lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4 33333 1 1 1 1 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 333333333 11 1 33333333333 222222 33333333333333333333333 3333333 1 3333 2 1 1 11 11 1 22222
lowQualScore : 0 77777 7 6 7 77 666 0 0 3 444 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 666666 9999 777 444444444 0 55 1 11111111111 2 000000 8 8 33333333333333333333333 6 1111111 1 3333 0 0 0 0 88 88 2 5 66666 4 2
lowQualScore : . ..... . . . .. ... . . . ... ......................................................................................... . ...... .... ... ......... . .. . ........... . ...... . . ....................... . ....... . .... . . . . .. .. . . ..... . .
lowQualScore : 0 00000 0 0 0 99 000 9 1 4 888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 333333 4444 888 999999999 8 11 4 00000000000 8 888888 0 0 22222222222222222222222 7 5555555 3 8888 8 4 5 0 00 00 5 0 55555 0 5
consensus : NATTATAACAGTATACAGTTATGTGACTGGGT--TCGAGAACAACAGCTGTTTTGTTTGACCCGATA--ACGG--A------NTC-------GT---A-GGCC-----------------G--A----------T--------CCGT------TNTAT--G-GTCAAAC-AAA---A--CA----GC---TGT-----TG-CCGAGGACGCAGTC-TATAACTG-T-TT--GTTATATACGCC-----TT-CA-TTCTTT----T--NAGCTTGT----T---TTT-CTN----A-ATGCACATGGTTTGT-AGATTTTGAACTTTAAACA-GACAGTNNNNNNNNNNNNAATATTCCTAATATCCTGTAATTANTACGTGCGGTTATATTTTTCGTGNTTCTGCTCTGCGTTTCATCCAAT
Reference ( gi|3 ) : TATTA-AACATT-T-CAGATAT-TAACAGGGT--TTGGGAACAACAGATGTTTTGTTTGACCCGATA--ACGG--A------GTC-------GT---A-GGCT-----------------G--A----------T--------CCGT------TATAT--A-GTCAAAC-AAA---G--CA----GC---TGT-----T---CGAGGATACAGTC-TATAACTG---TT--GT--TGTACGCC-----TT-CA-TTCTTT----T--GGGGTTGT----T---TTT-CTA----A-ATGCAAATGGTTTGT-TTATTTTGAACTTTTAACA-GACAGTTACCACTAAGAAAATATTCCTAATATCCTGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAAT
gi|8 : ATTATAACAGTATACAGTTAT-TGAATGAGT--TCGAGGGTAACAGATGTTT-----GACTCGAAG--ACAG--ATATTTTGTCCGCAGCAGT---A-GGCT-----------------G--AAGACAATAGAT--------TCGT------TCGAG--G-GTCAAAC-AAA---A--CA----GC---TGT-----TGTCCAAGGAAACATTT-TATAGCTGTT-TT--CT--CATACATC-----TT-CA-GTCTTTTAGAT--GAGCTTTTTCCCT---TTT-CTACTTTACATGCACATGGTTTGT-AGATTTGGAACTT
gi|14 : tgaT-T-CAATTAT-TGAATGGGT--TCGAGAGCAACAGCTGCTTTGTTTGACCCG------CGG--A----------------AT---A-AGCT-----------------GTTA----------C--------CCGa
gi|2 : ataatattaTATGTAACTGGATCCTTGG--ACAGCAGCTGTTTTG--TGACCAGATA--ATGG--A------TTCTT-----GTGCGA-GGCCATGGACCAAGGACATCAG--A----------T--------GCAT------T-TAT--AGGTCAAAC-AAAATTA--TA----GA---TGT-----TGCCCGAGGAaagcaaaaggctgaaggcaacagttcagttcaagtgtcaaacat
gi|7 : agaaaattgatgaactttatgaagaaaatttggaactgaaaaggttgatcaaagacaatgtggacagcaaagccgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattcatttagtatttcgaatgtaacagaatttatatctgtaacgtTATGTAACTGGAT--CCTTGAACAGCAGCTGTTTTGAGCGACCAGATA--ATGG--A------TTC-------
gi|17 : cagaaaattaatgaactttatgaagaaaatttagaactgaagaggttggtcaaagacaacgtggacagcaaagctgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattaatttagaatttcgaatgtaacagaatttatatatgtgacgtTAT-TGACTGGGT--TTGAGGACCA-AGGTGATTTGTTTGACctgtccgaggccgtaggccaaggacatcag
gi|9 : gtGGT--TCGAGAGCAACAGCTTTTTTGTTTTACCC-ATAGGACGGGAA------CTT-------TT---A-C-CC-----------------G--A----------A--------CCGTACGCTCTACATCGG-GTCAAAC-CAA---A--CA----GC---TGT-----TGTTCGTGGACACAGTC-TGTAACGGGTTTT--GTTATATACACC-----TTGCA-TTTTTT----TAAAAGCCTGT----T---TTCACTT----T-ATGCACATTGTtttggaataaatctgttacc
gi|8 : atacagttatactgc--TTGG--ACAACAGCTGTTTTGTTTGACCC
gi|9 : tgaattataacagtatacagttattgaatgagttcgagggtaacagatgtttgactcgaagacagatattttgtccgcagcagtaggctgaagacaatagattcgttcgaGAACAACAGCTGTTTGGTTTGACCCGAT---GTAG--A------G-C-------GT---ACGGTTCG---------------G--G----------TAAAAGTTCCCGT------CCTATG-G-GTAAAAC-AAA---A--AA----GC---TGTTGCTCT---CGA-ACCGCAG---TATAACTG---Tggaaacattttatagctgttttctcatacatcttcagtcttttagatgagctttttcccttttctactttacatgcacatggtttgtagatttggaactta
gi|13 : at--A----------T--------CCGT------TATAT--A-GTCAAACGAAA---G--CA----GC---TGT-----T---CGAGGAT-CAGTC-TATAACTG---TT--GT--TGTACGCC-----TT-CA-TTCTTT----T--GGGTTTG-----T---TTT-CTA----A-A-GCAAATGGTTTG--TTATTTTG-ACTTTTAACA-Ggtggacacagtctgtaacgggttttgttatatacaccttgcatttttttaaaagcctgttttcactttatgcacattgt
gi|1 : --A----------T--------CCAT------TTGAA--A-GTCAAAC-AAA---AAACATACTGT---TGT-----C---TGTAGACACAATCCTGTAATTG---TTTTGT--TATACACCCGTCCTT-CA-TTCTTT----T--TAGTTTCT----T---TTT-CTCT---A-ATGCACATGGTTTACAGAATTGTGAAC-TTAAACA-G
gi|7 : --A----------T--------CCAT------TATCT--G-GTCGCTC-AAA---A--CA----GCTGCTGT-----T---CAAGGATCCAGTTACATAACgattagcttgtgatggccatacatttattcccattcgtatccatgaaattgaaaagaattgaatatacaaatacccttattcaataatgattatcttttgtggttttgctctgcttctcatcttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|14 : cagaaaattaatgaactttatgaagaaaatttagaactgaagaggttggtcaaagacaacgtggacagcaaagctgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattaatttagaatttcgaatgtaacagaatttatatatgtgac-GTCAAAC-AAA---G--CA----GC---TGT-----T---tcctgtccgaggccgtaggccaaggacatcag
