lowQualScore : 111 1 222 1 1111111 11 11111 111 1111111 1 111 444444444444444444 1
lowQualScore : 7 6 2 5 1 111 8 2 2 33 6666666 1 222 4444 1 111 3 2 0 22 7 0 777 22 1 333 1 4 99 2 33 33 5555 2 2 444 5 2 2 0 1111111 44 2 2 00000 444 2 2 1111111 1 2 3 33 66 111 7 2 33 2 2 2 66 666 2 1 1 1 22 999999999999999999 33 5555555 66666666 33 222 3333 22 5 1
lowQualScore : . . . . . ... . . . .. ....... . ... .... . ... . . . .. . . ... .. . ... . . .. . .. .. .... . . ... . . . . ....... .. . . ..... ... . . ....... . . . .. .. ... . . .. . . . .. ... . . . . .. .................. .. ....... ........ .. ... .... .. . .
lowQualScore : 3 0 8 0 8 000 6 9 4 22 2222222 6 888 8888 6 222 2 3 8 00 0 3 333 55 9 222 8 0 99 5 44 44 3333 5 7 777 3 7 9 6 2222222 33 5 5 55555 111 6 9 5555555 4 7 5 77 77 444 1 5 44 5 5 2 22 333 7 9 7 7 44 000000000000000000 66 9999999 66666666 22 777 9999 00 7 4
consensus : GATCCACTCCGATATTCTGATG-TCGCTAA--TACAAAG-A-TC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACGTCAG--CATGCACTTT-G-G--TG-ACC-TA-AGGTCATCCAA-TCAAATGCTTC-TACA-AG--A--A----CCAA-T-CAAACC---T-A-TTCTTACATG------TTGAATTCAGCA-TT-T-A-C--GGTTCCTTCGGAA-GTCGTTATC-----CGGAACAC-TTCGG--GA-TT--CACTG-TCA--CT-TATTCCT-ACCGCCAACGATTTTGCCAG-CG-ACG-A-TTTG-AT--TGG------T-T---------TCTCT-------A--------AAGT-GCAT--GCTG----AC-GTGACCCTATACGG
Reference ( gi|5 ) : GATCCACTCCAGTATTTTGATG-TCACTAG--TACATAG-A-TC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACGTCAG--CACGCACTTT-G-G--TG-ACC-TA-AGGTCATCCAA-TCAAATGCTTT-TACA-AG--A--A----CCAA-T-CAAACC---T-A-TTCTTGCATG------TTGAATTCAGCA-AT-T-A-T--GGTTCCTTCGGAA-ATTATCATT-----TGGAACAC-TTCTG--GA-CT--GACCG-TCA--CT-TATTCCT-ACTGCCAATGATTTTGCCAG-TG-ACG-A-TTTG-AT--TGG------T-T---------TCTCT-------A--------AAGT-GCAT--GCTG----AC-GCGACCCTATTCGG
gi|1 : GATTCACTCTGATATTCTGATG-TCTCTGGAATACAAAG-A-TC--TGAAA-------AC-AT---CC---TGTAT-AA--G-G-TCACACCAG--CATGCACTTT-G-G--TG-ACC-TA-AGGTCATCCAA-TCAAATGCTTC-AACA-TG--A--A----CCAA-T-CAAACC---C-A-CTCTTACATGTACATGTTGAATTCAGCA-TT-T-A-A--AGTTCCTTCATTA-GTCATTATT-----CAGAACAC-TTCAG--GA-TT--CACTG-TTG--CA-TATTCCT-ACCACCAACAATTTAGACAG-CA-ACA-A-TTTG-AT--TGG------T-T---------TCTCT-------A--------AAGT-TCAT--CATG----AT-GTGACCCTATGCGG
gi|10 : ctatcatcttatttGATCCACTCCGATATTTTGTTG-TCGCT-------------------------------------------CGTAT-AT--G-G-TCACATCAG--CATGCATTTT-A-G--TG-ACG-TA-AGGTTATCCAA-TCAAATACTTC-TACA-AG--A--A----CCAA-T-CAAACC---T-A-TCCTTACTTG------TTGAATGCAGCA-AG-A-A-C--GATTCTTTCGGAA----GTCATC-----CGGAACAT-TTCGG--GA-TT--GACTG-TCA--CT-CATTCCT-ACCGCCAACCATTTTGCTAG-CG-AAA-A---------------------------------TCT-------G--------AAGT-GCAT--GCTG----GC-GTGATTTTATACGGaatgtctgcagatctt
gi|12 : ttGATCC-CTGCAATATTATGATG-TTGCTAA--CACAAAGCA-TTCTTGAAGCAATCCAAC-AT---CC---CAT------------CATATCAG--CATGCACTTT-G-G--TG-A-C-TA-AGGTCATCCAACTCAAATGCTTG-TATA-AG--A--A----CCAA-T-CAAACC---T-ACTCCTTGAATGA-----TTGAATTCAGCA-AT-T-gat
gi|9 : ctacatcttCTCTGATATTCTGATG-TTGCCGA--TACAAAG-A-TT--TGAAG-------AC-AT---TT---TGTGT-AG--G-G-TCGCATCAG--CATGCACTTT----------------AGATAAACCAA-TCAAActatatagttgttatgtagagaatcattaatccaga
gi|4 : agatgtcctgtataggatcatgttagcatgcactttggtgaccactcaaacctattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaatCAATATTTTGATA-TCACGAA--TACA-AC-ACTC--TGAAG-------AT-AT---CC---TGTAT-A---G-GATCACGTCAG--CATAAACTTT-G-G--TG-ACC-TA-ATGTCATCCAA-TCAAACGCTCC-TACA-AG--A--A----CCAG-T-CAAACT---T-A-TTCTTCCGTG------ATGGATTCAGCA-CT-TAA-C--AGTTCTTGTGGAA-GTCATTATC-----CAGACCAC-TTTGG--GA-TT--TACTG-TCA--CT-TATTCCT-ACTACCAACGATTTTGCCAC-AG-ACG-A-TTTA-AT--TGG------T-T---------TATCT-------A--------AAATAGCAT--GCTG----GC-GTGGCCCAATcagggcaaata
gi|6 : TATTCTGGTGGTCACTAT--TACAAAA-A-TC--TGAAT-------A--AC---CG---TGTAT-ATAGG-G-TCTCATCAG--acaagatgccttc
gi|20 : gcatccatttgtaaggtcacatcagcatgcgcttttgttaccatagaaaccgtcatccaatgcttctcccagtaaaccagttcaaaattattcttatatgatgaataagctttactgttccttcggaattcgttatccggaacacggaattcaactgtcacccttttccttaccagcaacaattttgccagccaacgagttgtcaaattTG-TCACTAA--TACCGAG-A-TC--TGAAG-------AC-CT---CC---TGTAA-AG--G-G-TCACTTCAGAACAAGCATTgccaaatgcatcaaa
gi|21 : G-TCGCTAA--TACATAG-A-TC--CGAAG-------AC-AT---CC---GGTAT-A---GAG-TTACATTAA--CATGcaagatctacggcaacatctagaaaaatcgtagatcatact
gi|7 : gatctttgatcctctattataTAT--TACAAAG-A-TC--TGTAG-------AC-AG---CC---CAAAA-AG--G-G-TCATATTAC--AATGAACT---------------TA-AGATAAACCAA-TCAAAT
gi|8 : catcctgtatagggtcaggtcagcatttgatgacctcaagtcctccgatcaaatgcttctataagaaccaatcaaacctattacatgataaattaagcatgtacgataacgtcagtgattacccggaacacttcgggactgactgtcacatattccgaccgccagtgattttgctagtgatgG--TACA--G-A-TG--TCAAG-------ACTAT---CA---GCTAT-A---G-GGTCACATTAG--AATTCACTTT-T-G--TG-ACT----AGGTCATCCAAGTCAAATGCGCTGTGCACAG--A--AGCTACCAA-T-CAAACC---TAA-TCCTTAC-TG-------TGAATTT-GTA-TC-T-G-TTGAGTTCTGTTGGAGTGTCATTATT-----TGAAATAC-TTCGGCAGATCT--CACTG-T-A--TT-TAATTTT-ACCACCAAAAGTTTTACC------ACA-A-CATG-AT--TGG------TAT---------TATCT-------A--------AAGT-TCATTCGATG----TCAGTGACCCTtcagagcagattgaagatctggttttaa
gi|1 : AG-A-TC--TGCAG-------AC-AT---TC---CGCAT-AG--G-G-TCACATCAT--GATGAACTTT-A-G--AG-A----A-A------CCAA-TCAAATtatacataattcttcaat
gi|2 : ctatcatcttatttgattcactctgatattctgatgtctctggaatacaaagatctgaaaacatcctgtataaggtcacaccagcatgcactttggtgacctaaggtcatccaatcaaatgcttcaacatgaaccaatcaaacccactcttacatgtacatgttgaattcagcatttaaagttccttcattagtcattattcagaacacttcaggattcactgttgcatattcctaccaccaacaatttagacagcaacaAG-A-TA--TGAAG-------AC-AT---TC---TGTAT-A---GAG-TCACGTCAC--CATGCACTTT-t
gi|3 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtG-A-TT--TGAAG-------AC-TT---CA---TGTAT-A---G-G-----GT-----CACGTACATC-G-GAATGAACT-TT-AGATAAACCAA-TCAAATta
gi|16 : catccactatagggtcacattagaattcacttttgtgacctaaggtcatccaatcaaatgcgtgcacaagcctaccaatcaaacctatccttacatgttgaattttgtatctgttggttctttggaggtcattatttgaaatacttccggattcactgtcagttaattttaccaccaaaagttttaccaaca-A-TC--TGAAG-------AC-AT---TC---TGTAT-ATAGG-G-TCACATCAG--AATGAACTTT-A-G--atcaggatacccaagcacaacaaaagtctggttttga
gi|11 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctctctctgtcagtatattcctaccacaaacaattttgcctgtgatgt-TC--TAAAG-------AC-AT---CC---CGTGT-AG--G-G-TCACATCAG--AATGAACTTT----------------AGATAAACCAA-TCAAATtcagaatagtat
gi|2 : agacatcccgtatagggtcacgtcagcatacactttggtgacctaaggtcatccaatcaaatgcttctacaagaaccaatcaaacctacaagtttaagtcagcatttacagttccttcggatgtcattaaccatgacacttcgggatttacgttcactttttcttactgtcatcgattttgccagcgacg-TC--TGAAG-------AC-AT---TT---CATGT-AT--G-G-TCACATCAG--CATGCACTTC-G-A--TG-ACT-TA-AGATCATCCAA-TCAAATGCTGC-TACG-AG--A--A----CCAA-
gi|19 : -TC--TGAAG-------AT-ATTATCT---TGTAA-A---G-GGTCAGGTAAT--CATTCATTTTTG-G--TG-ACC-TA-AGGTCATCCAG-TCAAATGCTTC-TACC-AG--A--A----TCAA-T-CAAACCTCTT-A-CTCTTG-GTG------TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtaaagtgcatggtgacgtgactctatacagaatgtcttcatatctta
gi|15 : GATG-------AC-AT---CC---TGTAT-ACAGG-G-TCACATCAG--AGTGAACTTTAG-A--TA-AAC-TA-A
gi|11 : caaggtcatccaatcaaatgcgtctacaagaaccagttattcttgtatgttgaattcagcattttacggacccttcgaaagttacttcaggattcactgtcacttatttttaccgccaacaattttgaAG-------AC-AT---CC---CGTAT-A---G-GGTCACGTCAG--CATACACTTT-G-G--TG-ACC-TA-AGGTCATCCAA-TCAAATGCTTC-TACA-AG--A--A----CCAA-T-CAAACC---T-A-------CAAG------TTTAAGTCAGCA-TT-T-A-C--AGTTCCTTCGGA----TGTCATTAACCATG--ACAC-TTCGG--GA-TT--TACGT-TCA--CT-TTTTCTT-ACTGTCATCGATTTTGCCAG-CG-ACG-A-TTTG-AT--TGG------T-T---------TATCT-------A--------AAGT-TCAT--TCTG----AT-GTGACCCTACACGG
