCCC----TTTA---CGGA-G-C-A-A-------A-CTTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AGGAG-TCAGGGTGGGGG---AAGTTACCGAT--TAATTC----AGC-TATA-GTTATATACATGTACG-------------------TTACAATAAATA----TGGCCACA---AGAAAGAGGGGGGGGGGGGGGGGTGCGGGGCTAAATC-----CGCCTAT
gi|10 : --AACACCAAAAAATTAGG----------AAA--A----T--ATATTT-TATTTCAA-TCATAAT-CAA-CA-TATC-A-G-GA-----ATTTGTTT-ACAAGCGGT-CCTGTAAACTTGTTATAC---TATATAGTA---TTG--------------AAGG-----------------T-------------T---------------GA-AA---T-------G-TA---------AGAGTTTAC-TCGT--G-------T-------AG-CG-T--T---T-TACA-AGGA-T-C------------------------TTTTGACGGCTCCGGGTG-TT----AGCT----A-GTCG--T--GAC-AC--CTATAAG----GGTAGAGAA-------TGAGGA----AACA----C-CC--CAC-----AGGGTT--TA------------------------CCCC--CT---A------------CCTT-CCTCT----TGT------GA-C-C-A-A-------A-C--C-TTTAAg
gi|11 : aagaaatagaaaaaaataagtatagctacatgtacaggtG-GCG-T-TGCTAAAACGTG-GAACGTAAAACGGAA-CTGG----AC----G------GAAT-ATA-ACATT-----G-A-TTATA------T--------TGTAGCTcatatatatgtacatgcttttacacatttataaagcagtgtatgagtgcctttacaatagggagtgtggtacatgtatgtataaagaacgata
gi|11 : aaatgg-------T-C-----GG-AA-T--T---CA-----AAAA-A-G------------------------T---------------T--TT----AGCA----A-ACAG--C--GAA-ACCTTTGC--GATTGGGTAGAGAG-------T--GGA----AAGA----A-TA--CAC-----ATGGTT--TA------------------------CCCC--CT---C------------CCCC-C---------TTC---TCGT-G-CAA-A-------A-CGTC-TTT--ATC-----GCA------------CATGaatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataatttcggaattcaaaaaagttttagcaaacagcgaaacctttgcgattgggtagagagtggaaagaatacacatggtttaccccctccccccttctcgtgcaaaacgtctttatcgcacatgtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|12 : aaatggggcgttgctaaaacgtggaacgtaaaacggaactggacggaatataacattgattatattgtagctaatataacccaagtcaaatgtttattaaaaaaagtttactgagcgttttacaataattAACGGGA-C--GG---AC----AAT----GAA--ATA-A-A-A-----C-A-CTA-A--------------ATTTAGAATGAA-AAT-AACACCAAGAA-TTGGG----------------GGTAT--ATGCTT-TATTTCAA-TCAAAAT-TAA-CA-T-TTAA-A-GA-----CTTTATTT-ACAAGTGCT-A----AAAC----AATATA--TATATAATTATATTG--------------AA-TA----------------T-------------T---------------GATAATATGAATATTTG-TATAACTATTTAAG---CGT-TTAT--A---------C-----AGCGG-T--T---TAC-TAGAATA-A-A------------------------T---------------TG-AC----AGCG----A-GCTG--C--GATAAC--TT-T--G----GGTAGAGAA-------T--GGA----AATAATGTA-CATGTAC-----ATGATT--TATA-------A----CCG----CCTCATC--CT---A------------CCCC-ACTCC----TT------GTG-G-C-A-A-------A--ACC-TTTCAATtatttactaacaatatagtgcttgcacttaacaacagggaatatgttatgagtaaaacaacgataattcatgatcttataaagtgaacaagttaaattccttgtgtttgattt
gi|13 : ggG-GTG-T-TACTAAAACGCG-GAGCAGAAA-----------------------TT-----AT-----A-A-T-----G-A-TTA-A------TG---------TAGT---AA-AGGTAACACCAAAAA-TCTGG----------AAA-------C--ATGTTT-TACTTTAA-TC-------AA-AATT-TT-A-G-GAC----ATT--TTT-AAAAGCGGC-A----AAAC----AA-CT---TAGAG-------CTA--------------AA-T-----------------T-------------T---------------acatgtatgtagactatttacacgtaatacagga
