lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 1 5555555555555555555 1 2222 22222 11 11111 777777777777777777777777777 33333333333333 11 1111111111 1 11 2222222222 111 111 222 77777777777777777777777777777777777777777777777777777777777777 11 22222222222 1111 111111 11111 11 111 00000000000000000000000000000000000000000000000000000000000000000 33333333333333333 2222222 22222 111 111111 111 111 99999999999999999999999999999999999999999 2222222222 22222222222 111 111 33333333333333 111 1 66666666666666666666666666666666666666666666 5555555555 111 11111 1111 44444444444444444444444444444 111 11 777777777777777777777777777777777777 1111111111111111 333333333333333333 1111111 333333333 111
lowQualScore : 4 7 5555555 3 2222222222222222222 0 6 3 6666 66666 55 99999 333333333333333333333333333 0 8 7 33333333333333 11 7 0000000000 1 6 6 6 55 55 3 4 3 66 0 6 3 9999999999 444 6 1 555 2 2 111 1 8 88888888888888888888888888888888888888888888888888888888888888 0 00 2 1 8 5 1 44444444444 0 66 3 0000 0 0 0 444444 0 22222 00 2 4 4 3 5 5 333 5 99999999999999999999999999999999999999999999999999999999999999999 55 4 66 77777777777777777 5 66 55 5555555 5 5 5 5 1 88 5 9999 11111 222 444444 6 5 999999 2 222 222 77777777777777777777777777777777777777777 3 3 8 1 1 3 6 6 777 7777777777 6 77777777777 111 111 99 00000000000000 111 6 1 6 2 6 77777777777777777777777777777777777777777777 99 2 1 4 3333333333 3 5 11 333 4 4 4 7 77777 3 77 66 3 44 6 6 66 3 2 2 0 5 5 1 33 2 1111 11111111111111111111111111111 333 33 2 0 1 2 2 88 2 33 4 2 7 2 444 333 5 22 33 333333333333333333333333333333333333 8888888888888888 2 555 0 777777777777777777 1111111 3 2 5 555555555 000 5 77
lowQualScore : . . ....... . ................... . . . .... ..... .. ..... ........................... . . . .............. .. . .......... . . . . .. .. . . . .. . . . .......... ... . . ... . . ... . . .............................................................. . .. . . . . . ........... . .. . .... . . . ...... . ..... .. . . . . . . ... . ................................................................. .. . .. ................. . .. .. ....... . . . . . .. . .... ..... ... ...... . . ...... . ... ... ......................................... . . . . . . . . ... .......... . ........... ... ... .. .............. ... . . . . . ............................................ .. . . . .......... . . .. ... . . . . ..... . .. .. . .. . . .. . . . . . . . .. . .... ............................. ... .. . . . . . .. . .. . . . . ... ... . .. .. .................................... ................ . ... . .................. ....... . . . ......... ... . ..
lowQualScore : 0 3 0000000 3 3333333333333333333 7 7 3 3333 77777 77 33333 777777777777777777777777777 7 3 3 33333333333333 33 3 3333333333 0 0 7 7 00 77 7 7 2 88 8 5 8 4444444444 000 4 4 222 8 8 888 4 0 99999999999999999999999999999999999999999999999999999999999999 1 00 7 7 4 1 9 33333333333 6 11 7 0000 7 9 9 000000 8 33333 66 8 4 4 4 0 0 222 0 88888888888888888888888888888888888888888888888888888888888888888 44 4 99 55555555555555555 0 99 44 4444444 4 0 0 0 4 44 0 0000 11111 777 999999 3 7 777777 5 222 444 88888888888888888888888888888888888888888 8 8 0 0 0 5 7 7 555 7777777777 7 88888888888 777 777 22 55555555555555 777 7 0 7 0 7 88888888888888888888888888888888888888888888 22 5 8 0 6666666666 3 7 55 777 0 0 8 8 22222 1 33 77 1 22 2 4 88 3 7 9 6 7 0 7 99 9 3333 99999999999999999999999999999 111 44 7 3 2 7 7 22 5 44 0 5 5 3 999 999 7 88 66 666666666666666666666666666666666666 7777777777777777 9 777 4 666666666666666666 6666666 1 9 8 444444444 000 7 77
consensus : TAACCTTNCTAGTGAAAGTCGA---GGTTTT-AGAAA-GNNA-TAT---TCTA-N-TATAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-TAA-ATA------T-GACAACTGT--TAA-AAAGAGAAATTATTTTGCGC-TTCG-TTGA---TTTTAAGCAGGCTTTTGACAC-GTCTGT-GAAATGGTCTGTGGTACAAGNTA-TNAANAATGGTATTAACGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-A-ATTAAATC--NATG-GTAT-CATG--AAT-GATNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGAGTCCGNCAAGGNGAAAA---------TCTGT--CTCCTCT-TTTGTTCTC-AC-TNTATATNA---ATGAT--TTNGAAG-A-ATTTCTT-GCT-GG-TAAAAA-TG-T-AT-GT-----GGNCTTTC----CGTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-ATTT--TT----A-CTT---TTTC-TAAA-A--CTTTTT-AT-NCT--NTTNT-ATG-CTG-ACGATAC-TGTTA-T--T-AT-T--TCAGAANCNGCTGACG--G-TTTAC-AGCA--TGCNCTCAATGAGTT--TCA-------TT-----CA---------------TA--------ATGTCAATG-TTGAAAAAACAAAAATTATGG-TTTT-CT-C-AAAAGGTCC-ATN-T-CCA-AAAATG--------T-ATTTT---ACTTT---AA--CGG--TA----AA----GTTA---T-TGAAACCGTGAAAG-ANTT-TA-------------A-AT--A-------------TTC--------TCCA--GGTCNGGNTCNTTT----------AAAACATTTNTCTGAACAAG-NCC-AG-AAAGCNATGTATGGNGTTATAAGA-A--AAAT-NAGAC-AA--TTTAA-TTTACCAGTN-G-ANT-GTCAGCTNGATCTGT--TTG-ATA----AAGTTGTATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTG-AAATAT-GGGG-TTACG-AAA--ATC-T-CGATATTATTG--AG-CGTA-TCAACTT-NAATTT----------TTT---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T---TAT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
Reference ( gi|4 ) : TAACCTTATTAGTGAAAGTCAAACAGGTTTT-AGAAA-GGGG-TAT---TCTA-C-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTTTTTTGTGCCTTCA-TTTA---TTTTAAACAGGCTTTTGACACTGTCTATTGAAATGGGCTGTGGTACAAATTGGTGAAAAATGGTATTAATGGCAAATGTTTTACATTCAT--TAA---AAATATGTATGACGG-A-GTTGAGTC--TATG-GTATCCATG--AAT-GACCAG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGTCAAGGTGAAAA---------TGTAT--CTCCTCT-TTTGTTCTC-AC-TGTATATAA---ATGAT--TTAGAAG-A-ATTTCTT-GCT-GG-TAAAAA-TG-T-AT-GT-----GGACTTTC----TGTTA-----CTC-CAGTACTCCAAG-CA----A-TAAC-GAAAATA-A-ATTT--TT----A-CTT---TTTC-TAAA-A--CTTTTT-AT-AGT--ATTCT-ATG-CTG-ACGATAC-TGTTA-T--T-AT-T--TCAGAATCAGCTGACG--G-TTTGC-AGCA--TGCCCTCAATGAGTT--TCA-------TT-----CA---------------TA--------ATGTCAATG-TTGAAAAAACAAAAATTATGG-TTTT-CT-C-AAAAGGTCC-ATCTT-CCA-AAAATG--------T-ATTTT---ACTTT---AA--TGG--TA----AA----GTTA---T-TGAAACCGTGAAAG-ACTT-TA-------------A-AT--A-------------TTC--------TCCA--GGTCCGGATCATTT----------AAAACATTTATCTGAACAAG-GTC-AA-AAAGCCATGTATGGCGTGATACGA-A--AAAT-TAGAC-AA--TTTAA-TTTACCAGTA-G-AAT-GTCAGCTAGACCTGT--TTG-ATA----AAGTTGTGTT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTG-AAGTAT-GGGG-TTTCG-AAA--ATC-T-CGATATTATTG--AG-CGTA-TCAACTT-CAATTT----------TTT---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T---TAT--G-GTCTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
gi|3 : TAACCTTATTAGTGAA-GTCAACCAGGTTTTTAGAAAAGGGG-TAT---TCTAAC-TACAGA-AATA-TATTA--A-TTT-G---CATTTTCCTAACAA-ATA------TTGACAACTGT-TTAACAAAAAGAAACTTTTT-GTGCCTTCAATTTA---TTTTA--C-GGCTTTTGACACTGTCTATTGAAATGGGCTGTG-TACAAATTG-TGAAAA-TGGTATTAATGGCAAATGTTTTACATTCCT--TAA---AAATATGTTTGACGG-A-GTTGAGTC--TATG-GTATCCATG--AATCGACCAGCTCA----T---------C---TGAA-T---TTTC-------AATTGC-ATGT--GGGGTCCCGCAAGGTG-AAA---------TGTAT--CT-CTCT-TTTGTTCTC-ACTTGTATAT-A---ATGAT--TTCGAAG-AGATTTCTTGGCT-GG-T-AAAA-TG-TAAT-GT-----GGACTTTCT---TGTTA-----CTC-CAGTAACTCAAG-CA----ACTAAC-G-AAATA-A-ATTT--TT----A-C-T---TTTC-TAAA-A--CTTTTT-AT-AGT--ATTCT-ATG-CTG-ACGATACTTTTTA-T--TAAT-T--TCAG-ATCAG-TGAC---G-TTTGCAAGCA--TG-CCTCAAT-AGTT--TCA-------TT-----CA---------------TA--------ATGTC-ATG-TTGAAAAAACAAAAATTATGG-TTTTCCT-C-AAAAGGTCC-ATCTT-CCA-AAAATG--------TAATTTT---ACTTT---AA--TGG--TA----CA----GTTA---TCTGAAACCGTGAAAG-A-TT-TA-------------A-AT--A-------------TTC--------T-CA--GGTCCGGATCATTTA---------AAAACATTTCTCTGAAC-AG-GTCAAA-AAAGCCATGTATGGCGTGATACGA-A--AAAT-TAGACAAA--TTTAATTTTACCAGTA-G-AAT-GTCAGCTAG-CCTGT--TTG-ATA----AAGTTGT-TT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTG-AAGTAT-GGGGTTTTCG-AAA--ATCAT-CGATATTATTG--AGCCGTA-TCAACTT-CAATTT----------TTT---------------A---A---TTTA---------AGG----AAG-T--AGCACTC---A-----AAA--T---TAT--G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-T-TA-TTGTATAAT-AT-GTAACTGTT
gi|15 : AACCTTTCTAATGAAAG--------GTTTT-AGAAA-AAAAATATGCATCTA-TATATAGACCATA-TTTCA--GCTTT-G---CATTTTTTTA-TAGCATACTCTTCT-TACT-CTGTAGTAA-AAAGAGCAATCATGTTGTG---TTG-TTGAAGATTTTAAGCAGGGTTTTGATACAGCCTGGAGAAATGATCTTTGGTATAAGCTACTAGATAATGGGATTAAGGGGAAATGTTATAC-TT--T--TAAGGCAAATGTTTATAAAGG-A-ATCAAATC--TAAG-ATAAGTATA--AAT-GGTGTA-TCA----T---------CAGATTAATT---CTT----------TGGTAATTTC-GGAGTTCACGACGGTG-AAA---------TTTAT--CGCC-CT--------TC-AC-TCTATATAGTTTATAGT--TTGGAAG-A-GTttaca
gi|2 : tcAGTCGAGGTGGTTTT-AGGAA-GCTA-TAT---G--A-A-CATAGACAAAAATATTACAATTTTCGTTTCATTTT--TA-TGA-ACA------A-GAAAAC-------------AAAAATTAGTTTGCGCATTAG-TAGA---TTTCAAACAAGC----------GTATGT---AATGGTTTGTGGAGCAGGGTAGCTAAGAATCGTATAAACTGTAAATGATT---GTTTGTGTCAA---AAATATGTAC-ACGGTA-ATTAAATAAAGATA-GTAT----G--GAT-GGTGTA-TCT----T---------C---TGA-TT---TGTC-------AGTTGTGATGTA-GGTGTGCGGCAAGGCAAAAA---------TCTGT--C-CCTAA-TGTATTCTT-TT-TCGATATTA---ATAAC--CCGGCC--A-ATATCT--GTT-AG---AAAA-CG-T-AT----------ACCT-A----TGTTA-----C-A-AAGTATTACA-G-AATCTTA-TAATAGAGGATG-G-AATT--TT----A-TGT---ATT--TAAA-A--CTCTGT-GTTCCT--TTTTT-ATG-CCG-TTCATAC-TGTCA-T--T-CT-G--ACAGAAACTCCTGATATAA-TTTAC-AGAA--TACTTT----GA-TT--ATA-------TTGTGAACAA--------------TAGAAAAGAAACGCCGATG-TGGGTAAATCAAAAAT-ATAG-TGTT-TT-A-GAAAGGCCCAATGGT-A-A-AAAAT---------C-ATTTTCACACGTCCTAAA--CAGAATACAACAACATTGTCA---T-AGAAAATGTAAAAT-AATT-TG-------------ATACCCA-------------TTCATTGTGTTTCTC--GCTCAGGTTCTTTC----------TACATATCTGT--GAACCAG-CAC-AG-AAAGCAATGTTCGGAGCTATTAGA-A--AAAC-AAGAC-AA--CCTAA-TTTACCTATC-G-ACT-ATCAGTTTGATTTAT--GTG-ATA----AAGTTGTA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTG-AAATAT-GGGT-TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGTT-TTGAATT---ATAT----------TTG---------------A---AC--TTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T---TAT-------TATGGAGAAACCGAT-C
gi|18 : AATGATA--GATGGAAAATGTTTCAAGGTCAT--AAA---AAATCTTTACAATGG-T-ATTAAATC--AAAGAGTGT-CATGTAGAT--ATTGG-TCAATATT---------C---AGACTTCTGTTTC-------CA-TGTAACGTC-GCAGTTAGACAAGGGGAAAA---------CCTGT--CACCTTTCTTTGTTGGC-AG-TATATTTGA---ATGATGCTTTGAAGAA-ATTTACT-GTT-TT-TAATAA-TG------GTTCAACGGTCTTTC----AAT-------CTT----TATTGTGAG-AA----A-TTAG-GAAAATG-A-ATaattatgttcatactaaaactgtttcataatcccaggtccaaaaaactaaattttgttcattttataaatctattt
gi|6 : AAT-TTTTA--TTTAT---AA---AAATATGTATGTTGG-GCGTAAAATC---ATG-TTATAAACGG-AAT-GAATAGGTTA----TGTCCGTGTGT---TGGGTT---TTTTTTTTTTTACGTGCAATGTG-GGAGTAAGGCAAGGGGAGAA---------TTTAT--CTTCCTT-TCTGTTTTC-AT-TATACATTA---ATGAC--CTTGAAA-C-ATTT-TT-ACA-AG--AGAAA-GA-G-ATAGTC----GGGCTT-CGAAATGTT----------------TCTGAGTCA----A-T--T-GAAAA-A-G-ACTTAATG----A--TT---TACC-TGAA-A--CTGTTA-AT-CCT--ATTGT-ATA-CTG-ATGGCA---GTTA-T----AT-TA-GCTGAATCCGCTGAAG--A-TTTAC-AACA--GGCGTTAAATAAATTCTTCACATATTGTT-----CAGAGTGGAAATTGAATTA--------ATATTAATA-TTGAAAAAACCAAAGTTATGA-TTTT-TTTC-AAAGGGTCCTATAAT-GAA-GAAATG--------T---TTT---ATTAC---AA--TGG--AA----AT----ATTA---T-TGAGAATGTTAAGG-AATT-CA-------------A-AT--ACTTAAGCATATTATTT--------TCTA--GATCAGGCTCTTTTTACAAAGCCAAAAACATCTCTGTGAACAAG-CCC-AG-AAAGCTATGTATGGTGTTATAAGG-A--AAAT-CAGAC-AA--TTTAA-TTTACCAATT-A-AAT-GTCAACTTGATCTGT--TTG-ACA----AAGTCAT-TT--TAC--C----TGTATTA--A--CTTAT-G-G-GTACG-AAATTT-GGGG-ATACG-AAA--ACT-TACAA-ATTATgaatgtttatttaagattgtttgtgct
gi|5 : T---TTTC-------A-TTGCAATGTCCGGGGTCCGTCAAG-TGAAAAAAAAAAAAGTGTTTTTCTCCTCT-TTTGTTCTCGAC-TGTA-ATAA---ATGAT--TTAGAAG-A-ATTTCTT-GCT-GG-TAAAAAATG-T-AT-GT-----GGACTTTC----TGTTA-----CTCTCAGTACTCCAAG-CA----A-TAAC-GAAA-TA-A-ATTT--TT----AACTT---TTTC-TAAG-AAGCTTTTTGAT-AGCTCATTCTTATGGCTGGACGATAA--GTTA-T--T-ATCT--TCAAAACTAGCTGACG--GGTTTGC-AGCA--TGCCCTCAATGAGTT--TCA-------TT-----CA----------------A--------ATGTCAATGTTTGAAACCACAAAAATTATGGTTTTT-CT-C-AAAA-GTCC-ATCTTGCCA-AAA--G--------T-ATTTT---ACTTT---AAATTGG--TA----AA----GTTA---T-TGAAACCGTGAAAGAACTTATA-------------A-AT--A-------------TTC--------TCCA--GGTCCGGATCATTG----------TAAACATTTATCTG-ACAAG-GTC--A-AAAGCCATTTATGGCGTG-TA-GA-ATGAAAT-TAGAC-AAACTTT-A-TTTACCAGAA-GAAAT-GTCA-CTAGACCTGT--TTG-ATA----AAGTTGTGTTGGTA---C----TGT--CT--T--TGTAT-A-GTTTGTGAAAGTAT-GGGG-TTTCGAAAA--ATC-T-CGATATTATTG--AG-CGTA-TC-ACTT-CAATTT----------TTT---------------TA--A---TTTA---------A-G----AAGTT--AGCACTC---C-----AAA--T---TATG-G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-TACA-TTGT---ATAATAGTAACTGTT
gi|25 : TCGTAATATC-GGAGTCCGTCAAGGAGAAAT---------TTTAT--CTCC-------ATTTTC-A---------------------TTAGAAA-A-ATGTCCT-GCT-GA-TAGAAA-TA-T-A--GTC----GG-----------GTTATAGAGCTT-AATTACT----G-CA----A-TA---GAAAATGTA-ATGT--GTAGGAA-CTCGAATTGC-CAGATA--CTTTT------G-------T-ATG-CTG-ATAGTAC-TGCAA-T--T-tttatc
gi|23 : ttcttCGACAGGGGGAAAAA--------TCTGT--CCCCCCT-TTTATTTT--AC-TTTTTATCA---ATGATC-TTAGAAG-A-TTTTTTT-GATAGA-GAAAAA-TGTT-AT-GT-----GGTCTTTC--------A---------CAAT----TGAA-CAGT--G-TATT-GAGGACG-A-ACTT--TT----G--TA---TTTT-TGAA-A--TTTTTT-AT-CCT--GTTAT-ATG-CTG-AT-ATAC-AGTTATT--T-GT-C--TGAAAAT--GCTACTG--A-TTTAC-A
gi|13 : GAAAA---------TTTGT--TTCCATT-TTTTTCCTC----TTTATAGAA---GTGAT--CTAGA-G-A-ATCTTTT-ATT-GGACAAAAA-TA-T-A--GT-----GAGTCTCCAAGGCATTA-----CTC-C-----TCCAA----------TA---GAAAATG-A-ATTG--TT-------TT---GTACATGAA-A--CTATTT-AT-GTT--GTTTT-ATA-CTG-ATGATGC-TGTAA-T--T-AT-A--GCTGAGACTGCAGATG--A-TCT---ATCAATTGTAATCAATG---T--ACG-------TT------A---------------TA--------A-GTCAATA-CTGACAAAACTAAAATATTGA-TATT-CT-CTAGAGGGTCT-ATG---CCACAGAATGGTTTTTTTT-TTCTT---ACTAT---AA--CG---------AC----GTTACAGT-AGAAACTATGAAAG-ATTT-TA-------------A-AT--A--------------CC--------TCTAATAGTTGTTGTCTTTTCTTCAACAA-AAAAC--------GGACA-----C-AG-AAAACAATTTGAAGTGTAATCATA-A--AAAT-TAGAC-GG--TTTAA-TTTACCAGTatagtgtagcatta
gi|10 : AAAATG-ATATGT--TT----G-TTA---TGT--TAAA-A--CTTTGT-AT-ACT--CTTTT-ATG-CAG-ACGACAC-TGTTC-TAAT-AT-TGATCAGAAACTCCTTCTG--G-TTTAC-AACA--CTCACTCGATtca
gi|1 : AATTATGG-TTTT-CT-C-AAAAGGTC------T-TCA-AAAATG--------T-ATTTT---ACTTT---AA--TGG--TA----TA----GTTA---T-TGAAATCGTGAAAG-ATTT-TAGATATCTCGGAATA-AT--A-------------TTT--------TCCA--GGCCCGGATAATTT----------atcttttccgagtattgtagtttatggaaacttgccgtgaacatagctaaaaccatagtattaatattttcaaaaggccctatgtaaaaccatagttttttataaaaggcttttgatatggaaaataaaaaaaaattttcctatttgggaatatccctctaaagaagtggaaagtttaacaatgcaaagaatatttaacagaacaagcatcaaaagctctttatggtgtattacgtaagattcgttatttcaatttggctaaaattgtcagttagacttgtttgataaagtaaatcacccaattttactttactcttgtgaaatttggggttatgagaaaatggacattattgaaaaagtacaccttaaatttgttttaatttatcttgaatcttaagtcaagtaccccgaattctatggtgtatggggaaagtggtagatatccattgtcaattaatgtgattt
gi|10 : ----------AGAATATTTAACAGAACAAGCATC-AA-AA-GCTCTTTATGGTGTATTACGT-A--AGAT-TCGTT-AT--TTCAA-TTTGGC--TA-A-AATTGTCAGTTAGACTTGT--TTG-ATA----AAG-TAAAT---CAC--CCAATTTTACTT-------TAC-T-C-TTGTG-AAATTT-GGGG-TTATG-AGA--AAA-T-GGACATTATTGAAAA-AGTA--CACCTT-AAATTTG---------TTT---------------TA--A---TTTATCTTG----A-ATCTTAAG-TCAAGTACCC---C-----GAA--TTC-TAT--G-GTGTATGGGGAAAGTGGT-tttagggcaacccccctaaccccccaaccccccatttatctgaacaagctcaaaaagccatgtattagacattcaatttaccagtagaatgtcagcgagatttgtttgataaggttgttgtacctgtacttttgtatggttgtgaggtatgaggtttcgaaaatctcgacattatttagcgcatccacttaaaatttctaaaacatatttttgatttaagaagtagcactcctagttatatggtctatggagaaactggttgtttccctttatatgtaacagtttatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|19 : aaaatgatatgtttgttatgttaaaactttgtatactcttttatgcagacgacactgttctaatattgatcagaaactccttctggtttacaacactcactcgatatcttttccgagtattgtagtttatggaaacttgccgtgaacatagctaaaaccatagtattaatattttcaaaaggccctatgtaaaaccatagttttttataaaaggcttttgatatggaaaataaaaaaaaattttcctatttgggaatatccctctaaagaagtggaaagtttaacaatgcaaAAAGACTTATTT-AACAAA-TCC-AATAGAGCTATGTATGGTGTTAT-TGG-A--AAATGCAGAA-AA--CATAA-TCTATCCATA-A-ATT-GTAAATTCGATATCT--TTG-ATA----AAGTTGTA---AAAC--C----CATTCTT--C--TATAT-G-G-ATGTG-agatatccattgtcaattaatgtgattt
gi|16 : tttacttcaattctgaatgaaggacttaataaatatgcaaatagagttgaattgattctggaaaaaaaaattcaaaaatatttgggtgttacttttagaaaaagtggttcatataacctaaatatcAACATCTCTGTGAACA-G-GCT-AG-AAAGCAATGTA-GGAGTTATAGTA-A--GAAT-AAGAC-AA--TTTAAGTCTACC--TATG-ACT-G-CAGC-AGA--TGTTCTTGTATA----AA---GTGTT-AAAC--C----AGTCATA--T--TCAAT-GTG-TTGTG-AAAT-T---GG-TTATG-AAA----C-T-TG--ACTAGTA--AA-CGCATTCA---T-TAATTT----------TTT---------------TGAAA---TTTATCTATGTTTA-A----AAG-T---GTACTCTTTC-----ATG--T---GAT--GTTTTTATGG-GAGGCCGGT-CGTTTCT--T-TATA-T
gi|1 : CATTTATCTGAACAAG-CTC-AA-AAAGCCATGTAT---------------------TAGAC-A---TTCAA-TTTACCAGTA-G-AAT-GTCAGCGAGATTTGT--TTG-ATA----AGGTTGT--T-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTG-AGGTAT-GAGG-TTTCG-AAA--ATC-T-CGACATTATTT--AG-CGCA-TCCACTTAAAATTTCTAAAACATATTT---------------TTG-A---TTTA---------A-G----AAG-T--AGCACTC---C-----TAG--TTA-TAT--G-GTCTATGGAGAAACTGGT-TGTTTCC---------CTTT---AT-AT-GTAACAGTTgtccatttgtttatactagatggttcataactgggaaagtgtttctcaggtcagaaacaaaacgcatatatttat
gi|9 : aattatggttttctcaaaaggtcttcaaaaatgtattttactttaatggtatagttattgaaatcgtgaaagattttagatatctcggaataatattttccaggcccggataattttttagggcaacccccctaaccccccaacccccTGAACCAG-CAC-AG-AAAGCAATGTTCGGAGCTATTAGA-A--AAAC-AAGAC-AA--CCTAA-TTTACCTATC-G-ACT-ATCAGTTTGATTTAT--GTG-ATA----AAGTTGTA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTG-AAATAT-GGGT-TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGTT-TTGAATT---ATAT----------TTG---------------A---AC--TTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T---TAT-------TATGGAGAAACCGAT-Ctatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|31 : atctgATGTATGGAATTATAAGA-T--AAAT-CAGAC-AA--TTCAA-TTTACCAGTT-A-AGT-GCCAGCTTGATC-----TTG-ACAAATTAAGTTAT-TT--TAC--C----AG--CTT--TAATTTAC-G-G-GCGTG-AGATTT-GGGG-ATATG-AAA--ATT-TGCAAAATTATaattatgttcatactaaaactgtttcataatcccaggtccaaaaaactaaattttgttcattttataaatctatttacggatgcaatatgatgatgaaactttcaagaacacgtgggttgagttaatttaattttttttattattcttttgcattttctgatatttggaaaaacagggtaatctcaatgtgaaatggataaaaaatgcaataaaggtccgtttatgtagaaattgttgactgatattaatggctcatccaaggatcatatggatagaataattaaatcaatttaagtaatttgcctacaaaagatagaaaaatataaagtttaaattagaactacaaatcacagtgtactaatagagactggtaca