gi|10 : ataatattattcaattattgaatgggttcgagagcAGC-AAA---A--CT----GC---TGT-----TATCCGTGGA--CAGTC-TATAACTGTT-TT--GTTATATACGTC------T-CATTTCTTT----T--TAGATTGG----TATATCT-CTA----G-ATGCATATGA--CGT-AGATTTTGAAA-TTAAACA-Gccgcggaataagctgttacccgaagcaaaaggctgaaggcaacagttcagttcaagtgtcaaacat
gi|12 : tcgagggttcT----T---TTT-CTT----G-ATGCACATAGTTTGT-AGATTTTGAAC-TTAAACAGGACAGTgaaggtgtgattgtgcacatttatc
gi|6 : tttttagaaattatAATATTCCTAATATCCTGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAATgtgactgcatacatttatcatcatatccactagtttaaaagaattaaacttactcaatat
gi|5 : ATAT--CTAATATCCT--AATTAATA-ATGC-----TATTTTTCGTGATTCTGCTCTGCTTTTCATCTAaccagtgaacttcgccattacatagacaaagcagcagactaagaatcacgtgatttgcacagccaatgaaaataggacagactattgttcggtcaacatctgaaaaactgttgaccacgagggtgtgagttggttcaacagttaaaatgttgtttctaaatcgtataagtatattataaaacgtatatacaacat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): ATTTTTCGTATTATCTTGACTTCCTTTCGTTTCAATAAAGTCTCTATTTATCATCACTAAAAATTCATTGAACCTCGCCATTGTTCATGATTACTAAACATAGCAGTCGGACTAAATATCCCGTGACCGTCGTAGCCAATAGAATGGACAGCTATTGCACGGTCAATAGTTCGTAAAATGTTGACCGCTGCAATAGATGACGTGTGAAACGTTGTTTTAACAGTTAAAATGTGTGGTTATTAACTCTATTATTTTTATATTAAAAATATAATTGTTATACACAACAC
Unaligned ( gi|11 ): TCTCATGCTTCTGCTGCCAGTTTCATATAACAAATTCTGTATTTCATTATCAGTCAAATTAGTGAACCTAACCATTATGTAAACAAAGAAGCAGACTGGGAATCACATATCTTGCTTAGCCAATAGAAAT
Unaligned ( gi|15 ): TGATATCATGTAGTTATTGAATGGGTGCGAGGGCAACAATTAATTTGTCAGCCTCGAGACATGGGCTGTTCTCCAAGT
Unaligned ( gi|16 ): TTGTAAGTTGCTCTCTTGTGATGCGCATGGTTTGTAGATTTTCAACTTTAAGAGAACAGTGTGATTGCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1111111111111111 2 2222222222222222222222222222222222222222222222 2222222222222 111111 333 1 22 1111 1111 11111 111111111 111 1111 111111111111 1 11
lowQualScore : 0 8888888888888888 5 0 5 0 0 0 1 99 9999999999999999999999999999999999999999999999 2222222222222 666666 5 111 5 2 7 6 99 00 4 9 1111 6 6 2222 888 8 22222 888 5 777777777 0 5 9 000 7777 222222222222 8 0 8 5 1 55 444 77 1 2 2
lowQualScore : . ................ . . . . . . . .. .............................................. ............. ...... . ... . . . . .. .. . . .... . . .... ... . ..... ... . ......... . . . ... .... ............ . . . . . .. ... .. . . .
lowQualScore : 8 1111111111111111 7 4 7 6 7 3 7 22 9999999999999999999999999999999999999999999999 4444444444444 777777 7 111 7 1 3 7 22 77 2 8 2222 7 7 1111 999 9 66666 888 0 555555555 4 0 4 000 9999 000000000000 0 8 0 0 0 22 888 55 0 0 5
consensus : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--A------NTCCT-----GT-CGAGGCC---GAC-A---------GATCCGT----TNTAN----GGTCAAACAAA---A--CA-GCTGTTGTCC-GNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--GAGNTTGT----T---TTT-C----TN-G-ATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GACAGTGTNCATTCGTAAA-ATATTC-CTAATATCCTGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
Reference ( family-1025 ) : NATTATAACAG----TATACA------GTTATGTGACTG-GGTTCGAGAACAACAGCTGTTTTGTTTGACCCGATA--ACGG--A------NTC-------GT---AGGCC-----------------GATCCGT----TNTAT----GGTCAAACAAA---A--CA-GCTGTTG-CC-GAGGACGCAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--NAGCTTGT----T---TTT-C----TN-A-ATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GACAGTNNNNNNNNNNNNA-ATATTC-CTAATATCCTGTAATTANTACGTGCGGTTATATTTTTCGTGNTTCTGCTCTGCGTTTCATCCAAT
gi|1 : ATCCAT----TTGAA----AGTCAAACAAA---AAACATACTGTTG-TCTGTAGACACAATCCTGTAATTG--TTTTGTTATACACCCGTCCTT-CA-TTCTTT----T--TAGTTTCT----T---TTT-C----TCTA-ATGCACATGGTTTACAGAATTGTGAAC-TTA---AACA----G
gi|1 : AATACCCT-TATTCAATA---ATGATTATCTTTT--GTGGTTTTGCTCTGCTTCTCATCgattagcttgtgatggccatacatttattcccattcgtatccatgaaattgaaaagaattgaatatacaaatacccttattcaataatgattatcttttgtggttttgctctgcttctcatcttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|10 : atccatttgaaagtcaaacaaaaaacatactgttgtctgtagacacaatcctgtaattgttttgttatacacccgtccttcattctttttagtttctttttctctaatgcacatggtttacagaattgtgaacttaaacaggattagcttgtgatggccatacatttattcccattcgtatccatgaaattgaaaagaattgaatataca----GGTTCAGCAAA---A--CT-GCTGTTATCC-GTGGAC--AGTC-TATAACTG--TTTTGTTATATAC--G-TC-T-CATTTCTTT----T--TAGATTGG----TATATCT-C----TA-G-ATGCATATGA--CGTAG-ATTTTGAAA-TTA---AACA----Gttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|12 : tcgagT----T---TTT-C----TT-G-ATGCACATAGTTTGTAG-ATTTTGAAC-TTA---AACAG---GACAGTGTGACTGCATACA-TTTATC-ATCATATCCgaaggtgtgattgtgcacatttatc
gi|13 : tttttagaaattatATCCGT----TATAT----AGTCAAACGAA---AG-CA-GCTGTT---C-GAGGAT-CAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--GGGTTTG-----T---TTT-C----TA-A-A-GCAAATGGTTTGT-T-ATTTTG-ACTTTT---AACA----Gactagtttaaaagaattaaacttactcaatat
gi|14 : ATAATAT----TATTCA------ATTAT-TGAATG-GGTTCGAGAGCAACAGCTGCTTTGTTTGACCCG------CGG--A------AT
gi|16 : TTG----T--AAG-TTGC----T---CTC-T----TGTG-ATGCGCATGGTTTGTAG-ATTTTCAACTTTA---AGAG----AACAGTaagctgttacccgaagcaaaaggctgaaggcaacagttcagttcaagtgtcaaacat
gi|17 : ------GTTAT-TGACTG-GGTTTGAGGACCA-AGGTGATTTGTTTGACgtgattgcat
gi|2 : TTATATCTG----TA-AC-------GTTATGTAACTG-GATCCTTGGACAGCAGCTGTTTTG--TGACCAGATA--ATGG--A------TTCTT-----GTGCGAGGCCATGGACCAAGGACATCAGATGCAT----T-TATA---GGTCAAACAAAATTA--TA-GATGTTGCCC-GAGGAtttggaataaatctgttacc