gi|13 : tggaattcagaaatatatacg-C-----AG-AAGTG-T---TACATA-------------------------------------------------TG-T-----AGCG----A-GCAG--C--GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----AGGCCT--TATA-------T----CCC----CCgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgacagaagtgttacatatgtagcgagcagcgacacctgtgggttaagaatggaaagaacacacaggccttatatcccccttatttgtggcaaaacgt
gi|14 : tggaattcagaaatatatacgggtgttactaaaacgcggagcagaaattataatgattaatgtagtaaaggtaacaccaaaaatctggaaacatgttttactttaatcaaaattttaggacatttttaaaagcggcaaaacaacttagagctaaatttgtacaccatgaattgattagggtaagttatatttgtataaaattacttaatgtgcaaagcgacttaacaagaatctgaaaattctcggcaatgaAGA-A-A------------------------T---------------TG-TTTTAAAG-G----A-CCAG--CCGAAC-AC--T-GC--G----GGCAAAGTA-------T--------------------A--CAT-----AAGGTT--TGTA-------A----CACAACACCCACCC--CT---C------------TC-------------TTC---CGGA-G-C-A-A-------AGCGTCTTTTAAATCGAGGAATAAATTAATATTACCATGACA--GC-ATGGGG-G--CGT-AGttatttgtggcaaaacgt
gi|18 : tcttttaaaatcaatgagccataattcatttccaaaatatttgaattctacattcatgatattaaaagattaaatcggaatctagtataagaactttaacatgaagaatcttgaaaaattcggcattattggG--------------AA-T-----------------T-------------T---------------AG-AA---A-------G-CGTA-----T-------TGC-TTTT--AAGAAATGT-C-----GG-TA-T--C---GACATA---TG-A-C------------------------T---------------TA-T-------CG----A-GAAG--C--GAC-AA--TCGT--G----AGCAGAGGA-------C--GTA----AAGC----A-CA--CACAGTTAAGGGTT--TATA-------T----CTC----CCTCTCgttccgttggagggcaaggggtaatccccagtttttgaaaagtaagttatgtga
gi|19 : aatcggggaaaatatgctgtactagtttaaggaatttgataacaggtgtttaacaagttagattaagagactgtaaaataaatttattttgataagctattctaattattatgagaC--CT---C------------TCCT-CCATT----TTTTATACGGATGTC-A-A-------A-CTTC-CT-AAATCAA--AACA------------CATGCCACTGCAAT--GG-ATCCGTCAGTAGCTCGGGGTGGGGGGTAAAGTTAGTGATTCTAATTTTCCAA-CATATACG-TTAATAAATCTACGACCCTTCTGTAACTGGATTTTAC-ATAAATACTACTGACC-CACTCAGACAGA----GGGGGGGTGGGGCT------TAAATTTTTCACGCCTATgtggcaaaacgtct
gi|2 : TACGAAAGCCAGAAGGCTCATTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-TATCCAAATCAGCCA-TCAAAAACAAGAATCC--ATACTTCAAATT-CTCCT--TTGTAGTTA-TAGACCCAAGC-GCTTG-TGAATT-GCGG-ATGAAAATAC-TAT-AGTTTGTAGGGGGAAATGAT--ATAT-ACTGGAAAGTGTAAAGTTGTCAGAAAAAA---GT-GGA-AA-GGGCAG-TTTCTTGGTTCCACGTCTATATGGGCATCATTAGTGTTACTGAGGAAGT-CGATTCCCGTTGTATTTTAT-GGATTAC---TTCC-----CCTTAAGAAATTTTTTGATTATATAAA-TA---AATACATTTATCTTTCTCGTAAG-AT-TATTT-CTG-----TAAATTTGCCAAGCAAGAATTTA--TAAATACATA--TTTATATGCAA--TCTAGGGTAAACATTGAAAGCATAGGACACTGTAG-TATTTATA-ATGACTA--T-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTTGAAGTTTTatgacataaatgttgct
gi|2 : gAA-TTGGG----------A-ATTGGGGGT---------CATTTAAAATCGAAAT-AAAGAA-A-TT-A-G-GA-----ATTTGTTTTAAAAGCGTT-G----AAAT----TATCT---GATAT-------TTG--------------AA-T-----------------TCTACAGCATGAATT---------------AA-AA---G-------G-TAAA-----TCAAA---TGC-TTGT--A-------T-A-----AG-AG-T--T---TACATG-AAGA-A-TCTTGAACATCGGCCTTGGGTAAAAT---------------TG-TT----AA-G----A-GCAG--C--GAC-AC--TTG---A----GGC------------------A----AAGA----A-CT--CAC-----A-AGTT--TGTA-------A----CAC----A-------------A------------CACC-CCCTC----TTTT---CGGA---C-ACA-------A-TGTC-TTTAAATCAA--CACAC-----------CATGACA--GC-TT--GG-G--CGT-tgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattgggaattgggggtcatttaaaatcgaaataaagaaattaggaatttgttttaaaagcgttgaaattatctgatatttgaattctacagcatgaattaaaaggtaaatcaaatgcttgtataagagtttacatgaagaatcttgaacatcggccttgggtaaaattgttaagagcagcgacacttgaggcaaagaactcacaagtttgtaacacaacaccccctcttttcggacacaatgtctttaaatcaacacaccatgacagcttgggcgt
gi|20 : gtacgaaagccagaaggctcattcgcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatccaaatcagccatcaaaaacaagaatccatacttcaaattctcctttgtagttatagacccaagcgcttgtgaattgcggatgaaaatactatagtttgtagggggaaatgatatatactggaaagtgtaaagttgtcagaaaaaagtggaaagggcagtttcttggttccacgtctatatgggcatcattagtgttactgaggaagtcgattcccgttgtattttatggattacttccccttaagaaattttttgattatataaataaatacatttatctttctcgtaagattatttctgtaaatttgccaagcaagaatttataaatacatatttatatgcaatctagggtaaacattgaaagcataggacactgtagtatttataatgactataaatgtgtcacaacttttttatttttatatttgaagtttttgttgatttgggaaatatactttcgaccttaacatctttgaaataaatagattggcttcaataacgtcgcactgcataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACGAGTG-T-TGCT--AACGCG-GAACGAAAAACGGAA-CGGG----ACGGAAAACG---GAAC-G-A-A-A-TTTAAGA-A-TTA-AAATTATTG------ATGT--TGCTAA-GAT-AACACC-AAAC-TC--------------GA--GGAAAT--GTGCTT-TATTTTCA-TATAGAT-AAA-AG-T-TT-T-T-GATGTATATGTATTT-ACA--C-AT-A----ACAC----AGTATGTGTATAC-------TT
gi|22 : atgatatgtacagcCAAAAT-AAA-AA-T-TT-T-G-GT------TTTAATT-ACAAGCGGT-G----AAAC----AATTC---TATGA-------TTA--------------AA-TGCTACAGCATGATTTAAT-------------T---------------AA-AA---G-------G-TAAG-----TGAAA---TGT-TTGTAGA-------C-CTGTATAG-AG-T--T---TACAacaacagggagtgtggta
gi|24 : G-AAACGGAAAATGGAA----A----AC----AATT---TAA--G-A-A-A-T-----G-AATTA-AAATTGTTA------ATATAGAT--AA-GAT-AACACCAACAA-TAGGA----------AAA--A----T--ATGTTT-TATATCAA-TATAAAT--AA-AA-T-GA-AAG-GA-----ATTTGTTT-ATAAGCAGT-gagcaatttacaagaatcttgaaatttcagtattgataaaatgtttaaaagcagcaatacctgtgagtaaaaa
gi|25 : ggtgctgctaaacgtgaagaaaaccgaaaCG-GAAAGGAAAACGGGA-A--A----A-----AATCA--GAAT-TTAGA-A-T-----G-A-TCA-A------TGCGACTAAACCAGT------AA--AA----AAAAA-TCGGA----------AAA--A----T---TGCTTTCATTCCA--TCAAAAT-CAA-AAGT-TT-T-G-GA-----GATTATTT-GCAAGCGAT-A----AAAC----AATTT---TATA--------TTG--------------AA-T-----------------