gi|9 : AG-------AT-GT---CC---TGTAT-A---G-GATCATGTTAG--CATGCACTTT-G-G--TG-A-------------CCAC-TCAAAC-CTAT-TACA-------------------------------------TGC-TG------T---ATTCAGCA-TT-T-A-T--GGTTCCATCAGAA-GTCATTATC-----CGAAACACTTTCAG--GA-CT--GACTC-TCT--AT-TGTTCCT-AATGCCAACGATTTTGCCAT-TG-ACA-ATTTTG-AT--TGG------T-T---------TATCT-------A--------AAGT-GCAT--GCTG----AT-GCGACCCTAgatgtctttaga
gi|14 : AG-------AC-AT---CT---TGTGT-A---G-GGTTACATCAG--CATGCACTTT-G-G--TG-ACC-TT-AGGTCATCCAA-TCAAAAGCTTC-TACA-AG--A--A----CCAA-T-CAAATC---T-A-TTTTTACATG------TTGAATTAAGCA-ATAG-A-T--AGTT-CTTCAG-A-GTCATTACT-----CAGAACTC-TCTGG--GA-TT--CACAT-T----CC-TATTCCTAACCACCAACAATTTcacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|7 : C-AT---CC---TGTAT-A---G-GGTCAGGTCAG--CA-----TTT-G-A--TG-ACC-TC-AAGTCCTCCGA-TCAAATGCTTC-TATA-AG--A--A----CCAA-T-CAAACC---T-A-TT---ACATG------ATAAATTAAGCA-TG-T-A-C--GATAACGTCAGTG-ATTACC--------CGGAACAC-TTCGG--GA-CT--GACTG-TCA--CA-TATTCCG-ACCGCCAGTGATTTTGCTAG-TG-ATG-A-TTTG-AT--TGG------T-T---------TATCT-------T--------AAGT-TCAT--TGTA----AT-ATGACCCTTTTTGG
gi|3 : C-AT---CC---ACTAT-A---G-GGTCACATTAG--AATTCACTTT-T-G--TG-ACC-TA-AGGTCATCCAA-TCAAATGCGTG-CACA-AG--CCTA----CCAA-T-CAAACC---T-A-TCCTTACATG------TTGAATTTTGTA-TC-T-GTT--GGTT-CTTTGGAG-GTCATTATT-----TGAAATAC-TTCCG--GA-TT--CACTG-TCA--GT-TAATTTT-ACCACCAAAAGTTTTACCA-----ACA-A-TTTG-AT--TGG------T-T---------TATCT-------A--------AAGT-TCAT--TCCGATGTAC-GTGACCCTATgctgtctacagatctttgtaatatcagagcagattgaagatctggttttaa
gi|6 : C-AT---CCATTTGTA--A---G-G-TCACATCAG--CATGCGCTTT-T-G--TT-ACCATAGAAACCGTC--A-TCCAATGCTTC-TCCC-AGTAA--A----CCAGTT-CAAAAT---T-A-TTCTTATATG------ATGAA-TAAGC--TT-T-A-C--TGTTCCTTCGGAA-TTCGTTATC-----CGGAACAC-----G--GA-ATTCAACTG-TCACCCT-TTTCCTT-ACCAGCAACAATTTTGCCAGCCA-ACG-A-GTTG--------------------------TC----------A--------A------AT--TCTG----AT-GAGACCCTATacatgaagtcttcaaatcatcaggatacccaagcacaacaaaagtctggttttga
gi|10 : g-AT---CC---CGTATAA---A-A-TCACGCCAG--CATGCACTTatacacggttattcagatttttgtaatagtgaccaccagaatagccaaatgcatcaaa
gi|13 : ttgatccactccgatattttgttgtcgctcgtatatggtcacatcagcatgcattttagtgacgtaaggttatccaatcaaatacttctacaagaaccaatcaaacctatccttacttgttgaatgcagcaagaacgattctttcggaagtcatccggaacatttcgggattgactgtcactcattcctaccgccaaccattttgctagcgaaaatctg-TTACGTCAA--CATATACTTT-G-G--TG-ACC-TA-AGGACATCCAA-TCAAATGCTT---ACA--------------CAA-TTC---CC---T-A-TTCTGACATA------ATAAATTCAGCT-TT-T-A-C--GGTTTCTTCAGAA-GTCATAATT-----CAAAACAC-TTCAG--GA-AT--CACTG-TCA--CT-TATTCCT-GCCACTAACGATTTTGACA
gi|17 : caatgtttcaatttacaataacaatatccactgaaTCAG--CATG-ACTTT-AAG--TT-ACC-TA-AGATCAT
gi|15 : attctgtataaggtcatgtccgcA-AGGTCATCCAA-TCAAATGCGTC-TACA-AG--A--A----CCAG-T----------T-A-TTCTTGTATG------TTGAATTCAGCATTT-T-A-C--GGACCCTTCGAAA-GTT-----------------AC-TTCAG--GA-TT--CACTG-TCA--CT-TATTTTT-ACCGCCAACAAT------------------TTTG-AT--TAG------T-T---------TATCT-------A--------AAGT-TCAC--TCTG----AT-GTGACCCTGTatccagcatttacagttccttcgaatgtcatccaaaacacttcaagattcactgtcacttactcctaccaccatgattctg
gi|18 : cCTTC-TACA-A---A--A----CCAA---CAAACC---TTA-TTCTTACATG------TTTGATTCAGC--AT-T-A-T--TGCTCATTTGACA-GCCATTATC-----CAAAACAC-TT-TG--AA-TT--CACTGTTCA--CT-TGATTTT-CGTGC-------TTTGTGAA-TG-AGG-A-CTTG-AT--atacaggatgtcatc
gi|17 : CATG------CTGAATCCAGCA-TT-T-A-C--AGTTCCTTCGAA----TGTCATC-----CAAAACAC-TTCAA--GA-TT--CACTG-TCA--CT-TACTCCT-ACCACC-ATGATTCTG
gi|2 : attctgtataaggtcatgtccgcatgatcttaggtaacttaaagtTTCATCA--T-T-A-TC-AGTTCCTTCAGAT-GTCATTATC-----CGGAACAC-TTTGG--GA-TT--GACTG-TCA--CT-TATTCCT-GTCACTAACGAATTTACCAG-CG-ACG-A---TGAAT--TGG------G-T---------GGTGT-------A--------AAGT-GCAT--GGTG----AC-GTGACTCTAT
gi|16 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCTG-TCA--GTATATTCCT-ACCACAAACAATTTTGCCTG-TG-ATG-----------------------------------TCT-------A--------AAGT-TCAT--TCTG----AT-GTGACCCTATacagaatgtcttcatatctta
gi|22 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctctctTTTTGCCAG-TG-ATG-A-TTTG-AT--TGG------T-A---------TTTCT-------T--------AAGT-TCAT--TCTG----AT-CTGACCCTATCatacagaatgtcttcagattcagaatagtat
gi|3 : G-TGCACGCA-TTTG-AT--TGGATGACCT-TAGG------TCACA-------A--------AAGT-GAAT--TCTA----AT-GTGACCCTAT
gi|9 : catccactG-G-TTTG-AG--TGG------T------------CACC-------A--------AAGT-GCAT--GCTA----AC-ATGATCCTATaagcctaccaatcaaacctatccttacatgttgaattttgtatctgttggttctttggaggtcattatttgaaatacttccggattcactgtcagttaattttaccaccaaaagttttaccaacaatttgattggtttatctaaagttcattccgatgtacgtgaccctatacatgaagtcttcaaatcatcaggatacccaagcacaacaaaagtctggttttga
gi|1 : agatgtcctgt-A-TTTG-AT--TGGATGACCT-TAGG------TCACC-------A--------AAGT-GCAT--GCTG----GT-GTGACCTTATtattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaattttgattggtttatctaaagtgcatgctgatgcgaccctacacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|11 : ctatcatcttatttgattcactctgatattctgatgtctctggaatacaaagatctgaaaacatcctgt-A-TTTG-AT--TGGATGACCT-TAGG------TCACC-------A--------AAGT-GTAT--GCTG----AC-GTGACCCTATACGGgcttcaacatgaaccaatcaaacccactcttacatgtacatgttgaattcagcatttaaagttccttcattagtcattattcagaacacttcaggattcactgttgcatattcctaccaccaacaatttagacagcaacaatttgattggtttctctaaagttcatcatgatgtgaccctatgcggaatgtctgcagatctt
gi|10 : agacatc-A-TTTG-AT--TGGATAACCT-TACG------TCACT-------A--------AAAT-GCAT--GCTG----AT-GTGACCATATACGgcttctacaagaaccaatcaaacctacaagtttaagtcagcatttacagttccttcggatgtcattaaccatgacacttcgggatttacgttcactttttcttactgtcatcgattttgccagcgacgatttgattggtttatctaaagttcattctgatgtgaccctacacgggatgtctttaga
gi|2 : ttgatccactccgatattttgttgtcgct-A-TTTG-AT--TGG------A-TGA-------TCT-T-------AAGTCATCGAAGT-GCAT--GCTG----AT-GTGACCATAacttctacaagaaccaatcaaacctatccttacttgttgaatgcagcaagaacgattctttcggaagtcatccggaacatttcgggattgactgtcactcattcctaccgccaaccattttgctagcgaaaatctgaagtgcatgctggcgtgattttatacgggat
gi|6 : tctgaagacatttcatg-A-TTGG-ATGACGG------T-T---------TCTATGGTAACAA--------AAGC-GCAT--GCTG----AT-GTGACCTTAgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtaaagtgcatggtgacgtgactctatacagaatgtcttcatatctta
gi|4 : gcatccatttg-TTTG-AT--TGGATGACAT-TAGG------TCACC-------A--------AAGT-TTAT--GCTG----AC-GTGATCCTATgcttctcccagtaaaccagttcaaaattattcttatatgatgaataagctttactgttccttcggaattcgttatccggaacacggaattcaactgtcacccttttccttaccagcaacaattttgccagccaacgagttgtcaaattctgatgagaccctatatacacggttattcagatttttgtaatagtgaccaccagaatagccaaatgcatcaaa
gi|14 : caatattttgatatcacgaatacaacactctgaagatatcctgt-TTTG-AT--TGG------A-TGACCTAAGGTCACC-------A--------AAGT-GCAT--GCTG----AT-GTAACCCTAcgctcctacaagaaccagtcaaacttattcttccgtgatggattcagcacttaacagttcttgtggaagtcattatccagaccactttgggatttactgtcacttattcctactaccaacgattttgccacagacgatttaattggtttatctaaaatagcatgctggcgtggcccaatacaagatgccttc
Alignments
lowQualScore : 222 1 11 1
lowQualScore : 0 4 1 55 2 33 5555555 1 222 4444 1 111 3 1 33333 22 11 00 0 1 1 3 4444 2 2 2 33 33 5555 5 5 2 777777 44 2 2 55555 2 3 2 2 0 33 2 2 2 33 2 2 2 2 666 555 2 8888 77 777 5555 2 2
lowQualScore : . . . .. . .. ....... . ... .... . ... . . ..... .. .. .. . . . . .... . . . .. .. .... . . . ...... .. . . ..... . . . . . .. . . . .. . . . . ... ... . .... .. ... .... . .