gi|32 : GTATGGAATTATAAGATAT-AAAT-CAGAC-AA--TTCAA-TTTACCAGTT-A-AGT-GCCAGCTTGATC-----TTG-ACAAATTAAGTTAT-TT--TAC--C----AG--CTT--T--AATTTCG-G-GCGTG-AGATTT-GGGG-ATATG-AAA--ATT-TGCAAAATTAT
gi|7 : GA-A--GAAT-AAGAC-AA--TTTAA-TCTACCTATC-G-ACT-GCCAGTCAGATTTCC--TTG-ATA----AAGTTGTA---ACAC--C----AGT-CTTA-T--TATGT-G-G-TTGTG-AAATAT-GGGG-TTATG-AAA--ACC-T-TGAACTTATTA--AA-CGCATTCATCT---AATTT----------TTT---------------TGAAA---TTTA---------
gi|22 : ggagttattaAT-GTCA-CTTGGTCTAT--TTC-ACA----ATATTGT--T-GTACTGC----TTTATTT--TA-CGTAT---G-TTAT----GTAC-GATG-TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TATG-TTAATTT-AAAATT----------TCT--------------------------------------G----AA-----AACATT-----------GA--TTTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-ttctatgtttaaaaagncaaacgcattcacctaaattttttttgaaatttattctatgtttaaaaagttgtactctttcatgtatggtttatggggaggcaggtcgattctctttatatgtcattgtttatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|21 : T-GTCAACTTGGTCTAT--TTC-ACA----ATATTGT--T-GTACTGC----TTTATTT--TA-CGTA-------TGTG-ATGTAC-GATG-TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TATG-TTAATTT-AAAATT----------TCT--------------------------------------G----AA-----AACATT-----------GA--TTTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-gcaaggtttacatgagatgactgcatactgggtaaaaattcgtaaatccggcaatgaaactgtaca
gi|28 : A----AACCTATATA-GTAC--T----TGTACCTG-T--TAAAT-G-G-GTGTG-AAATATTGGGA-TTTAG-AAGTTATT-T-AGATGTTATC------TGTA---AGCTT-CAAT----------------------------------AAAGTTTA---------A-A----AAA-T--CG-ACGC---C-----AAAGGT---TAT--G-GTTTATGGGGAATTAGGTGTGTATCCGAT-GTCA-GTGT---AT-Agcaaggtttacatgagaatgactgcatactgggtaaaattcgtaaatccggcaaatgaaactgtacatagcaatatatacatgtatt
gi|8 : AT-GGGG-TTATG-AGA--ATA-T-TGATAATATTA--AC-GGTT-TCATCCA-CGTTTT----------TTTAACAACATACT----T---A---TCTA---------A-A----GAG-T--AGCACGC---C-----AAGCTT---TAT--G-ATTTAGGGTGAATCTGG----------GA-TACCCTTGT---AT-AT-ACAATTTTT
gi|34 : CA-AAA--ATC-T-TGATATTATTG--AG-CGTA-TCCACTT-AAATTTCTAAAATATATTT---------------TTA-A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAG--T---TAT--A---------------TGGT-CGTTTCC------CT-TTGT---AT--T--TAACTGTTacaaaaatgatctcttattgggaaagcttgcagttcaataacaatgacaacaaattgataaagttgtttaatgtttgtatttaacatgcatgaatagggaaaataagaaatccatgaattcatggtttgaaaagtattttggacaatgtgcctctcaaaacattaacacgcagttataacgcaacgtattttaaagtcaagtgttaaccaaaggctatgagattcaattttacaaaaattggcagaaggatatatctatgcttcaaaagggtaattacaaaatttcaaaagaaaatttgaatgtattaatattccacattattaccaagaacggtacgaaaaatctccaatagttttgaactacaaaccatcaccttgctgttgagttaggcagatggaataaaaggatgaacgcttttgatatattatgcaactgtaaccaaattggagatgaatttcattatttttgaatg
gi|7 : --AA-CGCA-TTCACCT-AAATTT----------TTTTTGAAATTTATTCTAT---G---TTTA---------A-A----AAG-T--TGTACTCTTTC-------A--TG--TAT--G-GTTTATGGGGAGGCAGGT-CGATTCT---------CTTT---AT-AT-GTCATTGTTtatac
gi|36 : ggagttattagaagaataagacaatttaatctacctatcgactgccagtcagatttccttgataaagttgtaacaccagtcttattatgtggttgtgaaatatggggttatgaaaaccttgaacttattaaacgcattcatctaatttttttgaaatttattctatgtttaaaaagncaTT---------------A---A---TTTA---------A-G----AAA-T--AGTGCAC---C-----AAT--T---TATATG-GTTTATGGTGAAACTGGA-CGtatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
18 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTTCAAAACTGAATTTGGATTAGAGAAATACCTAAAATGAATAGAACAGTATTTATTTTATTGAATTCAGAACTGCAAATCACCGACTCCCAGTCGAGACTGGAAAATGGTGTGGCACTCCAAAACATGAGAGAATTTGCCATATCTGTAAAACGAATCAAATAGCTGATGAGTATTTATATATACTTTTGAATGCCAGTTTTTTGAAGAGTGGCGAAAAAAATATCTGTGTAAAAATATTGTTTTAAACCAAACTATTATAAATTTTCCGAATTATTGTCAACTGCTGACTCCAATGTACTTGTCAAATTGTGTAGTTTTATATCTAAAATATATGACCAAGTCTGTCCTCCTTGACCTGATATTACTCTGCTTTCATGTGTACATTGTATATTGTTTCAATTTGTATATATTGTTTATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGAACTTG
Unaligned ( gi|12 ): ATATTATTGACATTCAGCATGCAAATCACCGACTCTCCGGTCAAGACTGGCAGATGTTGCGTGGCACTCCAAAACATGAGAGATATTGCCATATCTGATAAAACGAATCAATAGCTGATGAAATAGAGTTTATATTCCTTGAATGCCATTTTTTCGGAAGAATGGCCAAAAATAAAAATAGTCTGATATAAAAAGATTTTTAGGAAACCAAACTATTAAAATTTTCTGAGATTAATTGTCATGGAATGAAATGTACATTTAATCGACTCTTTTATCATTTCCATGATAAAAGTCATCTACTACAAATATGACCAGAATTTTTCCTCCCTTGATTCATCTCAATTCATCTGATTTCTGCTTCTTTCAGGTGACCTTGTACATGTAATATTGTTTCGAATTTGTATATATTGTATATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGGAACTTGA
Unaligned ( gi|14 ): GAAACTGTTTATGTTATTTGATACAGATGACAGTAATTTTAGTAGAGTCTGCAAAAGATTTGTAGGTAGCGTTGGGTGAATTTAGAAGCTACTGTAAAGTATGGAAACTTATTGTGAATATTAGTGAAACAAAAATTGTAGTACGTGTAGTTTCTAAAGGTTTGATGGTCGACATCCCAAATGTTCTTTCACTCACAATGTATTATTTGTTGAAACAGGCAATGAATCCAAGTATTTACGAATAGTTTTATCAAAATCTGGTTCATTGTGTAACGTTAAAAAAACCAAATAAAAACCCGCCTCTGTGAGCAAACACAGAAAGCTGTATTTGGAGCCATTAATAAATAAGATTATTTGGTCTACCATTTCACTGTCAGTATCATTTAT
Unaligned ( gi|17 ): AAAATATCTGTGTAAAAATATTTTTATAAACCAAACTATTGCAAATTTTCTGAATTATTGTCAACTGCTGGACTCCATGTACTTGTCAAAATGTTGTTGGTTTGATATCTAAAATATTTATGGACCAAGTCTGTCTCCTTATTCATCTCAAGTATCTGATAATTTTTACTCTCTGATTTTTCTGTGTATACCTATTGACATTATTTGTTTCACATTTTGTTATATATTGTATTAGTAGAATCATGTACCTTTAGAGTGGGGTTGAGAGAAATAAACTGAACTACT
Unaligned ( gi|20 ): AAAAAAATATTTTAGTCCAAATCTCAGGTGCGAACCATTCCTGTCAAGAAGCGGAAAGTTTGCTTTTAACAGAAGTATATTAAACTTGTATTGAAAGGTCTTTACGCTAGATCATTATTTTTCATGGTTCGTGGTTCGAGCTCTTTATTACTTGTCGGCTAGACGTGATAGATACATGTAAAATCATCAACCCAATCTTATCTTATTTGTGAGATTTCGATTTATTACTGAAAAGGTACACCTAAAATC
Unaligned ( gi|24 ): AGCTGACTCCAATGTACTTGTACAAATTGTGTAGTTTTATGTCTAGTCTGTCCTCCTTGATTCATCTCATTCATCTGATATTACTCTGCTTTTTCATGTGTACCTTGTACATGTATATTGTTTCAATTTGTATATATTGTATATAGAACCTCATGTACATGTACCATTAAGTGGTGTGAGAGAAATAAATAAACTGAAAA
Unaligned ( gi|26 ): AAGAATATCTCACTGGGCAAAACTGCTTTTAAGTCCAGATAGTAAGATTGTGTATGTTTTATATAAGTTTTTATATGATCAATTCTGTGAAAGAAATTTTATGAATTCTTAGCTATCATGTAACAAAATATTTTAGATACTTGTGGGTATTCCCAAC
Unaligned ( gi|27 ): TCCTCCGTAATTCATTTCAATCATCTAAAATGGCTATCATGCTCTTTTCACACCATGTACCTTGTATATATTGTTCCTAACTGTATGAATATACAAGTACTGTAAATAGAACCTCATGTACCATAGCGTGGCATGAGAGAAGTATACTAAAGTTGA
Unaligned ( gi|29 ): TGTAGTTTTTAATATCTTAATACATGAACCTAAGTCTGTCCTCCTTTGAATTCATCTCAAGTGCATTCTGATTCTGCTTTTTTCATGTGTAGCTTTGTAGTATTTTTTTCAGTTGTAATATATTGTATAAGGAACCTCATGGTGGTGCAGAGAA
Unaligned ( gi|30 ): ATTTGACAAAGCCAATAGATCGAGCTATGTATGGTTTATTGGAAAATGCAGAACACATATATAAATATAATCTAATTATTCATCCATTGATTGTAAACTTGAAATGTTTGATAAAGTTGTAAAACCCATTATATGGATGT
Unaligned ( gi|33 ): ACTCCCATTCGTGATTGAAAGATGGTATGGCACTCAAAAATGGAAAGGACGTGTCATATCAATGATACATGTAGCGATCATCTAGCCGACGAATATGACTATGTTCTAGATAGCCAGGATTTTG
Unaligned ( gi|35 ): TAAAGATCAGTATATTTACAGAAATGGCAAGTATATTCATGATTCTTTTAATAAGATATACAGTATTTTCAGAAGCCTATTACTTAGGAATGTATATACT
Unaligned ( gi|37 ): CAAATTATTTTAATTCAAATTTTTCGTATCATGGTGAACTGCTGATTCCGGTGAAAGACATGAAATTGTGTAATTTCACAT
Unaligned ( gi|38 ): TCCTGAAATATATTTTATGTATGAAAAGTAGTATACCTTCGTATATGGTTTATGGTGAATCAGGTC
Unaligned ( gi|39 ): CTATATAGAACCTCATGTATCATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACT
Unaligned ( gi|40 ): TGCTTTTTCATGTGTACATAATGTATATTGTTTCAATTTGTATATATTGT
Unaligned ( gi|41 ): AAAGAATTTGCCATATCTGTAAAACTAATCAAAATAGCTG
Unaligned ( gi|42 ): CATTAAGTGGTGTAAGAGAAATAAATTGAACTTGAACTTA
Alignments
lowQualScore : 33333 111 1 111111 222222222 1 111 444444444444444444444444444444444 333333 111 3 33 2222222 111 1111 333333333333333333 111 2222222222 222222222 11 111111111 55555555555555555555555555555555555555555555555 33333333333333333 11111 111 666666666666666666666666666666666666666666666666 222222222 11111 22222222222222 111111 222222222 111111111111 333333333333333333333 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111111 11111 11111111111111 11111111 11111111111 11111 111 111111111 6666666666666666666666666666666666666666666666 1111111111111111 222222222222222222222 222222222
lowQualScore : 11 3 3 66666 777 0 444444 666666666 2 0 333 0 888888888888888888888888888888888 0 9 2 444444 2 777 77 3 3 0 0 22 3 2 1 2222222 11 4 1 3 6 99999 111 44 6 1 7 6 6 3333 99 7777 22 6 666666666666666666 5 000 3333333333 77 0 1 4 1 000000000 3 0 2 6 4 3 555 66 88888 99 1 4 4 1 4 4 22 4 4 999999999 1 22222222222222222222222222222222222222222222222 0 4 4 777 4 00000000000000000 55 2 4 4 55 777 1 4 4 0 2 4 77777 77777 0 1 1 66 1 99 5 5 6 111 999999999999999999999999999999999999999999999999 1 5 5 0 000000000 22222 4 88888888888888 4 4 4 222222 444444444 4 4 999999999999 777 88888 999999999999999999999 777 4 0 9999 9999 5 66 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 666 1 5 00000000000 11111 44 1 1 6 2 55 44444444444444 1 2 2 33 5 444 2 22 3 2 1 1 1 2 2 88888888 22222222222 66666 2 2 2222 2 0 55 33 2 33 3 2 7 1 333 2 555555555 33 5 7777777777777777777777777777777777777777777777 6666666666666666 2 444 444444444444444444444 66 44 2 2 4 666666666 888 5 5
lowQualScore : .. . . ..... ... . ...... ......... . . ... . ................................. . . . ...... . ... .. . . . . .. . . . ....... .. . . . . ..... ... .. . . . . . .... .. .... .. . .................. . ... .......... .. . . . . ......... . . . . . . ... .. ..... .. . . . . . . .. . . ......... . ............................................... . . . ... . ................. .. . . . .. ... . . . . . . ..... ..... . . . .. . .. . . . ... ................................................ . . . . ......... ..... . .............. . . . ...... ......... . . ............ ... ..... ..................... ... . . .... .... . .. .......................................................................................................................... ... . . ........... ..... .. . . . . .. .............. . . . .. . ... . .. . . . . . . . ........ ........... ..... . . .... . . .. .. . .. . . . . ... . ......... .. . .............................................. ................ . ... ..................... .. .. . . . ......... ... . .
lowQualScore : 77 2 2 22222 555 0 555555 000000000 5 0 555 2 555555555555555555555555555555555 2 8 0 888888 5 555 55 2 2 2 0 55 0 5 0 2222222 88 6 0 8 4 88888 777 33 7 0 8 7 7 5555 22 7777 00 7 222222222222222222 7 000 6666666666 55 2 0 4 0 000000000 0 5 4 4 0 2 777 44 22222 55 0 0 0 9 4 4 33 4 4 222222222 0 11111111111111111111111111111111111111111111111 8 0 0 000 0 44444444444444444 55 3 0 0 00 111 0 4 4 1 0 4 77777 44444 8 0 0 99 1 22 0 0 6 111 666666666666666666666666666666666666666666666666 4 0 0 5 000000000 55555 4 22222222222222 4 4 4 888888 666666666 4 6 777777777777 888 22222 888888888888888888888 888 4 1 4444 4444 3 11 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 0 9 44444444444 11111 22 0 9 8 5 99 77777777777777 0 5 5 44 0 444 5 22 6 7 0 0 8 5 2 88888888 22222222222 99999 2 5 9999 7 6 99 11 4 22 2 4 1 6 222 7 777777777 77 3 9999999999999999999999999999999999999999999999 3333333333333333 7 777 777777777777777777777 33 22 3 7 5 222222222 888 0 7
consensus : TAACCTTATTAGTGAAAGTCGA-CAGGT---TTT-AGAAA-GGGG-TAT---TCTAN-TACAGACAATA-TATTA-ACTTTGCATTTTCCTA-CAA-ATA------T-GA-CAACTGT--TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGCGA-ANAATGGTATTAATGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGNCTTTC----C-GTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-AT---T-TTT----A-CTT---TTTC-TAAAA--CTTTTT-A-TA-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAANCNGCTG--ACGG-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------T--------AATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-ATN-T--CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA-A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-A--TA-------------TTC--------TCC-----AGGTCCGGNTCATT----------------------T----------AA----------AA---CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNAGA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-NAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
Reference ( family-1027 ) : TAACCTTNCTAGTGAAAGTCGA---GGT---TTT-AGAAA-GNNA-TAT---TCTAN-TATAGACAATA-TATTA-ACTTTGCATTTTCCTA-TAA-ATA------T-GA-CAACTGT--T-AA-AAAGAGAAATTATTTTGCGC-TTCG-TTGA---TTTTAAGCAGGCTTTTGACAC-GTCTGT-GAAATGGTCTGTGGTACAAGNTA-TNA-ANAATGGTATTAACGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGAGTCCGNCAAG-GNGAAAA---------TCTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGNCTTTC----C-GTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-AT---T-TTT----A-CTT---TTTC-TAAAA--CTTTTT-A-TN-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAANCNGCTG--ACGG-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------T--------AATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-ATN-T--CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--CGG--TA-A-A--------GTTA---T-TGAAACCG----TGAA----AGANTT--T----------A-------------A-A--TA-------------TTC--------TCC-----AGGTCNGGNTCNTT----------------------T----------AA----------AA---CATTTNTCTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATAAGA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-NAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
gi|1 : AATTATGG-T--------T-----TTC-T-C-AA------AAGGTC------T--TCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA-T-A--------GTTA---T-TGAAATCG----TGAA----AGATTT--T----------AGATATCTCGGAATA-A--TA-------------TTT--------TCC-----AGGCCCGGATAATT----------------------T----------
gi|1 : ---CATTTATCTGAACAA------G-CT-CA---A-A--AAGCCATGTAT----------------------------------TAG-AC-A---TTCAA-TT---T-ACCAGTAG-AATGTCAGCGAGATTTGTTTG-ATAAGGTTG---T--T-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAGG-TATGAGG--TTTCG-AAA--ATC-T-CGACATTATTT--AG-CGC---A-TCCACTTAAAATT-TCTAAAACATATT----------T---------------TTG-A---TTTA---------A-G----AAG-T--AGCACTC---C-----TAG--TTAT---AT--G-GTCTATGGAGAAACTGGT-TGTTTCC---------CTTT---AT-AT-GTAACAGTTtttagggcaacccccctaaccccccaaccccccatttatctgaacaagctcaaaaagccatgtattagacattcaatttaccagtagaatgtcagcgagatttgtttgataaggttgttgtacctgtacttttgtatggttgtgaggtatgaggtttcgaaaatctcgacattatttagcgcatccacttaaaatttctaaaacatatttttgatttaagaagtagcactcctagttatatggtctatggagaaactggttgtttccctttatatgtaacagtttatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|10 : aattatggttttctcaaaaggtcttcaaaaatgtattttactttaatggtatagttattgaaatcgtgaaagattttagatatctcggaataatattttccaggcccggataattttttagggcaacccccctaaccccccaacccccAAAATG-ATAT---G-TTT----G-TTA---TGT--TAAAA--CTTTGT-A-TA-CTC--TTTTATG-CAG-ACGACACTGTT-CTAATA-T-TGATCAGAAACTCCTT--CTGG-TTTA-CA-ACACTCACTCGAT-ATCT--T---------TT-----CCGAG---------------T--------ATTGT-AGTT-TATGGAAACTTGCCGTGAACATAGCTAAAACCATAG-TA-------TTAATATTT-T-C-AA------AAGGCCC--TA-T--GTA-AAACCA--------T-A-GTTT-----TT-T---A--------TA-A-AAGGCTTTTGATA---T-GGAAAATA----AAAA----AAAATT--TTCCTATTTGGG-------------A-A--TA-------------TCC--------CTCTAAAGAAGT--GGAAAGTT----------------------T----------AACAATGCAAAGAA---TATTTAACAGAACAA------GCAT-CA-----A--AAGCTCTTTATGGTGTATTACGT-A--AG--------------ATTCG-TT-AT--TTCAA-TT---TGGCTA--AA-ATTGTCAGTTAGACTTGTTTG-ATAAAG-TA---AAT---CAC--CCAATTTTACTT-------TAC-T-C-TTGTGAAA-TTTGGGG--TTATG-AGA--AAA-T-GGACATTATTGAAAA-AGT---A--CACCTT-AAATT-TG---------TT----------T---------------TA--A---TTTATCTTG----A-ATCTTAAG-TCAAGTACCC---C-----GAA--TTCT---AT--G-GTGTATGGGGAAAGTGGT-tatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|13 : GAAAA---------TTTGTTTCCATT-TTTTTCCTC---TT-TATAGAA---GTGAT--CTAGA-G-A-ATCTTTTA-TT-GGACAAAAA-TA-TA--GT-----GAGTCTCCAAGGC-ATTA-----CTC-C-----TCC-----A----A-TA---GAAAATG-A-AT---T-GTT-------TT---GTACATGAAA--CTATTT-A-TG-TTG--TTTTATA-CTG-ATGATGCTGTA-AT--TA-T-A--GCTGAGACTGCAG--ATGA-TCTATCA-AT-TGTAATCAATG---T--ACG-------TT---------A---------------T--------AA-GTCAATA-C-TGACAA---------AACT-----AAAATATTGA-T--------A-----TTC-T-CTAG------AGGGTCT-ATG----CCACAGAATGGTTTTTTTT-T-TCTT---ACTA-T---AA--CG------A-C--------GTTACAGT-AGAAACTA----TGAA----AGATTT--T----------A-------------A-A--TA--------------CC--------TCT-----AA---TAGTTGTTG----------------------T---------------------------CTTTTCT-TCAACAAAAAACGG-ACACA---G-A--AAACAATTTGAAGTGTAATCATA-A--AA--------------ATTAG-AC-GG--TTTAA-TT---T-ACCAGTagatatccattgtcaattaatgtgattt
gi|14 : ---------------T--------ATTGTGAATA-T-TAGTGA---------AACA-----AAAATTGTAG-TACGTGTAGT-----TTC-T-A-AAGGTTTGATGGTCG-ACA-T--CCC-AAA-TG--------TTC-TTTC---ACTCAC---AA--TG---TA-TTA--------TTTG---T-TGAAACAGGCAATGAATCCAAGTATT--T----------ACG-----------A-A--TAGTT----------TTA--------TCA-----AAATCTGGTTCATTGTGTAACGTTAAAAAAACCAAAT----------AA----------AAACCCGCCTCTGTGAGCAA------A-CA-CA---G-A--AAGCTGTATTTGGAGCCATTA-A-T--AA--------------ATAAG-AT-TA--TTTGG-TC---T-ACCATTTC-ACTGTCAGtca
gi|15 : gaaactgtttatgttatttgatacagatgacagtaattttagtagagtctgcaaaagatttgtaggtagcgttgggtgaatttagaagctactgtaaagtatggaaactAACCTTTCTAATGAAAG--------GT---TTT-AGAAA-AAAAATATGCATCTATATATAGACCATA-TTTCA-GCTTTGCATTTTTTTA-TAGCATACTCTTCT-TA-CT-CTGTAGT-AA-AAAGAGCAATCATGTTGTGT-T--G-TTGAAGATTTTAAGCAGGGTTTTGATACAGCCTGGAGAAATGATCTTTGGTATAAGCTA-CTAGATAATGGGATTAAGGGGAAATGTTATAC-TT--T--TAAGGCAAATGTTTATAAAGG-AATCAAATCTAAG-ATAAGT-A--TA--AAT-GG-TGTA-TCA----T---------CAGATTAATT---CTT----------TGGTAATTTC-GGAGTTCACGACG-GTG-AAA---------TTTATCGCC-CT--------TC-ACTC-TATATAGTTTATAGT--TTGGAAG-A-GTtatcatttat
gi|16 : tc----------AA---CATCTCTGTGAACA-------G-GC-TA---G-A--AAGCAATGTA-GGAGTTATAGTA-A--GA--------------ATAAG-AC-AA--TTTAAGTC---T-ACCTAT-G-ACTG-CAGC-AGATGTTCTTGTATAAA---G---TGTT-AAAC--C----AGTCATA--T--TCAAT-GTG-TTGTGAAA-T-T--GG--TTATG-AAA----C-T-TG--ACTAGTA--AA-CGC---ATTCA---T-TAATT-T----------TT----------T---------------TGAAA---TTTATCTATGTTTA-A----AAG-T---GTACTCTTTC-----ATG--T--G---AT--GTTTTTATGG-GAGGCCGGT-CGTTTCT--T-TATA-T