gi|3 : agaaaattgatgaactttatgaagaaaatttggaactgaaaaggttgatcaaagacaatgtggacagcaaagccgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattcatttagtatttcgaatgtaacagaatATTA-AACAT----T-T-CA------GATAT-TAACAG-GGTTTGGGAACAACAGATGTTTTGTTTGACCCGATA--ACGG--A------GTC-------GT---AGGCT-----------------GATCCGT----TATAT----AGTCAAACAAA---G--CA-GCTGTT---C-GAGGATACAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--GGGGTTGT----T---TTT-C----TA-A-ATGCAAATGGTTTGTTT-ATTTTGAACTTTT---AACA----GACAGTTACCACTAAGAAA-ATATTC-CTAATATCCTGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAAT
gi|5 : tATCGTTTGTAT-ATTTTGAACTTTACAGGACATTGTGACAGCGTACATTTGTCAACGTATTCACTAGT
gi|5 : -ATAT---CTAATATCCT--AATTAATA-ATGC-----TATTTTTCGTGATTCTGCTCTGCTTTTCATCTAtcataaaaattaaatatacttataactgcataaatcatacatacctatatctaatatcctaattaataatgctatttttcgtgattctgctctgcttttcatctaccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|6 : atcgtttgtatattttgaactttacaggacattgtgacagcgtacatttgtcaacgtattcactagttcataaaaattaaatatacttataactgcataaatcatacatacctA-ATATTC-CTAATATCCTGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAATccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|7 : TGTAACAGAATTTATATATGTGACGTTATGTAACTG-GATCCTTGAACAGCAGCTGTTTTGAGCGACCAGATA--ATGG--A------TTCCT-----GTCCGAGGCC-----------------Gaccagtgaacttcgccattacatagacaaagcagcagactaagaatcacgtgatttgcacagccaatgaaaataggacagactattgttcggtcaacatctgaaaaactgttgaccacgagggtgtgagttggttcaacagttaaaatgttgtttctaaatcgtataagtatattataaaacgtatatacaacat
gi|8 : cagaaaattaatgaactttatgaagaaaatttagaactgaagaggttggtcaaagacaacgtggacagcaaagctgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattaatttagaatttcgaaATTATAACAG----TATACA------GTTAT-TGAATG-AGTTCGAGGGTAACAGA-----TGTTTGACTCGAAG--ACAG--ATATTTTGTCCGCAGCAGT---AGGCTGAAGACAATA-------GATTCGT----TCGAG----GGTCAAACAAA---A--CA-GCTGTTGTCC-AAGGAAACATTT-TATAGCTG--TTT-TCT-CATAC--A-TCTT-CA-GTCTTTTAGAT--GAGCTTTTTCCCT---TTT-CTACTTT-ACATGCACATGGTTTGTAG-ATTTGGAACTTtaggccaaggacatcag
gi|9 : tgaATACA------GTTAT---ACTGCGGTTCGAGAGCAACAGCTTTTTTGTTTTACCC-ATAGGACGGGAA------CTT-------TT---A-CCC-----------------GAACCGTACGCTCTACATCGGGTCAAACCAA---A--CA-GCTGTTGTTC-GTGGACACAGTC-TGTAACGGGTTTT-GTTATATAC--A-CCTTGCA-TTTTTT----TAAAAGCCTGT----T---TTCAC----TT-T-ATGCACATTGTa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATTTTTCGTATTATCTTGACTTCCTTTCGTTTCAATAAAGTCTCTATTTATCATCACTAAAAATTCATTGAACCTCGCCATTGTTCATGATTACTAAACATAGCAGTCGGACTAAATATCCCGTGACCGTCGTAGCCAATAGAATGGACAGCTATTGCACGGTCAATAGTTCGTAAAATGTTGACCGCTGCAATAGATGACGTGTGAAACGTTGTTTTAACAGTTAAAATGTGTGGTTATTAACTCTATTATTTTTATATTAAAAATATAATTGTTATACACAACAC
Unaligned ( gi|11 ): TCTCATGCTTCTGCTGCCAGTTTCATATAACAAATTCTGTATTTCATTATCAGTCAAATTAGTGAACCTAACCATTATGTAAACAAAGAAGCAGACTGGGAATCACATATCTTGCTTAGCCAATAGAAAT
Unaligned ( gi|15 ): TGATATCATGTAGTTATTGAATGGGTGCGAGGGCAACAATTAATTTGTCAGCCTCGAGACATGGGCTGTTCTCCAAGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1111 111111 1 1111 11111111111111111111111111111111111111111111111 111111 111111 22 1111 111111111 11111 111111111111 111 2222 11 3333 1 1 11
lowQualScore : 0 7777 3 444444 0 5 1 2 0 99 99 77 5555 33333333333333333333333333333333333333333333333 0 0 88 444444 666666 5 4 1 1 5 99 00 4 9 1111 6 5 555555555 1 22222 888 888888888888 0 5 9 000 3333 66 1111 3 0 5 1 55 22 77 1 2
lowQualScore : . .... . ...... . . . . . .. .. .. .... ............................................... . . .. ...... ...... . . . . . .. .. . . .... . . ......... . ..... ... ............ . . . ... .... .. .... . . . . .. .. .. . .
lowQualScore : 8 0000 9 444444 0 0 4 4 4 22 22 77 0000 00000000000000000000000000000000000000000000000 2 2 00 999999 888888 0 5 0 4 7 22 77 2 8 2222 7 7 000000000 0 66666 888 888888888888 4 0 4 000 6666 00 5555 2 0 0 0 22 88 55 0 5
consensus : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--A-NT--CTTGTC---CG-------AGGC-------------C---GA----------CAGATCCGTTCNA-N----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CATT-CTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GACAGTGTGCATTNGNCAAAATATTC-CTAATATCCTGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
Reference ( family-1025 ) : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--A-NT--CCTGT----CG-------AGGC-------------C---GA----------CAGATCCGTTNTA-N----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CATT-CTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GACAGTGTNCATTCGT-AAAATATTC-CTAATATCCTGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
gi|1 : ATCCATTTGA-A----AGTCAAACAAA---AAACATACTGTTGTCTGTAGACACAATCCTGTAATTG--TTTTGTTATACACCCGTCCTT-CATT-CTTT----T--T-AGTTTCT----T---TTT-C-----TCT-AATGCACATGGTTTACAGAATTGTGAAC-TTA---AACA----G