lowQualScore : 8 0 4 55 7 11 7777777 5 777 8888 5 999 1 9 44444 00 88 00 9 7 7 8 0000 4 4 5 44 22 0000 0 0 5 222222 99 4 2 55555 4 1 4 4 6 22 2 2 2 11 2 2 2 5 444 111 7 6666 77 000 7777 7 7
consensus : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-ATTT-A-C--GGTTCCTTCGGAA-GTCATTATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCAT--NCTG----AC-GTGACCC-TATACGG
Reference ( family-1054 ) : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-ATTT-A-C--GGTTCCTTCGGAA-GTCGTTATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTCTCTAAAGT-GCAT--GCTG----AC-GTGACCC-TATACGG
gi|1 : GATTCACTCTGATATTCTGATG-TCTCTGGAATACAAAG-ATC--TGAAA-------AC-AT---CC---TGTAT-AA--G-G-TCACA----CCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCAACA-TG--A--A----CCAAT-CAAACCC-A-CTCTTACATGTACATG-TTGAATTCAGC-ATTT-A-A--AGTTCCTTCATTA-GTCATTATTCAGAAC-AC-TTCAG--GAT-TC-ACTG-TTG--CA-T-AT-TCCT-ACCACCAACAATTTAGACAG-CAACAA-TTTG-ATTGGT-TTCTCTAAAGT-TCAT--CATG----AT-GTGACCC-TATGCGG
gi|1 : ctatcatcttatttAAG-ATC--TGCAG-------AC-AT---TC---CGCAT-AG--G-G-TCACA----TCAT--GATGA-ACTTT-AGAGA----A-A------CCAA-TCAAATTGTTGC-TGTCTAaatgtctgcagatctt
gi|10 : ctatcatcttatttgattcactctgatattctgatgtctctggaatacaaagatctgaaaacatcctgtataaggtcacaccagcatgcactttggtgacctaaggtcatccaatcaaatgcttcaacatgaaccaatcaaacccactcttacatgtacatgttgaattcagcatttaaagttccttcattagtcattattcagaacacttcaggattcactgttgcatattcctaccaccaacaattGATCCACTCCGATATTTTGTTG-TCGCT------------------------------------------CGTAT-AT--G-G-TCACA----TCAG--CATGC-ATTTT-AGTGACG-TA-AGGTTATCCAA-TCAAA----TAC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TCCTTACT------TG-TTGAATGCAGC-AAGA-A-C--GATTCTTTCGGAA-GTC---ATCCGGAAC-AT-TTCGG--GAT-TG-ACTG-TCA--CT-C-AT-TCCT-ACCGCCAACCATTTTGCTAG-CGAAAA----------------TCTGAAGT-GCAT--GCTG----GC-GTGATTT-TATACGG
gi|11 : ttAG-------AC-AT---CC---CGTAT-A---G-GGTCACG----TCAG--CATAC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-------CA------AG-TTTAAGTCAGC-ATTT-A-C--AGTTCCTTCGGAT-GTCATTAACCATGAC-AC-TTCGG--GAT-TT-ACGT-TCA--CT-T-TT-TCTT-ACTGTCATCGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCAT--TCTG----AT-GTGACCC-TACACGGgat
gi|11 : TC--TAAAG-------AC-AT---CC---CGTGT-AG--G-G-TCACA----TCAG--AATGA-ACTTT------------AGATAAACCAA-TCAAA----Tgatgtctttaga
gi|12 : agacatcccgtatagggtcacgtcagcatacactttggtgacctaaggtcatccaatcaaatgcttctacaagaaccaatcaaacctacaagtttaagtcagcatttacagttccttcggatgtcattaaccatgacacttcgggatttacgttcactttttcttactgtcatcgattttgccagcgacgGATCC-CTGCAATATTATGATG-TTGCT--AACACAAAGCATTCTTGAAGCAATCCAAC-AT---CC---CAT------------CATA----TCAG--CATGC-ACTTT-GGTGA-C-TA-AGGTCATCCAACTCAAA----TGC-T-TGTATA-AG--A--A----CCAAT-CAAACCT-ACTCCTTGAA------TGATTGAATTCAGC-AATT-
gi|13 : ctacatctt-TTACG----TCAA--CATAT-ACTTT-GGTGACC-TA-AGGACATCCAA-TCAAA----TGC-T-T--ACA--------------CAATTC---CCT-A-TTCTGACA------TA-ATAAATTCAGC-TTTT-A-C--GGTTTCTTCAGAA-GTCATAATTCAAAAC-AC-TTCAG--GAA-TC-ACTG-TCA--CT-T-AT-TCCT-GCCACTAACGATTTTGACActatatagttgttatgtagagaatcattaatccaga
gi|14 : caatgtttcaatttacaataacaatatccactgaaAG-------AC-AT---CT---TGTGT-A---G-GGTTACA----TCAG--CATGC-ACTTT-GGTGACC-TT-AGGTCATCCAA-TCAAA----AGC-T-TCTACA-AG--A--A----CCAAT-CAAATCT-A-TTTTTACA------TG-TTGAATTAAGCAATAG-A-T--AGTT-CTTCAG-A-GTCATTACTCAGAAC-TC-TCTGG--GAT-TC-ACAT-T----CC-T-AT-TCCTAACCACCAACAATTT
gi|15 : A-AGGTCATCCAA-TCAAA----TGC-G-TCTACA-AG--A--A----CCAGT-------T-A-TTCTTGTA------TG-TTGAATTCAGC-ATTTTA-C--GGACCCTTCGAAA-GTT-------------AC-TTCAG--GAT-TC-ACTG-TCA--CT-T-AT-TTTT-ACCGCCAACAAT----------------TTTG-ATTAGT-TTATCTAAAGT-TCAC--TCTG----AT-GTGACCC-TGTA
gi|15 : cGATG-------AC-AT---CC---TGTAT-ACAGG-G-TCACA----TCAG--AGTGA-ACTTTAGATAAAC-TA-Atacaggatgtcatc
gi|16 : caaggtcatccaatcaaatgcgtctacaagaaccagttattcttgtatgttgaattcagcattttacggacccttcgaaagttacttcaggattcactgtcacttatttttaccgccaacaattttga-A-C--AGTTCCTT----A-GTA--TATC-GGAATTGC-TTTGG--GAT-TC-ACTG-TTT--CC-T-ATATCC
gi|16 : -TC-TCTG-TCA--GTAT-AT-TCCT-ACCACAAACAATTTTGCCTG-TGATG-----------------TCTAAAGT-TCAT--TCTG----AT-GTGACCC-TATActttgctctttctctctctgtcagtatattcctaccacaaacaattttgcctgtgatgtctaaagttcattctgatgtgaccctatatacagaatgtcttcagattcagaatagtat
gi|16 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctc-ATC--TGAAG-------AC-AT---TC---TGTAT-ATAGG-G-TCACA----TCAG--AATGA-ACTTT-AGtacagaatgtcttcagattcagaatagtat
gi|17 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctctctctgtcagtatattcctaccacaaacaattttgcctgtgatgt----TCAG--CATG--ACTTTAAGTTACC-TA-AGATCATtcagaatagtat
gi|17 : attctgtataaggtcatgtccgcCA------TG-CTGAATCCAGC-ATTT-A-C--AGTTCCTTCGAAT-GTC---ATCCAAAAC-AC-TTCAA--GAT-TC-ACTG-TCA--CT-T-AC-TCCT-ACCACC-ATGATTCTGatccagcatttacagttccttcgaatgtcatccaaaacacttcaagattcactgtcacttactcctaccaccatgattctg
gi|18 : attctgtataaggtcatgtccgcatgatcttaggtaacttaaagtC-T-TCTACA-A---A--A----CCAA--CAAACCTTA-TTCTTACA------TG-TTTGATTCAGC-A-TT-A-T--TGCTCATTTGACA-GCCATTATCCAAAAC-AC-TTT-G--AAT-TC-ACTGTTCA--CT-TGAT-T
gi|19 : TC--TGAAG-------AT-ATTATCT---TGTAA-A---G-GGTCAGG----TAAT--CATTC-ATTTTTGGTGACC-TA-AGGTCATCCAG-TCAAA----TGC-T-TCTACC-AG--A--A----TCAAT-CAAACC-----TCTTACttcgtgctttgtgaatgaggacttgat
gi|2 : TC--TGAAG-------AC-AT---TT---CATGT-AT--G-G-TCACA----TCAG--CATGC-ACTTC-GATGACT-TA-AGATCATCCAA-TCAAA----TGC-T-GCTACG-AG--A--A----CCAAtcttggtgtt
gi|2 : TTCATC-ATTA-T-C--AGTTCCTTCAGAT-GTCATTATCCGGAAC-AC-TTTGG--GAT-TG-ACTG-TCA--CT-T-AT-TCCT-GTCACTAACGAATTTACCAG-CGACGA---TGAATTGGG-TGGTGTAAAGT-GCAT--GGTG----AC-GTGACTC-TATACAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtaaagtgcatggtgacgtgactctatacagaatgtcttcatatctta
gi|2 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAAG-ATA--TGAAG-------AC-AT---TC---TGTAT-A---GAG-TCACG----TCAC--CATGC-ACTTT-aatgtcttcatatctta
gi|20 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtTG-TCACT--AATACCGAG-ATC--TGAAG-------AC-CT---CC---TGTAA-AG--G-G-TCACT----TCAGAACAAGC-ATTa
gi|21 : G-TCGCT--AATACATAG-ATC--CGAAG-------AC-AT---CC---GGTAT-A---GAG-TTACA----TTAA--CATGcaagatctacggcaacatctagaaaaatcgtagatcatact
gi|22 : gatctttgatcctctattataTTTTGCCAG-TGATGA-TTTG-ATTGGT-ATTTCTTAAGT-TCAT--TCTG----AT-CTGACCC-TAT
gi|3 : C-AT---CC---ACTAT-A---G-GGTCACA----TTAG--AATTC-ACTTT-TGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-G-TGCACA-AG--CCTA----CCAAT-CAAACCT-A-TCCTTACA------TG-TTGAATTTTGT-ATCT-GTT--GGTT-CTTTGGAG-GTCATTATTTGAAAT-AC-TTCCG--GAT-TC-ACTG-TCA--GT-T-AA-TTTT-ACCACCAAAAGTTTTACCA----ACAA-TTTG-ATTGGT-TTATCTAAAGT-TCAT--TCCGATGTAC-GTGACCC-TATACcc
gi|3 : G-ATT--TGAAG-------AC-TT---CA---TGTAT-AG--G-G-TCACGTACATCGG--AATGA-ACTTT------------AGATAAACCAA-TCAAA----Tatgaagtcttcaaatcatcaggatacccaagcacaacaaaagtctggttttga
gi|4 : catccactatagggtcacattagaattcacttttgtgacctaaggtcatccaatcaaatgcgtgcacaagcctaccaatcaaacctatccttacatgttgaattttgtatctgttggttctttggaggtcattatttgaaatacttccggattcactgtcagttaattttaccaccaaaagttttaccaacaCAATATTTTGATA-TCACG--AATACAACA-CTC--TGAAG-------AT-AT---CC---TGTAT-A---G-GATCACG----TCAG--CATAA-ACTTT-GGTGACC-TA-ATGTCATCCAA-TCAAA----CGC-T-CCTACA-AG--A--A----CCAGT-CAAACTT-A-TTCTTCCG------TG-ATGGATTCAGC-ACTT-AAC--AGTTCTTGTGGAA-GTCATTATCCAGACC-AC-TTTGG--GAT-TT-ACTG-TCA--CT-T-AT-TCCT-ACTACCAACGATTTTGCCAC-AGACGA-TTTA-ATTGGT-TTATCTAAAATAGCAT--GCTG----GC-GTGGCCC-AATACatcaggatacccaagcacaacaaaagtctggttttga
gi|4 : GAAG-------GC-AT---CT---TGTATTG---G-G-CCACG----CCAG--CATGCTATTTT------------AGATAAACCAA-TTAAA----Taagatgccttc