gi|18 : AATGATA--GATGGAAAATGTTTCAAGGTCAT--AAA---AAATCTTTACAATGG-TATTAAATCAAAGAGT-GTC-A--TGTAGAT--A-TTGG-TCAATATT---------C---AGACTTCTGTTTC-------CA-TGTAACGTC-GCAGTTAGACAAG-GGGAAAA---------CCTGTCACCTTTCTTTGTTGGC-AGTA-TATTTGA---ATGATGCTTTGAAGAA-ATTTACTG-TT-TT-TAATAA-TG-----GTTCAACGGTCTTTC----A-AT-------CTT----TATTGTGAG-AA----A-TTAG-GAAAATG-A-ATGAATGTTT----A---------TT-TAAGA--TTGTTT-G-TG-CTgtccatttgtttatactagatggttcataactgggaaagtgtttctcaggtcagaaacaaaacgcatatatttat
gi|19 : A----------AA---GACTTATTT-AACAA------A-TC-CA---ATA--GAGCTATGTATGGTGTTATTGGA-A--AA--------------TGCAG-AA-AA--CATAA-TC---T-ATCCATAA-ATTGTAAATTCGATATCTTTG-ATAAAGTTG---TA---AAAC--C----CATTCTT--C--TATAT-G-G-ATGTG
gi|2 : tttacttcaattctgaatgaaggacttaataaatatgcaaatagagttgaattgattctggaaaaaaaaattcaaaaatatttgggtgttacttttagaaaaagtggttcatataacctaaatatcAGTCGA---GGTGGTTTT-AGGAA-GCTA-TAT---G--AA-CATAGACAAAAATATTACAATTTTCGTTTCATTT-T----TA------T-GAACAA--------GA-AAACAAAAATTAGTTTGCGCATTAG-TAGA---TTTCAAACAAGC----------GTATGT---AATGGTTTGTGGAGCAGGGTAGCTA-AGAATCGTATAAACTGTAAATGATT---GTTTGTGTCAA---AAATATGTAC-ACGGTAATTAAATAAA-G-AT-AGT-A--TG--GAT-GG-TGTA-TCT----T---------C---TGA-TT---TGTC-------AGTTGTGATGTA-GGTGTGCGGCAAG-GCAAAAA---------TCTGTC-CCTAA-TGTATTCTT-TTTC-GATATTA---ATAA---CCCGGCC-A-ATATC-TG-TT-AG---AAAA-CG-TA-T--------ACCTAT-------GTTA-----C-A-AAGTATTAC-AG-AATCTTA-TAATAGAGGATG-G-AA---T-TTT----A--TG---TATT-TAAAA--CTCTGT-GTTC-CTT--TTTTATG-CCG-TTCATACTGTC-AT--TC-T-G--ACAGAAACTCCTGATATAA-TTTA-CA-GAATACTT----TGA-TT--ATA-------TTGTGAACA--A---------------TAGAAAAGAAACGCCGATG-T-GGGTAA---------ATCA-----AAAA-TATAG-T--------G-----TTT-T-A-GA------AAGGCCCAATG-G--TAA-AAAAT---------C-A-TTTTCACACGT-CCTAAA--CAGAATACA-ACAACATT-GTCA---T-AGAAAATG----TAAA----ATAATT--T----------G-------------ATACCCA-------------TTCATTGTGTTTCT-----CGCTCAGGTTCTTTC---------------------T-----------------------A---CATATCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTAGA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT---------TTT-GAATTAT----------AT----------T---------------T---GAACTTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-C
gi|21 : TGTCAACTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G------TGATG-TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TAT---G-TTAATTT-AAAAT-T----------TC----------T--------------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-aattatgttcatactaaaactgtttcataatcccaggtccaaaaaactaaattttgttcattttataaatctattt
gi|22 : TGTCA-CTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G---TTATG----TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TAT---G-TTAATTT-AAAAT-T----------TC----------T--------------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-gcaaggtttacatgagaatgactgcatactgggtaaaattcgtaaatccggcaaatgaaactgtacatagcaatatatacatgtatt
gi|23 : aCGACAGG-GGGAAAAA--------TCTGTCCCCCCT-TTTATT-TT-ACTT-TTTATCA---ATGATC-TTAGAAG-A-TTTTTTTG-ATAGA-GAAAAA-TGTTA-TGT-----GGTCTTTC---------A---------CAAT----TGAA-CAGT--G-TATT-GAGGACG-A-AC---T-TTT----G--TA---TTTT-TGAAA--TTTTTT-A-TC-CTG--TTATATG-CTG-AT-ATACAGTT-AT--T--T-G--TCTGAAAATGCTA--CTGA-TTTA-CA-gcaaggtttacatgagatgactgcatactgggtaaaaattcgtaaatccggcaatgaaactgtaca
gi|25 : TCGTAATATC-GGAGTCCGTCAAG-GAGAAAT---------TTTATCTCC-------ATTTTC-A---------------------TTAGAAA-A-ATGTCCTG-CT-GA-TAGAAA-TA-TA--GT-----CGG-----------GTTATAGAGCTT-AATTACT----G-CA----A-TA---GAAAATGTA-AT---G-TGTAGGAA-CTCGAATTGC-CAG-----------A-TA-CTT--TTGTATG-CTG-ATAGTACTGCA-AT--Tatagtgtagcatta
gi|28 : ttcttAAACCTA---TATA-GTAC--T----TGTACCTG-T--TAAAT-G-G-GTGTGAAA-TATTGGGATTTA-G-AAGTTATT-T-AGATGTTATC------TGT---A---AGCTT-CAAT---------------------------------------------AAAGTTTA---------A-A----AAA-T--CG-ACGC---C-----AAAGGT--T---AT--G-GTTTATGGGGAATTAGGTGTGTATCCGAT-GTCA-GTGT---AT-A
gi|3 : TAACCTTATTAGTGAA-GTCAACCAGGT---TTTTAGAAAAGGGG-TAT---TCTAACTACAGA-AATA-TATTA-A-TTTGCATTTTCCTAACAA-ATA------TTGA-CAACTGT--TTAACAAAAAGAAACT-TTTTGTGCCTTCAATTTA---TTTTA--C-GGCTTTTGACACTGTCTATTGAAATGGGCTGTG-TACAAATTG-TGA-A-AATGGTATTAATGGCAAATGTTTTACATTCCT--TAA---AAATATGTTTGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AATCGA-CCAGCTCA----T---------C---TGAATT---TT-C-------AATTGCA-TGT--GGGGTCCCGCAAG-GTGAAA----------TGTATCTC-TCT-TTTGTTCTC-ACTTGTATAT-A---ATGAT--TTCGAAG-AGATTTCTTGGCT-GG-TAAAA--TG-TAATGT-----GGACTTTC----TTGTTA-----CTC-CAGTAACTCAAG-CA----ACTAAC-GAAA-TA-A-AT---T-TTT----A-CTT---TT-C-TAAAA--CTTTTT-A-TA-GTA--TTCTATG-CTG-ACGATACTTTTTAT--TAAT-T--TCAGA-TCAG-TG--ACG--TTTG-CAAGCATGC-CTCAAT-AGTT--TCA-------TT-----C---A---------------T--------AATGTCA-TG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTCCT-C-AA------AAGGTCC-ATC-TT-CCA-AAAATG--------T-AATTTT---ACTT-T---AA--TGG--TA-C-A--------GTTA---TCTGAAACCG----TGAA----AGA-TT--T----------A-------------A-A--TA-------------TTC--------T-C-----AGGTCCGGATCATT----------------------TA---------AA----------AA---CATTTCTCTGAACAG------G-TC-AA---A-A--AAGCCATGTATGGCGTGATACGA-A--AA--------------ATTAG-ACAAA--TTTAATTT---T-ACCAGTAG-AATGTCAGCTAG-CCTGTTTG-ATAAAGTTG---T-TT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGGT-TTTCG-AAA--ATCAT-CGATATTATTG--AGCCGT---A-TCAACTT-CAATT-T----------TT----------T---------------A---A---TTTA---------AGG----AAG-T--AGCACTC---A-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-T-TA-TTGTATAAT-AT-GTAACTGTT
gi|30 : ACAA------A-GC-CAATAG-ATCGAGCTATGTATGGT-TTATTGGA-A--AATGCAGAACACATATATAAATAT-AA--TCTAA-TTATTC-ATCCATTG-ATTGTAAACTTGAAATGTTTG-ATAAAGTTG---TAttaca
gi|31 : atttgATGTATGGAATTATAAGA-T--AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--TAATTTAC-G-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTATaaacccattatatggatgt
gi|32 : GTATGGAATTATAAGATAT-AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--T--AATTTCG-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTAT
gi|34 : CA-AAA--ATC-T-TGATATTATTG--AG-CGT---A-TCCACTT-AAATT-TCTAAAATATATT----------T---------------TTA-A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAG--T--T---AT--A---------------TGGT-CGTTTCC------CT-TTGT---AT--T--TAACTGTT
gi|36 : T----------T---------------A---A---TTTA---------A-G----AAA-T--AGTGCAC---C-----AAT--T--T---ATATG-GTTTATGGTGAAACTGGA-CGtatac
gi|4 : taatattcaaaccatatacTAACCTTATTAGTGAAAGTCAAACAGGT---TTT-AGAAA-GGGG-TAT---TCTAC-TACAGACAATA-TATTA-ACTTTGCATTTTCCTA-CAA-ATA------T-GA-CAACTGT--TTAACAAAGAGAAACTTTTTTGTGCCTTCA-TTTA---TTTTAAACAGGCTTTTGACACTGTCTATTGAAATGGGCTGTGGTACAAATTGGTGA-AAAATGGTATTAATGGCAAATGTTTTACATTCAT--TAA---AAATATGTATGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AAT-GA-CCAG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGTCAAG-GTGAAAA---------TGTATCTCCTCT-TTTGTTCTC-ACTG-TATATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGACTTTC----T-GTTA-----CTC-CAGTACTCCAAG-CA----A-TAAC-GAAAATA-A-AT---T-TTT----A-CTT---TTTC-TAAAA--CTTTTT-A-TA-GTA--TTCTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAATCAGCTG--ACGG-TTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A---------------T--------AATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-ATC-TT-CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA-A-A--------GTTA---T-TGAAACCG----TGAA----AGACTT--T----------A-------------A-A--TA-------------TTC--------TCC-----AGGTCCGGATCATT----------------------T----------AA----------AA---CATTTATCTGAACAA------G-GT-CA---A-A--AAGCCATGTATGGCGTGATACGA-A--AA--------------ATTAG-AC-AA--TTTAA-TT---T-ACCAGTAG-AATGTCAGCTAGACCTGTTTG-ATAAAGTTG---TGTT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGG--TTTCG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-CAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTTatatcctttgt
gi|5 : T---TTTC-------A-TTGCAATGTCCGGGGTCCGTCAAGTGAAAAAAAAAAAAGTGTTTTTCTCCTCT-TTTGTTCTCGACTG-TA-ATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CT-GG-TAAAAAATG-TA-TGT-----GGACTTTC----T-GTTA-----CTCTCAGTACTCCAAG-CA----A-TAAC-GAAA-TA-A-AT---T-TTT----AACTT---TTTC-TAAGAAGCTTTTTGA-TAGCTCATTCTTATGGCTGGACGATAA-GTT-AT--TA-TCT--TCAAAACTAGCTG--ACGGGTTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A------------------------AATGTCAATGTT-TGAAAC---------CACA-----AAAATTATGGTT--------T-----TTC-T-C-AA------AA-GTCC-ATC-TTGCCA-AAA--G--------T-A-TTTT---ACTT-T---AAATTGG--TA-A-A--------GTTA---T-TGAAACCG----TGAA----AGAACTTAT----------A-------------A-A--TA-------------TTC--------TCC-----AGGTCCGGATCATT----------------------G----------TA----------AA---CATTTATCTG-ACAA------G-GT-CA-----A--AAGCCATTTATGGCG-TGT-AGA-ATGAA--------------ATTAG-AC-AAACTTT-A-TT---T-ACCAGAAGAAATGTCA-CTAGACCTGTTTG-ATAAAGTTG---TGTTGGTA---C----TGT--CT--T--TGTAT-A-GTTTGTGAAAGTATGGGG--TTTCGAAAA--ATC-T-CGATATTATTG--AG-CGT---A-TC-ACTT-CAATT-T----------TT----------T---------------TA--A---TTTA---------A-G----AAGTT--AGCACTC---C-----AAA--T--T---ATG-G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-TACA-TTGT---ATAATAGTAACTGTT
gi|6 : --TAA---AAATATGTATGTTGG-GCGTAAAATCATG-TT-ATA-AACGG--AAT-GAATAGG-TTA----TGTCCGTGTGT---TGGGTT---TTTTTTTTTTTACGTGCAATGTG-GGAGTAAGGCAAG-GGGAGAA---------TTTATCTTCCTT-TCTGTTTTC-ATTA-TACATTA---ATGAC--CTTGAAA-C-ATTT-TTA-CA-AGAGAAAGA-GA-TA--GTC----GGGCTT------C-GAAA-----T-----GT-TTCTGAGTCA----A-T--T-GAAAAAG-A-CT---T-AAT----G-ATT---TACC-TGAAA--CTGTTA-A-TC-CTA--TTGTATA-CTG-ATGGCA--GTT-AT---A-T-TA-GCTGAATCCGCTG--AAGA-TTTA-CA-ACAGGCGTTAAATAAATTCTTCACATATTGTT-----C---AGAGTGGAAATTGAATT--------AATATTAATA-T-TGAAAA---------AACC-----AAAGTTATGA-T--------T-----TTT-TTC-AA------AGGGTCCTATAAT--GAA-GAAATG--------T----TTT---ATTA-C---AA--TGG--AA-A-T--------ATTA---T-TGAGAATG----TTAA----GGAATT--C----------A-------------A-A--TACTTAAGCATATTATTT--------TCT-----AGATCAGGCTCTTT----------------------TTACAAAGCCAAA----------AA---CATCTCTGTGAACAA------G-CC-CA---G-A--AAGCTATGTATGGTGTTATAAGG-A--AA--------------ATCAG-AC-AA--TTTAA-TT---T-ACCAATTA-AATGTCAACTTGATCTGTTTG-ACAAAGT-----CATT-TTAC--C----TGTATTA--A--CTTAT-G-G-GTACGAAA-TTTGGGG--ATACG-AAA--ACT-TACAA-ATTATtttatc
gi|7 : aatttttatttaGGAGTTATTAGA-A--GA--------------ATAAG-AC-AA--TTTAA-TC---T-ACCTATCG-ACTGCCAGTCAGATTTCCTTG-ATAAAGTTG---TA---ACAC--C----AGT-CTTA-T--TATGT-G-G-TTGTGAAA-TATGGGG--TTATG-AAA--ACC-T-TGAACTTATTA--AA-CGC---ATTCA--TC-TAATT-T----------TT----------T---------------TGAAA---TTTA---------
gi|7 : --AA-CGC---A-TTCACCT-AAATT-T----------TT----------TTTGAAATTTATTCTAT---G---TTTA---------A-A----AAG-T--TGTACTCTTTC-------A--TG-T---AT--G-GTTTATGGGGAGGCAGGT-CGATTCT---------CTTT---AT-AT-GTCATTGTTttctatgtttaaaaagncaaacgcattcacctaaattttttttgaaatttattctatgtttaaaaagttgtactctttcatgtatggtttatggggaggcaggtcgattctctttatatgtcattgtttatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|8 : ggagttattagaagaataagacaatttaatctacctatcgactgccagtcagatttccttgataaagttgtaacaccagtcttattatgtggttgtgaaatatggggttatgaaaaccttgaacttattaaacgcattcatctaatttttttgaaatttattctatgtttaaaaagncaATGGGG--TTATG-AGA--ATA-T-TGATAATATTA--AC-GGTTTCA-TCCACGT-T--TT-T----------TTAACAACATACT---------------T---A---TCTA---------A-A----GAG-T--AGCACGC---C-----AAGCTT--T---AT--G-ATTTAGGGTGAATCTGG----------GA-TACCCTTGT---AT-AT-ACAATTTTTtatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|9 : TCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTAGA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT---------TTT-GAATTAT----------AT----------T---------------T---GAACTTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-Cacaaaaatgatctcttattgggaaagcttgcagttcaataacaatgacaacaaattgataaagttgtttaatgtttgtatttaacatgcatgaatagggaaaataagaaatccatgaattcatggtttgaaaagtattttggacaatgtgcctctcaaaacattaacacgcagttataacgcaacgtattttaaagtcaagtgttaaccaaaggctatgagattcaattttacaaaaattggcagaaggatatatctatgcttcaaaagggtaattacaaaatttcaaaagaaaatttgaatgtattaatattccacattattaccaagaacggtacgaaaaatctccaatagttttgaactacaaaccatcaccttgctgttgagttaggcagatggaataaaaggatgaacgcttttgatatattatgcaactgtaaccaaattggagatgaatttcattatttttgaatg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTCAAAACTGAATTTGGATTAGAGAAATACCTAAAATGAATAGAACAGTATTTATTTTATTGAATTCAGAACTGCAAATCACCGACTCCCAGTCGAGACTGGAAAATGGTGTGGCACTCCAAAACATGAGAGAATTTGCCATATCTGTAAAACGAATCAAATAGCTGATGAGTATTTATATATACTTTTGAATGCCAGTTTTTTGAAGAGTGGCGAAAAAAATATCTGTGTAAAAATATTGTTTTAAACCAAACTATTATAAATTTTCCGAATTATTGTCAACTGCTGACTCCAATGTACTTGTCAAATTGTGTAGTTTTATATCTAAAATATATGACCAAGTCTGTCCTCCTTGACCTGATATTACTCTGCTTTCATGTGTACATTGTATATTGTTTCAATTTGTATATATTGTTTATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGAACTTG
Unaligned ( gi|12 ): ATATTATTGACATTCAGCATGCAAATCACCGACTCTCCGGTCAAGACTGGCAGATGTTGCGTGGCACTCCAAAACATGAGAGATATTGCCATATCTGATAAAACGAATCAATAGCTGATGAAATAGAGTTTATATTCCTTGAATGCCATTTTTTCGGAAGAATGGCCAAAAATAAAAATAGTCTGATATAAAAAGATTTTTAGGAAACCAAACTATTAAAATTTTCTGAGATTAATTGTCATGGAATGAAATGTACATTTAATCGACTCTTTTATCATTTCCATGATAAAAGTCATCTACTACAAATATGACCAGAATTTTTCCTCCCTTGATTCATCTCAATTCATCTGATTTCTGCTTCTTTCAGGTGACCTTGTACATGTAATATTGTTTCGAATTTGTATATATTGTATATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGGAACTTGA
Unaligned ( gi|17 ): AAAATATCTGTGTAAAAATATTTTTATAAACCAAACTATTGCAAATTTTCTGAATTATTGTCAACTGCTGGACTCCATGTACTTGTCAAAATGTTGTTGGTTTGATATCTAAAATATTTATGGACCAAGTCTGTCTCCTTATTCATCTCAAGTATCTGATAATTTTTACTCTCTGATTTTTCTGTGTATACCTATTGACATTATTTGTTTCACATTTTGTTATATATTGTATTAGTAGAATCATGTACCTTTAGAGTGGGGTTGAGAGAAATAAACTGAACTACT
Unaligned ( gi|20 ): AAAAAAATATTTTAGTCCAAATCTCAGGTGCGAACCATTCCTGTCAAGAAGCGGAAAGTTTGCTTTTAACAGAAGTATATTAAACTTGTATTGAAAGGTCTTTACGCTAGATCATTATTTTTCATGGTTCGTGGTTCGAGCTCTTTATTACTTGTCGGCTAGACGTGATAGATACATGTAAAATCATCAACCCAATCTTATCTTATTTGTGAGATTTCGATTTATTACTGAAAAGGTACACCTAAAATC
Unaligned ( gi|24 ): AGCTGACTCCAATGTACTTGTACAAATTGTGTAGTTTTATGTCTAGTCTGTCCTCCTTGATTCATCTCATTCATCTGATATTACTCTGCTTTTTCATGTGTACCTTGTACATGTATATTGTTTCAATTTGTATATATTGTATATAGAACCTCATGTACATGTACCATTAAGTGGTGTGAGAGAAATAAATAAACTGAAAA
Unaligned ( gi|26 ): AAGAATATCTCACTGGGCAAAACTGCTTTTAAGTCCAGATAGTAAGATTGTGTATGTTTTATATAAGTTTTTATATGATCAATTCTGTGAAAGAAATTTTATGAATTCTTAGCTATCATGTAACAAAATATTTTAGATACTTGTGGGTATTCCCAAC
Unaligned ( gi|27 ): TCCTCCGTAATTCATTTCAATCATCTAAAATGGCTATCATGCTCTTTTCACACCATGTACCTTGTATATATTGTTCCTAACTGTATGAATATACAAGTACTGTAAATAGAACCTCATGTACCATAGCGTGGCATGAGAGAAGTATACTAAAGTTGA
Unaligned ( gi|29 ): TGTAGTTTTTAATATCTTAATACATGAACCTAAGTCTGTCCTCCTTTGAATTCATCTCAAGTGCATTCTGATTCTGCTTTTTTCATGTGTAGCTTTGTAGTATTTTTTTCAGTTGTAATATATTGTATAAGGAACCTCATGGTGGTGCAGAGAA
Unaligned ( gi|33 ): ACTCCCATTCGTGATTGAAAGATGGTATGGCACTCAAAAATGGAAAGGACGTGTCATATCAATGATACATGTAGCGATCATCTAGCCGACGAATATGACTATGTTCTAGATAGCCAGGATTTTG
Unaligned ( gi|35 ): TAAAGATCAGTATATTTACAGAAATGGCAAGTATATTCATGATTCTTTTAATAAGATATACAGTATTTTCAGAAGCCTATTACTTAGGAATGTATATACT
Unaligned ( gi|37 ): CAAATTATTTTAATTCAAATTTTTCGTATCATGGTGAACTGCTGATTCCGGTGAAAGACATGAAATTGTGTAATTTCACAT
Unaligned ( gi|38 ): TCCTGAAATATATTTTATGTATGAAAAGTAGTATACCTTCGTATATGGTTTATGGTGAATCAGGTC
Unaligned ( gi|39 ): CTATATAGAACCTCATGTATCATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACT
Unaligned ( gi|40 ): TGCTTTTTCATGTGTACATAATGTATATTGTTTCAATTTGTATATATTGT
Unaligned ( gi|41 ): AAAGAATTTGCCATATCTGTAAAACTAATCAAAATAGCTG
Unaligned ( gi|42 ): CATTAAGTGGTGTAAGAGAAATAAATTGAACTTGAACTTA
Alignments
lowQualScore : 3333333 1 111111 222222222 1 1111 1 111 1 1 33333333 11 1 111 111 1 111 1111 333333333333333333 111 2222222222 222222222 11 111111111 55555555555555555555555555555555555555555555555 3333333333333333 11111 1111 111 5555555555555555555555555555555555555555555555555 222222222 11111 22222222222222 111111 2222222222 111111111111 33333333333333333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111111 11111 11111111111111 11111111 11111111111 11111 111 111111111 6666666666666666666666666666666666666666666666 111111111 222222222222222222222 222222222
lowQualScore : 3 3 4444444 0 222222 666666666 2 0 5555 0 777 66 0 0 66666666 3 3 33 8 0 9 55 0 0 1 777 44 3 3 0 3 9 1 2 0 111 0 11 1 3 6 99999 111 44 6 1 7 6 6 3333 99 7777 22 6 666666666666666666 5 000 3333333333 77 1 0 1 4 1 000000000 0 0 2 6 4 555 66 88888 99 1 4 4 1 4 4 22 4 4 888888888 1 22222222222222222222222222222222222222222222222 0 4 4 777 4 0000000000000000 55 2 4 999 777 1 4 4 0 2 4 77777 77777 0 1 1 1 6666 5 5 6 0 111 9999999999999999999999999999999999999999999999999 1 5 5 0 000000000 22222 1 4 88888888888888 4 4 4 222222 4444444444 4 4 999999999999 777 88888 66 55555555555555555555 777 4 0 9999 9999 66 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 666 0 4 00000000000 11111 44 1 1 1 222 2 55 44444444444444 1 2 2 33 5 444 2 22 3 2 1 1 1 2 2 88888888 22222222222 66666 2 2 2222 2 0 55 33 2 33 3 2 7 1 333 2 555555555 33 5 7777777777777777777777777777777777777777777777 666666666 555555 2 444 444444444444444444444 66 44 2 2 4 666666666 888 5 5
lowQualScore : . . ....... . ...... ......... . . .... . ... .. . . ........ . . .. . . . .. . . . ... .. . . . . . . . . ... . .. . . . ..... ... .. . . . . . .... .. .... .. . .................. . ... .......... .. . . . . . ......... . . . . . ... .. ..... .. . . . . . . .. . . ......... . ............................................... . . . ... . ................ .. . . ... ... . . . . . . ..... ..... . . . . .... . . . . ... ................................................. . . . . ......... ..... . . .............. . . . ...... .......... . . ............ ... ..... .. .................... ... . . .... .... .. ............................................................................................................................ ... . . ........... ..... .. . . . ... . .. .............. . . . .. . ... . .. . . . . . . . ........ ........... ..... . . .... . . .. .. . .. . . . . ... . ......... .. . .............................................. ......... ...... . ... ..................... .. .. . . . ......... ... . .