gi|1 : AATACCCT-TATTCAATA---ATGATTATCTTTT--GTGGTTTTGCTCTGCTTCTCATCgattagcttgtgatggccatacatttattcccattcgtatccatgaaattgaaaagaattgaatatacaaatacccttattcaataatgattatcttttgtggttttgctctgcttctcatcttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|10 : atccatttgaaagtcaaacaaaaaacatactgttgtctgtagacacaatcctgtaattgttttgttatacacccgtccttcattctttttagtttctttttctctaatgcacatggtttacagaattgtgaacttaaacaggattagcttgtgatggccatacatttattcccattcgtatccatgaaattgaaaagaattgaatatacaA-G----GGTTCAGCAAA---A--CT-GCTGTTATCCGTGGACA--GTC-TATAACTG--TTTTGTTATATAC--G-TCT--CATTTCTTT----T--T-AGATTGG----TATATCT-C-----T-A-GATGCATATGAC--GTAG-ATTTTGAAA-TTA---AACAG---GAAGGTGTG-ATTttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|12 : tcgT-TTTT----A--G-AAATTAT----T---TTTTC-----T-T-GATGCACATAGTTTGTAG-ATTTTGAAC-TTA---AACAG---GACAGTGTgtgcacatttatc
gi|13 : ATCCGTTATA-T----AGTCAAACGAA---AG-CA-GCTGTT---CGAGGAT-CAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CATT-CTTT----T--G-GGTTTG-----T---TTT-C-----T-A-AA-GCAAATGGTTTGT-T-ATTTTG-ACTTTT---AACA----Ggactgcatacatttatcatcatatccactagtttaaaagaattaaacttactcaatat
gi|14 : ATAATAT----TATTCA------ATTAT-TGAATG-GGTTCGAGAGCAACAGCTGCTTTGTTTGACCCG------CGG--A-ATAAGCTGTTACCCG-------AAGCAAAAGGCTGAAGGC---AA----------CAGTTCAGTTCAA-G----TGTCAAACA
gi|15 : ATGTA------GTTAT-TGAATG-GGTGCGAGGGCAACAATTAATTTGTCAGCCTCGAt
gi|16 : tgatatcT----T--GTAAGTTGC----T---CTC-T-----T-GTGATGCGCATGGTTTGTAG-ATTTTCAACTTTA---AGAG----AACAGTGTG-ATTgacatgggctgttctccaagt
gi|17 : ------GTTAT-TGACTG-GGTTTGAGGACCA-AGGTGATTTGTTTGACgcat
gi|17 : A----------CAGATTTATTCCA-A----AGTCAAACAAA---T--CA-CCT-TGGTCCTCAAACCCAGTC-AATAACtttggaataaatctgttacc
gi|2 : TTATATCTG----TA-AC-------GTTATGTAACTG-GATCCTTGGACAGCAGCTGTTTTG--TGACCAGATA--ATGG--A-TT--CTTGTG---CG-------AGGC-------------CATGGACCAAGGACATCAGATGCATT-TATA----GGTCAAACAAAATTA--TA-GATGTTGCCCGAGGAtacc
gi|3 : agaaaattgatgaactttatgaagaaaatttggaactgaaaaggttgatcaaagacaatgtggacagcaaagccgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattcatttagtatttcgaatgtaacagaatATTA-AACAT----T-T-CA------GATAT-TAACAG-GGTTTGGGAACAACAGATGTTTTGTTTGACCCGATA--ACGG--A-GT--C--GT-------------AGGC-------------T---GA--------------TCCGTTATA-T----AGTCAAACAAA---G--CA-GCTGTT---CGAGGATACAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CATT-CTTT----T--G-GGGTTGT----T---TTT-C-----T-A-AATGCAAATGGTTTGTTT-ATTTTGAACTTTT---AACA----GACAGTTACCACTAAG-AAAATATTC-CTAATATCCTGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAAT
gi|5 : tATCGTTTGTAT-ATTTTGAACTTTACAGGACATTGTGACAGCGTACATTTGTCAACGTATTCACTAGT
gi|5 : ATAT---CTAATATCCT--AATTAATA-ATGC-----TATTTTTCGTGATTCTGCTCTGCTTTTCATCTAtcataaaaattaaatatacttataactgcataaatcatacatacctatatctaatatcctaattaataatgctatttttcgtgattctgctctgcttttcatctaccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|6 : atcgtttgtatattttgaactttacaggacattgtgacagcgtacatttgtcaacgtattcactagttcataaaaattaaatatacttataactgcataaatcatacatacctAATATTC-CTAATATCCTGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAATccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|7 : TGTAACAGAATTTATATATGTGACGTTATGTAACTG-GATCCTTGAACAGCAGCTGTTTTGAGCGACCAGATA--ATGG--A-TT--CCTGTC---CG-------AGGC-------------C---Gaccagtgaacttcgccattacatagacaaagcagcagactaagaatcacgtgatttgcacagccaatgaaaataggacagactattgttcggtcaacatctgaaaaactgttgaccacgagggtgtgagttggttcaacagttaaaatgttgtttctaaatcgtataagtatattataaaacgtatatacaacat
gi|8 : cagaaaattaatgaactttatgaagaaaatttagaactgaagaggttggtcaaagacaacgtggacagcaaagctgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattaatttagaatttcgaaATTATAACAG----TATACA------GTTAT-TGAATG-AGTTCGAGGGTAACAGA-----TGTTTGACTCGAAG--ACAG--ATAT--TTTGTC---CGCAGCAGTAGGCTGAAGA-------C---AA----------TAGATTCGTTCGA-G----GGTCAAACAAA---A--CA-GCTGTTGTCCAAGGAAACATTT-TATAGCTG--TTT-TCT-CATAC--A-TCTT-CAGT-CTTTTAGAT--G-AGCTTTTTCCCT---TTT-CTACTTT-A-CATGCACATGGTTTGTAG-ATTTGGAACTTtaggccaaggacatcag
gi|9 : tgaATACA------GTTAT---ACTGCGGTTCGAGAGCAACAGCTTTTTTGTTTTACCC-ATAGGACGGGAA-CT--TTTAC----CC-------GAAC-------------C---G---------------TACGCTCTA-CATCGGGTCAAACCAA---A--CA-GCTGTTGTTCGTGGACACAGTC-TGTAACGGGTTTT-GTTATATAC--A-CCTTGCATT-TTTT----TAAA-AGCCTGT----T---TTCAC-----T-T-TATGCACATTGTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATTTTTCGTATTATCTTGACTTCCTTTCGTTTCAATAAAGTCTCTATTTATCATCACTAAAAATTCATTGAACCTCGCCATTGTTCATGATTACTAAACATAGCAGTCGGACTAAATATCCCGTGACCGTCGTAGCCAATAGAATGGACAGCTATTGCACGGTCAATAGTTCGTAAAATGTTGACCGCTGCAATAGATGACGTGTGAAACGTTGTTTTAACAGTTAAAATGTGTGGTTATTAACTCTATTATTTTTATATTAAAAATATAATTGTTATACACAACAC
Unaligned ( gi|11 ): TCTCATGCTTCTGCTGCCAGTTTCATATAACAAATTCTGTATTTCATTATCAGTCAAATTAGTGAACCTAACCATTATGTAAACAAAGAAGCAGACTGGGAATCACATATCTTGCTTAGCCAATAGAAAT
Alignments
lowQualScore : 1111 111111 1 11 1111111 1111111 888888888888888888888888888888 11111 111111 22 1111 111111111 11111 111111111111 111 2222 333333333 111111 1 111 11 11
lowQualScore : 0 7777 3 444444 0 5 1 77 1 33 77 66 6666666 0 8888888 999999999999999999999999999999 0 0 1 00000 666666 5 4 1 1 5 99 00 4 9 1111 6 6 555555555 1 22222 888 888888888888 0 5 9 000 3333 99 333333333 333 333333 1 3 000 8 11 1 55 22 77 1 2
lowQualScore : . .... . ...... . . . .. . .. .. .. ....... . ....... .............................. . . . ..... ...... . . . . . .. .. . . .... . . ......... . ..... ... ............ . . . ... .... .. ......... ... ...... . . ... . .. . .. .. .. . .