gi|5 : caatattttgatatcacgaatacaacactctgaagatatcctgtataggatcacgtcagcataaactttggtgacctaatgtcatccaatcaaacgctcctacaagaaccagtcaaacttattcttccgtgatggattcagcacttaacagttcttgtggaagtcattatccagaccactttgggatttactgtcacttattcctactaccaacgattttgccacagacgGATCCACTCCAGTATTTTGATG-TCACT--AGTACATAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CACGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TTTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTGCA------TG-TTGAATTCAGC-AATT-A-T--GGTTCCTTCGGAA-ATTATCATTTGGAAC-AC-TTCTG--GAC-TG-ACCG-TCA--CT-T-AT-TCCT-ACTGCCAATGATTTTGCCAG-TGACGA-TTTG-ATTGGT-TTCTCTAAAGT-GCAT--GCTG----AC-GCGACCC-TATTCGG
gi|6 : C-AT---CCATTTGTA--A---G-G-TCACA----TCAG--CATGC-GCTTT-TGTTACCATAGAAACCGTC--A-TCCAA----TGC-T-TCTCCC-AGTAA--A----CCAGTTCAAAATT-A-TTCTTATA------TG-ATGAAT-AAGC--TTT-A-C--TGTTCCTTCGGAA-TTCGTTATCCGGAAC-A----CGG--AAT-TCAACTG-TCACCCT-T-TT-CCTT-ACCAGCAACAATTTTGCCAGCCAACGA-GTTG---------TC---AA------AT--TCTG----AT-GAGACCC-TATA
gi|6 : gGATGCATTTGGCTATTCTGGTGGTCACT--ATTACAAAA-ATC--TGAAT-------A--AC---CG---TGTAT-ATAGG-G-TCTCA----TCAG--AATtacacggttattcagatttttgtaatagtgaccaccagaatagccaaatgcatcaaa
gi|7 : gcatccatttgtaaggtcacatcagcatgcgcttttgttaccatagaaaccgtcatccaatgcttctcccagtaaaccagttcaaaattattcttatatgatgaataagctttactgttccttcggaattcgttatccggaacacggaattcaactgtcacccttttccttaccagcaacaattttgccagccaacgagttgtcaaC-AT---CC---TGTAT-A---G-GGTCAGG----TCAG--CAT------TT-GATGACC-TC-AAGTCCTCCGA-TCAAA----TGC-T-TCTATA-AG--A--A----CCAAT-CAAACCT-A-TT---ACA------TG-ATAAATTAAGC-ATGT-A-C--GATAACGTC---A-GTGATTACCCGGAAC-AC-TTCGG--GAC-TG-ACTG-TCA--CA-T-AT-TCCG-ACCGCCAGTGATTTTGCTAG-TGATGA-TTTG-ATTGGT-TTATCTTAAGT-TCAT--TGTA----AT-ATGACCC-aaa
gi|7 : TCTGATA-T--------TACAAAG-ATC--TGTAG-------AC-AG---CC---CAAAA-AG--G-G-TCATA----TTAC--AATGA-ACT-----------TA-AGATAAACCAA-TCAAA----Tttttgggctgtctacagatctttgtaatatcagagcagattgaagatctggttttaa
gi|8 : catcctgtatagggtcaggtcagcatttgatgacctcaagtcctccgatcaaatgcttctataagaaccaatcaaacctattacatgataaattaagcatgtacgataacgtcagtgattacccggaacacttcgggactgactgtcacatattccgaccgccagtgattttgctagtgatgAG-ATG--TCAAG-------ACTAT---CA---GCTAT-A---G-GGTCACA----TTAG--AATTC-ACTTT-TGTGACT----AGGTCATCCAAGTCAAA----TGCGC-TGTGCACAG--A--AGCTACCAAT-CAAACCTAA-TCCTTAC-------TG--TGAATTT-GT-ATCT-G-TTGAGTTCTGTTGGAGTGTCATTATTTGAAAT-AC-TTCGGCAGATCTC-ACTG-T-A--TT-T-AA-TTTT-ACCACCAAAAGTTTTACCA--CAACA----TG-ATTGGTATTATCTAAAGT-TCATTCGATG----TCAGTGACCCTTATACgcagattgaagatctggttttaa
gi|9 : gtacAG-------AT-GT---CC---TGTAT-A---G-GATCATG----TTAG--CATGC-ACTTT-GGTGACC-ataattcttcaat
gi|9 : GG-TTTG-AGTGGT---CACCAAAGT-GCAT--GCTA----AC-ATGATCC-TATACAGactcaaacctattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaattttgattggtttatctaaagtgcatgctgatgcgaccctacacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|9 : agatgtc--A----CCACT-CAAACCT-A-TT---ACA------TG-CTGTATTCAGC-ATTT-A-T--GGTTCCATCAGAA-GTCATTATCCGAAAC-ACTTTCAG--GAC-TG-ACTC-TCT--AT-T-GT-TCCT-AATGCCAACGATTTTGCCAT-TGACAATTTTG-ATTGGT-TTATCTAAAGT-GCAT--GCTG----AT-GCGACCC-TACACtattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaattttgattggtttatctaaagtgcatgctgatgcgaccctacacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|9 : agatgtcctgtataggatcatgttagcatgcactttggtgCTCTGATATTCTGATG-TTGCC--GATACAAAG-ATT--TGAAG-------AC-AT---TT---TGTGT-AG--G-G-TCGCA----TCAG--CATGC-ACTTT------------AGATAAACCAA-TCAAA----aaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
Alignments
lowQualScore : 222 1 11
lowQualScore : 0 4 1 55 2 33 5555555 1 222 4444 1 111 3 1 33333 22 11 00 0 1 1 3 4444 2 2 2 33 33 5555 5 2 5 777777 2 4 2 444 55555 333 2 33 2 2 0 33 2 2 2 33 2 2 2 2 666 555 2 2 00 44 1 33 5555 2 2
lowQualScore : . . . .. . .. ....... . ... .... . ... . . ..... .. .. .. . . . . .... . . . .. .. .... . . . ...... . . . ... ..... ... . .. . . . .. . . . .. . . . . ... ... . . .. .. . .. .... . .
lowQualScore : 8 0 4 55 7 11 7777777 5 777 8888 5 999 1 9 44444 00 88 00 9 7 7 8 0000 4 4 5 44 22 0000 0 5 0 222222 5 7 4 111 99999 999 2 66 4 4 6 22 2 2 2 11 2 2 2 5 444 111 7 7 88 99 0 77 7777 7 7
consensus : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-A-TT---TA-C--GGTTCCT---TCGGAA-GTCATT-ATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AC-GTGACCC-TATACGG
Reference ( family-1054 ) : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-A-TT---TA-C--GGTTCCT---TCGGAA-GTCATT-ATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATNC--TG----AC-GTGACCC-TATACGG
gi|1 : GATTCACTCTGATATTCTGATG-TCTCTGGAATACAAAG-ATC--TGAAA-------AC-AT---CC---TGTAT-AA--G-G-TCACA----CCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCAACA-TG--A--A----CCAAT-CAAACCC-A-CTCTTACATGTACATG-TTGAATTCAGC-A-TT---TA-A--AGTTCCT---TCATTA-GTCATT-ATTCAGAAC-AC-TTCAG--GAT-TC-ACTG-TTG--CA-T-AT-TCCT-ACCACCAACAATTTAGACAG-CAACAA-TTTG-ATTGGT-TTCTCTAAAGT-TCATCA--TG----AT-GTGACCC-TATGCGG
gi|1 : ctatcatcttatttAAG-ATC--TGCAG-------AC-AT---TC---CGCAT-AG--G-G-TCACA----TCAT--GATGA-ACTTT-AGAGA----A-A------CCAA-TCAAATTGTTGC-TGTCTAaatgtctgcagatctt
gi|10 : ctatcatcttatttgattcactctgatattctgatgtctctggaatacaaagatctgaaaacatcctgtataaggtcacaccagcatgcactttggtgacctaaggtcatccaatcaaatgcttcaacatgaaccaatcaaacccactcttacatgtacatgttgaattcagcatttaaagttccttcattagtcattattcagaacacttcaggattcactgttgcatattcctaccaccaacaattGATCCACTCCGATATTTTGTTG-TCGCT------------------------------------------CGTAT-AT--G-G-TCACA----TCAG--CATGC-ATTTT-AGTGACG-TA-AGGTTATCCAA-TCAAA----TAC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TCCTTACT------TG-TTGAATGCAGC-A-AG---AA-C--GATTCTT---TCGGAA-GTC----ATCCGGAAC-AT-TTCGG--GAT-TG-ACTG-TCA--CT-C-AT-TCCT-ACCGCCAACCATTTTGCTAG-CGA-AA---------------ATCTGAAGT-GCATGC--TG----GC-GTGATTT-TATACGG
gi|11 : ttAG-------AC-AT---CC---CGTAT-A---G-GGTCACG----TCAG--CATAC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-------CA------AG-TTTAAGTCAGC-A-TT---TA-C--AGTTCCT---TCGGAT-GTCATT-AACCATGAC-AC-TTCGG--GAT-TT-ACGT-TCA--CT-T-TT-TCTT-ACTGTCATCGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AT-GTGACCC-TACACGGgat
gi|11 : TC--TAAAG-------AC-AT---CC---CGTGT-AG--G-G-TCACA----TCAG--AATGA-ACTTT------------AGATAAACCAA-TCAAA----Tgatgtctttaga
gi|12 : agacatcccgtatagggtcacgtcagcatacactttggtgacctaaggtcatccaatcaaatgcttctacaagaaccaatcaaacctacaagtttaagtcagcatttacagttccttcggatgtcattaaccatgacacttcgggatttacgttcactttttcttactgtcatcgattttgccagcgacgGATCC-CTGCAATATTATGATG-TTGCT--AACACAAAGCATTCTTGAAGCAATCCAAC-AT---CC---CAT------------CATA----TCAG--CATGC-ACTTT-GGTGA-C-TA-AGGTCATCCAACTCAAA----TGC-T-TGTATA-AG--A--A----CCAAT-CAAACCT-ACTCCTTGAA------TGATTGAATTCAGCAA-TTCTATA-T--AGTTGTTATGTAGAGA-ATCATTAATCCAGA
gi|13 : ctacatctt-TTACG----TCAA--CATAT-ACTTT-GGTGACC-TA-AGGACATCCAA-TCAAA----TGC-T-T--ACA--------------CAATTC---CCT-A-TTCTGACA------TA-ATAAATTCAGC-T-TT---TA-C--GGTTTCT---TCAGAA-GTCATA-ATTCAAAAC-AC-TTCAG--GAA-TC-ACTG-TCA--CT-T-AT-TCCT-GCCACTAACGATTTTGACA
gi|14 : caatgtttcaatttacaataacaatatccactgaaAG-------AC-AT---CT---TGTGT-A---G-GGTTACA----TCAG--CATGC-ACTTT-GGTGACC-TT-AGGTCATCCAA-TCAAA----AGC-T-TCTACA-AG--A--A----CCAAT-CAAATCT-A-TTTTTACA------TG-TTGAATTAAGCAA-TA---GA-T--AGTT-CT---TCAG-A-GTCATT-ACTCAGAAC-TC-TCTGG--GAT-TC-ACAT-T----CC-T-AT-TCCTAACCACCAACAATTT
gi|15 : A-AGGTCATCCAA-TCAAA----TGC-G-TCTACA-AG--A--A----CCAGT-------T-A-TTCTTGTA------TG-TTGAATTCAGC-ATTT---TA-C--GGACCCT---TCGAAA-GT-------------T-AC-TTCAG--GAT-TC-ACTG-TCA--CT-T-AT-TTTT-ACCGCCAACAAT----------------TTTG-ATTAGT-TTATCTAAAGT-TCACTC--TG----AT-GTGACCC-TGTA
gi|15 : cGATG-------AC-AT---CC---TGTAT-ACAGG-G-TCACA----TCAG--AGTGA-ACTTTAGATAAAC-TA-Atacaggatgtcatc
gi|16 : caaggtcatccaatcaaatgcgtctacaagaaccagttattcttgtatgttgaattcagcattttacggacccttcgaaagttacttcaggattcactgtcacttatttttaccgccaacaattttgaA-C--AGTTCCT---T----A-GT-AT--ATC-GGAATTGC-TTTGG--GAT-TC-ACTG-TTT--CC-T-ATATCC