lowQualScore : 2 2 5555555 0 555555 000000000 5 0 0000 0 555 88 0 0 22222222 2 2 00 8 2 8 00 2 0 0 555 00 2 2 2 5 8 0 5 8 000 8 88 0 8 4 88888 777 33 7 0 8 7 7 5555 22 7777 00 7 222222222222222222 7 000 6666666666 55 1 2 0 4 0 000000000 3 5 4 4 0 777 44 22222 55 0 0 0 9 4 4 33 4 4 222222222 0 11111111111111111111111111111111111111111111111 8 0 0 000 0 4444444444444444 55 3 0 222 111 0 4 4 1 0 4 77777 44444 8 0 0 1 1111 0 0 6 7 111 9999999999999999999999999999999999999999999999999 4 0 0 5 000000000 55555 0 4 22222222222222 4 4 4 888888 6666666666 4 6 777777777777 888 22222 11 77777777777777777777 888 4 1 4444 4444 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 444 4 0 44444444444 11111 22 0 9 1 777 5 99 77777777777777 0 5 5 44 0 444 5 22 6 7 0 0 8 5 2 88888888 22222222222 99999 2 5 9999 7 6 99 11 4 22 2 4 1 6 222 7 777777777 77 3 9999999999999999999999999999999999999999999999 222222222 888888 7 777 777777777777777777777 33 22 3 7 5 222222222 888 0 7
consensus : TAACCTTATTAGTGAAAGTCGA-C-G-GGTTTT-AGAAA-GGGG-TAT---TCTAN-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGTGAANAATGGTATTAATGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGNCTTTC----C-GTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAANCNGCTGACG--G-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TN-T--CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGGATCGTT----------------------T----------AA----------AA---CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-NAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
Reference ( family-1027 ) : TAACCTTATTAGTGAAAGTCGA-C-A-GGTTTT-AGAAA-GGGG-TAT---TCTAN-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGCGAANAATGGTATTAATGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGNCTTTC----C-GTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAANCNGCTGACG--G-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TN-T--CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGGNTCATT----------------------T----------AA----------AA---CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-NAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
gi|1 : AATTATGG-T--------T-----TTC-T-C-AA------AAGGTC-------T--TCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----T-A--------GTTA---T-TGAAATCG----TGAA----AGATTT--T----------AGATATCTCGGAATA-AT--A-------------TTT--------TCC-----A--GGCCCGGATAATT----------------------T----------
gi|1 : ---CATTTATCTGAACAA------G-CT-CA---A-A--AAGCCATGTAT-----------------------------------TAG-AC-A---TTCAA-TT---T-ACCAGTAG-AATGTCAGCGAGATTTGTTTG-ATAAGGTTG---T--T-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAGG-TATGAGG--TTTCG-AAA--ATC-T-CGACATTATTT--AG-CGC---A-TCCACTTAAAATT-TCTAAAACATATT----------T---------------TTG-A---TTTA---------A-G----AAG-T--AGCACTC---C-----TAG--TTAT---AT--G-GTCTATGGAGAAACTGGT-TGTTTCC---------CTTT---AT-AT-GTAACAGTTtttagggcaacccccctaaccccccaaccccccatttatctgaacaagctcaaaaagccatgtattagacattcaatttaccagtagaatgtcagcgagatttgtttgataaggttgttgtacctgtacttttgtatggttgtgaggtatgaggtttcgaaaatctcgacattatttagcgcatccacttaaaatttctaaaacatatttttgatttaagaagtagcactcctagttatatggtctatggagaaactggttgtttccctttatatgtaacagtttatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|10 : aattatggttttctcaaaaggtcttcaaaaatgtattttactttaatggtatagttattgaaatcgtgaaagattttagatatctcggaataatattttccaggcccggataattttttagggcaacccccctaaccccccaacccccAAAATG-ATAT---G-TTTG----TTA---TGT--TAAAA--CTTTGT-AT-A-CTC--TTTTATG-CAG-ACGACACTGTT-CTAATA-T-TGATCAGAAACTCCTTCTG--G-TTTA-CA-ACACTCACTCGAT-ATCT--T---------TT-----CCGAG---------------TA--------TTGT-AGTT-TATGGAAACTTGCCGTGAACATAGCTAAAACCATAG-TA-------TTAATATTT-T-C-AA------AAGGCCC---TA-T--GTA-AAACCA--------T-A-GTTT-----TT-T---A--------TA----A-AAGGCTTTTGATA---T-GGAAAATA----AAAA----AAAATT--TTCCTATTTGGG-------------A-AT--A-------------TCC--------CTCTAAAGA--AGT--GGAAAGTT----------------------T----------AACAATGCAAAGAA---TATTTAACAGAACAA------GCAT-CA-----A--AAGCTCTTTATGGTG-TATTACGT-A--AG--------------ATTCG-TT-AT--TTCAA-TT---TGGCTA--AA-ATTGTCAGTTAGACTTGTTTG-ATAAAG-TA---AAT---CAC--CCAATTTTACTT-------TAC-T-C-TTGTGAAA-TTTGGGG--TTATG-AGA--AAA-T-GGACATTATTGAAAA-AGT---A--CACCTT-AAATT-TG---------TT----------T---------------TA--A---TTTATCTTG----A-ATCTTAAG-TCAAGTACCC---C-----GAA--TTCT---AT--G-GTGTATGGGGAAAGTGGT-tatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|13 : GAAAA---------TTTGTTTCCATT-TTTTTCCTC---TT-TATAGAA---GTGAT--CTAGA-G-A-ATCTTTTA-TT-GGACAAAAA-TA-TA--GT-----GAGTCTCCAAGGC-ATTA-----CTC-C-----TCC-----A----A-TA---GAAAATG-A-AT---T-GTT------TT---GTACATGAAA--CTATTT-AT-G-TTG--TTTTATA-CTG-ATGATGCTGTA-AT--TA-T-A--GCTGAGACTGCAGATG--A-TCTATCA-AT-TGTAATCAATG---T--ACG-------TT---------A---------------TA--------A-GTCAATA-C-TGACAA---------AACT-----AAAATATTGA-T--------A-----TTC-T-CTAG------AGGGTCT-A-TG----CCACAGAATGGTTTTTTTT-T-TCTT---ACTA-T---AA--CG---------A-C--------GTTACAGT-AGAAACTA----TGAA----AGATTT--T----------A-------------A-AT--A--------------CC--------TCT-----AATAGTT---GTTGTC----------------------T-----------------------------TTTCT-TCAACAAAAAACGG-ACACA---G-A--AAACAATTTGAAGTGTAATCA-TA-A--AA--------------ATTAG-AC-GG--TTTAA-TT---T-ACCAGTagatatccattgtcaattaatgtgattt
gi|14 : ---------------TA--------TTGTGAATA-T-TAGTGA---------AACA-----AAAATTGTAG-TACGTGTAGT-----TTC-T-A-AAGGTTTGATGGTCG-A-CA-T--CCC-AAA-TG--------TTC-TTTC---ACTCAC---AA--TG---TA----TTA--------TTTG---T-TGAAACAGGCAATGAATCCAAGTATT--T----------ACG-----------A-AT--AGTT----------TTA--------TCA-----A--AATCTGGTTCATTGTGTAACGTTAAAAAAACCAAAT----------AA----------AAACCCGCCTCTGTGAGCAA------A-CA-CA---G-A--AAGCTGTATTTGGAGCCATTA--A-T--AA--------------ATAAG-AT-TA--TTTGG-TC---T-ACCATTTC-ACTGTCAGtca
gi|15 : gaaactgtttatgttatttgatacagatgacagtaattttagtagagtctgcaaaagatttgtaggtagcgttgggtgaatttagaagctactgtaaagtatggaaactAACCTTTCTAATGAAAG----------GTTTT-AGAAA-AAAAATATGCATCTATATATAGACCATA-TTTCA--GCTTT-G---CATTTTTTTA-TAGCATACTCTTCT-TACT-CTGTAGTAA-AAAGAGCAATCATGTTGTG---TTG-TTGAAGATTTTAAGCAGGGTTTTGATACAGCCTGGAGAAATGATCTTTGGTATAAGCTACTAGATAATGGGATTAAGGGGAAATGTTATAC-TT--T--TAAGGCAAATGTTTATAAAGG-AATCAAATCTAAG-ATAAGT-A--TA--AAT-GG-TGTA-TCA----T---------CAGATTAATT---CTT----------TGGTAATTTC-GGAGTTCACGACG-GTG-AAA---------TTTATCGCC-CT--------TC-ACTC-TATATAGTTTATAGT--TTGGAAG-A-GTtatcatttat
gi|16 : tc----------AA---CATCTCTGTGAACA-------G-GC-TA---G-A--AAGCAATGTA-GGAGTTATAG-TA-A--GA--------------ATAAG-AC-AA--TTTAAGTC---T-ACCTAT-G-ACTG-CAGC-AGATGTTCTTGTATAAA---G---TGTT-AAAC--C----AGTCATA--T--TCAAT-GTG-TTGTGAAA-T-T--GG--TTATG-AAA----C-T-TG--ACTAGTA--AA-CGC---ATTCA---T-TAATT-T----------TT----------T---------------TGAAA---TTTATCTATGTTTA-A----AAG-T---GTACTCTTTC-----ATG--T--G---AT--GTTTTTATGG-GAGGCCGGT-CGTTTCT--T-TATA-T
gi|18 : AATGATA--GATGGAAAATGTTTCAAGGTCAT--AAA---AAATCTTTACAATGG-TATTAAATCAAAGAGT-GTC-A--TGTAGAT--A-TTGG-TCAATATT---------C---AGACTTCTGTTTC-------CA-TGTAACGTC-GCAGTTAGACAAG-GGGAAAA---------CCTGTCACCTTTCTTTGTTGGC-AGTA-TATTTGA---ATGATGCTTTGAAGAA-ATTTACTG-TT-TT-TAATAA-TG-----GTTCAACGGTCTTTC----A-AT-------CTT----TATTGTGAG-AA----A-TTAG-GAAAATG-A-ATGAATGTTTA------------TT-TAAGA--TTGTTT-GT-G-CTgtccatttgtttatactagatggttcataactgggaaagtgtttctcaggtcagaaacaaaacgcatatatttat
gi|19 : A----------AA---GACTTATTT-AACAA------A-TC-CA---ATA--GAGCTATGTATGGTGTTATTG-GA-A--AA--------------TGCAG-AA-AA--CATAA-TC---T-ATCCATAA-ATTGTAAATTCGATATCTTTG-ATAAAGTTG---TA---AAAC--C----CATTCTT--C--TATAT-G-G-ATGTG
gi|2 : tttacttcaattctgaatgaaggacttaataaatatgcaaatagagttgaattgattctggaaaaaaaaattcaaaaatatttgggtgttacttttagaaaaagtggttcatataacctaaatatcAGTCGA-G-GTGGTTTT-AGGAA-GCTA-TAT---G--AA-CATAGACAAAAATATTACAATTTTCGTTTCATTTT--TA-TGA-ACA------A-GAAAAC-------------AAAAATTAGTTTGCGCATTAG-TAGA---TTTCAAACAAGC----------GTATGT---AATGGTTTGTGGAGCAGGGTAGCTAAGAATCGTATAAACTGTAAATGATT---GTTTGTGTCAA---AAATATGTAC-ACGGTAATTAAATAAA-G-AT-AGT-A--TG--GAT-GG-TGTA-TCT----T---------C---TGA-TT---TGTC-------AGTTGTGATGTA-GGTGTGCGGCAAG-GCAAAAA---------TCTGTC-CCTAA-TGTATTCTT-TTTC-GATATTA---ATAAC--CCGGCC--A-ATATCT-G-TT-AG---AAAA-CG-TA-TA--------CCTAT-------GTTA-----C-A-AAGTATTAC-AG-AATCTTA-TAATAGAGGATG-G-AA---T-TTTA----TGT---ATT--TAAAA--CTCTGT-GTTC-CTT--TTTTATG-CCG-TTCATACTGTC-AT--TC-T-G--ACAGAAACTCCTGATATAA-TTTA-CA-GAATACTTT----GA-TT--ATA-------TTGTGAAC---AA--------------TAGAAAAGAAACGCCGATG-T-GGGTAA---------ATCA-----AAAAT-ATAG-T--------G-----TTT-T-A-GA------AAGGCCC-AATG-G--TAA-AAAAT---------C-A-TTTTCACACGT-CCTAAA--CAGAATACAACA-ACATT----GTCA---T-AGAAAATG----TAAA----ATAATT--T----------G-------------ATACCCA-------------TTCATTGTGTTTCT-----C--GCTCAGGTTCTTTC---------------------T----------A----------------CATATCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTA-GA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT---------TTT-GAATTAT----------AT----------T---------------T---GAACTTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-C
gi|21 : TGTCAACTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G------TGATG-TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TAT---G-TTAATTT-AAAAT-T----------TC----------T--------------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-aattatgttcatactaaaactgtttcataatcccaggtccaaaaaactaaattttgttcattttataaatctattt
gi|22 : TGTCA-CTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G---TTATG----TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TAT---G-TTAATTT-AAAAT-T----------TC----------T--------------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-gcaaggtttacatgagaatgactgcatactgggtaaaattcgtaaatccggcaaatgaaactgtacatagcaatatatacatgtatt
gi|23 : aCGACAGG-GGGAAAAA--------TCTGTCCCCCCT-TTTATTTT--ACTT-TTTATCA---ATGATC-TTAGAAG-A-TTTTTTTG-ATAGA-GAAAAA-TGTTA-TGT-----GGTCTTTC---------A---------CAAT----TGAA-CAGT--G-TATT-GAGGACG-A-AC---T-TTTG-----TA---TTTT-TGAAA--TTTTTT-AT-C-CTG--TTATATG-CTG-AT-ATACAGTT-AT--T--T-G--TCTGAAAATGCTACTG--A-TTTA-CA-gcaaggtttacatgagatgactgcatactgggtaaaaattcgtaaatccggcaatgaaactgtaca
gi|25 : TCGTAATATC-GGAGTCCGTCAAG-GAGAAAT---------TTTATCTCC-------ATTTTC-A---------------------TTAGAAA-A-ATGTCCTG-CT-GA-TAGAAA-TA-TA--GT-----CGG-----------GTTATAGAGCTT-AATTACT----G-CA----A-TA---GAAAATGTA-AT---G-TGTAGGAACTCGAATTGC-CAGA-----------T-A-CTT--TTGTATG-CTG-ATAGTACTGCA-AT--Tatagtgtagcatta
gi|28 : ttcttAAACCTA---TATA-GTAC--T----TGTACCTG-T--TAAAT-G-G-GTGTGAAA-TATTGGGATTTA-G-AAGTTATT-T-AGATGTTATC------TGT---A---AGCTT-CAAT---------------------------------------------AAAGTTTA---------A-A----AAA-T--CG-ACGC---C-----AAAGGT--T---AT--G-GTTTATGGGGAATTAGGTGTGTATCCGAT-GTCA-GTGT---AT-A
gi|3 : TAACCTTATTAGTGAA-GTCAA-CCA-GGTTTTTAGAAAAGGGG-TAT---TCTAACTACAGA-AATA-TATTA--A-TTT-G---CATTTTCCTAACAA-ATA------TTGACAACTGT-TTAACAAAAAGAAACT-TTTTGTGCCTTCAATTTA---TTTTA--C-GGCTTTTGACACTGTCTATTGAAATGGGCTGTG-TACAAATTG-TGAA-AATGGTATTAATGGCAAATGTTTTACATTCCT--TAA---AAATATGTTTGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AATCGA-CCAGCTCA----T---------C---TGAATT---TT-C-------AATTGCA-TGT--GGGGTCCCGCAAG-GTGAAA----------TGTATCTC-TCT-TTTGTTCTC-ACTTGTATAT-A---ATGAT--TTCGAAG-AGATTTCTTGGCT-GG-TAAAA--TG-TAATGT-----GGACTTTC----TTGTTA-----CTC-CAGTAACTCAAG-CA----ACTAAC-GAAA-TA-A-AT---T-TTTA----CTT---TT-C-TAAAA--CTTTTT-AT-A-GTA--TTCTATG-CTG-ACGATACTTTTTAT--TAAT-T--TCAGA-TCAG-TGACG----TTTG-CAAGCATGC-CTCAAT-AGTT--TCA-------TT-----C---A---------------TA--------ATGTCA-TG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTCCT-C-AA------AAGGTCC-A-TC-TT-CCA-AAAATG--------T-AATTTT---ACTT-T---AA--TGG--TA----C-A--------GTTA---TCTGAAACCG----TGAA----AG-ATT--T----------A-------------A-AT--A-------------TTC--------T-C-----A--GGTCCGGATCATT----------------------TA---------AA----------AA---CATTTCTCTGAACAG------G-TC-AA---A-A--AAGCCATGTATGGCGTGATAC-GA-A--AA--------------ATTAG-ACAAA--TTTAATTT---T-ACCAGTAG-AATGTCAGCTAG-CCTGTTTG-ATAAAGTTG---T-TT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGGT-TTTCG-AAA--ATCAT-CGATATTATTG--AGCCGT---A-TCAACTT-CAATT-T----------TT----------T---------------A---A---TTTA---------AGG----AAG-T--AGCACTC---A-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-T-TA-TTGTATAAT-AT-GTAACTGTT
gi|30 : TTTGA-CAA------A-GC-CAATAG-ATCGAGCTATGTATGGT-TTATTG-GA-A--AATGCAGAACACATATATAAATAT-AA--TCTAA-TTATTC-ATCCATTG-ATTGTAAACTTGAAATGTTTG-ATAAAGTTG---TAttaca
gi|31 : aATGTATGGAATTATAA-GA-T--AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--TAATTTAC-G-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTATaaacccattatatggatgt
gi|32 : GTATGGAATTATAA-GATAT-AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--T--AATTTCG-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTAT
gi|34 : CA-AAA--ATC-T-TGATATTATTG--AG-CGT---A-TCCACTT-AAATT-TCTAAAATATATT----------T---------------TTA-A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAG--T--T---AT--A---------------TGGT-CGTTTCC------CT-TTGT---AT--T--TAACTGTT
gi|36 : T----------T---------------A---A---TTTA---------A-G----AAA-T--AGTGCAC---C-----AAT--T--T---ATATG-GTTTATGGTGAAACTGGA-CGtatac
gi|4 : taatattcaaaccatatacTAACCTTATTAGTGAAAGTCAAAC-A-GGTTTT-AGAAA-GGGG-TAT---TCTAC-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTTTTTTGTGCCTTCA-TTTA---TTTTAAACAGGCTTTTGACACTGTCTATTGAAATGGGCTGTGGTACAAATTGGTGAAAAATGGTATTAATGGCAAATGTTTTACATTCAT--TAA---AAATATGTATGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AAT-GA-CCAG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGTCAAG-GTGAAAA---------TGTATCTCCTCT-TTTGTTCTC-ACTG-TATATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGACTTTC----T-GTTA-----CTC-CAGTACTCCAAG-CA----A-TAAC-GAAAATA-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-GTA--TTCTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAATCAGCTGACG--G-TTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TC-TT-CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGACTT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGGATCATT----------------------T----------AA----------AA---CATTTATCTGAACAA------G-GT-CA---A-A--AAGCCATGTATGGCGTGATAC-GA-A--AA--------------ATTAG-AC-AA--TTTAA-TT---T-ACCAGTAG-AATGTCAGCTAGACCTGTTTG-ATAAAGTTG---TGTT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGG--TTTCG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-CAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTTatatcctttgt
gi|5 : T---TTTC-------A-TTGCAATGTCCGGGGTCCGTCAAGTGAAAAAAAAAAAAGTGTTTTTCTCCTCT-TTTGTTCTCGACTG-TA-ATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CT-GG-TAAAAAATG-TA-TGT-----GGACTTTC----T-GTTA-----CTCTCAGTACTCCAAG-CA----A-TAAC-GAAA-TA-A-AT---T-TTTAA---CTT---TTTC-TAAGAAGCTTTTTGAT-AGCTCATTCTTATGGCTGGACGATAA-GTT-AT--TA-TCT--TCAAAACTAGCTGACG--GGTTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A----------------A--------ATGTCAATGTT-TGAAAC---------CACA-----AAAATTATGGTT--------T-----TTC-T-C-AA------AA-GTCC-A-TC-TTGCCA-AAA--G--------T-A-TTTT---ACTT-T---AAATTGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAACTTAT----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGGATCATT----------------------G----------TA----------AA---CATTTATCTG-ACAA------G-GT-CA-----A--AAGCCATTTATGGCGT--GTA-GA-ATGAA--------------ATTAG-AC-AAACTTT-A-TT---T-ACCAGAAGAAATGTCA-CTAGACCTGTTTG-ATAAAGTTG---TGTTGGTA---C----TGT--CT--T--TGTAT-A-GTTTGTGAAAGTATGGGG--TTTCGAAAA--ATC-T-CGATATTATTG--AG-CGT---A-TC-ACTT-CAATT-T----------TT----------T---------------TA--A---TTTA---------A-G----AAGTT--AGCACTC---C-----AAA--T--T---ATG-G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-TACA-TTGT---ATAATAGTAACTGTT
gi|6 : --TAA---AAATATGTATGTTGG-GCGTAAAATCATG-TT-ATA-AACGG--AAT-GAATAGG-TTA----TGTCCGTGTGT---TGGGTT---TTTTTTTTTTTACGTGCAATGTG-GGAGTAAGGCAAG-GGGAGAA---------TTTATCTTCCTT-TCTGTTTTC-ATTA-TACATTA---ATGAC--CTTGAAA-C-ATTT-TTA-CA-AGAGAAAGA-GA-TA--GTC----GGGCTT------C-GAAA-----T-----GT-TTCTGAGTCA----A-T--T-GAAAAAG-A-CT---T-AATG----ATT---TACC-TGAAA--CTGTTA-AT-C-CTA--TTGTATA-CTG-ATGGCA--GTT-AT---A-T-TA-GCTGAATCCGCTGAAG--A-TTTA-CA-ACAGGCGTTAAATAAATTCTTCACATATTGTT-----C---AGAGTGGAAATTGAATTA--------ATATTAATA-T-TGAAAA---------AACC-----AAAGTTATGA-T--------T-----TTT-TTC-AA------AGGGTCCTA-TAAT--GAA-GAAATG--------T----TTT---ATTA-C---AA--TGG--AA----A-T--------ATTA---T-TGAGAATG----TTAA----GGAATT--C----------A-------------A-AT--ACTTAAGCATATTATTT--------TCT-----A--GATCAGGCTCTTT----------------------TTACAAAGCCAAA----------AA---CATCTCTGTGAACAA------G-CC-CA---G-A--AAGCTATGTATGGTGTTATAA-GG-A--AA--------------ATCAG-AC-AA--TTTAA-TT---T-ACCAATTA-AATGTCAACTTGATCTGTTTG-ACAAAGT-----CATT-TTAC--C----TGTATTA--A--CTTAT-G-G-GTACGAAA-TTTGGGG--ATACG-AAA--ACT-TACAA-ATTATtttatc
gi|7 : aatttttatttaGGAGTTATTA-GA-A--GA--------------ATAAG-AC-AA--TTTAA-TC---T-ACCTATCG-ACTGCCAGTCAGATTTCCTTG-ATAAAGTTG---TA---ACAC--C----AGT-CTTA-T--TATGT-G-G-TTGTGAAA-TATGGGG--TTATG-AAA--ACC-T-TGAACTTATTA--AA-CGC---ATTCA--TC-TAATT-T----------TT----------T---------------TGAAA---TTTA---------
gi|7 : --AA-CGC---A-TTCACCT-AAATT-T----------TT----------TTTGAAATTTATTCTAT---G---TTTA---------A-A----AAG-T--TGTACTCTTTC-------A--TG-T---AT--G-GTTTATGGGGAGGCAGGT-CGATTCT---------CTTT---AT-AT-GTCATTGTTttctatgtttaaaaagncaaacgcattcacctaaattttttttgaaatttattctatgtttaaaaagttgtactctttcatgtatggtttatggggaggcaggtcgattctctttatatgtcattgtttatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|8 : ggagttattagaagaataagacaatttaatctacctatcgactgccagtcagatttccttgataaagttgtaacaccagtcttattatgtggttgtgaaatatggggttatgaaaaccttgaacttattaaacgcattcatctaatttttttgaaatttattctatgtttaaaaagncaATGGGG--TTATG-AGA--ATA-T-TGATAATATTA--AC-GGTTTCA-TCCACGT-T--TT-T----------TTAACAACATACT---------------T---A---TCTA---------A-A----GAG-T--AGCACGC---C-----AAGCTT--T---AT--G-ATTTAGGGTGAATCTGG----------GA-TACCCTTGT---AT-AT-ACAATTTTTtatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|9 : TCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTA-GA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT---------TTT-GAATTAT----------AT----------T---------------T---GAACTTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-Cacaaaaatgatctcttattgggaaagcttgcagttcaataacaatgacaacaaattgataaagttgtttaatgtttgtatttaacatgcatgaatagggaaaataagaaatccatgaattcatggtttgaaaagtattttggacaatgtgcctctcaaaacattaacacgcagttataacgcaacgtattttaaagtcaagtgttaaccaaaggctatgagattcaattttacaaaaattggcagaaggatatatctatgcttcaaaagggtaattacaaaatttcaaaagaaaatttgaatgtattaatattccacattattaccaagaacggtacgaaaaatctccaatagttttgaactacaaaccatcaccttgctgttgagttaggcagatggaataaaaggatgaacgcttttgatatattatgcaactgtaaccaaattggagatgaatttcattatttttgaatg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTCAAAACTGAATTTGGATTAGAGAAATACCTAAAATGAATAGAACAGTATTTATTTTATTGAATTCAGAACTGCAAATCACCGACTCCCAGTCGAGACTGGAAAATGGTGTGGCACTCCAAAACATGAGAGAATTTGCCATATCTGTAAAACGAATCAAATAGCTGATGAGTATTTATATATACTTTTGAATGCCAGTTTTTTGAAGAGTGGCGAAAAAAATATCTGTGTAAAAATATTGTTTTAAACCAAACTATTATAAATTTTCCGAATTATTGTCAACTGCTGACTCCAATGTACTTGTCAAATTGTGTAGTTTTATATCTAAAATATATGACCAAGTCTGTCCTCCTTGACCTGATATTACTCTGCTTTCATGTGTACATTGTATATTGTTTCAATTTGTATATATTGTTTATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGAACTTG
Unaligned ( gi|12 ): ATATTATTGACATTCAGCATGCAAATCACCGACTCTCCGGTCAAGACTGGCAGATGTTGCGTGGCACTCCAAAACATGAGAGATATTGCCATATCTGATAAAACGAATCAATAGCTGATGAAATAGAGTTTATATTCCTTGAATGCCATTTTTTCGGAAGAATGGCCAAAAATAAAAATAGTCTGATATAAAAAGATTTTTAGGAAACCAAACTATTAAAATTTTCTGAGATTAATTGTCATGGAATGAAATGTACATTTAATCGACTCTTTTATCATTTCCATGATAAAAGTCATCTACTACAAATATGACCAGAATTTTTCCTCCCTTGATTCATCTCAATTCATCTGATTTCTGCTTCTTTCAGGTGACCTTGTACATGTAATATTGTTTCGAATTTGTATATATTGTATATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGGAACTTGA
Unaligned ( gi|17 ): AAAATATCTGTGTAAAAATATTTTTATAAACCAAACTATTGCAAATTTTCTGAATTATTGTCAACTGCTGGACTCCATGTACTTGTCAAAATGTTGTTGGTTTGATATCTAAAATATTTATGGACCAAGTCTGTCTCCTTATTCATCTCAAGTATCTGATAATTTTTACTCTCTGATTTTTCTGTGTATACCTATTGACATTATTTGTTTCACATTTTGTTATATATTGTATTAGTAGAATCATGTACCTTTAGAGTGGGGTTGAGAGAAATAAACTGAACTACT
Unaligned ( gi|20 ): AAAAAAATATTTTAGTCCAAATCTCAGGTGCGAACCATTCCTGTCAAGAAGCGGAAAGTTTGCTTTTAACAGAAGTATATTAAACTTGTATTGAAAGGTCTTTACGCTAGATCATTATTTTTCATGGTTCGTGGTTCGAGCTCTTTATTACTTGTCGGCTAGACGTGATAGATACATGTAAAATCATCAACCCAATCTTATCTTATTTGTGAGATTTCGATTTATTACTGAAAAGGTACACCTAAAATC
Unaligned ( gi|24 ): AGCTGACTCCAATGTACTTGTACAAATTGTGTAGTTTTATGTCTAGTCTGTCCTCCTTGATTCATCTCATTCATCTGATATTACTCTGCTTTTTCATGTGTACCTTGTACATGTATATTGTTTCAATTTGTATATATTGTATATAGAACCTCATGTACATGTACCATTAAGTGGTGTGAGAGAAATAAATAAACTGAAAA
Unaligned ( gi|26 ): AAGAATATCTCACTGGGCAAAACTGCTTTTAAGTCCAGATAGTAAGATTGTGTATGTTTTATATAAGTTTTTATATGATCAATTCTGTGAAAGAAATTTTATGAATTCTTAGCTATCATGTAACAAAATATTTTAGATACTTGTGGGTATTCCCAAC
Unaligned ( gi|27 ): TCCTCCGTAATTCATTTCAATCATCTAAAATGGCTATCATGCTCTTTTCACACCATGTACCTTGTATATATTGTTCCTAACTGTATGAATATACAAGTACTGTAAATAGAACCTCATGTACCATAGCGTGGCATGAGAGAAGTATACTAAAGTTGA
Unaligned ( gi|29 ): TGTAGTTTTTAATATCTTAATACATGAACCTAAGTCTGTCCTCCTTTGAATTCATCTCAAGTGCATTCTGATTCTGCTTTTTTCATGTGTAGCTTTGTAGTATTTTTTTCAGTTGTAATATATTGTATAAGGAACCTCATGGTGGTGCAGAGAA
Unaligned ( gi|33 ): ACTCCCATTCGTGATTGAAAGATGGTATGGCACTCAAAAATGGAAAGGACGTGTCATATCAATGATACATGTAGCGATCATCTAGCCGACGAATATGACTATGTTCTAGATAGCCAGGATTTTG
Unaligned ( gi|35 ): TAAAGATCAGTATATTTACAGAAATGGCAAGTATATTCATGATTCTTTTAATAAGATATACAGTATTTTCAGAAGCCTATTACTTAGGAATGTATATACT
Unaligned ( gi|37 ): CAAATTATTTTAATTCAAATTTTTCGTATCATGGTGAACTGCTGATTCCGGTGAAAGACATGAAATTGTGTAATTTCACAT
Unaligned ( gi|38 ): TCCTGAAATATATTTTATGTATGAAAAGTAGTATACCTTCGTATATGGTTTATGGTGAATCAGGTC
Unaligned ( gi|39 ): CTATATAGAACCTCATGTATCATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACT
Unaligned ( gi|40 ): TGCTTTTTCATGTGTACATAATGTATATTGTTTCAATTTGTATATATTGT
Unaligned ( gi|41 ): AAAGAATTTGCCATATCTGTAAAACTAATCAAAATAGCTG
Unaligned ( gi|42 ): CATTAAGTGGTGTAAGAGAAATAAATTGAACTTGAACTTA
Alignments
lowQualScore : 33333333 111111 222222222 1 1111 1 111 1 1 33333333 11 1 111 1 111 1111 333333333333333333 111 2222222222 222222222 11 111111111 55555555555555555555555555555555555555555555555 3333333333333333 11111 1111 111 5555555555555555555555555555555555555555555555555 222222222 11111 22222222222222 111111 2222222222 111111111111 33333333333333333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111111 11111 11111111111111 11111111 11111111111 11111 111 111111111 6666666666666666666666666666666666666666666666 111111111 222222222222222222222 222222222
lowQualScore : 3 3 77777777 222222 666666666 2 0 5555 0 777 66 0 0 66666666 3 3 33 8 0 9 55 0 0 1 777 44 3 3 0 3 9 1 2 0 8 0 0 11 1 3 6 99999 111 44 6 1 7 6 6 3333 99 7777 22 6 666666666666666666 5 000 3333333333 77 1 0 1 4 1 000000000 0 0 2 6 4 555 66 88888 99 1 4 4 1 4 4 22 4 4 888888888 1 22222222222222222222222222222222222222222222222 0 4 4 777 4 0000000000000000 55 2 4 999 777 1 4 4 0 2 4 77777 77777 0 1 1 1 6666 5 5 6 0 111 9999999999999999999999999999999999999999999999999 1 5 5 0 000000000 22222 1 4 88888888888888 4 4 4 222222 4444444444 4 4 999999999999 777 88888 66 55555555555555555555 777 4 0 9999 9999 66 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 4 00000000000 11111 44 1 1 1 222 2 55 44444444444444 1 2 2 33 5 444 2 22 3 2 1 1 1 2 2 88888888 22222222222 66666 2 2 2222 2 0 55 33 2 33 3 2 7 1 333 2 555555555 33 5 7777777777777777777777777777777777777777777777 666666666 555555 2 444 444444444444444444444 66 44 2 2 4 666666666 888 5 5
lowQualScore : . . ........ ...... ......... . . .... . ... .. . . ........ . . .. . . . .. . . . ... .. . . . . . . . . . . . .. . . . ..... ... .. . . . . . .... .. .... .. . .................. . ... .......... .. . . . . . ......... . . . . . ... .. ..... .. . . . . . . .. . . ......... . ............................................... . . . ... . ................ .. . . ... ... . . . . . . ..... ..... . . . . .... . . . . ... ................................................. . . . . ......... ..... . . .............. . . . ...... .......... . . ............ ... ..... .. .................... ... . . .... .... .. .................................................................................................................................. . . ........... ..... .. . . . ... . .. .............. . . . .. . ... . .. . . . . . . . ........ ........... ..... . . .... . . .. .. . .. . . . . ... . ......... .. . .............................................. ......... ...... . ... ..................... .. .. . . . ......... ... . .
