lowQualScore : 4 4 4 8 3 2 555 2 33 33 555 3 3 3 6 44 3 3 88888 99 6 3
lowQualScore : . . . . . . ... . .. .. ... . . . . .. . . ..... .. . .
lowQualScore : 4 0 0 0 1 8 000 9 77 99 444 3 3 3 7 66 3 3 33333 22 2 3
consensus : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTT
Reference ( gi|8 ) : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ATT-ACTTTT
gi|2 : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTCG--AA-ATT-TTCT-----AGTCAT--ACTAACTTTT
gi|7 : ttgtggGACTGGTTG-ACCC--TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--TA--C--TTTACATTTGT-ATTTG-T-TGTACTTTCG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTtc
gi|4 : GACTG-TTTTACCCC-TTAACAAGGCCAAGTT-GGTGGATTTT----AC-CAT--AA--C--TTTACATTTGT-ATTTG-TGGGTAC-TTAG--AA-ATT-TTCT-----AGTC-T--ACT-ACTTTT
gi|5 : tggGACTG-ATG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGA-TTT---TAC-CAT--AA--C---TTAC-TTGGT-ATTTG-T-GGTAC-TTAG--AA-ATTCTTCT-----AGTCAT--ACT-ACTTTtcta
gi|9 : atGACTG-TTG-ACCCCCTTA-CAAGGCCAAGTT-GGTGGA-TTT---TAC-CAT--AA--C----------------TTG-T-TGTAC-TTAG--AG-ATT-TTCT-----AGTCAT--AAT-ACTTTTcttcta
gi|3 : ggGACTG-TTG-ACCCC-TTAGCAAGGCC-AGTT-GGTGGATTTTTTATAC-CATAAAA--C---TTACAATTGG-A-TTG-T-GGTAC-TTAG--AACATT-TTCT-----AGTCAT--ACA-ACTTTTtctaa
gi|13 : gtgGACTG-TTG-ACCCC-TTA-CAATTCCAAGTT-AGTGGATTTT---TAC-CAT--AA--C--TTTACATTTct
gi|16 : tgtggGACTG-TTG-ACCCC-TTA-CAAGGCCAAGGT-GGTGATTTTT---TAC-CAT--
gi|6 : gTG-TT--ACCCT-TTA-CAAGGC-AAGTT-GGTGGATTTT---ATC-CAT--A---C--TTTACATTTTT-ATTT--T-TGTAG-TTAG--AA-ATT-TTCT-----AG-CATGAATT-ACTTTT
gi|14 : gtggaTG-ACCCC-TTA--AAGGCCA-GTT-GGTAGGTTTT---TATACAT--AA-----TTTACATTttct
gi|1 : ccttgtgggtgAAGTTTGGTGGCATTT---TAC-CAT--AA--CACTTTACATTTGT-ATTTG-T-TGT---CTAGTTAA-ATT-TTCT-----AGT-ATAAATT-ACTTTTg
gi|12 : ggctatttcagctcttaaaataaaTT-GGTGGAATTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAG-TTAG--AA-ATT-TTCT-----AGTCAT--AAT-ACTTTTctataaa
gi|10 : TT-GGTGGATTTT---TAA-CAC--AATAC--TTTACATTTGT-ATTTGTT-TGTACATTAG--AA-ATT-TTTTTCCTAAGTCAT--ACT-ACTTTTtct
gi|11 : GTTGACTTT---TAA-CAT--AA--C--TTGACATTTGT-ATTTG---TG-AG-TTAG--AA-TTT-TTCT-----TGTCGC--AAT-ACTTTTttct
gi|15 : ttT--AA--C--TTTA-ACTTGTTATTTG-T-TGTAC-TTAG--AA-A-T-TTCT-----AGTCAT--ACT-ACTTTTtaatttt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GTAGAAAAATTCATCTTTCACTAGGGAAAGATCATCTTT
Alignments
lowQualScore : 4 3 3 7 2 2 444 2 33 33 444 3 3 3 6 44 3 3 77777 88 3
lowQualScore : . . . . . . ... . .. .. ... . . . . .. . . ..... .. .