gi|26 : ggaaGAAAATGGAA-C--G----A-----AATC---TAATTGTA-A-A-T-----G-A-TTA-A------TG---------TAATTT--------------AAAAA-TCGGG----------AGG--GGGGGGG-ATACTG-CATTTTAA-TCGAAAT-AAG-AA-T-TT-A-G-GA-----AATTGTTT-GCAAGCATT-A----AAAC----AATCT---TATAaatatt
gi|27 : aAAG-CGATTCC-GTTGTATTTTATTGAATTACCCCT-CC-----CCCTAAATAATTTTCTAATGATATAAAAT----AATACATTTGTCTTTCT-
gi|28 : ggcacaatatagtgac--T---TACATA-------------------------------------------------TG-T-----AGCG------GCAG--CC-GAC-AC--CTGT--G----GGTTAAGAA-------T--GGA----AAGA----A-CA--CAC-----A-GGCC--TATA-------T----CCC----CCtttgtacgt
gi|29 : aatgacgaagtg--GAC-AC--TTAT--G----GGTAGAGAA-------T--GGA----AGGA----A-CG--CAC-----CGGGTTAATGTATATATATG----TGC----CCCTCCC--CG---C------------CCCC-ttatttgtggcaaaacg
gi|3 : gaaagGA----A-CA--CAC-----AGGGTT--TGTAC------A----CCC----CCCCCCC--C--------------------C-CCTTG----TTTT---TGGA-A-C-A-A-------AACGTC-TTTAAATCAA--CACA------------CATGCCA--GT-GT--GGTA--TGT-Aattttcatgttgacaaaacgac
gi|30 : TG-T-TGGTAAAACACG-GAACGGAAAGCGGAA-T--GGAACGC----AATTTAAGAAT-TAA-A-A-T-----A-A-TTA-A------TG------tataagtcaacaagttttaacatcatcttttttaactaacaaggtcttcgtgtccgcagcactgcaatcctgaatagtaggctagatatttctaatctaaatacatgtacgtgtatcttatcactagattaataatggaaagaccttgtaattccactaaaacataaattctctgttaatattctaactatttcatacatcatgaaatagatttaataattcctttcaaaaggatcataaattccattttctttctttggaggggtggggtggggggctattgttactcttttatttccttttgttattgaattttttttttttcaccctctgtatcttgtaggggtcaaccagttcatgtacgtacattcacttttcataaatcgatctcaaatggggcaaacctttcacataccggattcgctcgctttagaattcaatatgatagataataattattatatcaagtgcagaactaaaatcaaattccatttaatatcgtcttaaaatatcccattcgattaaaagcaaattcgattaaagaaggctatgttagatggaaatcgttcaaaaattatcattctatctttttcaatatatatagatagactatcataa
gi|4 : caagacaagtagatGACAT-GTAGCTATTTATA-ATTACTT--TTAAATGTGACTAACAACTTTTTTTATTATTTATATTGAAAGTTTTtagctaagatgctacc
gi|4 : CTGTCACATG-TTTCACATGT--TCATTAAATTGACTGAGTCGGAAAGA--CTG-ATGTGTTCCTCTTTAAAT---CTAATAATGCAAAAACG-GTG-TATGTTTAAACGCT-GAACAGAATATGAAAAC--G----AC----AATC---GAA--GTA-A-A-T-----GTA-T------------------ATGTAGTTTTAA-CA--AATACTAAAAC-TCGGG----------AGA--GGGGGT----GCTT-CATTTTA--TCGAAAT-CAACAA-T-TT-A-G-GA-----ATTTGTTT-AAAAGCATT-G----AAAA----AATCT---TATAT-------TTG--------------AA-T-----------------T-------------TCTTACAGCATAAATTAA-AA---C-------G-TATA-----TCAAA---TGC-TTGTT-A-------T-C-----AG-AA-TATT---TACATA-AAGA-ATC------------------------T---------------TG-TTT---AACGC---A-GCAG--C--GACCAC--TTAC--G----GGCA-AGAA-------C--ACACCCCAGGA----AACA--CAT-----AG---T--TGTA-------T----CCC----CCC---------------------------C-CCCCC----TTTC---CGGA-C-C-A-A-------A-CGTC-TTTAAATCAA--AACA------------CATGACA--GC-AT--GG-A--CGT-AG-AG-TC-GGGT-GGGG---AAGTTACTGAT--ATATTT----A-C-TATA-G-TATATAATTGTAC--------------------TTACAATAAATA----TGACCACA---AGAAAGGGGGGAGGGGGGtcttggtcaggaaatatatatcttcaataacaatcctcattaaaactgtcacatgtttcacatgttcattaaattgactgagtcggaaagactgatgtgttcctctttaaatctaataatgcaaaaacggtgtatgtttaaacgctgaacagaatatgaaaacgacaatcgaagtaaatgtatatgtagttttaacaaatactaaaactcgggagagggggtgcttcattttatcgaaatcaacaatttaggaatttgtttaaaagcattgaaaaaatcttatatttgaatttcttacagcataaattaaaacgtatatcaaatgcttgttatcagaatatttacataaagaatcttgtttaacgcagcagcgaccacttacgggcaagaacacaccccaggaaacacatagttgtatcccccccccccctttccggaccaaacgtctttaaatcaaaacacatgacagcatggacgtagagtcgggtggggaagttactgatatatttactatagtatataattgtacttacaataaatatgaccacaagaaaggggggaggggggtg
gi|5 : gacatgtagctatttataattacttttaaatgtgactaacaactttttttattatttatattgaaagtttttcttggtcaggaaatatatatcttcaataacaatcctcattaaaaAACTCTCTT-ATC-T----------AGTCTTATAATGACGCAATTACTTGAAATCATA----------G--TT--CTGAGTCG-AAAGATTCTG-ATGTGTTCCTCTTT---TAAATTAATAATGGCAAAACG-GTGAT-TGTTTAA-CGCCTGAACAGAATATGAAA-C--G----AC----AATC---GAA--GTA-A-A-T-----GTA-TTA-----------------TGTAGTTTTAACAA--AATACTAAAAC-TCGGG----------AGA--GGGGGC---TGCTT-CATTTT-A-TCGAAATCCAC-AA-T-TT-A-GCGC-----ATTCGTT----AAA-GAT-T----GAAC----AATCT---TAT-T-------TTGCTTCTATAGACATAAA-T-----------------TA------------C---------------AA-AA---G-------GCTATA-----TCACA---TGC-TTGT--A-------T-C-----AG----T--TTAGTACATA-AAGATACC------------------------T---------------TGTTT----AACG----AGGCAGCAC--GAC-AC--TTAC--G----GGCAACGAAACACACCC--CGC----AGGA----A-CA--CAC-----AGGTGT--TGTA---------------------------------T------------CCCC-CCCCC----TTTC---CGGA---C-A-A-------A-CGTC--TTAAATC----AACA------------CATGACA--GC-A---GG-A--CGT-AGTAG-TCGGGG-GGGGG---AAGTTACTGA---TAATTT----G-CTTATA-G-TATAT-AAT-TA-G-------------------TTACA--CAATA----TGACCACA---AGAAA----GGGGGGGAGGGGGGTG------TAAATC-----CGCCTATtg
gi|6 : a-GTAG--C--GA--AC--CTAT--G----AGTAGTGAA-------T--AGA----AAGA----A-CA--CAC-----ATGATT--TATA-------T----GCC----CCGCTCC--CT---C------------aaactaacatgtgcttgaggccgggcggatgaagaaaactgtgaattaatgggctgtgtttgcctatttccaggttcacaag
gi|7 : ACA-AAGA--------------------------------------------TG-TT----GGTG----A-ACAG--C--GAC-AC--CTAT--G----AGTAGAGAA-------T--GGA----AAAA----A-TA--CAT-----ATGGTC--TATA-------------TC----TGTACAT--GT---A------------CCCC-CTCCC----TTTCT--CGTG-G-C-A-AGACAACCA-TGTA-TTTAAA-CAT--AATA------------CAttattgcaaagcgtctttaatgcacatgcatttacttatagatagtatgtagtgtttgcacttacaacaggttaaaacaacgataatcatgatctcattaagttaaacatatcgtatttgatattttgaattaatggatactgattgatcacaatacttcaatcttaaataggcgaaaacttctggcatctaaatatttgtgcatgaatcttacacgtgtacatgtattatttagattaagaatgagatgatattttaattctactcaaaaacaaattctcaattagccttttacctctttcatatatttttttaaataaatctgccaattactatagtcataaacttcacctccgttttcatttactctgtttcaatcttttctgctgtatctcttggggttcaacactaatccgcaaccaaggataacggtgcatgtacgaacgttcactttacataaattgatccaaaaaagaggcaaaccttttataatttttggacacgtttgcctcaa