lowQualScore : 2 2 88888888 555555 000000000 5 0 0000 0 555 88 0 0 22222222 2 2 00 8 2 8 00 2 0 0 555 00 2 2 2 5 8 0 5 8 8 2 8 88 0 8 4 88888 777 33 7 0 8 7 7 5555 22 7777 00 7 222222222222222222 7 000 6666666666 55 1 2 0 4 0 000000000 3 5 4 4 0 777 44 22222 55 0 0 0 9 4 4 33 4 4 222222222 0 11111111111111111111111111111111111111111111111 8 0 0 000 0 4444444444444444 55 3 0 222 111 0 4 4 1 0 4 77777 44444 8 0 0 1 1111 0 0 6 7 111 9999999999999999999999999999999999999999999999999 4 0 0 5 000000000 55555 0 4 22222222222222 4 4 4 888888 6666666666 4 6 777777777777 888 22222 11 77777777777777777777 888 4 1 4444 4444 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 0 44444444444 11111 22 0 9 1 777 5 99 77777777777777 0 5 5 44 0 444 5 22 6 7 0 0 8 5 2 88888888 22222222222 99999 2 5 9999 7 6 99 11 4 22 2 4 1 6 222 7 777777777 77 3 9999999999999999999999999999999999999999999999 222222222 888888 7 777 777777777777777777777 33 22 3 7 5 222222222 888 0 7
consensus : TAACCTTATTAGTGAAAGTCGA-C--G-GGTTTTAGAAA-GGGG-TAT---TCTAN-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGTGAANAATGGTATTAATGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGNCTTTC----C-GTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAANCNGCTGACG--G-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TN-T--CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCGT------T-T----------AA----------AA----------------CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-NAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
Reference ( family-1027 ) : TAACCTTATTAGTGAAAGTCGA-C--G-GGTTTTAGAAA-GGGG-TAT---TCTAN-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGTGAANAATGGTATTAATGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGNCTTTC----C-GTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAANCNGCTGACG--G-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TN-T--CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCGT------T-T----------AA----------AA----------------CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-NAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
gi|1 : AATTATGG-T--------T-----TTC-T-C-AA------AAGGTC-------T--TCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----T-A--------GTTA---T-TGAAATCG----TGAA----AGATTT--T----------AGATATCTCGGAATA-AT--A-------------TTT--------TCC-----A--GGCCCGG---ATAAT------T-T----------
gi|1 : ----------------CATTTATCTGAACAA------G-CT-CA---A-A--AAGCCATGTAT-----------------------------------TAG-AC-A---TTCAA-TT---T-ACCAGTAG-AATGTCAGCGAGATTTGTTTG-ATAAGGTTG---T--T-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAGG-TATGAGG--TTTCG-AAA--ATC-T-CGACATTATTT--AG-CGC---A-TCCACTTAAAATT-TCTAAAACATATT----------T---------------TTG-A---TTTA---------A-G----AAG-T--AGCACTC---C-----TAG--TTAT---AT--G-GTCTATGGAGAAACTGGT-TGTTTCC---------CTTT---AT-AT-GTAACAGTTtttagggcaacccccctaaccccccaaccccccatttatctgaacaagctcaaaaagccatgtattagacattcaatttaccagtagaatgtcagcgagatttgtttgataaggttgttgtacctgtacttttgtatggttgtgaggtatgaggtttcgaaaatctcgacattatttagcgcatccacttaaaatttctaaaacatatttttgatttaagaagtagcactcctagttatatggtctatggagaaactggttgtttccctttatatgtaacagtttatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|10 : aattatggttttctcaaaaggtcttcaaaaatgtattttactttaatggtatagttattgaaatcgtgaaagattttagatatctcggaataatattttccaggcccggataattttttagggcaacccccctaaccccccaacccccAAAATG-ATAT---G-TTTG----TTA---TGT--TAAAA--CTTTGT-AT-A-CTC--TTTTATG-CAG-ACGACACTGTT-CTAATA-T-TGATCAGAAACTCCTTCTG--G-TTTA-CA-ACACTCACTCGAT-ATCT--T---------TT-----CCGAG---------------TA--------TTGT-AGTT-TATGGAAACTTGCCGTGAACATAGCTAAAACCATAG-TA-------TTAATATTT-T-C-AA------AAGGCCC---TA-T--GTA-AAACCA--------T-A-GTTT-----TT-T---A--------TA----A-AAGGCTTTTGATA---T-GGAAAATA----AAAA----AAAATT--TTCCTATTTGGG-------------A-AT--A-------------TCC--------CTCTAAAGA--AGT--GG---AAAGT------T-T----------AACAATGCAAAGAA----------------TATTTAACAGAACAA------GCAT-CA-----A--AAGCTCTTTATGGTG-TATTACGT-A--AG--------------ATTCG-TT-AT--TTCAA-TT---TGGCTA--AA-ATTGTCAGTTAGACTTGTTTG-ATAAAG-TA---AAT---CAC--CCAATTTTACTT-------TAC-T-C-TTGTGAAA-TTTGGGG--TTATG-AGA--AAA-T-GGACATTATTGAAAA-AGT---A--CACCTT-AAATT-TG---------TT----------T---------------TA--A---TTTATCTTG----A-ATCTTAAG-TCAAGTACCC---C-----GAA--TTCT---AT--G-GTGTATGGGGAAAGTGGT-tatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|13 : GAAAA---------TTTGTTTCCATT-TTTTTCCTC---TT-TATAGAA---GTGAT--CTAGA-G-A-ATCTTTTA-TT-GGACAAAAA-TA-TA--GT-----GAGTCTCCAAGGC-ATTA-----CTC-C-----TCC-----A----A-TA---GAAAATG-A-AT---T-GTT------TT---GTACATGAAA--CTATTT-AT-G-TTG--TTTTATA-CTG-ATGATGCTGTA-AT--TA-T-A--GCTGAGACTGCAGATG--A-TCTATCA-AT-TGTAATCAATG---T--ACG-------TT---------A---------------TA--------A-GTCAATA-C-TGACAA---------AACT-----AAAATATTGA-T--------A-----TTC-T-CTAG------AGGGTCT-A-TG----CCACAGAATGGTTTTTTTT-T-TCTT---ACTA-T---AA--CG---------A-C--------GTTACAGT-AGAAACTA----TGAA----AGATTT--T----------A-------------A-AT--A--------------CC--------TCT-----AATAGTT------GTTGT------C-T------------------------------------------TTTCT-TCAACAAAAAACGG-ACACA---G-A--AAACAATTTGAAGTGTAATCA-TA-A--AA--------------ATTAG-AC-GG--TTTAA-TT---T-ACCAGTagatatccattgtcaattaatgtgattt
gi|14 : ---------------TA--------TTGTGAATA-T-TAGTGA---------AACA-----AAAATTGTAG-TACGTGTAGT-----TTC-T-A-AAGGTTTGATGGTCG-A-CA-T--CCC-AAA-TG--------TTC-TTTC---ACTCAC---AA--TG---TA----TTA--------TTTG---T-TGAAACAGGCAATGAATCCAAGTATT--T----------ACG-----------A-AT--AGTT----------TTA--------TCA-----A--AATCTGGTTCATTGTGTAACGT-T----------AA----------AAAAACCAAATAAAAACCCGCCTCTGTGAGCAA------A-CA-CA---G-A--AAGCTGTATTTGGAGCCATTA--A-T--AA--------------ATAAG-AT-TA--TTTGG-TC---T-ACCATTTC-ACTGTCAGtca
gi|15 : gaaactgtttatgttatttgatacagatgacagtaattttagtagagtctgcaaaagatttgtaggtagcgttgggtgaatttagaagctactgtaaagtatggaaactAACCTTTCTAATGAAAG-----------GTTTTAGAAA-AAAAATATGCATCTATATATAGACCATA-TTTCA--GCTTT-G---CATTTTTTTA-TAGCATACTCTTCT-TACT-CTGTAGTAA-AAAGAGCAATCATGTTGTG---TTG-TTGAAGATTTTAAGCAGGGTTTTGATACAGCCTGGAGAAATGATCTTTGGTATAAGCTACTAGATAATGGGATTAAGGGGAAATGTTATAC-TT--T--TAAGGCAAATGTTTATAAAGG-AATCAAATCTAAG-ATAAGT-A--TA--AAT-GG-TGTA-TCA----T---------CAGATTAATT---CTT----------TGGTAATTTC-GGAGTTCACGACG-GTG-AAA---------TTTATCGCC-CT--------TC-ACTC-TATATAGTTTATAGT--TTGGAAG-A-GTtatcatttat
gi|16 : tc----------AA----------------CATCTCTGTGAACA-------G-GC-TA---G-A--AAGCAATGTA-GGAGTTATAG-TA-A--GA--------------ATAAG-AC-AA--TTTAAGTC---T-ACCTAT-G-ACTG-CAGC-AGATGTTCTTGTATAAA---G---TGTT-AAAC--C----AGTCATA--T--TCAAT-GTG-TTGTGAAA-T-T--GG--TTATG-AAA----C-T-TG--ACTAGTA--AA-CGC---ATTCA---T-TAATT-T----------TT----------T---------------TGAAA---TTTATCTATGTTTA-A----AAG-T---GTACTCTTTC-----ATG--T--G---AT--GTTTTTATGG-GAGGCCGGT-CGTTTCT--T-TATA-T
gi|18 : AATGATA--GATGGAAAATGTTTCAAGGTCAT--AAA---AAATCTTTACAATGG-TATTAAATCAAAGAGT-GTC-A--TGTAGAT--A-TTGG-TCAATATT---------C---AGACTTCTGTTTC-------CA-TGTAACGTC-GCAGTTAGACAAG-GGGAAAA---------CCTGTCACCTTTCTTTGTTGGC-AGTA-TATTTGA---ATGATGCTTTGAAGAA-ATTTACTG-TT-TT-TAATAA-TG-----GTTCAACGGTCTTTC----A-AT-------CTT----TATTGTGAG-AA----A-TTAG-GAAAATG-A-ATGAATGTTTA------------TT-TAAGA--TTGTTT-GT-G-CTgtccatttgtttatactagatggttcataactgggaaagtgtttctcaggtcagaaacaaaacgcatatatttat
gi|19 : A----------AA----------------GACTTATTT-AACAA------A-TC-CA---ATA--GAGCTATGTATGGTGTTATTG-GA-A--AA--------------TGCAG-AA-AA--CATAA-TC---T-ATCCATAA-ATTGTAAATTCGATATCTTTG-ATAAAGTTG---TA---AAAC--C----CATTCTT--C--TATAT-G-G-ATGTG
gi|2 : tttacttcaattctgaatgaaggacttaataaatatgcaaatagagttgaattgattctggaaaaaaaaattcaaaaatatttgggtgttacttttagaaaaagtggttcatataacctaaatatcAGTCGA-G--GTGGTTTTAGGAA-GCTA-TAT---G--AA-CATAGACAAAAATATTACAATTTTCGTTTCATTTT--TA-TGA-ACA------A-GAAAAC-------------AAAAATTAGTTTGCGCATTAG-TAGA---TTTCAAACAAGC----------GTATGT---AATGGTTTGTGGAGCAGGGTAGCTAAGAATCGTATAAACTGTAAATGATT---GTTTGTGTCAA---AAATATGTAC-ACGGTAATTAAATAAA-G-AT-AGT-A--TG--GAT-GG-TGTA-TCT----T---------C---TGA-TT---TGTC-------AGTTGTGATGTA-GGTGTGCGGCAAG-GCAAAAA---------TCTGTC-CCTAA-TGTATTCTT-TTTC-GATATTA---ATAAC--CCGGCC--A-ATATCT-G-TT-AG---AAAA-CG-TA-TA--------CCTAT-------GTTA-----C-A-AAGTATTAC-AG-AATCTTA-TAATAGAGGATG-G-AA---T-TTTA----TGT---ATT--TAAAA--CTCTGT-GTTC-CTT--TTTTATG-CCG-TTCATACTGTC-AT--TC-T-G--ACAGAAACTCCTGATATAA-TTTA-CA-GAATACTTT----GA-TT--ATA-------TTGTGAAC---AA--------------TAGAAAAGAAACGCCGATG-T-GGGTAA---------ATCA-----AAAAT-ATAG-T--------G-----TTT-T-A-GA------AAGGCCC-AATG-G--TAA-AAAAT---------C-A-TTTTCACACGT-CCTAAA--CAGAATACAACA-ACATT----GTCA---T-AGAAAATG----TAAA----ATAATT--T----------G-------------ATACCCA-------------TTCATTGTGTTTCT-----C--GCTCAGG---TTCTT------TCT----------A-----------------------------CATATCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTA-GA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT---------TTT-GAATTAT----------AT----------T---------------T---GAACTTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-C
gi|21 : TGTCAACTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G------TGATG-TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TAT---G-TTAATTT-AAAAT-T----------TC----------T--------------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-aattatgttcatactaaaactgtttcataatcccaggtccaaaaaactaaattttgttcattttataaatctattt
gi|22 : TGTCA-CTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G---TTATG----TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TAT---G-TTAATTT-AAAAT-T----------TC----------T--------------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-gcaaggtttacatgagaatgactgcatactgggtaaaattcgtaaatccggcaaatgaaactgtacatagcaatatatacatgtatt
gi|23 : aCGACAGG-GGGAAAAA--------TCTGTCCCCCCT-TTTATTTT--ACTT-TTTATCA---ATGATC-TTAGAAG-A-TTTTTTTG-ATAGA-GAAAAA-TGTTA-TGT-----GGTCTTTC---------A---------CAAT----TGAA-CAGT--G-TATT-GAGGACG-A-AC---T-TTTG-----TA---TTTT-TGAAA--TTTTTT-AT-C-CTG--TTATATG-CTG-AT-ATACAGTT-AT--T--T-G--TCTGAAAATGCTACTG--A-TTTA-CA-gcaaggtttacatgagatgactgcatactgggtaaaaattcgtaaatccggcaatgaaactgtaca
gi|25 : TCGTAATATC-GGAGTCCGTCAAG-GAGAAAT---------TTTATCTCC-------ATTTTC-A---------------------TTAGAAA-A-ATGTCCTG-CT-GA-TAGAAA-TA-TA--GT-----CGG-----------GTTATAGAGCTT-AATTACT----G-CA----A-TA---GAAAATGTA-AT---G-TGTAGGAACTCGAATTGC-CAGA-----------T-A-CTT--TTGTATG-CTG-ATAGTACTGCA-AT--Tatagtgtagcatta
gi|28 : ttcttAAACCTA---TATA-GTAC--T----TGTACCTG-T--TAAAT-G-G-GTGTGAAA-TATTGGGATTTA-G-AAGTTATT-T-AGATGTTATC------TGT---A---AGCTT-CAAT---------------------------------------------AAAGTTTA---------A-A----AAA-T--CG-ACGC---C-----AAAGGT--T---AT--G-GTTTATGGGGAATTAGGTGTGTATCCGAT-GTCA-GTGT---AT-A
gi|3 : TAACCTTATTAGTGAA-GTCAA-CCAG-GTTTTTAGAAAAGGGG-TAT---TCTAACTACAGA-AATA-TATTA--A-TTT-G---CATTTTCCTAACAA-ATA------TTGACAACTGT-TTAACAAAAAGAAACT-TTTTGTGCCTTCAATTTA---TTTTA--C-GGCTTTTGACACTGTCTATTGAAATGGGCTGTG-TACAAATTG-TGAA-AATGGTATTAATGGCAAATGTTTTACATTCCT--TAA---AAATATGTTTGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AATCGA-CCAGCTCA----T---------C---TGAATT---TT-C-------AATTGCA-TGT--GGGGTCCCGCAAG-GTGAAA----------TGTATCTC-TCT-TTTGTTCTC-ACTTGTATAT-A---ATGAT--TTCGAAG-AGATTTCTTGGCT-GG-TAAAA--TG-TAATGT-----GGACTTTC----TTGTTA-----CTC-CAGTAACTCAAG-CA----ACTAAC-GAAA-TA-A-AT---T-TTTA----CTT---TT-C-TAAAA--CTTTTT-AT-A-GTA--TTCTATG-CTG-ACGATACTTTTTAT--TAAT-T--TCAGA-TCAG-TGACG----TTTG-CAAGCATGC-CTCAAT-AGTT--TCA-------TT-----C---A---------------TA--------ATGTCA-TG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTCCT-C-AA------AAGGTCC-A-TC-TT-CCA-AAAATG--------T-AATTTT---ACTT-T---AA--TGG--TA----C-A--------GTTA---TCTGAAACCG----TGAA----AG-ATT--T----------A-------------A-AT--A-------------TTC--------T-C-----A--GGTCCGG---ATCAT------T-TA---------AA----------AA----------------CATTTCTCTGAACAG------G-TC-AA---A-A--AAGCCATGTATGGCGTGATAC-GA-A--AA--------------ATTAG-ACAAA--TTTAATTT---T-ACCAGTAG-AATGTCAGCTAG-CCTGTTTG-ATAAAGTTG---T-TT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGGT-TTTCG-AAA--ATCAT-CGATATTATTG--AGCCGT---A-TCAACTT-CAATT-T----------TT----------T---------------A---A---TTTA---------AGG----AAG-T--AGCACTC---A-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-T-TA-TTGTATAAT-AT-GTAACTGTT
gi|30 : TTTGA-CAA------A-GC-CAATAG-ATCGAGCTATGTATGGT-TTATTG-GA-A--AATGCAGAACACATATATAAATAT-AA--TCTAA-TTATTC-ATCCATTG-ATTGTAAACTTGAAATGTTTG-ATAAAGTTG---TAttaca
gi|31 : aATGTATGGAATTATAA-GA-T--AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--TAATTTAC-G-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTATaaacccattatatggatgt
gi|32 : GTATGGAATTATAA-GATAT-AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--T--AATTTCG-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTAT
gi|34 : CA-AAA--ATC-T-TGATATTATTG--AG-CGT---A-TCCACTT-AAATT-TCTAAAATATATT----------T---------------TTA-A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAG--T--T---AT--A---------------TGGT-CGTTTCC------CT-TTGT---AT--T--TAACTGTT
gi|36 : T----------T---------------A---A---TTTA---------A-G----AAA-T--AGTGCAC---C-----AAT--T--T---ATATG-GTTTATGGTGAAACTGGA-CGtatac
gi|4 : taatattcaaaccatatacTAACCTTATTAGTGAAAGTCAAAC--A-GGTTTTAGAAA-GGGG-TAT---TCTAC-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTTTTTTGTGCCTTCA-TTTA---TTTTAAACAGGCTTTTGACACTGTCTATTGAAATGGGCTGTGGTACAAATTGGTGAAAAATGGTATTAATGGCAAATGTTTTACATTCAT--TAA---AAATATGTATGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AAT-GA-CCAG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGTCAAG-GTGAAAA---------TGTATCTCCTCT-TTTGTTCTC-ACTG-TATATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGACTTTC----T-GTTA-----CTC-CAGTACTCCAAG-CA----A-TAAC-GAAAATA-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-GTA--TTCTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAATCAGCTGACG--G-TTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TC-TT-CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGACTT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCAT------T-T----------AA----------AA----------------CATTTATCTGAACAA------G-GT-CA---A-A--AAGCCATGTATGGCGTGATAC-GA-A--AA--------------ATTAG-AC-AA--TTTAA-TT---T-ACCAGTAG-AATGTCAGCTAGACCTGTTTG-ATAAAGTTG---TGTT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGG--TTTCG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-CAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTTatatcctttgt
gi|5 : T---TTTC-------A-TTGCAATGTCCGGGGTCCGTCAAGTGAAAAAAAAAAAAGTGTTTTTCTCCTCT-TTTGTTCTCGACTG-TA-ATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CT-GG-TAAAAAATG-TA-TGT-----GGACTTTC----T-GTTA-----CTCTCAGTACTCCAAG-CA----A-TAAC-GAAA-TA-A-AT---T-TTTAA---CTT---TTTC-TAAGAAGCTTTTTGAT-AGCTCATTCTTATGGCTGGACGATAA-GTT-AT--TA-TCT--TCAAAACTAGCTGACG--GGTTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A----------------A--------ATGTCAATGTT-TGAAAC---------CACA-----AAAATTATGGTT--------T-----TTC-T-C-AA------AA-GTCC-A-TC-TTGCCA-AAA--G--------T-A-TTTT---ACTT-T---AAATTGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAACTTAT----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCAT------T-G----------TA----------AA----------------CATTTATCTG-ACAA------G-GT-CA-----A--AAGCCATTTATGGCGT--GTA-GA-ATGAA--------------ATTAG-AC-AAACTTT-A-TT---T-ACCAGAAGAAATGTCA-CTAGACCTGTTTG-ATAAAGTTG---TGTTGGTA---C----TGT--CT--T--TGTAT-A-GTTTGTGAAAGTATGGGG--TTTCGAAAA--ATC-T-CGATATTATTG--AG-CGT---A-TC-ACTT-CAATT-T----------TT----------T---------------TA--A---TTTA---------A-G----AAGTT--AGCACTC---C-----AAA--T--T---ATG-G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-TACA-TTGT---ATAATAGTAACTGTT
gi|6 : --TAA---AAATATGTATGTTGG-GCGTAAAATCATG-TT-ATA-AACGG--AAT-GAATAGG-TTA----TGTCCGTGTGT---TGGGTT---TTTTTTTTTTTACGTGCAATGTG-GGAGTAAGGCAAG-GGGAGAA---------TTTATCTTCCTT-TCTGTTTTC-ATTA-TACATTA---ATGAC--CTTGAAA-C-ATTT-TTA-CA-AGAGAAAGA-GA-TA--GTC----GGGCTT------C-GAAA-----T-----GT-TTCTGAGTCA----A-T--T-GAAAAAG-A-CT---T-AATG----ATT---TACC-TGAAA--CTGTTA-AT-C-CTA--TTGTATA-CTG-ATGGCA--GTT-AT---A-T-TA-GCTGAATCCGCTGAAG--A-TTTA-CA-ACAGGCGTTAAATAAATTCTTCACATATTGTT-----C---AGAGTGGAAATTGAATTA--------ATATTAATA-T-TGAAAA---------AACC-----AAAGTTATGA-T--------T-----TTT-TTC-AA------AGGGTCCTA-TAAT--GAA-GAAATG--------T----TTT---ATTA-C---AA--TGG--AA----A-T--------ATTA---T-TGAGAATG----TTAA----GGAATT--C----------A-------------A-AT--ACTTAAGCATATTATTT--------TCT-----A--GATCAGG---CTCTT------T-TTACAAAGCCAAA----------AA----------------CATCTCTGTGAACAA------G-CC-CA---G-A--AAGCTATGTATGGTGTTATAA-GG-A--AA--------------ATCAG-AC-AA--TTTAA-TT---T-ACCAATTA-AATGTCAACTTGATCTGTTTG-ACAAAGT-----CATT-TTAC--C----TGTATTA--A--CTTAT-G-G-GTACGAAA-TTTGGGG--ATACG-AAA--ACT-TACAA-ATTATtttatc
gi|7 : aatttttatttaGGAGTTATTA-GA-A--GA--------------ATAAG-AC-AA--TTTAA-TC---T-ACCTATCG-ACTGCCAGTCAGATTTCCTTG-ATAAAGTTG---TA---ACAC--C----AGT-CTTA-T--TATGT-G-G-TTGTGAAA-TATGGGG--TTATG-AAA--ACC-T-TGAACTTATTA--AA-CGC---ATTCA--TC-TAATT-T----------TT----------T---------------TGAAA---TTTA---------
gi|7 : --AA-CGC---A-TTCACCT-AAATT-T----------TT----------TTTGAAATTTATTCTAT---G---TTTA---------A-A----AAG-T--TGTACTCTTTC-------A--TG-T---AT--G-GTTTATGGGGAGGCAGGT-CGATTCT---------CTTT---AT-AT-GTCATTGTTttctatgtttaaaaagncaaacgcattcacctaaattttttttgaaatttattctatgtttaaaaagttgtactctttcatgtatggtttatggggaggcaggtcgattctctttatatgtcattgtttatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|8 : ggagttattagaagaataagacaatttaatctacctatcgactgccagtcagatttccttgataaagttgtaacaccagtcttattatgtggttgtgaaatatggggttatgaaaaccttgaacttattaaacgcattcatctaatttttttgaaatttattctatgtttaaaaagncaATGGGG--TTATG-AGA--ATA-T-TGATAATATTA--AC-GGTTTCA-TCCACGT-T--TT-T----------TTAACAACATACT---------------T---A---TCTA---------A-A----GAG-T--AGCACGC---C-----AAGCTT--T---AT--G-ATTTAGGGTGAATCTGG----------GA-TACCCTTGT---AT-AT-ACAATTTTTtatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|9 : TCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTA-GA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT---------TTT-GAATTAT----------AT----------T---------------T---GAACTTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-Cacaaaaatgatctcttattgggaaagcttgcagttcaataacaatgacaacaaattgataaagttgtttaatgtttgtatttaacatgcatgaatagggaaaataagaaatccatgaattcatggtttgaaaagtattttggacaatgtgcctctcaaaacattaacacgcagttataacgcaacgtattttaaagtcaagtgttaaccaaaggctatgagattcaattttacaaaaattggcagaaggatatatctatgcttcaaaagggtaattacaaaatttcaaaagaaaatttgaatgtattaatattccacattattaccaagaacggtacgaaaaatctccaatagttttgaactacaaaccatcaccttgctgttgagttaggcagatggaataaaaggatgaacgcttttgatatattatgcaactgtaaccaaattggagatgaatttcattatttttgaatg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTCAAAACTGAATTTGGATTAGAGAAATACCTAAAATGAATAGAACAGTATTTATTTTATTGAATTCAGAACTGCAAATCACCGACTCCCAGTCGAGACTGGAAAATGGTGTGGCACTCCAAAACATGAGAGAATTTGCCATATCTGTAAAACGAATCAAATAGCTGATGAGTATTTATATATACTTTTGAATGCCAGTTTTTTGAAGAGTGGCGAAAAAAATATCTGTGTAAAAATATTGTTTTAAACCAAACTATTATAAATTTTCCGAATTATTGTCAACTGCTGACTCCAATGTACTTGTCAAATTGTGTAGTTTTATATCTAAAATATATGACCAAGTCTGTCCTCCTTGACCTGATATTACTCTGCTTTCATGTGTACATTGTATATTGTTTCAATTTGTATATATTGTTTATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGAACTTG
Unaligned ( gi|12 ): ATATTATTGACATTCAGCATGCAAATCACCGACTCTCCGGTCAAGACTGGCAGATGTTGCGTGGCACTCCAAAACATGAGAGATATTGCCATATCTGATAAAACGAATCAATAGCTGATGAAATAGAGTTTATATTCCTTGAATGCCATTTTTTCGGAAGAATGGCCAAAAATAAAAATAGTCTGATATAAAAAGATTTTTAGGAAACCAAACTATTAAAATTTTCTGAGATTAATTGTCATGGAATGAAATGTACATTTAATCGACTCTTTTATCATTTCCATGATAAAAGTCATCTACTACAAATATGACCAGAATTTTTCCTCCCTTGATTCATCTCAATTCATCTGATTTCTGCTTCTTTCAGGTGACCTTGTACATGTAATATTGTTTCGAATTTGTATATATTGTATATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGGAACTTGA
Unaligned ( gi|17 ): AAAATATCTGTGTAAAAATATTTTTATAAACCAAACTATTGCAAATTTTCTGAATTATTGTCAACTGCTGGACTCCATGTACTTGTCAAAATGTTGTTGGTTTGATATCTAAAATATTTATGGACCAAGTCTGTCTCCTTATTCATCTCAAGTATCTGATAATTTTTACTCTCTGATTTTTCTGTGTATACCTATTGACATTATTTGTTTCACATTTTGTTATATATTGTATTAGTAGAATCATGTACCTTTAGAGTGGGGTTGAGAGAAATAAACTGAACTACT
Unaligned ( gi|20 ): AAAAAAATATTTTAGTCCAAATCTCAGGTGCGAACCATTCCTGTCAAGAAGCGGAAAGTTTGCTTTTAACAGAAGTATATTAAACTTGTATTGAAAGGTCTTTACGCTAGATCATTATTTTTCATGGTTCGTGGTTCGAGCTCTTTATTACTTGTCGGCTAGACGTGATAGATACATGTAAAATCATCAACCCAATCTTATCTTATTTGTGAGATTTCGATTTATTACTGAAAAGGTACACCTAAAATC
Unaligned ( gi|24 ): AGCTGACTCCAATGTACTTGTACAAATTGTGTAGTTTTATGTCTAGTCTGTCCTCCTTGATTCATCTCATTCATCTGATATTACTCTGCTTTTTCATGTGTACCTTGTACATGTATATTGTTTCAATTTGTATATATTGTATATAGAACCTCATGTACATGTACCATTAAGTGGTGTGAGAGAAATAAATAAACTGAAAA
Unaligned ( gi|26 ): AAGAATATCTCACTGGGCAAAACTGCTTTTAAGTCCAGATAGTAAGATTGTGTATGTTTTATATAAGTTTTTATATGATCAATTCTGTGAAAGAAATTTTATGAATTCTTAGCTATCATGTAACAAAATATTTTAGATACTTGTGGGTATTCCCAAC
Unaligned ( gi|27 ): TCCTCCGTAATTCATTTCAATCATCTAAAATGGCTATCATGCTCTTTTCACACCATGTACCTTGTATATATTGTTCCTAACTGTATGAATATACAAGTACTGTAAATAGAACCTCATGTACCATAGCGTGGCATGAGAGAAGTATACTAAAGTTGA
Unaligned ( gi|29 ): TGTAGTTTTTAATATCTTAATACATGAACCTAAGTCTGTCCTCCTTTGAATTCATCTCAAGTGCATTCTGATTCTGCTTTTTTCATGTGTAGCTTTGTAGTATTTTTTTCAGTTGTAATATATTGTATAAGGAACCTCATGGTGGTGCAGAGAA
Unaligned ( gi|33 ): ACTCCCATTCGTGATTGAAAGATGGTATGGCACTCAAAAATGGAAAGGACGTGTCATATCAATGATACATGTAGCGATCATCTAGCCGACGAATATGACTATGTTCTAGATAGCCAGGATTTTG
Unaligned ( gi|35 ): TAAAGATCAGTATATTTACAGAAATGGCAAGTATATTCATGATTCTTTTAATAAGATATACAGTATTTTCAGAAGCCTATTACTTAGGAATGTATATACT
Unaligned ( gi|37 ): CAAATTATTTTAATTCAAATTTTTCGTATCATGGTGAACTGCTGATTCCGGTGAAAGACATGAAATTGTGTAATTTCACAT
Unaligned ( gi|38 ): TCCTGAAATATATTTTATGTATGAAAAGTAGTATACCTTCGTATATGGTTTATGGTGAATCAGGTC
Unaligned ( gi|39 ): CTATATAGAACCTCATGTATCATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACT
Unaligned ( gi|40 ): TGCTTTTTCATGTGTACATAATGTATATTGTTTCAATTTGTATATATTGT
Unaligned ( gi|41 ): AAAGAATTTGCCATATCTGTAAAACTAATCAAAATAGCTG
Unaligned ( gi|42 ): CATTAAGTGGTGTAAGAGAAATAAATTGAACTTGAACTTA
Alignments
lowQualScore : 33333333 111111 222222222 1 1111 1 111 1 1 33333333 11 1 111 1 111 1111 333333333333333333 111 2222222222 222222222 11 111111111 55555555555555555555555555555555555555555555555 3333333333333333 11111 1111 111 5555555555555555555555555555555555555555555555555 222222222 11111 22222222222222 111111 2222222222 111111111111 33333333333333333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111111 11111 11111111111111 11111111 11111111111 11111 111 111111111 6666666666666666666666666666666666666666666666 111111111 222222222222222222222 222222222
lowQualScore : 3 3 77777777 222222 666666666 2 0 5555 0 777 66 0 0 66666666 3 3 33 8 0 9 55 0 0 1 777 44 3 3 0 3 9 1 2 0 8 0 0 11 1 3 6 99999 111 44 6 1 7 6 6 3333 99 7777 22 6 666666666666666666 5 000 3333333333 77 1 0 1 4 1 000000000 0 0 2 6 4 555 66 88888 99 1 4 4 1 4 4 22 4 4 888888888 1 22222222222222222222222222222222222222222222222 0 4 4 777 4 0000000000000000 55 2 4 999 777 1 4 4 0 2 4 77777 77777 0 1 1 1 6666 5 5 6 0 111 9999999999999999999999999999999999999999999999999 1 5 5 0 000000000 22222 1 4 88888888888888 4 4 4 222222 4444444444 4 4 999999999999 777 88888 66 55555555555555555555 777 4 0 9999 9999 66 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 4 00000000000 11111 44 1 1 1 222 2 55 44444444444444 1 2 2 33 5 444 2 22 3 2 1 1 1 2 2 88888888 22222222222 66666 2 2 2222 2 0 55 33 2 33 3 2 7 1 333 2 555555555 33 5 7777777777777777777777777777777777777777777777 666666666 555555 2 444 444444444444444444444 66 44 2 2 4 666666666 888 5 5
lowQualScore : . . ........ ...... ......... . . .... . ... .. . . ........ . . .. . . . .. . . . ... .. . . . . . . . . . . . .. . . . ..... ... .. . . . . . .... .. .... .. . .................. . ... .......... .. . . . . . ......... . . . . . ... .. ..... .. . . . . . . .. . . ......... . ............................................... . . . ... . ................ .. . . ... ... . . . . . . ..... ..... . . . . .... . . . . ... ................................................. . . . . ......... ..... . . .............. . . . ...... .......... . . ............ ... ..... .. .................... ... . . .... .... .. .................................................................................................................................. . . ........... ..... .. . . . ... . .. .............. . . . .. . ... . .. . . . . . . . ........ ........... ..... . . .... . . .. .. . .. . . . . ... . ......... .. . .............................................. ......... ...... . ... ..................... .. .. . . . ......... ... . .