gi|16 : -TC-TCTG-TCA--GTAT-AT-TCCT-ACCACAAACAATTTTGCCTG-TGATG-----------------TCTAAAGT-TCATTC--TG----AT-GTGACCC-TATActttgctctttctctctctgtcagtatattcctaccacaaacaattttgcctgtgatgtctaaagttcattctgatgtgaccctatatacagaatgtcttcagattcagaatagtat
gi|16 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctc-ATC--TGAAG-------AC-AT---TC---TGTAT-ATAGG-G-TCACA----TCAG--AATGA-ACTTT-AGtacagaatgtcttcagattcagaatagtat
gi|17 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctctctctgtcagtatattcctaccacaaacaattttgcctgtgatgt----TCAG--CATG--ACTTTAAGTTACC-TA-AGATCATtcagaatagtat
gi|17 : attctgtataaggtcatgtccgcCA------TG-CTGAATCCAGC-A-TT---TA-C--AGTTCCT---TCGAAT-GTCAT----CCAAAAC-AC-TTCAA--GAT-TC-ACTG-TCA--CT-T-AC-TCCT-ACCACC-ATGATTCTGatccagcatttacagttccttcgaatgtcatccaaaacacttcaagattcactgtcacttactcctaccaccatgattctg
gi|18 : attctgtataaggtcatgtccgcatgatcttaggtaacttaaagtC-T-TCTACA-A---A--A----CCAA--CAAACCTTA-TTCTTACA------TG-TTTGATTCAGC-A--T---TA-T--TGCTCAT---TTGACA-GCCATT-ATCCAAAAC-AC-TTT-G--AAT-TC-ACTGTTCA--CT-TGAT-T
gi|19 : TC--TGAAG-------AT-ATTATCT---TGTAA-A---G-GGTCAGG----TAAT--CATTC-ATTTTTGGTGACC-TA-AGGTCATCCAG-TCAAA----TGC-T-TCTACC-AG--A--A----TCAAT-CAAACC-----TCTTACttcgtgctttgtgaatgaggacttgat
gi|2 : TC--TGAAG-------AC-AT---TT---CATGT-AT--G-G-TCACA----TCAG--CATGC-ACTTC-GATGACT-TA-AGATCATCCAA-TCAAA----TGC-T-GCTACG-AG--A--A----CCAAtcttggtgtt
gi|2 : TTCATC-A-TT---AT-C--AGTTCCT---TCAGAT-GTCATT-ATCCGGAAC-AC-TTTGG--GAT-TG-ACTG-TCA--CT-T-AT-TCCT-GTCACTAACGAATTTACCAG-CGACGA---TGAATTGGG-TGGTGTAAAGT-GCATGG--TG----AC-GTGACTC-TATACAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtaaagtgcatggtgacgtgactctatacagaatgtcttcatatctta
gi|2 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAAG-ATA--TGAAG-------AC-AT---TC---TGTAT-A---GAG-TCACG----TCAC--CATGC-ACTTT-aatgtcttcatatctta
gi|20 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtTG-TCACT--AATACCGAG-ATC--TGAAG-------AC-CT---CC---TGTAA-AG--G-G-TCACT----TCAGAACAAGC-ATTa
gi|21 : G-TCGCT--AATACATAG-ATC--CGAAG-------AC-AT---CC---GGTAT-A---GAG-TTACA----TTAA--CATGcaagatctacggcaacatctagaaaaatcgtagatcatact
gi|22 : gatctttgatcctctattataTTTTGCCAG-TGATGA-TTTG-ATTGGT-ATTTCTTAAGT-TCATTC--TG----AT-CTGACCC-TAT
gi|3 : C-AT---CC---ACTAT-A---G-GGTCACA----TTAG--AATTC-ACTTT-TGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-G-TGCACA-AG--CCTA----CCAAT-CAAACCT-A-TCCTTACA------TG-TTGAATTTTGT-A-TC---TGTT--GGTT-CT---TTGGAG-GTCATT-ATTTGAAAT-AC-TTCCG--GAT-TC-ACTG-TCA--GT-T-AA-TTTT-ACCACCAAAAGTTTTACCA----ACAA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--CGATGTAC-GTGACCC-TATACcc
gi|3 : G-ATT--TGAAG-------AC-TT---CA---TGTAT-AG--G-G-TCACGTACATCGG--AATGA-ACTTT------------AGATAAACCAA-TCAAA----Tatgaagtcttcaaatcatcaggatacccaagcacaacaaaagtctggttttga
gi|4 : catccactatagggtcacattagaattcacttttgtgacctaaggtcatccaatcaaatgcgtgcacaagcctaccaatcaaacctatccttacatgttgaattttgtatctgttggttctttggaggtcattatttgaaatacttccggattcactgtcagttaattttaccaccaaaagttttaccaacaCAATATTTTGATA-TCACG--AATACAACA-CTC--TGAAG-------AT-AT---CC---TGTAT-A---G-GATCACG----TCAG--CATAA-ACTTT-GGTGACC-TA-ATGTCATCCAA-TCAAA----CGC-T-CCTACA-AG--A--A----CCAGT-CAAACTT-A-TTCTTCCG------TG-ATGGATTCAGC-A-CT---TAAC--AGTTCTT---GTGGAA-GTCATT-ATCCAGACC-AC-TTTGG--GAT-TT-ACTG-TCA--CT-T-AT-TCCT-ACTACCAACGATTTTGCCAC-AGACGA-TTTA-ATTGGT-TTATCTAAAATAGCATGC--TG----GC-GTGGCCC-AATACatcaggatacccaagcacaacaaaagtctggttttga
gi|4 : GAAG-------GC-AT---CT---TGTATTG---G-G-CCACG----CCAG--CATGCTATTTT------------AGATAAACCAA-TTAAA----Taagatgccttc
gi|5 : caatattttgatatcacgaatacaacactctgaagatatcctgtataggatcacgtcagcataaactttggtgacctaatgtcatccaatcaaacgctcctacaagaaccagtcaaacttattcttccgtgatggattcagcacttaacagttcttgtggaagtcattatccagaccactttgggatttactgtcacttattcctactaccaacgattttgccacagacgGATCCACTCCAGTATTTTGATG-TCACT--AGTACATAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CACGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TTTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTGCA------TG-TTGAATTCAGC-A-AT---TA-T--GGTTCCT---TCGGAA-ATTATC-ATTTGGAAC-AC-TTCTG--GAC-TG-ACCG-TCA--CT-T-AT-TCCT-ACTGCCAATGATTTTGCCAG-TGACGA-TTTG-ATTGGT-TTCTCTAAAGT-GCATGC--TG----AC-GCGACCC-TATTCGG
gi|6 : C-AT---CCATTTGTA--A---G-G-TCACA----TCAG--CATGC-GCTTT-TGTTACCATAGAAACCGTC--A-TCCAA----TGC-T-TCTCCC-AGTAA--A----CCAGTTCAAAATT-A-TTCTTATA------TG-ATGAAT-AAGC---TT---TA-C--TGTTCCT---TCGGAA-TTCGTT-ATCCGGAAC-A----CGG--AAT-TCAACTG-TCACCCT-T-TT-CCTT-ACCAGCAACAATTTTGCCAGCCAACGA-GTTG-----------TC-AA------ATTC--TG----AT-GAGACCC-TATA
gi|6 : gGATGCATTTGGCTATTCTGGTGGTCACT--ATTACAAAA-ATC--TGAAT-------A--AC---CG---TGTAT-ATAGG-G-TCTCA----TCAG--AATtacacggttattcagatttttgtaatagtgaccaccagaatagccaaatgcatcaaa
gi|7 : gcatccatttgtaaggtcacatcagcatgcgcttttgttaccatagaaaccgtcatccaatgcttctcccagtaaaccagttcaaaattattcttatatgatgaataagctttactgttccttcggaattcgttatccggaacacggaattcaactgtcacccttttccttaccagcaacaattttgccagccaacgagttgtcaaC-AT---CC---TGTAT-A---G-GGTCAGG----TCAG--CAT------TT-GATGACC-TC-AAGTCCTCCGA-TCAAA----TGC-T-TCTATA-AG--A--A----CCAAT-CAAACCT-A-TT---ACA------TG-ATAAATTAAGC-A-TG---TA-C--GATAACG---TC---A-GTGATT-ACCCGGAAC-AC-TTCGG--GAC-TG-ACTG-TCA--CA-T-AT-TCCG-ACCGCCAGTGATTTTGCTAG-TGATGA-TTTG-ATTGGT-TTATCTTAAGT-TCATTG--TA----AT-ATGACCC-aaa
gi|7 : TCTGATA-T--------TACAAAG-ATC--TGTAG-------AC-AG---CC---CAAAA-AG--G-G-TCATA----TTAC--AATGA-ACT-----------TA-AGATAAACCAA-TCAAA----Tttttgggctgtctacagatctttgtaatatcagagcagattgaagatctggttttaa
gi|8 : catcctgtatagggtcaggtcagcatttgatgacctcaagtcctccgatcaaatgcttctataagaaccaatcaaacctattacatgataaattaagcatgtacgataacgtcagtgattacccggaacacttcgggactgactgtcacatattccgaccgccagtgattttgctagtgatgAG-ATG--TCAAG-------ACTAT---CA---GCTAT-A---G-GGTCACA----TTAG--AATTC-ACTTT-TGTGACT----AGGTCATCCAAGTCAAA----TGCGC-TGTGCACAG--A--AGCTACCAAT-CAAACCT-AATCCTTAC-------TG-T-GAATTT-GT-A-TC---TG-TTGAGTTCTG---TTGGAGTGTCATT-ATTTGAAAT-AC-TTCGGCAGATCTC-ACTG-T-A--TT-T-AA-TTTT-ACCACCAAAAGTTTTACCA--CAACA----TG-ATTGGTATTATCTAAAGT-TCATTCGATG----TCAGTGACCCTTATACgcagattgaagatctggttttaa
gi|9 : gtacAG-------AT-GT---CC---TGTAT-A---G-GATCATG----TTAG--CATGC-ACTTT-GGTGACC-ataattcttcaat
gi|9 : GG-TTTG-AGTGGT-C-ACC-AAAGT-GCATGC--TA----AC-ATGATCC-TATACAGactcaaacctattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaattttgattggtttatctaaagtgcatgctgatgcgaccctacacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|9 : agatgtc--A----CCACT-CAAACCT-A-TT---ACA------TG-CTGTATTCAGC-A-TT---TA-T--GGTTCCA---TCAGAA-GTCATT-ATCCGAAAC-ACTTTCAG--GAC-TG-ACTC-TCT--AT-T-GT-TCCT-AATGCCAACGATTTTGCCAT-TGACAATTTTG-ATTGGT-TTATCTAAAGT-GCATGC--TG----AT-GCGACCC-TACACtattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaattttgattggtttatctaaagtgcatgctgatgcgaccctacacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|9 : agatgtcctgtataggatcatgttagcatgcactttggtgCTCTGATATTCTGATG-TTGCC--GATACAAAG-ATT--TGAAG-------AC-AT---TT---TGTGT-AG--G-G-TCGCA----TCAG--CATGC-ACTTT------------AGATAAACCAA-TCAAA----aaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
Alignments
lowQualScore : 222 1 11
lowQualScore : 0 4 1 55 2 33 5555555 1 222 4444 1 111 3 1 33333 22 11 00 0 1 1 3 4444 2 2 2 33 33 5555 5 2 5 777777 2 4 2 444 55555 333 2 33 2 2 0 33 2 2 2 33 2 2 2 2 666 555 2 2 00 44 1 33 5555 2 2
lowQualScore : . . . .. . .. ....... . ... .... . ... . . ..... .. .. .. . . . . .... . . . .. .. .... . . . ...... . . . ... ..... ... . .. . . . .. . . . .. . . . . ... ... . . .. .. . .. .... . .