lowQualScore : 0 6 6 3 9 0 777 7 44 77 555 1 1 1 2 22 1 1 77777 55 1
consensus : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTT
Reference ( family-10251 ) : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTT
gi|1 : AAGTTTGGTGGCATTT---TAC-CAT--AA--CACTTTACATTTGT-ATTTG-T-TGT---CTAGTTAA-ATT-TTCT-----AGT-ATAAATT-ACTTTT
gi|10 : ggctatttcagctcttaaaataaaTT-GGTGGATTTT---TAA-CAC--AATAC--TTTACATTTGT-ATTTGTT-TGTACATTAG--AA-ATT-TTTTTCCTAAGTCAT--ACT-ACTTTTctataaa
gi|11 : GTTGACTTT---TAA-CAT--AA--C--TTGACATTTGT-ATTTG---TG-AG-TTAG--AA-TTT-TTCT-----TGTCGC--AAT-ACTTTTttct
gi|12 : ttTT-GGTGGAATTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAG-TTAG--AA-ATT-TTCT-----AGTCAT--AAT-ACTTTTtaatttt
gi|13 : GACTG-TTG-ACCCC-TTA-CAATTCCAAGTT-AGTGGATTTT---TAC-CAT--AA--C--TTTACATTTtct
gi|14 : tgtggTG-ACCCC-TTA--AAGGCCA-GTT-GGTAGGTTTT---TATACAT--AA-----TTTACATT
gi|15 : ccttgtgggtgT--AA--C--TTTA-ACTTGTTATTTG-T-TGTAC-TTAG--AA-A-T-TTCT-----AGTCAT--ACT-ACTTTTg
gi|16 : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGGT-GGTGATTTTT---TAC-CAT--ctctaa
gi|2 : gGACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTCG--AA-ATT-TTCT-----AGTCAT--ACTAACTTTT
gi|3 : ttgtggGACTG-TTG-ACCCC-TTAGCAAGGCC-AGTT-GGTGGATTTTTTATAC-CATAAAA--C---TTACAATTGG-A-TTG-T-GGTAC-TTAG--AACATT-TTCT-----AGTCAT--ACA-ACTTTTtc
gi|4 : gtgGACTG-TTTTACCCC-TTAACAAGGCCAAGTT-GGTGGATTTT----AC-CAT--AA--C--TTTACATTTGT-ATTTG-TGGGTAC-TTAG--AA-ATT-TTCT-----AGTC-T--ACT-ACTTTTct
gi|5 : tggGACTG-ATG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGA-TTT---TAC-CAT--AA--C---TTAC-TTGGT-ATTTG-T-GGTAC-TTAG--AA-ATTCTTCT-----AGTCAT--ACT-ACTTTtcta
gi|6 : atTG-TT--ACCCT-TTA-CAAGGC-AAGTT-GGTGGATTTT---ATC-CAT--A---C--TTTACATTTTT-ATTT--T-TGTAG-TTAG--AA-ATT-TTCT-----AG-CATGAATT-ACTTTTcttcta
gi|7 : gtggaGACTGGTTG-ACCC--TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--TA--C--TTTACATTTGT-ATTTG-T-TGTACTTTCG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTttct
gi|8 : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ATT-ACTTTT
gi|9 : GACTG-TTG-ACCCCCTTA-CAAGGCCAAGTT-GGTGGA-TTT---TAC-CAT--AA--C----------------TTG-T-TGTAC-TTAG--AG-ATT-TTCT-----AGTCAT--AAT-ACTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTAGAAAAATTCATCTTTCACTAGGGAAAGATCATCTTT
Alignments
lowQualScore : 4 3 3 7 2 2 444 2 33 33 444 3 3 3 6 44 3 3 77777 88 3
lowQualScore : . . . . . . ... . .. .. ... . . . . .. . . ..... .. .