lowQualScore : 2 2 88888888 555555 000000000 5 0 0000 0 555 88 0 0 22222222 2 2 00 8 2 8 00 2 0 0 555 00 2 2 2 5 8 0 5 8 8 2 8 88 0 8 4 88888 777 33 7 0 8 7 7 5555 22 7777 00 7 222222222222222222 7 000 6666666666 55 1 2 0 4 0 000000000 3 5 4 4 0 777 44 22222 55 0 0 0 9 4 4 33 4 4 222222222 0 11111111111111111111111111111111111111111111111 8 0 0 000 0 4444444444444444 55 3 0 222 111 0 4 4 1 0 4 77777 44444 8 0 0 1 1111 0 0 6 7 111 9999999999999999999999999999999999999999999999999 4 0 0 5 000000000 55555 0 4 22222222222222 4 4 4 888888 6666666666 4 6 777777777777 888 22222 11 77777777777777777777 888 4 1 4444 4444 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 0 44444444444 11111 22 0 9 1 777 5 99 77777777777777 0 5 5 44 0 444 5 22 6 7 0 0 8 5 2 88888888 22222222222 99999 2 5 9999 7 6 99 11 4 22 2 4 1 6 222 7 777777777 77 3 9999999999999999999999999999999999999999999999 222222222 888888 7 777 777777777777777777777 33 22 3 7 5 222222222 888 0 7
consensus : TAACCTTATTAGTGAAAGTCGA-C--G-GGTTTTAGAAA-GGGG-TAT---TCTAN-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGTGAANAATGGTATTAATGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGNCTTTC----C-GTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAANCNGCTGACG--G-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TN-T--CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCGT------T-T----------AA----------AA----------------CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-NAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
Reference ( family-1027 ) : TAACCTTATTAGTGAAAGTCGA-C--G-GGTTTTAGAAA-GGGG-TAT---TCTAN-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGTGAANAATGGTATTAATGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGNCTTTC----C-GTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAANCNGCTGACG--G-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TN-T--CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCGT------T-T----------AA----------AA----------------CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-NAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
gi|1 : AATTATGG-T--------T-----TTC-T-C-AA------AAGGTC-------T--TCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----T-A--------GTTA---T-TGAAATCG----TGAA----AGATTT--T----------AGATATCTCGGAATA-AT--A-------------TTT--------TCC-----A--GGCCCGG---ATAAT------T-T----------
gi|1 : ----------------CATTTATCTGAACAA------G-CT-CA---A-A--AAGCCATGTAT-----------------------------------TAG-AC-A---TTCAA-TT---T-ACCAGTAG-AATGTCAGCGAGATTTGTTTG-ATAAGGTTG---T--T-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAGG-TATGAGG--TTTCG-AAA--ATC-T-CGACATTATTT--AG-CGC---A-TCCACTTAAAATT-TCTAAAACATATT----------T---------------TTG-A---TTTA---------A-G----AAG-T--AGCACTC---C-----TAG--TTAT---AT--G-GTCTATGGAGAAACTGGT-TGTTTCC---------CTTT---AT-AT-GTAACAGTTtttagggcaacccccctaaccccccaaccccccatttatctgaacaagctcaaaaagccatgtattagacattcaatttaccagtagaatgtcagcgagatttgtttgataaggttgttgtacctgtacttttgtatggttgtgaggtatgaggtttcgaaaatctcgacattatttagcgcatccacttaaaatttctaaaacatatttttgatttaagaagtagcactcctagttatatggtctatggagaaactggttgtttccctttatatgtaacagtttatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|10 : aattatggttttctcaaaaggtcttcaaaaatgtattttactttaatggtatagttattgaaatcgtgaaagattttagatatctcggaataatattttccaggcccggataattttttagggcaacccccctaaccccccaacccccAAAATG-ATAT---G-TTTG----TTA---TGT--TAAAA--CTTTGT-AT-A-CTC--TTTTATG-CAG-ACGACACTGTT-CTAATA-T-TGATCAGAAACTCCTTCTG--G-TTTA-CA-ACACTCACTCGAT-ATCT--T---------TT-----CCGAG---------------TA--------TTGT-AGTT-TATGGAAACTTGCCGTGAACATAGCTAAAACCATAG-TA-------TTAATATTT-T-C-AA------AAGGCCC---TA-T--GTA-AAACCA--------T-A-GTTT-----TT-T---A--------TA----A-AAGGCTTTTGATA---T-GGAAAATA----AAAA----AAAATT--TTCCTATTTGGG-------------A-AT--A-------------TCC--------CTCTAAAGA--AGT--GG---AAAGT------T-T----------AACAATGCAAAGAA----------------TATTTAACAGAACAA------GCAT-CA-----A--AAGCTCTTTATGGTG-TATTACGT-A--AG--------------ATTCG-TT-AT--TTCAA-TT---TGGCTA--AA-ATTGTCAGTTAGACTTGTTTG-ATAAAG-TA---AAT---CAC--CCAATTTTACTT-------TAC-T-C-TTGTGAAA-TTTGGGG--TTATG-AGA--AAA-T-GGACATTATTGAAAA-AGT---A--CACCTT-AAATT-TG---------TT----------T---------------TA--A---TTTATCTTG----A-ATCTTAAG-TCAAGTACCC---C-----GAA--TTCT---AT--G-GTGTATGGGGAAAGTGGT-tatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|13 : GAAAA---------TTTGTTTCCATT-TTTTTCCTC---TT-TATAGAA---GTGAT--CTAGA-G-A-ATCTTTTA-TT-GGACAAAAA-TA-TA--GT-----GAGTCTCCAAGGC-ATTA-----CTC-C-----TCC-----A----A-TA---GAAAATG-A-AT---T-GTT------TT---GTACATGAAA--CTATTT-AT-G-TTG--TTTTATA-CTG-ATGATGCTGTA-AT--TA-T-A--GCTGAGACTGCAGATG--A-TCTATCA-AT-TGTAATCAATG---T--ACG-------TT---------A---------------TA--------A-GTCAATA-C-TGACAA---------AACT-----AAAATATTGA-T--------A-----TTC-T-CTAG------AGGGTCT-A-TG----CCACAGAATGGTTTTTTTT-T-TCTT---ACTA-T---AA--CG---------A-C--------GTTACAGT-AGAAACTA----TGAA----AGATTT--T----------A-------------A-AT--A--------------CC--------TCT-----AATAGTT------GTTGT------C-T------------------------------------------TTTCT-TCAACAAAAAACGG-ACACA---G-A--AAACAATTTGAAGTGTAATCA-TA-A--AA--------------ATTAG-AC-GG--TTTAA-TT---T-ACCAGTagatatccattgtcaattaatgtgattt
gi|14 : ---------------TA--------TTGTGAATA-T-TAGTGA---------AACA-----AAAATTGTAG-TACGTGTAGT-----TTC-T-A-AAGGTTTGATGGTCG-A-CA-T--CCC-AAA-TG--------TTC-TTTC---ACTCAC---AA--TG---TA----TTA--------TTTG---T-TGAAACAGGCAATGAATCCAAGTATT--T----------ACG-----------A-AT--AGTT----------TTA--------TCA-----A--AATCTGGTTCATTGTGTAACGT-T----------AA----------AAAAACCAAATAAAAACCCGCCTCTGTGAGCAA------A-CA-CA---G-A--AAGCTGTATTTGGAGCCATTA--A-T--AA--------------ATAAG-AT-TA--TTTGG-TC---T-ACCATTTC-ACTGTCAGtca
gi|15 : gaaactgtttatgttatttgatacagatgacagtaattttagtagagtctgcaaaagatttgtaggtagcgttgggtgaatttagaagctactgtaaagtatggaaactAACCTTTCTAATGAAAG-----------GTTTTAGAAA-AAAAATATGCATCTATATATAGACCATA-TTTCA--GCTTT-G---CATTTTTTTA-TAGCATACTCTTCT-TACT-CTGTAGTAA-AAAGAGCAATCATGTTGTG---TTG-TTGAAGATTTTAAGCAGGGTTTTGATACAGCCTGGAGAAATGATCTTTGGTATAAGCTACTAGATAATGGGATTAAGGGGAAATGTTATAC-TT--T--TAAGGCAAATGTTTATAAAGG-AATCAAATCTAAG-ATAAGT-A--TA--AAT-GG-TGTA-TCA----T---------CAGATTAATT---CTT----------TGGTAATTTC-GGAGTTCACGACG-GTG-AAA---------TTTATCGCC-CT--------TC-ACTC-TATATAGTTTATAGT--TTGGAAG-A-GTtatcatttat
gi|16 : tc----------AA----------------CATCTCTGTGAACA-------G-GC-TA---G-A--AAGCAATGTA-GGAGTTATAG-TA-A--GA--------------ATAAG-AC-AA--TTTAAGTC---T-ACCTAT-G-ACTG-CAGC-AGATGTTCTTGTATAAA---G---TGTT-AAAC--C----AGTCATA--T--TCAAT-GTG-TTGTGAAA-T-T--GG--TTATG-AAA----C-T-TG--ACTAGTA--AA-CGC---ATTCA---T-TAATT-T----------TT----------T---------------TGAAA---TTTATCTATGTTTA-A----AAG-T---GTACTCTTTC-----ATG--T--G---AT--GTTTTTATGG-GAGGCCGGT-CGTTTCT--T-TATA-T
gi|18 : AATGATA--GATGGAAAATGTTTCAAGGTCAT--AAA---AAATCTTTACAATGG-TATTAAATCAAAGAGT-GTC-A--TGTAGAT--A-TTGG-TCAATATT---------C---AGACTTCTGTTTC-------CA-TGTAACGTC-GCAGTTAGACAAG-GGGAAAA---------CCTGTCACCTTTCTTTGTTGGC-AGTA-TATTTGA---ATGATGCTTTGAAGAA-ATTTACTG-TT-TT-TAATAA-TG-----GTTCAACGGTCTTTC----A-AT-------CTT----TATTGTGAG-AA----A-TTAG-GAAAATG-A-ATGAATGTTTA------------TT-TAAGA--TTGTTT-GT-G-CTgtccatttgtttatactagatggttcataactgggaaagtgtttctcaggtcagaaacaaaacgcatatatttat
gi|19 : A----------AA----------------GACTTATTT-AACAA------A-TC-CA---ATA--GAGCTATGTATGGTGTTATTG-GA-A--AA--------------TGCAG-AA-AA--CATAA-TC---T-ATCCATAA-ATTGTAAATTCGATATCTTTG-ATAAAGTTG---TA---AAAC--C----CATTCTT--C--TATAT-G-G-ATGTG
gi|2 : tttacttcaattctgaatgaaggacttaataaatatgcaaatagagttgaattgattctggaaaaaaaaattcaaaaatatttgggtgttacttttagaaaaagtggttcatataacctaaatatcAGTCGA-G--GTGGTTTTAGGAA-GCTA-TAT---G--AA-CATAGACAAAAATATTACAATTTTCGTTTCATTTT--TA-TGA-ACA------A-GAAAAC-------------AAAAATTAGTTTGCGCATTAG-TAGA---TTTCAAACAAGC----------GTATGT---AATGGTTTGTGGAGCAGGGTAGCTAAGAATCGTATAAACTGTAAATGATT---GTTTGTGTCAA---AAATATGTAC-ACGGTAATTAAATAAA-G-AT-AGT-A--TG--GAT-GG-TGTA-TCT----T---------C---TGA-TT---TGTC-------AGTTGTGATGTA-GGTGTGCGGCAAG-GCAAAAA---------TCTGTC-CCTAA-TGTATTCTT-TTTC-GATATTA---ATAAC--CCGGCC--A-ATATCT-G-TT-AG---AAAA-CG-TA-TA--------CCTAT-------GTTA-----C-A-AAGTATTAC-AG-AATCTTA-TAATAGAGGATG-G-AA---T-TTTA----TGT---ATT--TAAAA--CTCTGT-GTTC-CTT--TTTTATG-CCG-TTCATACTGTC-AT--TC-T-G--ACAGAAACTCCTGATATAA-TTTA-CA-GAATACTTT----GA-TT--ATA-------TTGTGAAC---AA--------------TAGAAAAGAAACGCCGATG-T-GGGTAA---------ATCA-----AAAAT-ATAG-T--------G-----TTT-T-A-GA------AAGGCCC-AATG-G--TAA-AAAAT---------C-A-TTTTCACACGT-CCTAAA--CAGAATACAACA-ACATT----GTCA---T-AGAAAATG----TAAA----ATAATT--T----------G-------------ATACCCA-------------TTCATTGTGTTTCT-----C--GCTCAGG---TTCTT------TCT----------A-----------------------------CATATCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTA-GA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT---------TTT-GAATTAT----------AT----------T---------------T---GAACTTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-C
gi|21 : TGTCAACTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G------TGATG-TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TAT---G-TTAATTT-AAAAT-T----------TC----------T--------------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-aattatgttcatactaaaactgtttcataatcccaggtccaaaaaactaaattttgttcattttataaatctattt
gi|22 : TGTCA-CTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G---TTATG----TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TAT---G-TTAATTT-AAAAT-T----------TC----------T--------------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-gcaaggtttacatgagaatgactgcatactgggtaaaattcgtaaatccggcaaatgaaactgtacatagcaatatatacatgtatt
gi|23 : aCGACAGG-GGGAAAAA--------TCTGTCCCCCCT-TTTATTTT--ACTT-TTTATCA---ATGATC-TTAGAAG-A-TTTTTTTG-ATAGA-GAAAAA-TGTTA-TGT-----GGTCTTTC---------A---------CAAT----TGAA-CAGT--G-TATT-GAGGACG-A-AC---T-TTTG-----TA---TTTT-TGAAA--TTTTTT-AT-C-CTG--TTATATG-CTG-AT-ATACAGTT-AT--T--T-G--TCTGAAAATGCTACTG--A-TTTA-CA-gcaaggtttacatgagatgactgcatactgggtaaaaattcgtaaatccggcaatgaaactgtaca
gi|25 : TCGTAATATC-GGAGTCCGTCAAG-GAGAAAT---------TTTATCTCC-------ATTTTC-A---------------------TTAGAAA-A-ATGTCCTG-CT-GA-TAGAAA-TA-TA--GT-----CGG-----------GTTATAGAGCTT-AATTACT----G-CA----A-TA---GAAAATGTA-AT---G-TGTAGGAACTCGAATTGC-CAGA-----------T-A-CTT--TTGTATG-CTG-ATAGTACTGCA-AT--Tatagtgtagcatta
gi|28 : ttcttAAACCTA---TATA-GTAC--T----TGTACCTG-T--TAAAT-G-G-GTGTGAAA-TATTGGGATTTA-G-AAGTTATT-T-AGATGTTATC------TGT---A---AGCTT-CAAT---------------------------------------------AAAGTTTA---------A-A----AAA-T--CG-ACGC---C-----AAAGGT--T---AT--G-GTTTATGGGGAATTAGGTGTGTATCCGAT-GTCA-GTGT---AT-A
gi|3 : TAACCTTATTAGTGAA-GTCAA-CCAG-GTTTTTAGAAAAGGGG-TAT---TCTAACTACAGA-AATA-TATTA--A-TTT-G---CATTTTCCTAACAA-ATA------TTGACAACTGT-TTAACAAAAAGAAACT-TTTTGTGCCTTCAATTTA---TTTTA--C-GGCTTTTGACACTGTCTATTGAAATGGGCTGTG-TACAAATTG-TGAA-AATGGTATTAATGGCAAATGTTTTACATTCCT--TAA---AAATATGTTTGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AATCGA-CCAGCTCA----T---------C---TGAATT---TT-C-------AATTGCA-TGT--GGGGTCCCGCAAG-GTGAAA----------TGTATCTC-TCT-TTTGTTCTC-ACTTGTATAT-A---ATGAT--TTCGAAG-AGATTTCTTGGCT-GG-TAAAA--TG-TAATGT-----GGACTTTC----TTGTTA-----CTC-CAGTAACTCAAG-CA----ACTAAC-GAAA-TA-A-AT---T-TTTA----CTT---TT-C-TAAAA--CTTTTT-AT-A-GTA--TTCTATG-CTG-ACGATACTTTTTAT--TAAT-T--TCAGA-TCAG-TGACG----TTTG-CAAGCATGC-CTCAAT-AGTT--TCA-------TT-----C---A---------------TA--------ATGTCA-TG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTCCT-C-AA------AAGGTCC-A-TC-TT-CCA-AAAATG--------T-AATTTT---ACTT-T---AA--TGG--TA----C-A--------GTTA---TCTGAAACCG----TGAA----AG-ATT--T----------A-------------A-AT--A-------------TTC--------T-C-----A--GGTCCGG---ATCAT------T-TA---------AA----------AA----------------CATTTCTCTGAACAG------G-TC-AA---A-A--AAGCCATGTATGGCGTGATAC-GA-A--AA--------------ATTAG-ACAAA--TTTAATTT---T-ACCAGTAG-AATGTCAGCTAG-CCTGTTTG-ATAAAGTTG---T-TT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGGT-TTTCG-AAA--ATCAT-CGATATTATTG--AGCCGT---A-TCAACTT-CAATT-T----------TT----------T---------------A---A---TTTA---------AGG----AAG-T--AGCACTC---A-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-T-TA-TTGTATAAT-AT-GTAACTGTT
gi|30 : TTTGA-CAA------A-GC-CAATAG-ATCGAGCTATGTATGGT-TTATTG-GA-A--AATGCAGAACACATATATAAATAT-AA--TCTAA-TTATTC-ATCCATTG-ATTGTAAACTTGAAATGTTTG-ATAAAGTTG---TAttaca
gi|31 : aATGTATGGAATTATAA-GA-T--AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--TAATTTAC-G-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTATaaacccattatatggatgt
gi|32 : GTATGGAATTATAA-GATAT-AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--T--AATTTCG-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTAT
gi|34 : CA-AAA--ATC-T-TGATATTATTG--AG-CGT---A-TCCACTT-AAATT-TCTAAAATATATT----------T---------------TTA-A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAG--T--T---AT--A---------------TGGT-CGTTTCC------CT-TTGT---AT--T--TAACTGTT
gi|36 : T----------T---------------A---A---TTTA---------A-G----AAA-T--AGTGCAC---C-----AAT--T--T---ATATG-GTTTATGGTGAAACTGGA-CGtatac
gi|4 : taatattcaaaccatatacTAACCTTATTAGTGAAAGTCAAAC--A-GGTTTTAGAAA-GGGG-TAT---TCTAC-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTTTTTTGTGCCTTCA-TTTA---TTTTAAACAGGCTTTTGACACTGTCTATTGAAATGGGCTGTGGTACAAATTGGTGAAAAATGGTATTAATGGCAAATGTTTTACATTCAT--TAA---AAATATGTATGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AAT-GA-CCAG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGTCAAG-GTGAAAA---------TGTATCTCCTCT-TTTGTTCTC-ACTG-TATATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGACTTTC----T-GTTA-----CTC-CAGTACTCCAAG-CA----A-TAAC-GAAAATA-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-GTA--TTCTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAATCAGCTGACG--G-TTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TC-TT-CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGACTT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCAT------T-T----------AA----------AA----------------CATTTATCTGAACAA------G-GT-CA---A-A--AAGCCATGTATGGCGTGATAC-GA-A--AA--------------ATTAG-AC-AA--TTTAA-TT---T-ACCAGTAG-AATGTCAGCTAGACCTGTTTG-ATAAAGTTG---TGTT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGG--TTTCG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-CAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTTatatcctttgt
gi|5 : T---TTTC-------A-TTGCAATGTCCGGGGTCCGTCAAGTGAAAAAAAAAAAAGTGTTTTTCTCCTCT-TTTGTTCTCGACTG-TA-ATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CT-GG-TAAAAAATG-TA-TGT-----GGACTTTC----T-GTTA-----CTCTCAGTACTCCAAG-CA----A-TAAC-GAAA-TA-A-AT---T-TTTAA---CTT---TTTC-TAAGAAGCTTTTTGAT-AGCTCATTCTTATGGCTGGACGATAA-GTT-AT--TA-TCT--TCAAAACTAGCTGACG--GGTTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A----------------A--------ATGTCAATGTT-TGAAAC---------CACA-----AAAATTATGGTT--------T-----TTC-T-C-AA------AA-GTCC-A-TC-TTGCCA-AAA--G--------T-A-TTTT---ACTT-T---AAATTGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAACTTAT----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCAT------T-G----------TA----------AA----------------CATTTATCTG-ACAA------G-GT-CA-----A--AAGCCATTTATGGCGT--GTA-GA-ATGAA--------------ATTAG-AC-AAACTTT-A-TT---T-ACCAGAAGAAATGTCA-CTAGACCTGTTTG-ATAAAGTTG---TGTTGGTA---C----TGT--CT--T--TGTAT-A-GTTTGTGAAAGTATGGGG--TTTCGAAAA--ATC-T-CGATATTATTG--AG-CGT---A-TC-ACTT-CAATT-T----------TT----------T---------------TA--A---TTTA---------A-G----AAGTT--AGCACTC---C-----AAA--T--T---ATG-G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-TACA-TTGT---ATAATAGTAACTGTT
gi|6 : --TAA---AAATATGTATGTTGG-GCGTAAAATCATG-TT-ATA-AACGG--AAT-GAATAGG-TTA----TGTCCGTGTGT---TGGGTT---TTTTTTTTTTTACGTGCAATGTG-GGAGTAAGGCAAG-GGGAGAA---------TTTATCTTCCTT-TCTGTTTTC-ATTA-TACATTA---ATGAC--CTTGAAA-C-ATTT-TTA-CA-AGAGAAAGA-GA-TA--GTC----GGGCTT------C-GAAA-----T-----GT-TTCTGAGTCA----A-T--T-GAAAAAG-A-CT---T-AATG----ATT---TACC-TGAAA--CTGTTA-AT-C-CTA--TTGTATA-CTG-ATGGCA--GTT-AT---A-T-TA-GCTGAATCCGCTGAAG--A-TTTA-CA-ACAGGCGTTAAATAAATTCTTCACATATTGTT-----C---AGAGTGGAAATTGAATTA--------ATATTAATA-T-TGAAAA---------AACC-----AAAGTTATGA-T--------T-----TTT-TTC-AA------AGGGTCCTA-TAAT--GAA-GAAATG--------T----TTT---ATTA-C---AA--TGG--AA----A-T--------ATTA---T-TGAGAATG----TTAA----GGAATT--C----------A-------------A-AT--ACTTAAGCATATTATTT--------TCT-----A--GATCAGG---CTCTT------T-TTACAAAGCCAAA----------AA----------------CATCTCTGTGAACAA------G-CC-CA---G-A--AAGCTATGTATGGTGTTATAA-GG-A--AA--------------ATCAG-AC-AA--TTTAA-TT---T-ACCAATTA-AATGTCAACTTGATCTGTTTG-ACAAAGT-----CATT-TTAC--C----TGTATTA--A--CTTAT-G-G-GTACGAAA-TTTGGGG--ATACG-AAA--ACT-TACAA-ATTATtttatc
gi|7 : aatttttatttaGGAGTTATTA-GA-A--GA--------------ATAAG-AC-AA--TTTAA-TC---T-ACCTATCG-ACTGCCAGTCAGATTTCCTTG-ATAAAGTTG---TA---ACAC--C----AGT-CTTA-T--TATGT-G-G-TTGTGAAA-TATGGGG--TTATG-AAA--ACC-T-TGAACTTATTA--AA-CGC---ATTCA--TC-TAATT-T----------TT----------T---------------TGAAA---TTTA---------
gi|7 : --AA-CGC---A-TTCACCT-AAATT-T----------TT----------TTTGAAATTTATTCTAT---G---TTTA---------A-A----AAG-T--TGTACTCTTTC-------A--TG-T---AT--G-GTTTATGGGGAGGCAGGT-CGATTCT---------CTTT---AT-AT-GTCATTGTTttctatgtttaaaaagncaaacgcattcacctaaattttttttgaaatttattctatgtttaaaaagttgtactctttcatgtatggtttatggggaggcaggtcgattctctttatatgtcattgtttatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|8 : ggagttattagaagaataagacaatttaatctacctatcgactgccagtcagatttccttgataaagttgtaacaccagtcttattatgtggttgtgaaatatggggttatgaaaaccttgaacttattaaacgcattcatctaatttttttgaaatttattctatgtttaaaaagncaATGGGG--TTATG-AGA--ATA-T-TGATAATATTA--AC-GGTTTCA-TCCACGT-T--TT-T----------TTAACAACATACT---------------T---A---TCTA---------A-A----GAG-T--AGCACGC---C-----AAGCTT--T---AT--G-ATTTAGGGTGAATCTGG----------GA-TACCCTTGT---AT-AT-ACAATTTTTtatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|9 : TCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTA-GA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT---------TTT-GAATTAT----------AT----------T---------------T---GAACTTTA---------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-Cacaaaaatgatctcttattgggaaagcttgcagttcaataacaatgacaacaaattgataaagttgtttaatgtttgtatttaacatgcatgaatagggaaaataagaaatccatgaattcatggtttgaaaagtattttggacaatgtgcctctcaaaacattaacacgcagttataacgcaacgtattttaaagtcaagtgttaaccaaaggctatgagattcaattttacaaaaattggcagaaggatatatctatgcttcaaaagggtaattacaaaatttcaaaagaaaatttgaatgtattaatattccacattattaccaagaacggtacgaaaaatctccaatagttttgaactacaaaccatcaccttgctgttgagttaggcagatggaataaaaggatgaacgcttttgatatattatgcaactgtaaccaaattggagatgaatttcattatttttgaatg
blockSeqs : A T AACCAG AGGGG TCTAAC C A CAAT C TTT CC A . TT A T T C A CA A G . AA A T T T T G G G TA A C G TGTGT . CA T A A A . AAC TA CGA TG C TGTCCGTGTGT C CTG TTTTTTTACG CC A A T G AAAAAAGTG G T C GAC TG AGTTT GC G A G A G A AG A T GTTCAAC T TCTTGTTACTCCAGTAACTCAAGCAACTAAC T . GAA G AGGAACTCGAATTGC AG A G TC CAT T G G T T TAA CTT A T T TAA T A A GAG CTTCACATATTGTTCAGAGTGGAAATTGAATTA C T . . . C T ACGTGTAGT C T T GGTTTG CATCTTG C C GTTTTTTTTT CAC CCTA AT GAATACAACAACATT CAG C GCAA TCCA TA ACGAATAGTTTTATCAAAATCTGGTTCATTGTGTAACGTTAAAAAAACCAAATAAAAACC C AAAACGGACA ATAG TC T T T TAC T TG TGCAGAACACATAT T T A AC G ATT G AG A A T A G T G AGTTATT CCAATTTTA TAT C C TGT G AT AT A TT A A G C GAA C TTCATCCA A A TTTTTGAAATTTATTCTATG TCTATGTTT ATCTT T CAA CTTCATATATT AT TT G G T AGTGTACA ATA A A
blockSeqs : A T GAGGT GCTA TCTAC C . AC . . CC . . A A T T C T CC . T . AA A T T T G G G A TT T T G CAT . TG . A T . . CA . GAA GT . ATATTC A . AGT C T G . C A A T . AC C GA C T . . C . . T . . ATGT C TGTTACAAAGTATTACAGAATCTTATAATA . . . . AACTTTTTC . G . AG G T . . T . TA TAG A T T GG . . T GAG ATATTGTGAACAATAGAAAAGAA G . . . . A . ATTAATA . . . . CTATAAT . A TTC . AC . TAAAAGGCTTTT . . . . . AAATACTTAAGCATATTATTTTCTAGATCAGGCTCTTTTTACAAAGCCAAAAA G GCAT AT . A T A CA . T . T . . . T . . AT T . C A T . G AGTTATT TGCTTTA TAA A . GTT . T AT . . C . G T A . ATTCA T A CTAAAATATATTTTTAA TCTTG GG . T CTTCATATATT G G A . T AGTGTACA . . .