lowQualScore : 8 0000 9 444444 0 0 4 11 6 66 99 77 1111111 7 6666666 000000000000000000000000000000 2 2 0 44444 888888 0 5 0 4 7 22 77 2 8 2222 7 7 000000000 0 66666 888 888888888888 4 0 4 000 6666 22 555555555 444 666666 7 3 000 0 00 0 22 88 55 0 5
consensus : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-T---C--TTGTCCG-------AGGC-------------C---GA----------CAGATCCGTTCNAN----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGCGTG--------CATTNGNCA-ACA--TATTC-CTA---GTATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
Reference ( family-1025 ) : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-T---C--TTGTCCG-------AGGC-------------C---GA----------CAGATCCGTTCNAN----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGTGTG--------CATTNGNCA-AAA--TATTC-CTA---ATATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
gi|1 : ATCCATTTGAA----AGTCAAACAAA---AAACATACTGTTGTCTGTAGACACAATCCTGTAATTG--TTTTGTTATACACCCGTCCTT-CA-TTCTTT----T--T-AGTTTCT----T---TTT-C-----TCT-AATGCACATGGTTTACAGAATTGTGAAC-TTA---AACA----GGATTAGCTTG--------TGATGGCCATACATTTATTC-CCATTCGTATCCATGAAATT
gi|1 : A---ATACCC-T-TATTCAATA---ATGATTATCTTTT--GTGGTTTTGCTCTGCTTCTCATCgaaaagaattgaatatacaaatacccttattcaataatgattatcttttgtggttttgctctgcttctcatcttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|10 : atccatttgaaagtcaaacaaaaaacatactgttgtctgtagacacaatcctgtaattgttttgttatacacccgtccttcattctttttagtttctttttctctaatgcacatggtttacagaattgtgaacttaaacaggattagcttgtgatggccatacatttattcccattcgtatccatgaaattgaaaagaattgaatatacaTCGAG----GGTTCAGCAAA---A--CT-GCTGTTATCCGTGGACA--GTC-TATAACTG--TTTTGTTATATAC--G-TC-T-CATTTCTTT----T--T-AGATTGG----TATATCT-C-----T-A-GATGCATATGA--CGTAG-ATTTTGAAA-TTA---AACAG---GA--AGGTGTG---------ATTGTGCA-ttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|12 : TTTTT----A--G-AAATTAT----T---TTTTC-----T-T-GATGCACATAGTTTGTAG-ATTTTGAAC-TTA---AACAG---GA--CAGTGTGACTGCATACATTTATCA-TCA--TATCCACTA---GTcatttatc
gi|13 : ATCCGTTATAT----AGTCAAACGAA---AG-CA-GCTGTT---CGAGGAT-CAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--G-GGTTTG-----T---TTT-C-----T-A-AA-GCAAATGGTTTGT-T-ATTTTG-ACTTTT---AACA----Gttaaaagaattaaacttactcaatat
gi|14 : ATAATAT----TATTCA------ATTAT-TGAATG-GGTTCGAGAGCAACAGCTGCTTTGTTTGACCCG------CGG--AA-TAAGCTGTTACCCG-------AAGCAAAAGGCTGAAGGC---AA----------CAGTTCAGTTCAAG----TGTCAAACA
gi|15 : ATGTA------GTTAT-TGAATG-GGTGCGAGGGCAACAATTAATTTGTCAGCCTCGAGAC-ATGG--GC-T---G--TTCTCCA-------AGt
gi|16 : tgatatcT----T--GTAAGTTGC----T---CTC-T-----T-GTGATGCGCATGGTTTGTAG-ATTTTCAACTTTA---AGAG----AA--CAGTGTG---------ATTt
gi|17 : ------GTTAT-TGACTG-GGTTTGAGGACCA-AGGTGATTTGTTTGACgcat
gi|17 : A----------CAGATTTATTCCAA----AGTCAAACAAA---T--CA-CCT-TGGTCCTCAAACCCAGTC-AATAACtttggaataaatctgttacc
gi|2 : TTATATCTG----TA-AC-------GTTATGTAACTG-GATCCTTGGACAGCAGCTGTTTTGT--GACCAGATA--ATGG--AT-T---C--TTGTGCG-------AGGC-------------CATGGACCAAGGACATCAGATGCATTTATA----GGTCAAACAAAATTA--TA-GATGTTGCCCGAGGAtacc
gi|3 : agaaaattgatgaactttatgaagaaaatttggaactgaaaaggttgatcaaagacaatgtggacagcaaagccgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattcatttagtatttcgaatgtaacagaatATTA-AACAT----T-T-CA------GATAT-TAACAG-GGTTTGGGAACAACAGATGTTTTGTTTGACCCGATA--ACGG--AG-T---C----GT----------AGGC-------------T---GA--------------TCCGTTATAT----AGTCAAACAAA---G--CA-GCTGTT---CGAGGATACAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--G-GGGTTGT----T---TTT-C-----T-A-AATGCAAATGGTTTGTTT-ATTTTGAACTTTT---AACA----GA--CAGTTAC--------CACTAAG-A-AAA--TATTC-CTA---ATATCC-TGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAAT
gi|5 : tATCGTTTGTAT-ATTTTGAACTTTACAGGACATTGTGA--CAGCGTA--------CATTTGTCA-ACG--TATTCACTA---GT
gi|5 : A--TAT---CTA---ATATCC-T--AATTAATA-ATGC-----TATTTTTCGTGATTCTGCTCTGCTTTTCATCTAtcataaaaattaaatatacttataactgcataaatcatacatacctatatctaatatcctaattaataatgctatttttcgtgattctgctctgcttttcatctaccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|6 : atcgtttgtatattttgaactttacaggacattgtgacagcgtacatttgtcaacgtattcactagttcataaaaattaaatatacttataactgcataaatcatacatacctAA--TATTC-CTA---ATATCC-TGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAATccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|7 : TGTAACAGAATTTATATATGTGACGTTATGTAACTG-GATCCTTGAACAGCAGCTGTTTTGAGCGACCAGATA--ATGG--AT-T---C--CTGTCCG-------AGGC-------------C---Gaccagtgaacttcgccattacatagacaaagcagcagactaagaatcacgtgatttgcacagccaatgaaaataggacagactattgttcggtcaacatctgaaaaactgttgaccacgagggtgtgagttggttcaacagttaaaatgttgtttctaaatcgtataagtatattataaaacgtatatacaacat
gi|8 : cagaaaattaatgaactttatgaagaaaatttagaactgaagaggttggtcaaagacaacgtggacagcaaagctgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattaatttagaatttcgaaATTATAACAG----TATACA------GTTAT-TGAATG-AGTTCGAGGGTAACAGATGTTT-----GACTCGAAG--ACAG--ATAT---T--TTGTCCGCAGCAGTAGGC-------------T---GAAGACAA----TAGATTCGTTCGAG----GGTCAAACAAA---A--CA-GCTGTTGTCCAAGGAAACATTT-TATAGCTG--TTT-TCT-CATAC--A-TCTT-CA-GTCTTTTAGAT--G-AGCTTTTTCCCT---TTT-CTACTTT-A-CATGCACATGGTTTGTAG-ATTTGGAACTTtaggccaaggacatcag
gi|9 : tgaATACA------GTTAT---ACTGCGGTTCGAGAGCAACAGCTTTTTTGTTTTACCC-ATAGGACGGGAAC-T---T--TTACCCG-------AA-C-------------C---G---------------TACGCTCTACATCGGGTCAAACCAA---A--CA-GCTGTTGTTCGTGGACACAGTC-TGTAACGGGTTTT-GTTATATAC--A-CCTTGCA-TTTTTT----TAAA-AGCCTGT----T---TTCAC-----T-T-TATGCACATTGTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATTTTTCGTATTATCTTGACTTCCTTTCGTTTCAATAAAGTCTCTATTTATCATCACTAAAAATTCATTGAACCTCGCCATTGTTCATGATTACTAAACATAGCAGTCGGACTAAATATCCCGTGACCGTCGTAGCCAATAGAATGGACAGCTATTGCACGGTCAATAGTTCGTAAAATGTTGACCGCTGCAATAGATGACGTGTGAAACGTTGTTTTAACAGTTAAAATGTGTGGTTATTAACTCTATTATTTTTATATTAAAAATATAATTGTTATACACAACAC
Unaligned ( gi|11 ): TCTCATGCTTCTGCTGCCAGTTTCATATAACAAATTCTGTATTTCATTATCAGTCAAATTAGTGAACCTAACCATTATGTAAACAAAGAAGCAGACTGGGAATCACATATCTTGCTTAGCCAATAGAAAT
Alignments
lowQualScore : 1111 111111 1 11 1111111 1111111 888888888888888888888888888888 11111 111111 22 1111 111111111 11111 111111111111 111 1111 3333333333 1 111 11 11
lowQualScore : 0 7777 3 444444 0 5 1 77 1 33 77 66 6666666 0 8888888 999999999999999999999999999999 0 0 1 00000 666666 5 4 1 1 5 99 00 4 9 1111 6 6 555555555 1 22222 888 888888888888 0 5 9 000 7777 99 6 4444444444 333 77 77 3 000 8 11 1 55 22 77 1 2
lowQualScore : . .... . ...... . . . .. . .. .. .. ....... . ....... .............................. . . . ..... ...... . . . . . .. .. . . .... . . ......... . ..... ... ............ . . . ... .... .. . .......... ... .. .. . ... . .. . .. .. .. . .