lowQualScore : 0 6 6 3 9 0 777 7 44 77 555 1 1 1 2 22 1 1 77777 55 1
consensus : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTT
Reference ( family-10251 ) : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTT
gi|1 : AAGTTTGGTGGCATTT---TAC-CAT--AA--CACTTTACATTTGT-ATTTG-T-TGT---CTAGTTAA-ATT-TTCT-----AGT-ATAAATT-ACTTTT
gi|10 : ggctatttcagctcttaaaataaaTT-GGTGGATTTT---TAA-CAC--AATAC--TTTACATTTGT-ATTTGTT-TGTACATTAG--AA-ATT-TTTTTCCTAAGTCAT--ACT-ACTTTTctataaa
gi|11 : GTTGACTTT---TAA-CAT--AA--C--TTGACATTTGT-ATTTG---TG-AG-TTAG--AA-TTT-TTCT-----TGTCGC--AAT-ACTTTTttct
gi|12 : ttTT-GGTGGAATTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAG-TTAG--AA-ATT-TTCT-----AGTCAT--AAT-ACTTTTtaatttt
gi|13 : GACTG-TTG-ACCCC-TTA-CAATTCCAAGTT-AGTGGATTTT---TAC-CAT--AA--C--TTTACATTTtct
gi|14 : tgtggTG-ACCCC-TTA--AAGGCCA-GTT-GGTAGGTTTT---TATACAT--AA-----TTTACATT
gi|15 : ccttgtgggtgT--AA--C--TTTA-ACTTGTTATTTG-T-TGTAC-TTAG--AA-A-T-TTCT-----AGTCAT--ACT-ACTTTTg
gi|16 : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGGT-GGTGATTTTT---TAC-CAT--ctctaa
gi|2 : gGACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTCG--AA-ATT-TTCT-----AGTCAT--ACTAACTTTT
gi|3 : ttgtggGACTG-TTG-ACCCC-TTAGCAAGGCC-AGTT-GGTGGATTTTTTATAC-CATAAAA--C---TTACAATTGG-A-TTG-T-GGTAC-TTAG--AACATT-TTCT-----AGTCAT--ACA-ACTTTTtc
gi|4 : gtgGACTG-TTTTACCCC-TTAACAAGGCCAAGTT-GGTGGATTTT----AC-CAT--AA--C--TTTACATTTGT-ATTTG-TGGGTAC-TTAG--AA-ATT-TTCT-----AGTC-T--ACT-ACTTTTct
gi|5 : tggGACTG-ATG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGA-TTT---TAC-CAT--AA--C---TTAC-TTGGT-ATTTG-T-GGTAC-TTAG--AA-ATTCTTCT-----AGTCAT--ACT-ACTTTtcta
gi|6 : atTG-TT--ACCCT-TTA-CAAGGC-AAGTT-GGTGGATTTT---ATC-CAT--A---C--TTTACATTTTT-ATTT--T-TGTAG-TTAG--AA-ATT-TTCT-----AG-CATGAATT-ACTTTTcttcta
gi|7 : gtggaGACTGGTTG-ACCC--TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--TA--C--TTTACATTTGT-ATTTG-T-TGTACTTTCG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTttct
gi|8 : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ATT-ACTTTT
gi|9 : GACTG-TTG-ACCCCCTTA-CAAGGCCAAGTT-GGTGGA-TTT---TAC-CAT--AA--C----------------TTG-T-TGTAC-TTAG--AG-ATT-TTCT-----AGTCAT--AAT-ACTTTT
blockSeqs : G T C G . T TTA A AA TA T T T G A . C C TCCTA GA A
blockSeqs : . . . A . C . . . . T . . . T . . . . . .
blockSeqs : . . . . . A . . . . T . . . . . . . . . .
blockSeqs : . . . . . T . . . . T . . . . . . . . . .
blockSeqs : . . . . . T . . . . T . . . . . . . . . .
blockSeqs : . . . . . T . . . . T . . . . . . . . . .
blockSeqs : . . . . . T . . . . T . . . . . . . . . .
blockSeqs : . . . . . T . . . . T . . . . . . . . . .
blockSeqs : . . . . . T . . . . T . . . . . . . . . .
blockSeqs : . . . . T . . . . T . . . . . . . . . .