blockSeqs : . T AAACA GGGG GAA . . A . . . . . T A . . . . CC . T . . . . . . G . . . TT C T A CCT . TG . T T . . CA . GG CA . TC A . AAT A A A . G . C C . AG A TA . G . . T . . G . . TGT T TCTGTTACTCTCAGTACTCCAAGCAATAAC . . . . ACTTTTTC . C . G T A . . A . TC AG A T T A . . C AAA TCATTCATA C . . . . T . A . . . . CAATGG . A TAA . T . TATTA . . . . . GATACCCATTCATTGTGTTTCTCGCTCAGGTTCTTTCTA G ACA G . T A C TA . . . A . . . . . . TA A . C C C . G TGTTG TGCTTTA TAT A . CT . . AT . . C . A T C . GTTAA G . TTAACAACATACTTA . A . A TTTCATGTG . A A . T GATGTCA . . .
blockSeqs : . C . A CAT . TG . T T . . A . GA CA . TC G . AAT C G T . A . T T . TT C CA . A . . C . . T . . TGT G TCTGTTACTCCAGTACTCCAAGCAATAAC . . . . GATTTACC . T . G G G . . T . TA GA T A C A . . C GA TCATTCATA C . . . . T . G . . . . CATCTT . A TA . T . GTACA . . . . . AAATATTCTCAGGTCCGGATCATTTAAAAA T GGC G . A A T AG . . . A . . . . . . CA C . T T A . A TGTT CAGTC TA G . GA . . TT . . T . . T C . GTTAA A . TTTTGAAA . A . A CGAATTCT . A A . T GGTTACA . . .
blockSeqs : . C . C . . . A . A AG . TC . . CA C G G . T . T T . AC T AA . A . . C . . T . . TGT A GTTATAGAGCTTAATTACTGCAATA . . . . TTGTACA . T . C T C . . T . TA GT T A C G . . G AG ACGTTATA C . . . . T . T . . . . CATCTT . A CA . T . GTAAA . . . . . AAATATTCTCCAGGTCCGGATCATTTAAAA G ATC G . T T T TG . . . C . . . . . . TA A . C T A . A TATA CCATT TA G . GT . . TT . . T . . T G . ATCAA A . ATTTGAAC . G . C CAAAGGTT . G G . T GGTTACA . . .
blockSeqs : . AT G G T . T . T T . AC G AA . C . . C . . T . . GTC A TCAATCTTTATTGTGAGAAATTAG . . . . ATGTATT . T . A A C . . T . T TT C A C A . . . G TCATTCAA C . . . . T . T . . . . GACAT . A TA . T . GTAAA . . . . . AAATATTCTCCAGGTCCGGATCATTGTAAA C GCA G . A A T TA . . . A . . . . . . AG T . A T A . C TGTT TTGTA GT A . GG . . TC . . T . . T G . ATCCA C . TTTTGAAA . G . A TTTCATGT . G A . T GATACCC . . .
blockSeqs : . A T . A . T C . AC G TA . A . . C . . T . . TA A CGAAATGTTTCTGAGTCAATT . . . . GTATTTT . T . A A T . . . . A TT T C A . . . T . . . . T . T . . . . CTAT . . TA . T . GAAAT . . . . . AAATACCTCTAATAGTTGTTGTCT T GTC A . C C G AC . . . T . . . . . . CA T . T A G . G CATT CTGTA AT G . GT . . AT . . T . . A G . ATCAA C . ATTTGAAC . A . A CAAGCTTT . G T . A GGTTTA . .
blockSeqs : G . G . T . . AT A A . A . . . . . . . . GT G TCACAATTGAACAGTGTATT . . . . ACTTTTC . G . A A G . . . . . . T . . . . TATG . . T . C . AC . . . . . C AGC A . T T T TG . . . A . . . . . . AG T . G T G . G AAT CTGTA T T . GG . . AT . . T . . A G . ATTCA A . GTTTTAA . G . A GATTTAT . G A . . TTATA
blockSeqs : . . . . A . . . T . . . . . . ATT . . . C C GGT G . C A T AA . . . C . . . . . . AG A . G T G . G TTT CTGTA C A . GG . . TC . . T . . T A . ATTCA C . TTTTAA . G . A GATTTAT . G A . . CT
blockSeqs : G GGT G . C A T AA . . . C . . . . . . AG A . A T G . G TA CTGT T G . GT . . TC . . T . . T A . ACAC C . TTTAA . G . A AAAATT . G G . . .
blockSeqs : G GCC . . T C G AC . . . T . . . . . . AG T . A A G . G TA CAGT T G . GG . . AC . . C . . T . . ATCA T . TTTTA . G . T CAAGTT . A T .
blockSeqs : . GCA . . A C T TA . . . T . . . . . . AA C . A A C . G TT AAA T T . GT . . AT . . C . . A . . AAG A . AAAG . A . A CAATTT . . A .
blockSeqs : T T AA . . . C . . . . . . TA C . C T A . G TT CAG T A . GT . . AT . . T . . T . . . T . TCT . A . T CAAATT . . . .
blockSeqs : A T TA . . . A . . . . . . TA . . C A . . . TA CAG A A . T . . AT . . . . . T . . G . TCT . A . . CAAATT . . . .
blockSeqs : A . TA . . . A . . . . . . A T . . . TA AAA . . . . . A . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : CAT** *** GA** TC**************** AAT******* AC* T* TGT****** TCTGTTACTCAGTANTNCGAGCAATAAT******************* TA*** NT*** GAG TCATTCATA**************************************** ********* ***** CATCNT**** NA* N* TTTTAAA*************************************** CAAATT*************** GGTTACA**
originalCons : TAACCTTATTAGTGAAAGTCGA-C--G-GGTTTTAGAAA-GGGG-TAT---TCTAN-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGTGAANAATGGTATTAATGGNAAATGTTTTACGTTCGT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GG-TAAAAA-TG-TA-TGT-----GGNCTTTC----C-GTTA-----CTC-CAGTACTCCGAG-CA----A-TAAC-GAAAATG-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T-T--TCAGAANCNGCTGACG--G-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------TA--------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCC-A-TN-T--CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCGT------T-T----------AA----------AA----------------CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTT-NAATT-T----------TT----------T---------------T---A---TTTA---------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
finalCons : TAACCTTATTAGTGAAAGTCGA-C--G-GGTTTTAGAAA-GGGG-TAT---TCTAN-TACAGACAATA-TATTA--ACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGTGAANAATGGTATTAATGGNAAATGTTTTACGTTCAT--TAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AATGA--TNNG-TCATC----------------TGAATT---TTTCAAT-------TGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTCAC-TN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CT-GGT-AAAAA-TG-TATGT------GGNCTTTCTGTTACTCAGTANTNCGAGCAATAAT-------------------GAAAATG-A-AT---T-TTTA----CTT---TTTC-TAAAA--CTTTTT-AT-A-CTN--TTNTATG-CTG-ACGATACTGTT-ATTA---TNT---CAGAANCNGCTGACG--G-TTTA-CA-GCATGCNCTCAATGAGTTTCATTCATA----------------------------------------ATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AA------AAGGTCCATCNT----CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA----A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-AT--A-------------TTC--------TCC-----A--GGTCCGG---ATCGT------T-T----------AA----------AA----------------CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGT---A-TCAACTTN-AATT-TTTTTAAA---------------------------------------TTTA---------A-G----AAG-T--AGCACTCCAAATT---------------AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGTTACA--TTGT---AT-AT-GTAACTGTT
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTCAAAACTGAATTTGGATTAGAGAAATACCTAAAATGAATAGAACAGTATTTATTTTATTGAATTCAGAACTGCAAATCACCGACTCCCAGTCGAGACTGGAAAATGGTGTGGCACTCCAAAACATGAGAGAATTTGCCATATCTGTAAAACGAATCAAATAGCTGATGAGTATTTATATATACTTTTGAATGCCAGTTTTTTGAAGAGTGGCGAAAAAAATATCTGTGTAAAAATATTGTTTTAAACCAAACTATTATAAATTTTCCGAATTATTGTCAACTGCTGACTCCAATGTACTTGTCAAATTGTGTAGTTTTATATCTAAAATATATGACCAAGTCTGTCCTCCTTGACCTGATATTACTCTGCTTTCATGTGTACATTGTATATTGTTTCAATTTGTATATATTGTTTATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGAACTTG
Unaligned ( gi|12 ): ATATTATTGACATTCAGCATGCAAATCACCGACTCTCCGGTCAAGACTGGCAGATGTTGCGTGGCACTCCAAAACATGAGAGATATTGCCATATCTGATAAAACGAATCAATAGCTGATGAAATAGAGTTTATATTCCTTGAATGCCATTTTTTCGGAAGAATGGCCAAAAATAAAAATAGTCTGATATAAAAAGATTTTTAGGAAACCAAACTATTAAAATTTTCTGAGATTAATTGTCATGGAATGAAATGTACATTTAATCGACTCTTTTATCATTTCCATGATAAAAGTCATCTACTACAAATATGACCAGAATTTTTCCTCCCTTGATTCATCTCAATTCATCTGATTTCTGCTTCTTTCAGGTGACCTTGTACATGTAATATTGTTTCGAATTTGTATATATTGTATATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGGAACTTGA
Unaligned ( gi|17 ): AAAATATCTGTGTAAAAATATTTTTATAAACCAAACTATTGCAAATTTTCTGAATTATTGTCAACTGCTGGACTCCATGTACTTGTCAAAATGTTGTTGGTTTGATATCTAAAATATTTATGGACCAAGTCTGTCTCCTTATTCATCTCAAGTATCTGATAATTTTTACTCTCTGATTTTTCTGTGTATACCTATTGACATTATTTGTTTCACATTTTGTTATATATTGTATTAGTAGAATCATGTACCTTTAGAGTGGGGTTGAGAGAAATAAACTGAACTACT
Unaligned ( gi|20 ): AAAAAAATATTTTAGTCCAAATCTCAGGTGCGAACCATTCCTGTCAAGAAGCGGAAAGTTTGCTTTTAACAGAAGTATATTAAACTTGTATTGAAAGGTCTTTACGCTAGATCATTATTTTTCATGGTTCGTGGTTCGAGCTCTTTATTACTTGTCGGCTAGACGTGATAGATACATGTAAAATCATCAACCCAATCTTATCTTATTTGTGAGATTTCGATTTATTACTGAAAAGGTACACCTAAAATC
Unaligned ( gi|24 ): AGCTGACTCCAATGTACTTGTACAAATTGTGTAGTTTTATGTCTAGTCTGTCCTCCTTGATTCATCTCATTCATCTGATATTACTCTGCTTTTTCATGTGTACCTTGTACATGTATATTGTTTCAATTTGTATATATTGTATATAGAACCTCATGTACATGTACCATTAAGTGGTGTGAGAGAAATAAATAAACTGAAAA
Unaligned ( gi|26 ): AAGAATATCTCACTGGGCAAAACTGCTTTTAAGTCCAGATAGTAAGATTGTGTATGTTTTATATAAGTTTTTATATGATCAATTCTGTGAAAGAAATTTTATGAATTCTTAGCTATCATGTAACAAAATATTTTAGATACTTGTGGGTATTCCCAAC
Unaligned ( gi|27 ): TCCTCCGTAATTCATTTCAATCATCTAAAATGGCTATCATGCTCTTTTCACACCATGTACCTTGTATATATTGTTCCTAACTGTATGAATATACAAGTACTGTAAATAGAACCTCATGTACCATAGCGTGGCATGAGAGAAGTATACTAAAGTTGA
Unaligned ( gi|29 ): TGTAGTTTTTAATATCTTAATACATGAACCTAAGTCTGTCCTCCTTTGAATTCATCTCAAGTGCATTCTGATTCTGCTTTTTTCATGTGTAGCTTTGTAGTATTTTTTTCAGTTGTAATATATTGTATAAGGAACCTCATGGTGGTGCAGAGAA
Unaligned ( gi|33 ): ACTCCCATTCGTGATTGAAAGATGGTATGGCACTCAAAAATGGAAAGGACGTGTCATATCAATGATACATGTAGCGATCATCTAGCCGACGAATATGACTATGTTCTAGATAGCCAGGATTTTG
Unaligned ( gi|35 ): TAAAGATCAGTATATTTACAGAAATGGCAAGTATATTCATGATTCTTTTAATAAGATATACAGTATTTTCAGAAGCCTATTACTTAGGAATGTATATACT
Unaligned ( gi|37 ): CAAATTATTTTAATTCAAATTTTTCGTATCATGGTGAACTGCTGATTCCGGTGAAAGACATGAAATTGTGTAATTTCACAT
Unaligned ( gi|38 ): TCCTGAAATATATTTTATGTATGAAAAGTAGTATACCTTCGTATATGGTTTATGGTGAATCAGGTC
Unaligned ( gi|39 ): CTATATAGAACCTCATGTATCATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACT
Unaligned ( gi|40 ): TGCTTTTTCATGTGTACATAATGTATATTGTTTCAATTTGTATATATTGT
Unaligned ( gi|41 ): AAAGAATTTGCCATATCTGTAAAACTAATCAAAATAGCTG
Unaligned ( gi|42 ): CATTAAGTGGTGTAAGAGAAATAAATTGAACTTGAACTTA
Alignments
lowQualScore : 33333333 111111 222222222 11 11 1 111 1 1 33333333 11 1 111 1 11111111 111 1111 333333333333333333 111 2222222222 222222222 11 555555555555555555555555555555555555555555555555555555555555555 33333333333333333 11111 111 666666666666666666666666666666666666666666666666 222222222 11111 22222222222222 2222222222222 111111111111 33333333333333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111111 11111 11111111111111 11111111 11111111111 11111 111 111111 444444444444444444444444444444444444444444444 222222222222222222222 222222222
lowQualScore : 3 3 77777777 222222 666666666 22 33 6 0 777 66 0 0 66666666 3 3 33 8 0 9 55 0 0 1 777 44 3 3 0 3 9 1 2 0 8 0 0 11 1 1 44444444 6 111 44 6 1 7 6 6 3333 99 7777 22 6 666666666666666666 1 000 3333333333 77 1 0 1 4 1 000000000 0 0 2 6 4 55 0 66 88888 99 1 4 4 1 4 66 4 4 555555555555555555555555555555555555555555555555555555555555555 0 4 4 777 4 00000000000000000 55 2 4 4 55 777 1 4 4 0 4 66 55 00000 0 1 1 66 1 99 5 5 6 111 999999999999999999999999999999999999999999999999 1 5 5 0 000000000 22222 4 88888888888888 4 777 9999999999999 4 4 999999999999 777 88888 66 55555555555555555 777 4 0 9999 9999 66 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 4 00000000000 11111 44 1 1 1 222 2 55 44444444444444 1 2 2 33 5 444 2 22 3 2 1 1 1 2 2 88888888 22222222222 66666 2 2 2222 2 0 55 33 2 33 3 2 7 1 333 2 444444 33 2 5 333333333333333333333333333333333333333333333 555555 2 444 444444444444444444444 66 44 2 2 4 666666666 888 5 5
lowQualScore : . . ........ ...... ......... .. .. . . ... .. . . ........ . . .. . . . .. . . . ... .. . . . . . . . . . . . .. . . ........ . ... .. . . . . . .... .. .... .. . .................. . ... .......... .. . . . . . ......... . . . . . .. . .. ..... .. . . . . . .. . . ............................................................... . . . ... . ................. .. . . . .. ... . . . . . .. .. ..... . . . .. . .. . . . ... ................................................ . . . . ......... ..... . .............. . ... ............. . . ............ ... ..... .. ................. ... . . .... .... .. .................................................................................................................................. . . ........... ..... .. . . . ... . .. .............. . . . .. . ... . .. . . . . . . . ........ ........... ..... . . .... . . .. .. . .. . . . . ... . ...... .. . . ............................................. ...... . ... ..................... .. .. . . . ......... ... . .
lowQualScore : 2 2 88888888 555555 000000000 55 88 5 0 555 88 0 0 22222222 2 2 00 8 2 8 00 2 0 0 555 00 2 2 2 5 8 0 5 8 8 2 8 88 0 7 88888888 0 777 33 7 0 8 7 7 5555 22 7777 00 7 222222222222222222 7 000 6666666666 55 1 2 0 4 0 000000000 3 5 4 4 0 66 7 44 22222 55 0 0 0 9 4 88 4 4 888888888888888888888888888888888888888888888888888888888888888 8 0 0 000 0 44444444444444444 55 3 0 0 22 111 0 4 4 1 4 11 11 11111 5 0 0 99 1 22 0 0 6 111 666666666666666666666666666666666666666666666666 4 0 0 5 000000000 55555 4 22222222222222 4 222 6666666666666 4 6 777777777777 888 22222 11 77777777777777777 888 4 1 4444 4444 11 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 0 44444444444 11111 22 0 9 1 777 5 99 77777777777777 0 5 5 44 0 444 5 22 6 7 0 0 8 5 2 88888888 22222222222 99999 2 5 9999 7 6 99 11 4 22 2 4 1 6 222 7 444444 77 7 3 111111111111111111111111111111111111111111111 888888 7 777 777777777777777777777 33 22 3 7 5 222222222 888 0 7
consensus : TAACCTTATTAGTGAAAGTCGA-C--G-GGTTTTAGAAA-GGGG-TAT---TCTAN-TACAGAC-AATATATT--AACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGTGAANAATGGTATTAATGGNAAATGTTTTACGTT--CGTTAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CTGG-TAAAAA-TGT-A-TGT-----GGGCTTTC----T-GTTA-----CTC--AGTACTNCGAGCA----A-T--AAC-GAAAATG-A-AT---T-TTT----A-CTT---TTTC-TAAAA--CTTTTT-A-TA-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T--NT-CAGAANCNGCTG--ACGG-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------T--------AATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AAAAGGTCC-AT------CNT-CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA-A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-A--TA-------------TTC--------TCC-----A--GGTCCGG---ATCGT------T-T----------AA----------AA----------------CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGTA-TCAACTT-NA-ATT-T----------TTTT---A----------A-TTTA-----------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
Reference ( family-1027 ) : TAACCTTATTAGTGAAAGTCGA-C--G-GGTTTTAGAAA-GGGG-TAT---TCTAN-TACAGAC-AATATATT--AACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTATTTTGTGCCTTCG-TTNA---TTTTAAACAGGCTTTTGACACTGTCTGTTGAAATGGNCTGTGGTACAAGTTGGTGAANAATGGTATTAATGGNAAATGTTTTACGTT--CATTAA---AAATATGTACGACGG-AATTAAATCNATG-GT-ATC-A--TG--AAT-GA-TNNG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGNCAAG-GNGAAAA---------TTTGTCTCCTCT-TTTGTTCTC-ACTN-TATATNA---ATGAT--TTNGAAG-A-ATTTCTTG-CTGG-TAAAAA-TGT-A-TGT-----GGNCTTTC----T-GTTA-----CTC--AGTANTNCGAGCA----A-T--AAT-GAAAATG-A-AT---T-TTT----A-CTT---TTTC-TAAAA--CTTTTT-A-TA-CTN--TTNTATG-CTG-ACGATACTGTT-AT--TA-T--NT-CAGAANCNGCTG--ACGG-TTTA-CA-GCATGCNCTCAATGAGTT--TCA-------TT-----C---A---------------T--------AATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AAAAGGTCC-AT------CNT-CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA-A-A--------GTTA---T-TGAAACCG----TGAA----AGAATT--T----------A-------------A-A--TA-------------TTC--------TCC-----A--GGTCCGG---ATCGT------T-T----------AA----------AA----------------CATTTCTNTGAACAA------G-NC-CA---G-A--AAGCNATGTATGGNGTTATNA-GA-A--AA--------------ATNAG-AC-AA--TTTAA-TT---T-ACCAGTNG-ANTGTCAGCTNGATCTGTTTG-ATAAAGTTG---TATT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAA-TATGGGG--TTACG-AAA--ATC-T-CGATATTATTG--AG-CGTA-TCAACTT-NA-ATT-T----------TTTT--AA----------A-TTTA-----------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTTTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTT
gi|1 : AATTATGG-T--------T-----TTC-T-C-AAAAGGTC------------T-TCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA-T-A--------GTTA---T-TGAAATCG----TGAA----AGATTT--T----------AGATATCTCGGAATA-A--TA-------------TTT--------TCC-----A--GGCCCGG---ATAAT------T-T----------
gi|1 : ----------------CATTTATCTGAACAA------G-CT-CA---A-A--AAGCCATGTAT-----------------------------------TAG-AC-A---TTCAA-TT---T-ACCAGTAG-AATGTCAGCGAGATTTGTTTG-ATAAGGTTG---T--T-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAGG-TATGAGG--TTTCG-AAA--ATC-T-CGACATTATTT--AG-CGCA-TCCACTTAAA-ATT-TCTAAAACATATTTT--TG----------A-TTTA-----------A-G----AAG-T--AGCACTC---C-----TAG--TTAT---AT--G-GTCTATGGAGAAACTGGT-TGTTTCC---------CTTT---AT-AT-GTAACAGTTtttagggcaacccccctaaccccccaaccccccatttatctgaacaagctcaaaaagccatgtattagacattcaatttaccagtagaatgtcagcgagatttgtttgataaggttgttgtacctgtacttttgtatggttgtgaggtatgaggtttcgaaaatctcgacattatttagcgcatccacttaaaatttctaaaacatatttttgatttaagaagtagcactcctagttatatggtctatggagaaactggttgtttccctttatatgtaacagtttatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|10 : aattatggttttctcaaaaggtcttcaaaaatgtattttactttaatggtatagttattgaaatcgtgaaagattttagatatctcggaataatattttccaggcccggataattttttagggcaacccccctaaccccccaacccccAAAATG-ATAT---G-TTT----G-TTA---TGT--TAAAA--CTTTGT-A-TA-CTC--TTTTATG-CAG-ACGACACTGTT-CTAATA-TTGAT-CAGAAACTCCTT--CTGG-TTTA-CA-ACACTCACTCGAT-ATCT--T---------TT-----CCGAG---------------T--------ATTGT-AGTT-TATGGAAACTTGCCGTGAACATAGCTAAAACCATAG-TA-------TTAATATTT-T-C-AAAAGGCCC---------TAT-GTA-AAACCA--------T-A-GTTT-----TT-T---A--------TA-A-AAGGCTTTTGATA---T-GGAAAATA----AAAA----AAAATT--TTCCTATTTGGG-------------A-A--TA-------------TCC--------CTCTAAAGA--AGT--GG---AAAGT------T-T----------AACAATGCAAAGAA----------------TATTTAACAGAACAA------GCAT-CA-----A--AAGCTCTTTATGGTG-TATTACGT-A--AG--------------ATTCG-TT-AT--TTCAA-TT---TGGCTA--AA-ATTGTCAGTTAGACTTGTTTG-ATAAAG-TA---AAT---CAC--CCAATTTTACTT-------TAC-T-C-TTGTGAAA-TTTGGGG--TTATG-AGA--AAA-T-GGACATTATTGAAAA-AGTA--CACCTT-AA-ATT-T----------GTTT--TA----------A-TTTATCTTG------A-ATCTTAAG-TCAAGTACCC---C-----GAA--TTCT---AT--G-GTGTATGGGGAAAGTGGT-tatacaagaatgacatctcactggacaaaactgcttttaatccagagagtaagattgtgcatgttttatagaagtttttacataatcaatgctgcaaaaggaattttatggattcttggttatcatgtattaaaaatatttttgatctttgagggtatttcaacaagttttcatagatatcaaattaaagatcggtatatacagaaatggcaaagtgatatgcatgagtcttctaagggtaagatatagagtattttaaaaactgaatttggatttgagaaatatcgtaatatattacctaaaaactcagagcaacattcataaaattcaaaactgcaaatcatcgactcccagacgagactggaagatggtgtggcactccaaaacatgtgaggatttgccaattctgtaaaatgaatcagatagttgatgaatatcattatatctttgaatgtcagttttttgaagaatggcgaaaaaatatctgtataaaaatattgttataaaccaaactattcaaattttccgaattattgtcaattgatgactccaatgtacttatcaagttgtgtagttttatatataaaatacatgaccaagtctgtccttcataattcatctcattcatctaaaattactctgttttttcacgtgtaccttgtatattgtattgtatatagaacctcacgtaccatta