lowQualScore : 8 0000 9 444444 0 0 4 11 6 66 99 77 1111111 7 6666666 000000000000000000000000000000 2 2 0 44444 888888 0 5 0 4 7 22 77 2 8 2222 7 7 000000000 0 66666 888 888888888888 4 0 4 000 9999 22 3 5555555555 444 55 99 3 000 0 00 0 22 88 55 0 5
consensus : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-T---C--TTGTCCG-------AGGC-------------C---GA----------CAGATCCGTTCNAN----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGCGTG--------C-ATTNGNCA-ACA--TATTC-CTA---GTATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
Reference ( family-1025 ) : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-T---C--TTGTCCG-------AGGC-------------C---GA----------CAGATCCGTTCNAN----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGCGTG--------C-ATTNGNCA-ACA--TATTC-CTA---GTATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
gi|1 : ATCCATTTGAA----AGTCAAACAAA---AAACATACTGTTGTCTGTAGACACAATCCTGTAATTG--TTTTGTTATACACCCGTCCTT-CA-TTCTTT----T--T-AGTTTCT----T---TTT-C-----TCT-AATGCACATGGTTTACAGAATTGTGAAC-TTA---AACA----GGATTAGCTTG--------T-GATGGCCATACATTTATTC-CCATTCGTATCCATGAAATT
gi|1 : A---ATACCC-T-TATTCAATA---ATGATTATCTTTT--GTGGTTTTGCTCTGCTTCTCATCgaaaagaattgaatatacaaatacccttattcaataatgattatcttttgtggttttgctctgcttctcatcttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|10 : atccatttgaaagtcaaacaaaaaacatactgttgtctgtagacacaatcctgtaattgttttgttatacacccgtccttcattctttttagtttctttttctctaatgcacatggtttacagaattgtgaacttaaacaggattagcttgtgatggccatacatttattcccattcgtatccatgaaattgaaaagaattgaatatacaTCGAG----GGTTCAGCAAA---A--CT-GCTGTTATCCGTGGACA--GTC-TATAACTG--TTTTGTTATATAC--G-TC-T-CATTTCTTT----T--T-AGATTGG----TATATCT-C-----T-A-GATGCATATGA--CGTAG-ATTTTGAAA-TTA---AACA----GG--AAG-GTG--------TGATTGTGC--ACA--Tttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|12 : TTTTT----A--G-AAATTAT----T---TTTTC-----T-T-GATGCACATAGTTTGTAG-ATTTTGAAC-TTA---AACAG---GA--CAGTGTGACTGCATAC-ATTTATCA-TCA--TATCCACTA---GTttatc
gi|13 : ATCCGTTATAT----AGTCAAACGAA---AG-CA-GCTGTT---CGAGGAT-CAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--G-GGTTTG-----T---TTT-C-----T-A-AA-GCAAATGGTTTGT-T-ATTTTG-ACTTTT---AACA----Gttaaaagaattaaacttactcaatat
gi|14 : ATAATAT----TATTCA------ATTAT-TGAATG-GGTTCGAGAGCAACAGCTGCTTTGTTTGACCCG------CGG--AA-TAAGCTGTTACCCG-------AAGCAAAAGGCTGAAGGC---AA----------CAGTTCAGTTCAAG----TGTCAAACA
gi|15 : ATGTA------GTTAT-TGAATG-GGTGCGAGGGCAACAATTAATTTGTCAGCCTCGAGAC-ATGG--GC-T---G--TTCTCCA-------AGt
gi|16 : tgatatcT----T--GTAAGTTGC----T---CTC-T-----T-GTGATGCGCATGGTTTGTAG-ATTTTCAACTTTA---AGAG----AA--CAGTGTG----------ATTt
gi|17 : ------GTTAT-TGACTG-GGTTTGAGGACCA-AGGTGATTTGTTTGACgcat
gi|17 : A----------CAGATTTATTCCAA----AGTCAAACAAA---T--CA-CCT-TGGTCCTCAAACCCAGTC-AATAACtttggaataaatctgttacc
gi|2 : TTATATCTG----TA-AC-------GTTATGTAACTG-GATCCTTGGACAGCAGCTGTTTTGT--GACCAGATA--ATGG--AT-T---C--TTGTGCG-------AGGC-------------CATGGACCAAGGACATCAGATGCATTTATA----GGTCAAACAAAATTA--TA-GATGTTGCCCGAGGAtacc
gi|3 : agaaaattgatgaactttatgaagaaaatttggaactgaaaaggttgatcaaagacaatgtggacagcaaagccgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattcatttagtatttcgaatgtaacagaatATTA-AACAT----T-T-CA------GATAT-TAACAG-GGTTTGGGAACAACAGATGTTTTGTTTGACCCGATA--ACGG--AG-T---C----GT----------AGGC-------------T---GA--------------TCCGTTATAT----AGTCAAACAAA---G--CA-GCTGTT---CGAGGATACAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--G-GGGTTGT----T---TTT-C-----T-A-AATGCAAATGGTTTGTTT-ATTTTGAACTTTT---AACA----GA--CAGTTAC--------C-ACTAAGAA-A-A--TATTC-CTA---ATATCC-TGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAAT
gi|5 : tATCGTTTGTAT-ATTTTGAACTTTACAGGACATTGTGA--CAGCGTA--------C-ATTTGTCA-ACG--TATTCACTA---GT
gi|5 : -ACC--TATAT-CTA---ATATCC-T--AATTAATA-ATGC-----TATTTTTCGTGATTCTGCTCTGCTTTTCATCTAtcataaaaattaaatatacttataactgcataaatcatacatacctatatctaatatcctaattaataatgctatttttcgtgattctgctctgcttttcatctaccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|6 : atcgtttgtatattttgaactttacaggacattgtgacagcgtacatttgtcaacgtattcactagttcataaaaattaaatatacttataactgcataaatcatacatA--TATTC-CTA---ATATCC-TGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAATccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|7 : aTGTAACAGAATTTATATATGTGACGTTATGTAACTG-GATCCTTGAACAGCAGCTGTTTTGAGCGACCAGATA--ATGG--AT-T---C--CTGTCCG-------AGGC-------------C---Gaccagtgaacttcgccattacatagacaaagcagcagactaagaatcacgtgatttgcacagccaatgaaaataggacagactattgttcggtcaacatctgaaaaactgttgaccacgagggtgtgagttggttcaacagttaaaatgttgtttctaaatcgtataagtatattataaaacgtatatacaacat
gi|8 : cagaaaattaatgaactttatgaagaaaatttagaactgaagaggttggtcaaagacaacgtggacagcaaagctgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattaatttagaatttcgaaATTATAACAG----TATACA------GTTAT-TGAATG-AGTTCGAGGGTAACAGATGTTT-----GACTCGAAG--ACAG--ATAT---T--TTGTCCGCAGCAGTAGGC-------------T---GAAGACAA----TAGATTCGTTCGAG----GGTCAAACAAA---A--CA-GCTGTTGTCCAAGGAAACATTT-TATAGCTG--TTT-TCT-CATAC--A-TCTT-CA-GTCTTTTAGAT--G-AGCTTTTTCCCT---TTT-CTACTTT-A-CATGCACATGGTTTGTAG-ATTTGGAACTTtaggccaaggacatcag
gi|9 : tgaATACA------GTTAT---ACTGCGGTTCGAGAGCAACAGCTTTTTTGTTTTACCC-ATAGGACGGGAAC-T---T--TTACCCG-------AA-C-------------C---G---------------TACGCTCTACATCGGGTCAAACCAA---A--CA-GCTGTTGTTCGTGGACACAGTC-TGTAACGGGTTTT-GTTATATAC--A-CCTTGCA-TTTTTT----TAAA-AGCCTGT----T---TTCAC-----T-T-TATGCACATTGTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATTTTTCGTATTATCTTGACTTCCTTTCGTTTCAATAAAGTCTCTATTTATCATCACTAAAAATTCATTGAACCTCGCCATTGTTCATGATTACTAAACATAGCAGTCGGACTAAATATCCCGTGACCGTCGTAGCCAATAGAATGGACAGCTATTGCACGGTCAATAGTTCGTAAAATGTTGACCGCTGCAATAGATGACGTGTGAAACGTTGTTTTAACAGTTAAAATGTGTGGTTATTAACTCTATTATTTTTATATTAAAAATATAATTGTTATACACAACAC
Unaligned ( gi|11 ): TCTCATGCTTCTGCTGCCAGTTTCATATAACAAATTCTGTATTTCATTATCAGTCAAATTAGTGAACCTAACCATTATGTAAACAAAGAAGCAGACTGGGAATCACATATCTTGCTTAGCCAATAGAAAT
Alignments
lowQualScore : 1111 111111 1 11 1111111 1111111 888888888888888888888888888888 11111 111111 22 1111 111111111 11111 111111111111 111 1111 3333333333 1 111 11 11
lowQualScore : 0 7777 3 444444 0 5 1 77 1 33 77 66 6666666 0 8888888 999999999999999999999999999999 0 0 1 00000 666666 5 4 1 1 5 99 00 4 9 1111 6 6 555555555 1 22222 888 888888888888 0 5 9 000 7777 99 6 4444444444 333 77 77 3 000 8 11 1 55 22 77 1 2
lowQualScore : . .... . ...... . . . .. . .. .. .. ....... . ....... .............................. . . . ..... ...... . . . . . .. .. . . .... . . ......... . ..... ... ............ . . . ... .... .. . .......... ... .. .. . ... . .. . .. .. .. . .