blockSeqs : . T . . . . T . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons : T** ** **
originalCons : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTT
finalCons : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--CT--TTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTAGAAAAATTCATCTTTCACTAGGGAAAGATCATCTTT
Alignments
lowQualScore : 4 3 3 7 2 2 444 2 33 33 444 3 3 3 6 44 3 3 77777 88 3
lowQualScore : . . . . . . ... . .. .. ... . . . . .. . . ..... .. .
lowQualScore : 0 6 6 3 9 0 777 7 44 77 555 1 1 1 2 22 1 1 77777 55 1
consensus : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTT
Reference ( family-10251 ) : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTT
gi|1 : AAGTTTGGTGGCATTT---TAC-CAT--AA--CACTTTACATTTGT-ATTTG-T-TGT---CTAGTTAA-ATT-TTCT-----AGT-ATAAATT-ACTTTT
gi|10 : ggctatttcagctcttaaaataaaTT-GGTGGATTTT---TAA-CAC--AATAC--TTTACATTTGT-ATTTGTT-TGTACATTAG--AA-ATT-TTTTTCCTAAGTCAT--ACT-ACTTTTctataaa
gi|11 : GTTGACTTT---TAA-CAT--AA--C--TTGACATTTGT-ATTTG---TG-AG-TTAG--AA-TTT-TTCT-----TGTCGC--AAT-ACTTTTttct
gi|12 : ttTT-GGTGGAATTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAG-TTAG--AA-ATT-TTCT-----AGTCAT--AAT-ACTTTTtaatttt
gi|13 : GACTG-TTG-ACCCC-TTA-CAATTCCAAGTT-AGTGGATTTT---TAC-CAT--AA--C--TTTACATTTtct
gi|14 : tgtggTG-ACCCC-TTA--AAGGCCA-GTT-GGTAGGTTTT---TATACAT--AA-----TTTACATT
gi|15 : ccttgtgggtgT--AA--C--TTTA-ACTTGTTATTTG-T-TGTAC-TTAG--AA-A-T-TTCT-----AGTCAT--ACT-ACTTTTg
gi|16 : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGGT-GGTGATTTTT---TAC-CAT--ctctaa
gi|2 : gGACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTCG--AA-ATT-TTCT-----AGTCAT--ACTAACTTTT
gi|3 : ttgtggGACTG-TTG-ACCCC-TTAGCAAGGCC-AGTT-GGTGGATTTTTTATAC-CATAAAA--C---TTACAATTGG-A-TTG-T-GGTAC-TTAG--AACATT-TTCT-----AGTCAT--ACA-ACTTTTtc
gi|4 : gtgGACTG-TTTTACCCC-TTAACAAGGCCAAGTT-GGTGGATTTT----AC-CAT--AA--C--TTTACATTTGT-ATTTG-TGGGTAC-TTAG--AA-ATT-TTCT-----AGTC-T--ACT-ACTTTTct
gi|5 : tggGACTG-ATG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGA-TTT---TAC-CAT--AA--C---TTAC-TTGGT-ATTTG-T-GGTAC-TTAG--AA-ATTCTTCT-----AGTCAT--ACT-ACTTTtcta
gi|6 : atTG-TT--ACCCT-TTA-CAAGGC-AAGTT-GGTGGATTTT---ATC-CAT--A---C--TTTACATTTTT-ATTT--T-TGTAG-TTAG--AA-ATT-TTCT-----AG-CATGAATT-ACTTTTcttcta
gi|7 : gtggaGACTGGTTG-ACCC--TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--TA--C--TTTACATTTGT-ATTTG-T-TGTACTTTCG--AA-ATT-TTCT-----AGTCAT--ACT-ACTTTttct
gi|8 : GACTG-TTG-ACCCC-TTA-CAAGGCCAAGTT-GGTGGATTTT---TAC-CAT--AA--C--TTTACATTTGT-ATTTG-T-TGTAC-TTAG--AA-ATT-TTCT-----AGTCAT--ATT-ACTTTT
gi|9 : GACTG-TTG-ACCCCCTTA-CAAGGCCAAGTT-GGTGGA-TTT---TAC-CAT--AA--C----------------TTG-T-TGTAC-TTAG--AG-ATT-TTCT-----AGTCAT--AAT-ACTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTAGAAAAATTCATCTTTCACTAGGGAAAGATCATCTTT