gi|13 : GAAAA---------TTTGTTTCCATT-TTTTTCCT---CTT-TATAGAA---GTGAT--CTAG-AG-A-ATCTTTTA-TTGGACAAAAA-TAT-A--GT-----GAGTCTCCAAGGC-ATTA-----CTC------CTC----CA----A-T--A---GAAAATG-A-AT---T-GTT-------TT---GTACATGAAA--CTATTT-A-TG-TTG--TTTTATA-CTG-ATGATGCTGTA-AT--TA-T--AG-CTGAGACTGCAG--ATGA-TCTATCA-AT-TGTAATCAATG---T--ACG-------TT---------A---------------T--------AA-GTCAATA-C-TGACAA---------AACT-----AAAATATTGA-T--------A-----TTC-T-CTAGAGGGTCT-AT--------G-CCACAGAATGGTTTTTTTT-T-TCTT---ACTA-T---AA--CG------A-C--------GTTACAGT-AGAAACTA----TGAA----AGATTT--T----------A-------------A-A--TA--------------CC--------TCT-----AATAGTT------GTTGT------C-T------------------------------------------TTTCT-TCAACAAAAAACGG-ACACA---G-A--AAACAATTTGAAGTGTAATCA-TA-A--AA--------------ATTAG-AC-GG--TTTAA-TT---T-ACCAGTagatatccattgtcaattaatgtgattt
gi|14 : ---------------T--------ATTGTGAATA-T-TAGTGA---------AACA-----AAAATTGTAG-TACGTGTAGT-----TTC-T----AAAGGTTTGATGGTCGACAT-CCC-AAA-TG--------TTC-TTTC---ACTCAC---AA--TG---TA-TTA--------TTTG---T-TGAAACAGGCAATGAATCCAAGTATT--T----------ACG-----------A-A--TAGTT----------TTA--------TCA-----A--AATCTGGTTCATTGTGTAACGT-T----------AA----------AAAAACCAAATAAAAACCCGCCTCTGTGAGCAA------A-CA-CA---G-A--AAGCTGTATTTGGAGCCATTA--A-T--AA--------------ATAAG-AT-TA--TTTGG-TC---T-ACCATTTC-ACTGTCAGtca
gi|15 : gaaactgtttatgttatttgatacagatgacagtaattttagtagagtctgcaaaagatttgtaggtagcgttgggtgaatttagaagctactgtaaagtatggaaactAACCTTTCTAATGAAAG-----------GTTTTAGAAA-AAAAATATGCATCTATATATAGAC-CATATTTC--AGCTTT-G---CATTTTTTTA-TAGCATACTCTTCT-TACT-CTGTAGTAA-AAAGAGCAATCATGTTGTG---TTG-TTGAAGATTTTAAGCAGGGTTTTGATACAGCCTGGAGAAATGATCTTTGGTATAAGCTACTAGATAATGGGATTAAGGGGAAATGTTATAC-TT----TTAAGGCAAATGTTTATAAAGG-AATCAAATCTAAG-ATAAGT-A--TA--AAT-GG-TGTA-TCA----T---------CAGATTAATT---CTT----------TGGTAATTTC-GGAGTTCACGACG-GTG-AAA---------TTTATCGCC-CT--------TC-ACTC-TATATAGTTTATAGT--TTGGAAG-A-GTtatcatttat
gi|16 : tc----------AA----------------CATCTCTGTGAACA-------G-GC-TA---G-A--AAGCAATGTA-GGAGTTATAG-TA-A--GA--------------ATAAG-AC-AA--TTTAAGTC---T-ACCTAT-G-ACTG-CAGC-AGATGTTCTTGTATAAA---G---TGTT-AAAC--C----AGTCATA--T--TCAAT-GTG-TTGTGAAA-T-T--GG--TTATG-AAA----C-T-TG--ACTAGTA--AA-CGCATTCA---T-TA-ATT-T----------TTTTG-AA----------A-TTTATCTATGTTT--A-A----AAG-T---GTACTCTTTC-----ATG--T--G---AT--GTTTTTATGG-GAGGCCGGT-CGTTTCT--T-TATA-T
gi|18 : AATGATA--GATGGAAAATGTTTCAAGGT--CATAAA---AAATCTTTACAATGG-TATTAAATCAAAGAGT-GTC-A--TGTAGAT--A-TTGG-TCAATATT---------C---AGACTTCTGTTTC-------CA-TGTAACGTC-GCAGTTAGACAAG-GGGAAAA---------CCTGTCACCTTTCTTTGTTGGC-AGTA-TATTTGA---ATGATGCTTTGAAGAA-ATTTACTG-TTTT-TAATAA-TG-----GTTCAACGGTCTTTC---------A-----ATC--TTTATTGTGAGAA----A-T--TAG-GAAAATG-A-ATGAATGTTT----A---------TT-TAAGA--TTGTTT-G-TG-CTgtccatttgtttatactagatggttcataactgggaaagtgtttctcaggtcagaaacaaaacgcatatatttat
gi|19 : A----------AA----------------GACTTATTT-AACAA------A-TC-CA---ATA--GAGCTATGTATGGTGTTATTG-GA-A--AA--------------TGCAG-AA-AA--CATAA-TC---T-ATCCATAA-ATTGTAAATTCGATATCTTTG-ATAAAGTTG---TA---AAAC--C----CATTCTT--C--TATAT-G-G-ATGTG
gi|2 : tttacttcaattctgaatgaaggacttaataaatatgcaaatagagttgaattgattctggaaaaaaaaattcaaaaatatttgggtgttacttttagaaaaagtggttcatataacctaaatatcAGTCGA-G--GTGGTTTTAGGAA-GCTA-TAT-----GAA-CATAGACAAAAATATTACAATTTTCGTTTCATTTT--TA-TGA-ACA------A-GAAAAC-------------AAAAATTAGTTTGCGCATTAG-TAGA---TTTCAAACAAGC----------GTATGT---AATGGTTTGTGGAGCAGGGTAGCTAAGAATCGTATAAACTGTAAATGATT---GTTTGTGTCAA---AAATATGTAC-ACGGTAATTAAATAAA-G-AT-AGT-A--TG--GAT-GG-TGTA-TCT----T---------C---TG-ATT---TGTC-------AGTTGTGATGTA-GGTGTGCGGCAAG-GCAAAAA---------TCTGTC-CCTAA-TGTATTCTT-TTTC-GATATTA---ATAA---CCCGGCC-A-ATATC-TG-TTAG---AAAA-CGT-A-T---------AC-CTA----T-GTTA-----CAA--AGTATTAC-AGAATCTTA-T--AATAGAGGATG-G-AA---T-TTT----A--TG---TATT-TAAAA--CTCTGT-GTTC-CTT--TTTTATG-CCG-TTCATACTGTC-AT--TC-T--GA-CAGAAACTCCTGATATAA-TTTA-CA-GAATACTT----TGA-TT--ATA-------TTGTGAACA--A---------------TAGAAAAGAAACGCCGATG-T-GGGTAA---------ATCA-----AAAA-TATAG-T--------G-----TTT-T-A-GAAAGGCCC-AA------TGG-TAA-AAAAT---------C-A-TTTTCACACGT-CCTAAA--CAGAATACA-ACAACATT-GTCA---T-AGAAAATG----TAAA----ATAATT--T----------G-------------ATACCCA-------------TTCATTGTGTTTCT-----C--GCTCAGG---TTCTT------TCT-----------------------A----------------CATATCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTA-GA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT------TTT-GA-ATTAT----------ATTT--GA----------ACTTTA-----------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-C
gi|21 : TGTCAACTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G------TGATG-TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TATG-TTAATTT-AA-AAT-T----------TCT----------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-aattatgttcatactaaaactgtttcataatcccaggtccaaaaaactaaattttgttcattttataaatctattt
gi|22 : TGTCA-CTTGGTCTATTTC-ACAATATTG---T--T-GTACTGC----TTTATTT--TA-CGTAT-G---TTATG----TACGATG--TTTTG-GAA--ACC-T-TGATGTAATTC--AA-TATG-TTAATTT-AA-AAT-T----------TCT----------------------------------G----AA-----AACATT-----------GA--T--TTATAT--G-ATTTATGGAGAAAATCGG-CGTTTCCAGTGTACA-gcaaggtttacatgagaatgactgcatactgggtaaaattcgtaaatccggcaaatgaaactgtacatagcaatatatacatgtatt
gi|23 : aCGACAGG-GGGAAAAA--------TCTGTCCCCCCT-TTTATTTT--ACTT-TTTATCA---ATGATC-TTAGAAG-A-TTTTTTTG-ATAGAGAAAAA-TGTTA-TGT-----GGTCTTTC---------A-----C-------AATT-GAACA----G-TGTATT-GAGGACG-A-AC---T-TTT----G-TAT---TTT--TGAAA--TTTTTT-A-TC-CTG--TTATATG-CTG-AT-ATACAGTT-AT--T--T--GT-CTGAAAATGCTA--CTGA-TTTA-CA-gcaaggtttacatgagatgactgcatactgggtaaaaattcgtaaatccggcaatgaaactgtaca
gi|25 : TCGTAATATC-GGAGTCCGTCAAG-GAGAAAT---------TTTATCTCC-------ATTTTC-A---------------------TTAGAAA-A-ATGTCCTG-CTGA-TAGAAA-TAT-A--GT-----CGG-----------GTTATAGAGCTT--A--ATTACT-GCA----A-T--A---GAAAATGTA-AT---G-TGTAGGAA-CTCGAATTGC-CAG-----------A-TA-CTT--TTGTATG-CTG-ATAGTACTGCA-AT--Tatagtgtagcatta
gi|28 : ttcttAAACCTA---TATA-GTAC--T----TGTACCTG-T--TAAAT-G-G-GTGTGAAA-TATTGGGATTTA-G-AAGTTATT-T-AGATGTTATC------TGTA---AGCTT-CA-AT-------------------AA----------AGTTTA-----------A-A----AAA-T--CG-ACGC---C-----AAAGGT--T---AT--G-GTTTATGGGGAATTAGGTGTGTATCCGAT-GTCA-GTGT---AT-A
gi|3 : TAACCTTATTAGTGAA-GTCAA-CCAG-GTTTTTAGAAAAGGGG-TAT---TCTAACTACAGA--AATATATT--AA-TTT-G---CATTTTCCTAACAA-ATA------TTGACAACTGT-TTAACAAAAAGAAACT-TTTTGTGCCTTCAATTTA---TTTTA--C-GGCTTTTGACACTGTCTATTGAAATGGGCTGTG-TACAAATTG-TGAA-AATGGTATTAATGGCAAATGTTTTACATT--CCTTAA---AAATATGTTTGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AATCGA-CCAGCTCA----T---------C---TGAATT---TT-C-------AATTGCA-TGT--GGGGTCCCGCAAG-GTGAAA----------TGTATCTC-TCT-TTTGTTCTC-ACTTGTATAT-A---ATGAT--TTCGAAG-AGATTTCTTGGCTGG-TAAAA--TGT-AATGT-----GGACTTTC----TTGTTA-----CTCC-AGTAACTCAAGCA----ACT--AAC-GAAA-TA-A-AT---T-TTT----A-CTT---TT-C-TAAAA--CTTTTT-A-TA-GTA--TTCTATG-CTG-ACGATACTTTTTAT--TAAT--TT-CAGA-TCAG-TG--ACG--TTTG-CAAGCATGC-CTCAAT-AGTT--TCA-------TT-----C---A---------------T--------AATGTCA-TG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTCCT-C-AAAAGGTCC-AT------CTT-CCA-AAAATG--------T-AATTTT---ACTT-T---AA--TGG--TA-C-A--------GTTA---TCTGAAACCG----TGAA----AG-ATT--T----------A-------------A-A--TA-------------TTC--------T-C-----A--GGTCCGG---ATCAT------T-TA---------AA----------AA----------------CATTTCTCTGAACAG------G-TC-AA---A-A--AAGCCATGTATGGCGTGATAC-GA-A--AA--------------ATTAG-ACAAA--TTTAATTT---T-ACCAGTAG-AATGTCAGCTAG-CCTGTTTG-ATAAAGTTG---T-TT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGGT-TTTCG-AAA--ATCAT-CGATATTATTG--AGCCGTA-TCAACTT-CA-ATT-T----------TTT----A----------A-TTTA-----------AGG----AAG-T--AGCACTC---A-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-T-TA-TTGTATAAT-AT-GTAACTGTT
gi|30 : TTTGA-CAA------A-GC-CAATAG-ATCGAGCTATGTATGGT-TTATTG-GA-A--AATGCAGAACACATATATAAATAT-AA--TCTAA-TTATTC-ATCCATTG-ATTGTAAACTTGAAATGTTTG-ATAAAGTTG---TAttaca
gi|31 : aATGTATGGAATTATAA-GA-T--AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--TAATTTAC-G-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTATaaacccattatatggatgt
gi|32 : GTATGGAATTATAA-GATAT-AA--------------ATCAG-AC-AA--TTCAA-TT---T-ACCAGTTA-AGTGCCAGCTTGATC---TTG-ACAAA-TTAAGTTATT-TTAC--C----AG--CTT--T--AATTTCG-G-GCGTGAGA-TTTGGGG--ATATG-AAA--ATT-TGCAAAATTAT
gi|34 : CA-AAA--ATC-T-TGATATTATTG--AG-CGTA-TCCACTT-AA-ATT-TCTAAAATATATTTT--TA----------A-TTTA-----------A-G----AAG-T--AGCACTC---C-----AAG--T--T---AT--A---------------TGGT-CGTTTCC------CT-TTGT---AT--T--TAACTGTT
gi|36 : A----------A-TTTA-----------A-G----AAA-T--AGTGCAC---C-----AAT--T--T---ATATG-GTTTATGGTGAAACTGGA-CGtatac
gi|4 : taatattcaaaccatatacttTAACCTTATTAGTGAAAGTCAAAC--A-GGTTTTAGAAA-GGGG-TAT---TCTAC-TACAGAC-AATATATT--AACTTT-G---CATTTTCCTA-CAA-ATA------T-GACAACTGT-TTAACAAAGAGAAACTTTTTTGTGCCTTCA-TTTA---TTTTAAACAGGCTTTTGACACTGTCTATTGAAATGGGCTGTGGTACAAATTGGTGAAAAATGGTATTAATGGCAAATGTTTTACATT--CATTAA---AAATATGTATGACGG-AGTTGAGTCTATG-GT-ATCCA--TG--AAT-GA-CCAG-TCA----T---------C---TGAATT---TTTC-------AATTGCAATGTC-GGGGTCCGTCAAG-GTGAAAA---------TGTATCTCCTCT-TTTGTTCTC-ACTG-TATATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CTGG-TAAAAA-TGT-A-TGT-----GGACTTTC----T-GTTA-----CTCC-AGTACTCCAAGCA----A-T--AAC-GAAAATA-A-AT---T-TTT----A-CTT---TTTC-TAAAA--CTTTTT-A-TA-GTA--TTCTATG-CTG-ACGATACTGTT-AT--TA-T--TT-CAGAATCAGCTG--ACGG-TTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A---------------T--------AATGTCAATG-T-TGAAAA---------AACA-----AAAATTATGG-T--------T-----TTC-T-C-AAAAGGTCC-AT------CTT-CCA-AAAATG--------T-A-TTTT---ACTT-T---AA--TGG--TA-A-A--------GTTA---T-TGAAACCG----TGAA----AGACTT--T----------A-------------A-A--TA-------------TTC--------TCC-----A--GGTCCGG---ATCAT------T-T----------AA----------AA----------------CATTTATCTGAACAA------G-GT-CA---A-A--AAGCCATGTATGGCGTGATAC-GA-A--AA--------------ATTAG-AC-AA--TTTAA-TT---T-ACCAGTAG-AATGTCAGCTAGACCTGTTTG-ATAAAGTTG---TGTT-GTAC--C----TGTACTT--T--TGTAT-G-G-TTGTGAAG-TATGGGG--TTTCG-AAA--ATC-T-CGATATTATTG--AG-CGTA-TCAACTT-CA-ATT-T----------TTTT--------------A-TTTA-----------A-G----AAG-T--AGCACTC---C-----AAA--T--T---AT--G-GTCTATGGAGAAACTGGT-CGTTTCCGGT-TACA-TTGT---AT-AT-GTAACTGTTatatcctttgt
gi|5 : T---TTTC-------A-TTGCAATGTCCGGGGTCCGTCAAGTGAAAAAAAAAAAAGTGTTTTTCTCCTCT-TTTGTTCTCGACTG-TA-ATAA---ATGAT--TTAGAAG-A-ATTTCTTG-CTGG-TAAAAAATGT-A-TGT-----GGACTTTC----T-GTTA-----CTCTCAGTACTCCAAGCA----A-T--AAC-GAAA-TA-A-AT---T-TTT----AACTT---TTTC-TAAGAAGCTTTTTGA-TAGCTCATTCTTATGGCTGGACGATAA-GTT-AT--TA-T--CTTCAAAACTAGCTG--ACGGGTTTG-CA-GCATGCCCTCAATGAGTT--TCA-------TT-----C---A------------------------AATGTCAATGTT-TGAAAC---------CACA-----AAAATTATGGTT--------T-----TTC-T-C-AAAA-GTCC-AT------CTTGCCA-AAA--G--------T-A-TTTT---ACTT-T---AAATTGG--TA-A-A--------GTTA---T-TGAAACCG----TGAA----AGAACTTAT----------A-------------A-A--TA-------------TTC--------TCC-----A--GGTCCGG---ATCAT------T-G----------TA----------AA----------------CATTTATCTG-ACAA------G-GT-CA-----A--AAGCCATTTATGGCGT--GTA-GA-ATGAA--------------ATTAG-AC-AAACTTT-A-TT---T-ACCAGAAGAAATGTCA-CTAGACCTGTTTG-ATAAAGTTG---TGTTGGTA---C----TGT--CT--T--TGTAT-A-GTTTGTGAAAGTATGGGG--TTTCGAAAA--ATC-T-CGATATTATTG--AG-CGTA-TC-ACTT-CA-ATT-T----------TTTT---A----------A-TTTA-----------A-G----AAGTT--AGCACTC---C-----AAA--T--T---ATG-G-GTCTATGGAGAAACTGGT-CG-TTCCGGT-TACA-TTGT---ATAATAGTAACTGTT
gi|6 : AAT-TTTTA--TT--TAT-AA---AAATATGTATGTTGG-GCGTAAAATCATG-TT-ATA-AACGG--AAT-GAATAGG-TTA----TGTCCGTGTGT---TGGGTT---TTTTTTTTTTTACGTGCAATGTG-GGAGTAAGGCAAG-GGGAGAA---------TTTATCTTCCTT-TCTGTTTTC-ATTA-TACATTA---ATGAC--CTTGAAA-C-ATTT-TTA-CAAGAGAAAGA-GAT-A--GTC----GGGCTT-CGAAAT-GTTT-----CTG--AGT--------CA----A-T----T-GAAAAAG-A-CT---T-AAT----G-ATT---TACC-TGAAA--CTGTTA-A-TC-CTA--TTGTATA-CTG-ATGGCAGTTAT-AT--TA-G--CT---GAATCCGCTG--AAGA-TTTA-CA-ACAGGCGTTAAATAAATTCTTCACATATTGTT-----C---AGAGTGGAAATTGAATT--------AATATTAATA-T-TGAAAA---------AACC-----AAAGTTATGA-T--------T-----TTT-TTC-AAAGGGTCCTAT------AAT-GAA-GAAATG--------T----TTT---ATTA-C---AA--TGG--AA-A-T--------ATTA---T-TGAGAATG----TTAA----GGAATT--C----------A-------------A-A--TACTTAAGCATATTATTT--------TCT-----A--GATCAGG---CTCTT------T-TTACAAAGCCAAA----------AA----------------CATCTCTGTGAACAA------G-CC-CA---G-A--AAGCTATGTATGGTGTTATAA-GG-A--AA--------------ATCAG-AC-AA--TTTAA-TT---T-ACCAATTA-AATGTCAACTTGATCTGTTTG-ACAAAGT-----CATT-TTAC--C----TGTATTA--A--CTTAT-G-G-GTACGAAA-TTTGGGG--ATACG-AAA--ACT-TACAA-ATTATtttatc
gi|7 : GGAGTTATTA-GA-A--GA--------------ATAAG-AC-AA--TTTAA-TC---T-ACCTATCG-ACTGCCAGTCAGATTTCCTTG-ATAAAGTTG---TA---ACAC--C----AGT-CTTA-T--TATGT-G-G-TTGTGAAA-TATGGGG--TTATG-AAA--ACC-T-TGAACTTATTA--AA-CGCATTCA--TC-TA-ATT-T----------TTTTG-AA----------A-TTTA-----------
gi|7 : --AA-CGCA-TTCACCT-AA-ATT-T----------TTTTTGAA----------A-TTTATTCTATGTTTAA-A----AAG-T--TGTACTCTTTC-----A----TG-T---AT--G-GTTTATGGGGAGGCAGGT-CGATTCT---------CTTT---AT-AT-GTCATTGTTttctatgtttaaaaagncaaacgcattcacctaaattttttttgaaatttattctatgtttaaaaagttgtactctttcatgtatggtttatggggaggcaggtcgattctctttatatgtcattgtttatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|8 : ggagttattagaagaataagacaatttaatctacctatcgactgccagtcagatttccttgataaagttgtaacaccagtcttattatgtggttgtgaaatatggggttatgaaaaccttgaacttattaaacgcattcatctaatttttttgaaatttattctatgtttaaaaagncaATGGGG--TTATG-AGA--ATA-T-TGATAATATTA--AC-GGTT-TCA--TC-CACGTT-T----------TTTT--AACAACATACTTA-TCTA-----------A-A----GAG-T--AGCACGC---C-----AAGCTT--T---AT--G-ATTTAGGGTGAATCTGG----------GA-TACCCTTGT---AT-AT-ACAATTTTTtatactagaatggtttcatactgggcaaagttgttctcaggtccagaaaacaaaactgcatatattttatacaagtatttggaacgagcagggtactaggtattatcgatgtgacatggtttacaaagacagttaaacaaagattggaagatcaatttatacagaaatggtcgactgacattaactgcccagccaagggtcatatgtatacatttttggatatgagaaatatttagatatcttacctacaaaaaaattaaatttggaaaaatgattgttagatttagaacttcgaatcattgtctaccaatagagactggtagatgatggggtattcc
gi|9 : TCTGTGAACCA------G-CA-CA---G-A--AAGCAATGTTCGGAGCTATTA-GA-A--AA--------------ACAAG-AC-AA--CCTAA-TT---T-ACCTATCG-ACTATCAGTTTGATTTATGTG-ATAAAGTTG---TA---GTAC--------AAAGTTTAT--TACAT-G-G-TTGTGAAA-TATGGGT--TTATG-AAC--A-C-A-C-ATATC-TT---AG-AGT------TTT-GA-ATTAT----------ATTT--GA----------ACTTTA-----------A-A----AAG-T--TGTACTC---CTTCATATA--T--T---A-------TTATGGAGAAACCGAT-Cacaaaaatgatctcttattgggaaagcttgcagttcaataacaatgacaacaaattgataaagttgtttaatgtttgtatttaacatgcatgaatagggaaaataagaaatccatgaattcatggtttgaaaagtattttggacaatgtgcctctcaaaacattaacacgcagttataacgcaacgtattttaaagtcaagtgttaaccaaaggctatgagattcaattttacaaaaattggcagaaggatatatctatgcttcaaaagggtaattacaaaatttcaaaagaaaatttgaatgtattaatattccacattattaccaagaacggtacgaaaaatctccaatagttttgaactacaaaccatcaccttgctgttgagttaggcagatggaataaaaggatgaacgcttttgatatattatgcaactgtaaccaaattggagatgaatttcattatttttgaatg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTCAAAACTGAATTTGGATTAGAGAAATACCTAAAATGAATAGAACAGTATTTATTTTATTGAATTCAGAACTGCAAATCACCGACTCCCAGTCGAGACTGGAAAATGGTGTGGCACTCCAAAACATGAGAGAATTTGCCATATCTGTAAAACGAATCAAATAGCTGATGAGTATTTATATATACTTTTGAATGCCAGTTTTTTGAAGAGTGGCGAAAAAAATATCTGTGTAAAAATATTGTTTTAAACCAAACTATTATAAATTTTCCGAATTATTGTCAACTGCTGACTCCAATGTACTTGTCAAATTGTGTAGTTTTATATCTAAAATATATGACCAAGTCTGTCCTCCTTGACCTGATATTACTCTGCTTTCATGTGTACATTGTATATTGTTTCAATTTGTATATATTGTTTATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGAACTTG
Unaligned ( gi|12 ): ATATTATTGACATTCAGCATGCAAATCACCGACTCTCCGGTCAAGACTGGCAGATGTTGCGTGGCACTCCAAAACATGAGAGATATTGCCATATCTGATAAAACGAATCAATAGCTGATGAAATAGAGTTTATATTCCTTGAATGCCATTTTTTCGGAAGAATGGCCAAAAATAAAAATAGTCTGATATAAAAAGATTTTTAGGAAACCAAACTATTAAAATTTTCTGAGATTAATTGTCATGGAATGAAATGTACATTTAATCGACTCTTTTATCATTTCCATGATAAAAGTCATCTACTACAAATATGACCAGAATTTTTCCTCCCTTGATTCATCTCAATTCATCTGATTTCTGCTTCTTTCAGGTGACCTTGTACATGTAATATTGTTTCGAATTTGTATATATTGTATATAGAACCTCATGTACCATTAAGTGGTGTGAGAGAAATAAACTGGAACTTGA
Unaligned ( gi|17 ): AAAATATCTGTGTAAAAATATTTTTATAAACCAAACTATTGCAAATTTTCTGAATTATTGTCAACTGCTGGACTCCATGTACTTGTCAAAATGTTGTTGGTTTGATATCTAAAATATTTATGGACCAAGTCTGTCTCCTTATTCATCTCAAGTATCTGATAATTTTTACTCTCTGATTTTTCTGTGTATACCTATTGACATTATTTGTTTCACATTTTGTTATATATTGTATTAGTAGAATCATGTACCTTTAGAGTGGGGTTGAGAGAAATAAACTGAACTACT
Unaligned ( gi|20 ): AAAAAAATATTTTAGTCCAAATCTCAGGTGCGAACCATTCCTGTCAAGAAGCGGAAAGTTTGCTTTTAACAGAAGTATATTAAACTTGTATTGAAAGGTCTTTACGCTAGATCATTATTTTTCATGGTTCGTGGTTCGAGCTCTTTATTACTTGTCGGCTAGACGTGATAGATACATGTAAAATCATCAACCCAATCTTATCTTATTTGTGAGATTTCGATTTATTACTGAAAAGGTACACCTAAAATC
Unaligned ( gi|24 ): AGCTGACTCCAATGTACTTGTACAAATTGTGTAGTTTTATGTCTAGTCTGTCCTCCTTGATTCATCTCATTCATCTGATATTACTCTGCTTTTTCATGTGTACCTTGTACATGTATATTGTTTCAATTTGTATATATTGTATATAGAACCTCATGTACATGTACCATTAAGTGGTGTGAGAGAAATAAATAAACTGAAAA
Unaligned ( gi|26 ): AAGAATATCTCACTGGGCAAAACTGCTTTTAAGTCCAGATAGTAAGATTGTGTATGTTTTATATAAGTTTTTATATGATCAATTCTGTGAAAGAAATTTTATGAATTCTTAGCTATCATGTAACAAAATATTTTAGATACTTGTGGGTATTCCCAAC
Unaligned ( gi|27 ): TCCTCCGTAATTCATTTCAATCATCTAAAATGGCTATCATGCTCTTTTCACACCATGTACCTTGTATATATTGTTCCTAACTGTATGAATATACAAGTACTGTAAATAGAACCTCATGTACCATAGCGTGGCATGAGAGAAGTATACTAAAGTTGA
Unaligned ( gi|29 ): TGTAGTTTTTAATATCTTAATACATGAACCTAAGTCTGTCCTCCTTTGAATTCATCTCAAGTGCATTCTGATTCTGCTTTTTTCATGTGTAGCTTTGTAGTATTTTTTTCAGTTGTAATATATTGTATAAGGAACCTCATGGTGGTGCAGAGAA
Unaligned ( gi|33 ): ACTCCCATTCGTGATTGAAAGATGGTATGGCACTCAAAAATGGAAAGGACGTGTCATATCAATGATACATGTAGCGATCATCTAGCCGACGAATATGACTATGTTCTAGATAGCCAGGATTTTG
Unaligned ( gi|35 ): TAAAGATCAGTATATTTACAGAAATGGCAAGTATATTCATGATTCTTTTAATAAGATATACAGTATTTTCAGAAGCCTATTACTTAGGAATGTATATACT
Unaligned ( gi|37 ): CAAATTATTTTAATTCAAATTTTTCGTATCATGGTGAACTGCTGATTCCGGTGAAAGACATGAAATTGTGTAATTTCACAT
Unaligned ( gi|38 ): TCCTGAAATATATTTTATGTATGAAAAGTAGTATACCTTCGTATATGGTTTATGGTGAATCAGGTC
Unaligned ( gi|39 ): CTATATAGAACCTCATGTATCATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACT
Unaligned ( gi|40 ): TGCTTTTTCATGTGTACATAATGTATATTGTTTCAATTTGTATATATTGT
Unaligned ( gi|41 ): AAAGAATTTGCCATATCTGTAAAACTAATCAAAATAGCTG
Unaligned ( gi|42 ): CATTAAGTGGTGTAAGAGAAATAAATTGAACTTGAACTTA