lowQualScore : 8 0000 9 444444 0 0 4 11 6 66 99 77 1111111 7 6666666 000000000000000000000000000000 2 2 0 44444 888888 0 5 0 4 7 22 77 2 8 2222 7 7 000000000 0 66666 888 888888888888 4 0 4 000 9999 22 3 5555555555 444 55 99 3 000 0 00 0 22 88 55 0 5
consensus : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-T---C--TTGTCCG-------AGGC-------------C---GA----------CAGATCCGTTCNAN----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGCGTG--------C-ATTNGNCA-ACA--TATTC-CTA---GTATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
Reference ( family-1025 ) : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-T---C--TTGTCCG-------AGGC-------------C---GA----------CAGATCCGTTCNAN----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGCGTG--------C-ATTNGNCA-ACA--TATTC-CTA---GTATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
gi|1 : ATCCATTTGAA----AGTCAAACAAA---AAACATACTGTTGTCTGTAGACACAATCCTGTAATTG--TTTTGTTATACACCCGTCCTT-CA-TTCTTT----T--T-AGTTTCT----T---TTT-C-----TCT-AATGCACATGGTTTACAGAATTGTGAAC-TTA---AACA----GGATTAGCTTG--------T-GATGGCCATACATTTATTC-CCATTCGTATCCATGAAATT
gi|1 : A---ATACCC-T-TATTCAATA---ATGATTATCTTTT--GTGGTTTTGCTCTGCTTCTCATCgaaaagaattgaatatacaaatacccttattcaataatgattatcttttgtggttttgctctgcttctcatcttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|10 : atccatttgaaagtcaaacaaaaaacatactgttgtctgtagacacaatcctgtaattgttttgttatacacccgtccttcattctttttagtttctttttctctaatgcacatggtttacagaattgtgaacttaaacaggattagcttgtgatggccatacatttattcccattcgtatccatgaaattgaaaagaattgaatatacaTCGAG----GGTTCAGCAAA---A--CT-GCTGTTATCCGTGGACA--GTC-TATAACTG--TTTTGTTATATAC--G-TC-T-CATTTCTTT----T--T-AGATTGG----TATATCT-C-----T-A-GATGCATATGA--CGTAG-ATTTTGAAA-TTA---AACA----GG--AAG-GTG--------TGATTGTGC--ACA--Tttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|12 : TTTTT----A--G-AAATTAT----T---TTTTC-----T-T-GATGCACATAGTTTGTAG-ATTTTGAAC-TTA---AACAG---GA--CAGTGTGACTGCATAC-ATTTATCA-TCA--TATCCACTA---GTttatc
gi|13 : ATCCGTTATAT----AGTCAAACGAA---AG-CA-GCTGTT---CGAGGAT-CAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--G-GGTTTG-----T---TTT-C-----T-A-AA-GCAAATGGTTTGT-T-ATTTTG-ACTTTT---AACA----Gttaaaagaattaaacttactcaatat
gi|14 : ATAATAT----TATTCA------ATTAT-TGAATG-GGTTCGAGAGCAACAGCTGCTTTGTTTGACCCG------CGG--AA-TAAGCTGTTACCCG-------AAGCAAAAGGCTGAAGGC---AA----------CAGTTCAGTTCAAG----TGTCAAACA
gi|15 : ATGTA------GTTAT-TGAATG-GGTGCGAGGGCAACAATTAATTTGTCAGCCTCGAGAC-ATGG--GC-T---G--TTCTCCA-------AGt
gi|16 : tgatatcT----T--GTAAGTTGC----T---CTC-T-----T-GTGATGCGCATGGTTTGTAG-ATTTTCAACTTTA---AGAG----AA--CAGTGTG----------ATTt
gi|17 : ------GTTAT-TGACTG-GGTTTGAGGACCA-AGGTGATTTGTTTGACgcat
gi|17 : A----------CAGATTTATTCCAA----AGTCAAACAAA---T--CA-CCT-TGGTCCTCAAACCCAGTC-AATAACtttggaataaatctgttacc
gi|2 : TTATATCTG----TA-AC-------GTTATGTAACTG-GATCCTTGGACAGCAGCTGTTTTGT--GACCAGATA--ATGG--AT-T---C--TTGTGCG-------AGGC-------------CATGGACCAAGGACATCAGATGCATTTATA----GGTCAAACAAAATTA--TA-GATGTTGCCCGAGGAtacc
gi|3 : agaaaattgatgaactttatgaagaaaatttggaactgaaaaggttgatcaaagacaatgtggacagcaaagccgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattcatttagtatttcgaatgtaacagaatATTA-AACAT----T-T-CA------GATAT-TAACAG-GGTTTGGGAACAACAGATGTTTTGTTTGACCCGATA--ACGG--AG-T---C----GT----------AGGC-------------T---GA--------------TCCGTTATAT----AGTCAAACAAA---G--CA-GCTGTT---CGAGGATACAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--G-GGGTTGT----T---TTT-C-----T-A-AATGCAAATGGTTTGTTT-ATTTTGAACTTTT---AACA----GA--CAGTTAC--------C-ACTAAGAA-A-A--TATTC-CTA---ATATCC-TGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAAT
gi|5 : tATCGTTTGTAT-ATTTTGAACTTTACAGGACATTGTGA--CAGCGTA--------C-ATTTGTCA-ACG--TATTCACTA---GT
gi|5 : -ACC--TATAT-CTA---ATATCC-T--AATTAATA-ATGC-----TATTTTTCGTGATTCTGCTCTGCTTTTCATCTAtcataaaaattaaatatacttataactgcataaatcatacatacctatatctaatatcctaattaataatgctatttttcgtgattctgctctgcttttcatctaccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|6 : atcgtttgtatattttgaactttacaggacattgtgacagcgtacatttgtcaacgtattcactagttcataaaaattaaatatacttataactgcataaatcatacatA--TATTC-CTA---ATATCC-TGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAATccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|7 : aTGTAACAGAATTTATATATGTGACGTTATGTAACTG-GATCCTTGAACAGCAGCTGTTTTGAGCGACCAGATA--ATGG--AT-T---C--CTGTCCG-------AGGC-------------C---Gaccagtgaacttcgccattacatagacaaagcagcagactaagaatcacgtgatttgcacagccaatgaaaataggacagactattgttcggtcaacatctgaaaaactgttgaccacgagggtgtgagttggttcaacagttaaaatgttgtttctaaatcgtataagtatattataaaacgtatatacaacat
gi|8 : cagaaaattaatgaactttatgaagaaaatttagaactgaagaggttggtcaaagacaacgtggacagcaaagctgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattaatttagaatttcgaaATTATAACAG----TATACA------GTTAT-TGAATG-AGTTCGAGGGTAACAGATGTTT-----GACTCGAAG--ACAG--ATAT---T--TTGTCCGCAGCAGTAGGC-------------T---GAAGACAA----TAGATTCGTTCGAG----GGTCAAACAAA---A--CA-GCTGTTGTCCAAGGAAACATTT-TATAGCTG--TTT-TCT-CATAC--A-TCTT-CA-GTCTTTTAGAT--G-AGCTTTTTCCCT---TTT-CTACTTT-A-CATGCACATGGTTTGTAG-ATTTGGAACTTtaggccaaggacatcag