lowQualScore : 8 0 4 55 7 11 7777777 5 777 8888 5 999 1 9 44444 00 88 00 9 7 7 8 0000 4 4 5 44 22 0000 0 5 0 222222 5 7 4 111 99999 999 2 66 4 4 6 22 2 2 2 11 2 2 2 5 444 111 7 7 88 99 6 77 7777 7 7
consensus : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-A-TT---TA-C--GGTTCCT---TCGGAA-GTCATT-ATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AC-GTGACCC-TATACGG
Reference ( family-1054 ) : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-A-TT---TA-C--GGTTCCT---TCGGAA-GTCATT-ATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AC-GTGACCC-TATACGG
gi|1 : GATTCACTCTGATATTCTGATG-TCTCTGGAATACAAAG-ATC--TGAAA-------AC-AT---CC---TGTAT-AA--G-G-TCACA----CCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCAACA-TG--A--A----CCAAT-CAAACCC-A-CTCTTACATGTACATG-TTGAATTCAGC-A-TT---TA-A--AGTTCCT---TCATTA-GTCATT-ATTCAGAAC-AC-TTCAG--GAT-TC-ACTG-TTG--CA-T-AT-TCCT-ACCACCAACAATTTAGACAG-CAACAA-TTTG-ATTGGT-TTCTCTAAAGT-TCATCA--TG----AT-GTGACCC-TATGCGG
gi|1 : ctatcatcttatttAAG-ATC--TGCAG-------AC-AT---TC---CGCAT-AG--G-G-TCACA----TCAT--GATGA-ACTTT-AGAGA----A-A------CCAA-TCAAATTGTTGC-TGTCTAaatgtctgcagatctt
gi|10 : ctatcatcttatttgattcactctgatattctgatgtctctggaatacaaagatctgaaaacatcctgtataaggtcacaccagcatgcactttggtgacctaaggtcatccaatcaaatgcttcaacatgaaccaatcaaacccactcttacatgtacatgttgaattcagcatttaaagttccttcattagtcattattcagaacacttcaggattcactgttgcatattcctaccaccaacaattGATCCACTCCGATATTTTGTTG-TCGCT------------------------------------------CGTAT-AT--G-G-TCACA----TCAG--CATGC-ATTTT-AGTGACG-TA-AGGTTATCCAA-TCAAA----TAC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TCCTTACT------TG-TTGAATGCAGC-A-AG---AA-C--GATTCTT---TCGGAA-GTC----ATCCGGAAC-AT-TTCGG--GAT-TG-ACTG-TCA--CT-C-AT-TCCT-ACCGCCAACCATTTTGCTAG-CGA-AA---------------ATCTGAAGT-GCATGC--TG----GC-GTGATTT-TATACGG
gi|11 : ttAG-------AC-AT---CC---CGTAT-A---G-GGTCACG----TCAG--CATAC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-------CA------AG-TTTAAGTCAGC-A-TT---TA-C--AGTTCCT---TCGGAT-GTCATT-AACCATGAC-AC-TTCGG--GAT-TT-ACGT-TCA--CT-T-TT-TCTT-ACTGTCATCGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AT-GTGACCC-TACACGGgat
gi|11 : TC--TAAAG-------AC-AT---CC---CGTGT-AG--G-G-TCACA----TCAG--AATGA-ACTTT------------AGATAAACCAA-TCAAA----Tgatgtctttaga
gi|12 : agacatcccgtatagggtcacgtcagcatacactttggtgacctaaggtcatccaatcaaatgcttctacaagaaccaatcaaacctacaagtttaagtcagcatttacagttccttcggatgtcattaaccatgacacttcgggatttacgttcactttttcttactgtcatcgattttgccagcgacgGATCC-CTGCAATATTATGATG-TTGCT--AACACAAAGCATTCTTGAAGCAATCCAAC-AT---CC---CAT------------CATA----TCAG--CATGC-ACTTT-GGTGA-C-TA-AGGTCATCCAACTCAAA----TGC-T-TGTATA-AG--A--A----CCAAT-CAAACCT-ACTCCTTGAA------TGATTGAATTCAGCAA-TTCTATA-T--AGTTGTTATGTAGAGA-ATCATTAATCCAGA
gi|13 : ctacatctt-TTACG----TCAA--CATAT-ACTTT-GGTGACC-TA-AGGACATCCAA-TCAAA----TGC-T-T--ACA--------------CAATTC---CCT-A-TTCTGACA------TA-ATAAATTCAGC-T-TT---TA-C--GGTTTCT---TCAGAA-GTCATA-ATTCAAAAC-AC-TTCAG--GAA-TC-ACTG-TCA--CT-T-AT-TCCT-GCCACTAACGATTTTGACA
gi|14 : caatgtttcaatttacaataacaatatccactgaaAG-------AC-AT---CT---TGTGT-A---G-GGTTACA----TCAG--CATGC-ACTTT-GGTGACC-TT-AGGTCATCCAA-TCAAA----AGC-T-TCTACA-AG--A--A----CCAAT-CAAATCT-A-TTTTTACA------TG-TTGAATTAAGCAA-TA---GA-T--AGTT-CT---TCAG-A-GTCATT-ACTCAGAAC-TC-TCTGG--GAT-TC-ACAT-T----CC-T-AT-TCCTAACCACCAACAATTT
gi|15 : A-AGGTCATCCAA-TCAAA----TGC-G-TCTACA-AG--A--A----CCAGT-------T-A-TTCTTGTA------TG-TTGAATTCAGC-ATTT---TA-C--GGACCCT---TCGAAA-GT-------------T-AC-TTCAG--GAT-TC-ACTG-TCA--CT-T-AT-TTTT-ACCGCCAACAAT----------------TTTG-ATTAGT-TTATCTAAAGT-TCACTC--TG----AT-GTGACCC-TGTA
gi|15 : cGATG-------AC-AT---CC---TGTAT-ACAGG-G-TCACA----TCAG--AGTGA-ACTTTAGATAAAC-TA-Atacaggatgtcatc
gi|16 : caaggtcatccaatcaaatgcgtctacaagaaccagttattcttgtatgttgaattcagcattttacggacccttcgaaagttacttcaggattcactgtcacttatttttaccgccaacaattttgaA-C--AGTTCCT---T----A-GT-AT--ATC-GGAATTGC-TTTGG--GAT-TC-ACTG-TTT--CC-T-ATATCC
gi|16 : -TC-TCTG-TCA--GTAT-AT-TCCT-ACCACAAACAATTTTGCCTG-TGATG-----------------TCTAAAGT-TCATTC--TG----AT-GTGACCC-TATActttgctctttctctctctgtcagtatattcctaccacaaacaattttgcctgtgatgtctaaagttcattctgatgtgaccctatatacagaatgtcttcagattcagaatagtat
gi|16 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctc-ATC--TGAAG-------AC-AT---TC---TGTAT-ATAGG-G-TCACA----TCAG--AATGA-ACTTT-AGtacagaatgtcttcagattcagaatagtat
gi|17 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctctctctgtcagtatattcctaccacaaacaattttgcctgtgatgt----TCAG--CATG--ACTTTAAGTTACC-TA-AGATCATtcagaatagtat
gi|17 : attctgtataaggtcatgtccgcCA------TG-CTGAATCCAGC-A-TT---TA-C--AGTTCCT---TCGAAT-GTCAT----CCAAAAC-AC-TTCAA--GAT-TC-ACTG-TCA--CT-T-AC-TCCT-ACCACC-ATGATTCTGatccagcatttacagttccttcgaatgtcatccaaaacacttcaagattcactgtcacttactcctaccaccatgattctg
gi|18 : attctgtataaggtcatgtccgcatgatcttaggtaacttaaagtC-T-TCTACA-A---A--A----CCAA--CAAACCTTA-TTCTTACA------TG-TTTGATTCAGC-A--T---TA-T--TGCTCAT---TTGACA-GCCATT-ATCCAAAAC-AC-TTT-G--AAT-TC-ACTGTTCA--CT-TGAT-T
gi|19 : TC--TGAAG-------AT-ATTATCT---TGTAA-A---G-GGTCAGG----TAAT--CATTC-ATTTTTGGTGACC-TA-AGGTCATCCAG-TCAAA----TGC-T-TCTACC-AG--A--A----TCAAT-CAAACC-----TCTTACttcgtgctttgtgaatgaggacttgat
gi|2 : TC--TGAAG-------AC-AT---TT---CATGT-AT--G-G-TCACA----TCAG--CATGC-ACTTC-GATGACT-TA-AGATCATCCAA-TCAAA----TGC-T-GCTACG-AG--A--A----CCAAtcttggtgtt
gi|2 : TTCATC-A-TT---AT-C--AGTTCCT---TCAGAT-GTCATT-ATCCGGAAC-AC-TTTGG--GAT-TG-ACTG-TCA--CT-T-AT-TCCT-GTCACTAACGAATTTACCAG-CGACGA---TGAATTGGG-TGGTGTAAAGT-GCATGG--TG----AC-GTGACTC-TATACAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtaaagtgcatggtgacgtgactctatacagaatgtcttcatatctta
gi|2 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAAG-ATA--TGAAG-------AC-AT---TC---TGTAT-A---GAG-TCACG----TCAC--CATGC-ACTTT-aatgtcttcatatctta
gi|20 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtTG-TCACT--AATACCGAG-ATC--TGAAG-------AC-CT---CC---TGTAA-AG--G-G-TCACT----TCAGAACAAGC-ATTa
gi|21 : G-TCGCT--AATACATAG-ATC--CGAAG-------AC-AT---CC---GGTAT-A---GAG-TTACA----TTAA--CATGcaagatctacggcaacatctagaaaaatcgtagatcatact
gi|22 : gatctttgatcctctattataTTTTGCCAG-TGATGA-TTTG-ATTGGT-ATTTCTTAAGT-TCATTC--TG----AT-CTGACCC-TAT
gi|3 : C-AT---CC---ACTAT-A---G-GGTCACA----TTAG--AATTC-ACTTT-TGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-G-TGCACA-AG--CCTA----CCAAT-CAAACCT-A-TCCTTACA------TG-TTGAATTTTGT-A-TC---TGTT--GGTT-CT---TTGGAG-GTCATT-ATTTGAAAT-AC-TTCCG--GAT-TC-ACTG-TCA--GT-T-AA-TTTT-ACCACCAAAAGTTTTACCA----ACAA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--CGATGTAC-GTGACCC-TATACcc
gi|3 : G-ATT--TGAAG-------AC-TT---CA---TGTAT-AG--G-G-TCACGTACATCGG--AATGA-ACTTT------------AGATAAACCAA-TCAAA----Tatgaagtcttcaaatcatcaggatacccaagcacaacaaaagtctggttttga
gi|4 : catccactatagggtcacattagaattcacttttgtgacctaaggtcatccaatcaaatgcgtgcacaagcctaccaatcaaacctatccttacatgttgaattttgtatctgttggttctttggaggtcattatttgaaatacttccggattcactgtcagttaattttaccaccaaaagttttaccaacaCAATATTTTGATA-TCACG--AATACAACA-CTC--TGAAG-------AT-AT---CC---TGTAT-A---G-GATCACG----TCAG--CATAA-ACTTT-GGTGACC-TA-ATGTCATCCAA-TCAAA----CGC-T-CCTACA-AG--A--A----CCAGT-CAAACTT-A-TTCTTCCG------TG-ATGGATTCAGC-A-CT---TAAC--AGTTCTT---GTGGAA-GTCATT-ATCCAGACC-AC-TTTGG--GAT-TT-ACTG-TCA--CT-T-AT-TCCT-ACTACCAACGATTTTGCCAC-AGACGA-TTTA-ATTGGT-TTATCTAAAATAGCATGC--TG----GC-GTGGCCC-AATACatcaggatacccaagcacaacaaaagtctggttttga
gi|4 : GAAG-------GC-AT---CT---TGTATTG---G-G-CCACG----CCAG--CATGCTATTTT------------AGATAAACCAA-TTAAA----Taagatgccttc
gi|5 : caatattttgatatcacgaatacaacactctgaagatatcctgtataggatcacgtcagcataaactttggtgacctaatgtcatccaatcaaacgctcctacaagaaccagtcaaacttattcttccgtgatggattcagcacttaacagttcttgtggaagtcattatccagaccactttgggatttactgtcacttattcctactaccaacgattttgccacagacgGATCCACTCCAGTATTTTGATG-TCACT--AGTACATAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CACGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TTTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTGCA------TG-TTGAATTCAGC-A-AT---TA-T--GGTTCCT---TCGGAA-ATTATC-ATTTGGAAC-AC-TTCTG--GAC-TG-ACCG-TCA--CT-T-AT-TCCT-ACTGCCAATGATTTTGCCAG-TGACGA-TTTG-ATTGGT-TTCTCTAAAGT-GCATGC--TG----AC-GCGACCC-TATTCGG
gi|6 : C-AT---CCATTTGTA--A---G-G-TCACA----TCAG--CATGC-GCTTT-TGTTACCATAGAAACCGTC--A-TCCAA----TGC-T-TCTCCC-AGTAA--A----CCAGTTCAAAATT-A-TTCTTATA------TG-ATGAAT-AAGC---TT---TA-C--TGTTCCT---TCGGAA-TTCGTT-ATCCGGAAC-A----CGG--AAT-TCAACTG-TCACCCT-T-TT-CCTT-ACCAGCAACAATTTTGCCAGCCAACGA-GTTG-----------TC-AA------ATTC--TG----AT-GAGACCC-TATA
gi|6 : gGATGCATTTGGCTATTCTGGTGGTCACT--ATTACAAAA-ATC--TGAAT-------A--AC---CG---TGTAT-ATAGG-G-TCTCA----TCAG--AATtacacggttattcagatttttgtaatagtgaccaccagaatagccaaatgcatcaaa
gi|7 : gcatccatttgtaaggtcacatcagcatgcgcttttgttaccatagaaaccgtcatccaatgcttctcccagtaaaccagttcaaaattattcttatatgatgaataagctttactgttccttcggaattcgttatccggaacacggaattcaactgtcacccttttccttaccagcaacaattttgccagccaacgagttgtcaaC-AT---CC---TGTAT-A---G-GGTCAGG----TCAG--CAT------TT-GATGACC-TC-AAGTCCTCCGA-TCAAA----TGC-T-TCTATA-AG--A--A----CCAAT-CAAACCT-A-TT---ACA------TG-ATAAATTAAGC-A-TG---TA-C--GATAACG---TC---A-GTGATT-ACCCGGAAC-AC-TTCGG--GAC-TG-ACTG-TCA--CA-T-AT-TCCG-ACCGCCAGTGATTTTGCTAG-TGATGA-TTTG-ATTGGT-TTATCTTAAGT-TCATTG--TA----AT-ATGACCC-aaa
gi|7 : TCTGATA-T--------TACAAAG-ATC--TGTAG-------AC-AG---CC---CAAAA-AG--G-G-TCATA----TTAC--AATGA-ACT-----------TA-AGATAAACCAA-TCAAA----Tttttgggctgtctacagatctttgtaatatcagagcagattgaagatctggttttaa
gi|8 : catcctgtatagggtcaggtcagcatttgatgacctcaagtcctccgatcaaatgcttctataagaaccaatcaaacctattacatgataaattaagcatgtacgataacgtcagtgattacccggaacacttcgggactgactgtcacatattccgaccgccagtgattttgctagtgatgAG-ATG--TCAAG-------ACTAT---CA---GCTAT-A---G-GGTCACA----TTAG--AATTC-ACTTT-TGTGACT----AGGTCATCCAAGTCAAA----TGCGC-TGTGCACAG--A--AGCTACCAAT-CAAACCT-AATCCTTAC-------TG-T-GAATTT-GT-A-TC---TG-TTGAGTTCTG---TTGGAGTGTCATT-ATTTGAAAT-AC-TTCGGCAGATCTC-ACTG-T-A--TT-T-AA-TTTT-ACCACCAAAAGTTTTACCA--CAACA----TG-ATTGGTATTATCTAAAGT-TCATTCGATG----TCAGTGACCCTTATACgcagattgaagatctggttttaa
gi|9 : gtacAG-------AT-GT---CC---TGTAT-A---G-GATCATG----TTAG--CATGC-ACTTT-GGTGACC-ataattcttcaat
gi|9 : GG-TTTG-AGTGGT-C-ACC-AAAGT-GCATGC--TA----AC-ATGATCC-TATACAGactcaaacctattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaattttgattggtttatctaaagtgcatgctgatgcgaccctacacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|9 : agatgtc--A----CCACT-CAAACCT-A-TT---ACA------TG-CTGTATTCAGC-A-TT---TA-T--GGTTCCA---TCAGAA-GTCATT-ATCCGAAAC-ACTTTCAG--GAC-TG-ACTC-TCT--AT-T-GT-TCCT-AATGCCAACGATTTTGCCAT-TGACAATTTTG-ATTGGT-TTATCTAAAGT-GCATGC--TG----AT-GCGACCC-TACACtattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaattttgattggtttatctaaagtgcatgctgatgcgaccctacacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|9 : agatgtcctgtataggatcatgttagcatgcactttggtgCTCTGATATTCTGATG-TTGCC--GATACAAAG-ATT--TGAAG-------AC-AT---TT---TGTGT-AG--G-G-TCGCA----TCAG--CATGC-ACTTT------------AGATAAACCAA-TCAAA----aaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
blockSeqs : G G . C CT CAATCCA T TAT ATTT T CAG A G GTACA AA CT AG A G C TTGT G G C TA CT GCTA T T C . A A T CTA TTGA ATG T TA T T CA C A T CC A G A A GCC ATT A A AG G GA ATGT A T
blockSeqs : . G . . . . . . C . TAG A G A . A AA . . G . . . . . . . T . A . . A . . TTG . . T . . . . . . . . . . . GC AT . . G T . . . .