gi|8 : agttttacagtaagctattgTCCAAATCAGCCAATCAAAATCAAGAAATCCAATACT-CAAATTAC--CTATTAGTAGTTAATAGACCCAAGCAGCATGATGA-TTTGCGGTATGAAAATACATATTAGTT-GTAGGGGGAAATGATTAATATTACTG-AAAGTGT-CAGTTGT-AGAAAAAAAAGGTAGGAGAAAGGGCAGGTTTCTTGGTTCCACGTGTA-ATGG-CA-CATTAGGGTTA-TGAGGAAAGTCGATTCC-GTTGTATTT-AT-GAATTAT---T-CCTTCCACCTTAAGA--TTTTTAGATTA-ATAAAATATAAAATACATTTATCTTTCT-GTAGATAAATATTTTCTG-----TAAATTTGCCAAGCAAGAATTTAC-TAAA-ATACAACTTTA-ATGCAAGCCCTAGGGTAAACATTGAAAGCATAGGACACCGTAGATATTTATAGATGACCTATT-AAATGTG--TCACAACTTTTTT-ATT-TTTATATTGAAAGTTTTgagtacaacaggttgtgtggtatgtataaaacaacggtgattcatgattttattttaaaagccaacaagacaaacatcttgtgtgtttttttatttattataattgtgtgtagtttatcttatattactaatgaagactgggtgtccgcagcactcaatcctacatgtactgtaagtaggttaaagcatttggtagtttaactctaatctaaatacttttcgagtctttttagtaataattggattaaatataggtataaatttcatcttagttttcattggttctgtttcagttgttttcccccgctgtatatctctttggtttcaacattaatcagcaggataccagtacatttacgaacctcccctttccataaattgatcctaaacgatgtaagcctt
gi|9 : aatcccagattcaagatatcaatAA---TGTATTTT--A-------TTC-----AG-AA-T--T---TAGA------A-A-T------------------------T---------------TG-TTTACAAACGTGAGA-GCAG--C--GAC-AC--TTGC--A----GGCAGGGAA-------------------------A-CA--CA------AGGGTT--TGTA-------A----CCC----CCCCCCCTCCT---CGCCCATTCACCACCCCACCCTCACCGTTTC---CGGA-G-C-A-A-------A-CGTC-TTTAAATCAA--CACA------------AATGACA--Gtgttgatttggaaataatgtttcattttaacacctttgaaat
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTTTTCTTCGCTGTACCTCTTCGGGTTCAACACTAATCCGCAGGATACCGTTTCATACGAACTTTAACTTCACATAAATTGATTCCAAATGAGGCAAACCTCTTATACACATCGGATTCGTTTGCTTTTTCAAAAATATCTGTGCTGTATAATTATATATTGAACCAAATTGAAATTCAAGTTCAATTATCTTGAAAATATCCAGTTCGATTAAAAGCCAATTTGATTTTTTTAAAAGCTATGTTAGGGGGACATTGTTGGAAAAATTATTTTGTCTTTTCGATGTACGTTGCTTC
Unaligned ( gi|16 ): GTTCAACACAGGTGCACAGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACCTTTCAGACACTTTGCGCGTATTCGCTTTAAAATTTGATGTGGTACATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGATAATAAGCGAATTTCATTAAGATAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|17 ): TCAACACGGTGCAACGGATAACGATACATGTAAAGACACTAAATTCATATCAATTGATCCCAAATGAGATAAACTTTCAGACACTTTGGCGCGTATTCGCTTTAAAATTTGATGTGTACAATAAATGTATATTATTTCAGCTGTAAAAGTAATTCAAATTCAGTTAACTGAAAAAACATTAAGTTTGGATAATAAGCGAATTTATTAAAGTTAGGTTATGTTTGGGAAACAGTTTTACCTTTTTCTATGTTGTT
Unaligned ( gi|21 ): TGACCGCAGCACTCATATTCCAAATAGACTAGGACTTCTGGCAGTTTATTTTTAATTCAAATACTTGTATCTTACATGTATCATTCAGATGAATGAGATGACCTTTAAATTCCATTCAAATATACATGTAAATTCTCTGTCAGTCTTTTAGATATTTCATATTATATTTGTTAATTTCGTTTAATAGAAATATAAATTTCACCTTC
Unaligned ( gi|23 ): GCTGTGTCTCTTCAGGTCCAACACTAATCCGCAGTTTAAGATACAGGTGCATGTATACCAACTTTCACAACACATAAATTTATCTCAAATAAACAAACATTTAAAACATTTTTGACCCGTGTGTTTTAAAATTTATGCGACACATAAATGTATATGTTCCAGACGTTTAACTGAATTCAGATTCAACTT
Unaligned ( gi|31 ): GAAACAGGTAAAATTTGTCGATTGAGAACAGGCTTTGAGATGAAGAAATGTGAATTATGGGCTGTTTGCTATTTTCACAA
Unaligned ( gi|32 ): CCTACGCCTTGTGGGGGAAATATTTCAGTACATGTATGTAGATTATTCA