blockSeqs : . A . . . . . . C . TAG . G A . C TG . . . . . . . . . . . . . . . . . . ACA . . A . . . . . . . . . . . GC AT . . T T . . . .
blockSeqs : . G . . . . . . C . G . G G . C A . . . . . . . . . . . . . . . . . . CG . . T . . . . . . . . . . . GT AT . . T T . . . .
blockSeqs : . A . . . . . . C . T . A A . A A . . . . . . . . . . . . . . . . . . CA . . T . . . . . . . . . . . GC AT . . T G . . . .
blockSeqs : . A . . . . . . C . G . G A . C G . . . . . . . . . . . . . . . . . . TA . . T . . . . . . . . . . . GT AT . . G T . . . .
blockSeqs : . A . . . . . . T . T . G G . T G . . . . . . . . . . . . . . . . . . CG . . T . . . . . . . . . . . CA AG . . T T . . . .
blockSeqs : . G . . . . . . T . G . A A . C G . . . . . . . . . . . . . . . . . . TA . . T . . . . . . . . . . . GT AT . . T G . . . .
blockSeqs : . . . . . . . . T . G . . A . A G . . . . . . . . . . . . . . . . . . CG . . C . . . . . . . . . . . GT GT . . G G . . . .
blockSeqs : . . . . . T . G . . A . A A . . . . . . . . . . . . . . . . . . CA . . T . . . . . . . . . . . TT A . . T T . . . .
blockSeqs : . . . . . C . G . . G . C G . . . . . . . . . . . . . . . . . . CA . . T . . . . . . . . . . . C T . . T T . . . .
blockSeqs : . . . . . T . . . . A . C T . . . . . . . . . . . . . . . . . . TT . . T . . . . . . . . . . . . A . . G T . . . .
blockSeqs : . . . . . T . . . . G . C G . . . . . . . . . . . . . . . . . . CA . . T . . . . . . . . . . . . . . . G G . . . .
blockSeqs : . . . . . G . . . . T . C G . . . . . . . . . . . . . . . . . . TG . . . . . . . . . . . . . . . . . . G . . . .
blockSeqs : . . . . A . . . . A . C T . . . . . . . . . . . . . . . . . . CT . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . A . A G . . . . . . . . . . . CG . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . G . A T . . . . TG . . . . . . . . . .
blockSeqs : . . . T . . . . G . C G . . . .
blockSeqs : . . . C . . . . G . C . . . . .
blockSeqs : . . . T . . . . A . A . . . . .
blockSeqs : . . . T . . . . A . C . . .
blockSeqs : . . . C . . . . G . C . . .
blockSeqs : . . G . . . . A . C .
blockSeqs : . . T . . . . A . .
blockSeqs : . . T . . . . G . .
blockSeqs : . A .
blockSeqs : .
blockSeqCons : ** *** ******
originalCons : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-A-TT---TA-C--GGTTCCT---TCGGAA-GTCATT-ATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AC-GTGACCC-TATACGG
finalCons : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-A-TT---TA-C--GGTTCCT---TCGGAA-GTCATT-ATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AC-GTGACCC-TATACGG
Alignments
lowQualScore : 222 1 11
lowQualScore : 0 4 1 55 2 33 5555555 1 222 4444 1 111 3 1 33333 22 11 00 0 1 1 3 4444 2 2 2 33 33 5555 5 2 5 777777 2 4 2 444 55555 333 2 33 2 2 0 33 2 2 2 33 2 2 2 2 666 555 2 2 00 44 1 33 5555 2 2
lowQualScore : . . . .. . .. ....... . ... .... . ... . . ..... .. .. .. . . . . .... . . . .. .. .... . . . ...... . . . ... ..... ... . .. . . . .. . . . .. . . . . ... ... . . .. .. . .. .... . .
lowQualScore : 8 0 4 55 7 11 7777777 5 777 8888 5 999 1 9 44444 00 88 00 9 7 7 8 0000 4 4 5 44 22 0000 0 5 0 222222 5 7 4 111 99999 999 2 66 4 4 6 22 2 2 2 11 2 2 2 5 444 111 7 7 88 99 6 77 7777 7 7
consensus : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-A-TT---TA-C--GGTTCCT---TCGGAA-GTCATT-ATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AC-GTGACCC-TATACGG
Reference ( family-1054 ) : GATCCACTCCGATATTCTGATG-TCGCT--AATACAAAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTACA------TG-TTGAATTCAGC-A-TT---TA-C--GGTTCCT---TCGGAA-GTCATT-ATCCGGAAC-AC-TTCGG--GAT-TC-ACTG-TCA--CT-T-AT-TCCT-ACCGCCAACGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AC-GTGACCC-TATACGG
gi|1 : GATTCACTCTGATATTCTGATG-TCTCTGGAATACAAAG-ATC--TGAAA-------AC-AT---CC---TGTAT-AA--G-G-TCACA----CCAG--CATGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCAACA-TG--A--A----CCAAT-CAAACCC-A-CTCTTACATGTACATG-TTGAATTCAGC-A-TT---TA-A--AGTTCCT---TCATTA-GTCATT-ATTCAGAAC-AC-TTCAG--GAT-TC-ACTG-TTG--CA-T-AT-TCCT-ACCACCAACAATTTAGACAG-CAACAA-TTTG-ATTGGT-TTCTCTAAAGT-TCATCA--TG----AT-GTGACCC-TATGCGG
gi|1 : ctatcatcttatttAAG-ATC--TGCAG-------AC-AT---TC---CGCAT-AG--G-G-TCACA----TCAT--GATGA-ACTTT-AGAGA----A-A------CCAA-TCAAATTGTTGC-TGTCTAaatgtctgcagatctt
gi|10 : ctatcatcttatttgattcactctgatattctgatgtctctggaatacaaagatctgaaaacatcctgtataaggtcacaccagcatgcactttggtgacctaaggtcatccaatcaaatgcttcaacatgaaccaatcaaacccactcttacatgtacatgttgaattcagcatttaaagttccttcattagtcattattcagaacacttcaggattcactgttgcatattcctaccaccaacaattGATCCACTCCGATATTTTGTTG-TCGCT------------------------------------------CGTAT-AT--G-G-TCACA----TCAG--CATGC-ATTTT-AGTGACG-TA-AGGTTATCCAA-TCAAA----TAC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-TCCTTACT------TG-TTGAATGCAGC-A-AG---AA-C--GATTCTT---TCGGAA-GTC----ATCCGGAAC-AT-TTCGG--GAT-TG-ACTG-TCA--CT-C-AT-TCCT-ACCGCCAACCATTTTGCTAG-CGA-AA---------------ATCTGAAGT-GCATGC--TG----GC-GTGATTT-TATACGG
gi|11 : ttAG-------AC-AT---CC---CGTAT-A---G-GGTCACG----TCAG--CATAC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TCTACA-AG--A--A----CCAAT-CAAACCT-A-------CA------AG-TTTAAGTCAGC-A-TT---TA-C--AGTTCCT---TCGGAT-GTCATT-AACCATGAC-AC-TTCGG--GAT-TT-ACGT-TCA--CT-T-TT-TCTT-ACTGTCATCGATTTTGCCAG-CGACGA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--TG----AT-GTGACCC-TACACGGgat
gi|11 : TC--TAAAG-------AC-AT---CC---CGTGT-AG--G-G-TCACA----TCAG--AATGA-ACTTT------------AGATAAACCAA-TCAAA----Tgatgtctttaga
gi|12 : agacatcccgtatagggtcacgtcagcatacactttggtgacctaaggtcatccaatcaaatgcttctacaagaaccaatcaaacctacaagtttaagtcagcatttacagttccttcggatgtcattaaccatgacacttcgggatttacgttcactttttcttactgtcatcgattttgccagcgacgGATCC-CTGCAATATTATGATG-TTGCT--AACACAAAGCATTCTTGAAGCAATCCAAC-AT---CC---CAT------------CATA----TCAG--CATGC-ACTTT-GGTGA-C-TA-AGGTCATCCAACTCAAA----TGC-T-TGTATA-AG--A--A----CCAAT-CAAACCT-ACTCCTTGAA------TGATTGAATTCAGCAA-TTCTATA-T--AGTTGTTATGTAGAGA-ATCATTAATCCAGA
gi|13 : ctacatctt-TTACG----TCAA--CATAT-ACTTT-GGTGACC-TA-AGGACATCCAA-TCAAA----TGC-T-T--ACA--------------CAATTC---CCT-A-TTCTGACA------TA-ATAAATTCAGC-T-TT---TA-C--GGTTTCT---TCAGAA-GTCATA-ATTCAAAAC-AC-TTCAG--GAA-TC-ACTG-TCA--CT-T-AT-TCCT-GCCACTAACGATTTTGACA
gi|14 : caatgtttcaatttacaataacaatatccactgaaAG-------AC-AT---CT---TGTGT-A---G-GGTTACA----TCAG--CATGC-ACTTT-GGTGACC-TT-AGGTCATCCAA-TCAAA----AGC-T-TCTACA-AG--A--A----CCAAT-CAAATCT-A-TTTTTACA------TG-TTGAATTAAGCAA-TA---GA-T--AGTT-CT---TCAG-A-GTCATT-ACTCAGAAC-TC-TCTGG--GAT-TC-ACAT-T----CC-T-AT-TCCTAACCACCAACAATTT
gi|15 : A-AGGTCATCCAA-TCAAA----TGC-G-TCTACA-AG--A--A----CCAGT-------T-A-TTCTTGTA------TG-TTGAATTCAGC-ATTT---TA-C--GGACCCT---TCGAAA-GT-------------T-AC-TTCAG--GAT-TC-ACTG-TCA--CT-T-AT-TTTT-ACCGCCAACAAT----------------TTTG-ATTAGT-TTATCTAAAGT-TCACTC--TG----AT-GTGACCC-TGTA
gi|15 : cGATG-------AC-AT---CC---TGTAT-ACAGG-G-TCACA----TCAG--AGTGA-ACTTTAGATAAAC-TA-Atacaggatgtcatc
gi|16 : caaggtcatccaatcaaatgcgtctacaagaaccagttattcttgtatgttgaattcagcattttacggacccttcgaaagttacttcaggattcactgtcacttatttttaccgccaacaattttgaA-C--AGTTCCT---T----A-GT-AT--ATC-GGAATTGC-TTTGG--GAT-TC-ACTG-TTT--CC-T-ATATCC
gi|16 : -TC-TCTG-TCA--GTAT-AT-TCCT-ACCACAAACAATTTTGCCTG-TGATG-----------------TCTAAAGT-TCATTC--TG----AT-GTGACCC-TATActttgctctttctctctctgtcagtatattcctaccacaaacaattttgcctgtgatgtctaaagttcattctgatgtgaccctatatacagaatgtcttcagattcagaatagtat
gi|16 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctc-ATC--TGAAG-------AC-AT---TC---TGTAT-ATAGG-G-TCACA----TCAG--AATGA-ACTTT-AGtacagaatgtcttcagattcagaatagtat
gi|17 : acagttccttagtatatcggaattgctttgggattcactgtttcctatatccctttgctctttctctctctgtcagtatattcctaccacaaacaattttgcctgtgatgt----TCAG--CATG--ACTTTAAGTTACC-TA-AGATCATtcagaatagtat
gi|17 : attctgtataaggtcatgtccgcCA------TG-CTGAATCCAGC-A-TT---TA-C--AGTTCCT---TCGAAT-GTCAT----CCAAAAC-AC-TTCAA--GAT-TC-ACTG-TCA--CT-T-AC-TCCT-ACCACC-ATGATTCTGatccagcatttacagttccttcgaatgtcatccaaaacacttcaagattcactgtcacttactcctaccaccatgattctg
gi|18 : attctgtataaggtcatgtccgcatgatcttaggtaacttaaagtC-T-TCTACA-A---A--A----CCAA--CAAACCTTA-TTCTTACA------TG-TTTGATTCAGC-A--T---TA-T--TGCTCAT---TTGACA-GCCATT-ATCCAAAAC-AC-TTT-G--AAT-TC-ACTGTTCA--CT-TGAT-T
gi|19 : TC--TGAAG-------AT-ATTATCT---TGTAA-A---G-GGTCAGG----TAAT--CATTC-ATTTTTGGTGACC-TA-AGGTCATCCAG-TCAAA----TGC-T-TCTACC-AG--A--A----TCAAT-CAAACC-----TCTTACttcgtgctttgtgaatgaggacttgat
gi|2 : TC--TGAAG-------AC-AT---TT---CATGT-AT--G-G-TCACA----TCAG--CATGC-ACTTC-GATGACT-TA-AGATCATCCAA-TCAAA----TGC-T-GCTACG-AG--A--A----CCAAtcttggtgtt
gi|2 : TTCATC-A-TT---AT-C--AGTTCCT---TCAGAT-GTCATT-ATCCGGAAC-AC-TTTGG--GAT-TG-ACTG-TCA--CT-T-AT-TCCT-GTCACTAACGAATTTACCAG-CGACGA---TGAATTGGG-TGGTGTAAAGT-GCATGG--TG----AC-GTGACTC-TATACAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtaaagtgcatggtgacgtgactctatacagaatgtcttcatatctta
gi|2 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAAG-ATA--TGAAG-------AC-AT---TC---TGTAT-A---GAG-TCACG----TCAC--CATGC-ACTTT-aatgtcttcatatctta
gi|20 : tctgaagacatttcatgtatggtcacatcagcatgcacttcgatgacttaagatcatccaatcaaatgctgctacgagaaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatcattatcagttccttcagatgtcattatccggaacactttgggattgactgtcacttattcctgtcactaacgaatttaccagcgacgatgaattgggtggtgtTG-TCACT--AATACCGAG-ATC--TGAAG-------AC-CT---CC---TGTAA-AG--G-G-TCACT----TCAGAACAAGC-ATTa
gi|21 : G-TCGCT--AATACATAG-ATC--CGAAG-------AC-AT---CC---GGTAT-A---GAG-TTACA----TTAA--CATGcaagatctacggcaacatctagaaaaatcgtagatcatact
gi|22 : gatctttgatcctctattataTTTTGCCAG-TGATGA-TTTG-ATTGGT-ATTTCTTAAGT-TCATTC--TG----AT-CTGACCC-TAT
gi|3 : C-AT---CC---ACTAT-A---G-GGTCACA----TTAG--AATTC-ACTTT-TGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-G-TGCACA-AG--CCTA----CCAAT-CAAACCT-A-TCCTTACA------TG-TTGAATTTTGT-A-TC---TGTT--GGTT-CT---TTGGAG-GTCATT-ATTTGAAAT-AC-TTCCG--GAT-TC-ACTG-TCA--GT-T-AA-TTTT-ACCACCAAAAGTTTTACCA----ACAA-TTTG-ATTGGT-TTATCTAAAGT-TCATTC--CGATGTAC-GTGACCC-TATACcc
gi|3 : G-ATT--TGAAG-------AC-TT---CA---TGTAT-AG--G-G-TCACGTACATCGG--AATGA-ACTTT------------AGATAAACCAA-TCAAA----Tatgaagtcttcaaatcatcaggatacccaagcacaacaaaagtctggttttga
gi|4 : catccactatagggtcacattagaattcacttttgtgacctaaggtcatccaatcaaatgcgtgcacaagcctaccaatcaaacctatccttacatgttgaattttgtatctgttggttctttggaggtcattatttgaaatacttccggattcactgtcagttaattttaccaccaaaagttttaccaacaCAATATTTTGATA-TCACG--AATACAACA-CTC--TGAAG-------AT-AT---CC---TGTAT-A---G-GATCACG----TCAG--CATAA-ACTTT-GGTGACC-TA-ATGTCATCCAA-TCAAA----CGC-T-CCTACA-AG--A--A----CCAGT-CAAACTT-A-TTCTTCCG------TG-ATGGATTCAGC-A-CT---TAAC--AGTTCTT---GTGGAA-GTCATT-ATCCAGACC-AC-TTTGG--GAT-TT-ACTG-TCA--CT-T-AT-TCCT-ACTACCAACGATTTTGCCAC-AGACGA-TTTA-ATTGGT-TTATCTAAAATAGCATGC--TG----GC-GTGGCCC-AATACatcaggatacccaagcacaacaaaagtctggttttga
gi|4 : GAAG-------GC-AT---CT---TGTATTG---G-G-CCACG----CCAG--CATGCTATTTT------------AGATAAACCAA-TTAAA----Taagatgccttc
gi|5 : caatattttgatatcacgaatacaacactctgaagatatcctgtataggatcacgtcagcataaactttggtgacctaatgtcatccaatcaaacgctcctacaagaaccagtcaaacttattcttccgtgatggattcagcacttaacagttcttgtggaagtcattatccagaccactttgggatttactgtcacttattcctactaccaacgattttgccacagacgGATCCACTCCAGTATTTTGATG-TCACT--AGTACATAG-ATC--TGAAG-------AC-AT---CC---CGTAT-A---G-G-TCACG----TCAG--CACGC-ACTTT-GGTGACC-TA-AGGTCATCCAA-TCAAA----TGC-T-TTTACA-AG--A--A----CCAAT-CAAACCT-A-TTCTTGCA------TG-TTGAATTCAGC-A-AT---TA-T--GGTTCCT---TCGGAA-ATTATC-ATTTGGAAC-AC-TTCTG--GAC-TG-ACCG-TCA--CT-T-AT-TCCT-ACTGCCAATGATTTTGCCAG-TGACGA-TTTG-ATTGGT-TTCTCTAAAGT-GCATGC--TG----AC-GCGACCC-TATTCGG
gi|6 : C-AT---CCATTTGTA--A---G-G-TCACA----TCAG--CATGC-GCTTT-TGTTACCATAGAAACCGTC--A-TCCAA----TGC-T-TCTCCC-AGTAA--A----CCAGTTCAAAATT-A-TTCTTATA------TG-ATGAAT-AAGC---TT---TA-C--TGTTCCT---TCGGAA-TTCGTT-ATCCGGAAC-A----CGG--AAT-TCAACTG-TCACCCT-T-TT-CCTT-ACCAGCAACAATTTTGCCAGCCAACGA-GTTG-----------TC-AA------ATTC--TG----AT-GAGACCC-TATA
gi|6 : gGATGCATTTGGCTATTCTGGTGGTCACT--ATTACAAAA-ATC--TGAAT-------A--AC---CG---TGTAT-ATAGG-G-TCTCA----TCAG--AATtacacggttattcagatttttgtaatagtgaccaccagaatagccaaatgcatcaaa
gi|7 : gcatccatttgtaaggtcacatcagcatgcgcttttgttaccatagaaaccgtcatccaatgcttctcccagtaaaccagttcaaaattattcttatatgatgaataagctttactgttccttcggaattcgttatccggaacacggaattcaactgtcacccttttccttaccagcaacaattttgccagccaacgagttgtcaaC-AT---CC---TGTAT-A---G-GGTCAGG----TCAG--CAT------TT-GATGACC-TC-AAGTCCTCCGA-TCAAA----TGC-T-TCTATA-AG--A--A----CCAAT-CAAACCT-A-TT---ACA------TG-ATAAATTAAGC-A-TG---TA-C--GATAACG---TC---A-GTGATT-ACCCGGAAC-AC-TTCGG--GAC-TG-ACTG-TCA--CA-T-AT-TCCG-ACCGCCAGTGATTTTGCTAG-TGATGA-TTTG-ATTGGT-TTATCTTAAGT-TCATTG--TA----AT-ATGACCC-aaa
gi|7 : TCTGATA-T--------TACAAAG-ATC--TGTAG-------AC-AG---CC---CAAAA-AG--G-G-TCATA----TTAC--AATGA-ACT-----------TA-AGATAAACCAA-TCAAA----Tttttgggctgtctacagatctttgtaatatcagagcagattgaagatctggttttaa
gi|8 : catcctgtatagggtcaggtcagcatttgatgacctcaagtcctccgatcaaatgcttctataagaaccaatcaaacctattacatgataaattaagcatgtacgataacgtcagtgattacccggaacacttcgggactgactgtcacatattccgaccgccagtgattttgctagtgatgAG-ATG--TCAAG-------ACTAT---CA---GCTAT-A---G-GGTCACA----TTAG--AATTC-ACTTT-TGTGACT----AGGTCATCCAAGTCAAA----TGCGC-TGTGCACAG--A--AGCTACCAAT-CAAACCT-AATCCTTAC-------TG-T-GAATTT-GT-A-TC---TG-TTGAGTTCTG---TTGGAGTGTCATT-ATTTGAAAT-AC-TTCGGCAGATCTC-ACTG-T-A--TT-T-AA-TTTT-ACCACCAAAAGTTTTACCA--CAACA----TG-ATTGGTATTATCTAAAGT-TCATTCGATG----TCAGTGACCCTTATACgcagattgaagatctggttttaa
gi|9 : gtacAG-------AT-GT---CC---TGTAT-A---G-GATCATG----TTAG--CATGC-ACTTT-GGTGACC-ataattcttcaat
gi|9 : GG-TTTG-AGTGGT-C-ACC-AAAGT-GCATGC--TA----AC-ATGATCC-TATACAGactcaaacctattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaattttgattggtttatctaaagtgcatgctgatgcgaccctacacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|9 : agatgtc--A----CCACT-CAAACCT-A-TT---ACA------TG-CTGTATTCAGC-A-TT---TA-T--GGTTCCA---TCAGAA-GTCATT-ATCCGAAAC-ACTTTCAG--GAC-TG-ACTC-TCT--AT-T-GT-TCCT-AATGCCAACGATTTTGCCAT-TGACAATTTTG-ATTGGT-TTATCTAAAGT-GCATGC--TG----AT-GCGACCC-TACACtattacatgctgtattcagcatttatggttccatcagaagtcattatccgaaacactttcaggactgactctctattgttcctaatgccaacgattttgccattgacaattttgattggtttatctaaagtgcatgctgatgcgaccctacacaaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata
gi|9 : agatgtcctgtataggatcatgttagcatgcactttggtgCTCTGATATTCTGATG-TTGCC--GATACAAAG-ATT--TGAAG-------AC-AT---TT---TGTGT-AG--G-G-TCGCA----TCAG--CATGC-ACTTT------------AGATAAACCAA-TCAAA----aaaatgtcttcaaatctttgtatcggcaacatcagaatatcagagcagggcaaata