gi|9 : tgaATACA------GTTAT---ACTGCGGTTCGAGAGCAACAGCTTTTTTGTTTTACCC-ATAGGACGGGAAC-T---T--TTACCCG-------AA-C-------------C---G---------------TACGCTCTACATCGGGTCAAACCAA---A--CA-GCTGTTGTTCGTGGACACAGTC-TGTAACGGGTTTT-GTTATATAC--A-CCTTGCA-TTTTTT----TAAA-AGCCTGT----T---TTCAC-----T-T-TATGCACATTGTa
blockSeqs : AATT G TGTGAC G C T CA G GG GA TA GT CAGCAGT CATGGACCAAGGACATC G CATCG ATTA . A T A . GT TT A T G G T TAGATG A TTCCC ATA CTACTTTAC . T CAG TTGT . T ACTGCATAC GTG A . A . . GT C CG GG TT T G
blockSeqs : . A . G . G TT T C . C CT . TGAAGACAAT T G AG . G A C . . T G T G . . TAAA A G . TCTTG . T . G . T TG TAT A . A . . GT A CG GG TC A T
blockSeqs : . A . . . C TT T . . T CC . TGA A T A . G C A . . T G T G . . TGT T T . TTGTG . T . . . T C AAG A . . . . T C A . TT T G
blockSeqs : . A . . . A GC T . . G TT . CG C G T . G A A . . . A . A . . TT G C . ACTTT . T . . . C C TGT . . . . . .
blockSeqs : A . . . C TT A . . T TT . A A G . G A A . . . . . A . . AG G T . CTAG . T . . . . . . . .
blockSeqs : . . . . A . T . . C C . T A A . . A . . TG C T . CTAA . . . . . .
blockSeqs : . . . C . G T A . . T TG C . . CTAA . .
blockSeqs : T G
blockSeqCons : CT***** CGG*************************** A***** T* G*** ** A* ** ***
originalCons : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-T---C--TTGTCCG-------AGGC-------------C---GA----------CAGATCCGTTCNAN----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGCGTG--------C-ATTNGNCA-ACA--TATTC-CTA---GTATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
finalCons : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-TCT-----TGTCCG-------AGGCCGG---------------------------AGATCCGTTCNAN----GGTCAAACAAAA-----CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATACG---CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGCGTG--------C-ATTNGNCA-ACA--TATTC-CTA---GTATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATTTTTCGTATTATCTTGACTTCCTTTCGTTTCAATAAAGTCTCTATTTATCATCACTAAAAATTCATTGAACCTCGCCATTGTTCATGATTACTAAACATAGCAGTCGGACTAAATATCCCGTGACCGTCGTAGCCAATAGAATGGACAGCTATTGCACGGTCAATAGTTCGTAAAATGTTGACCGCTGCAATAGATGACGTGTGAAACGTTGTTTTAACAGTTAAAATGTGTGGTTATTAACTCTATTATTTTTATATTAAAAATATAATTGTTATACACAACAC
Unaligned ( gi|11 ): TCTCATGCTTCTGCTGCCAGTTTCATATAACAAATTCTGTATTTCATTATCAGTCAAATTAGTGAACCTAACCATTATGTAAACAAAGAAGCAGACTGGGAATCACATATCTTGCTTAGCCAATAGAAAT
Alignments
lowQualScore : 1111 111111 1 11 1111111 77777777777777777777777777777777777777 11111 111111 22 1111 111111111 11111 111111111111 111 1111 3333333333 1 111 11 11
lowQualScore : 0 7777 3 444444 0 5 1 77 1 33 77 66 6666666 0 00000000000000000000000000000000000000 0 1 00000 666666 5 4 1 1 5 99 00 4 9 1111 6 6 555555555 1 22222 888 888888888888 0 5 9 000 7777 99 6 4444444444 333 77 77 3 000 8 11 1 55 22 77 1 2
lowQualScore : . .... . ...... . . . .. . .. .. .. ....... . ...................................... . . ..... ...... . . . . . .. .. . . .... . . ......... . ..... ... ............ . . . ... .... .. . .......... ... .. .. . ... . .. . .. .. .. . .
lowQualScore : 8 0000 9 444444 0 0 4 11 6 66 99 77 1111111 7 77777777777777777777777777777777777777 2 0 44444 888888 0 5 0 4 7 22 77 2 8 2222 7 7 000000000 0 66666 888 888888888888 4 0 4 000 9999 22 3 5555555555 444 55 99 3 000 0 00 0 22 88 55 0 5
consensus : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-T---C--TTGTCCG-------AGGCC--GN------------AGA-------TCCGTTCNAN----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGCGTG--------C-ATTNGNCA-ACA--TATTC-CTA---GTATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
Reference ( family-1025 ) : NATTATAACAG----TATACA------GTTAT-TGACTG-GGTTCGAGGGCAACAGCTGTTTTGTTTGACCCGATA--ACGG--AN-T---C--TTGTCCG-------AGGCC--GG------------AGA-------TCCGTTCNAN----GGTCAAACAAA---A--CA-GCTGTTGTCCGNGGACACAGTC-TATAACTG--TTT-GTTATATAC--G-CCTT-CA-TTCTTT----T--G-AGNTTGT----T---TTT-C-----T-N-GATGCACATGGTTTGTAG-ATTTTGAACTTTA---AACA----GA--CAGCGTG--------C-ATTNGNCA-ACA--TATTC-CTA---GTATCC-TGTAATTANTACGTGTGGTTATATTTTTCGTGNTTTTGCTCTGCGTTTCATCCAAT
gi|1 : A-------TCCATTTGAA----AGTCAAACAAA---AAACATACTGTTGTCTGTAGACACAATCCTGTAATTG--TTTTGTTATACACCCGTCCTT-CA-TTCTTT----T--T-AGTTTCT----T---TTT-C-----TCT-AATGCACATGGTTTACAGAATTGTGAAC-TTA---AACA----GGATTAGCTTG--------T-GATGGCCATACATTTATTC-CCATTCGTATCCATGAAATT
gi|1 : A---ATACCC-T-TATTCAATA---ATGATTATCTTTT--GTGGTTTTGCTCTGCTTCTCATCgaaaagaattgaatatacaaatacccttattcaataatgattatcttttgtggttttgctctgcttctcatcttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|10 : atccatttgaaagtcaaacaaaaaacatactgttgtctgtagacacaatcctgtaattgttttgttatacacccgtccttcattctttttagtttctttttctctaatgcacatggtttacagaattgtgaacttaaacaggattagcttgtgatggccatacatttattcccattcgtatccatgaaattgaaaagaattgaatatacaTCGAG----GGTTCAGCAAA---A--CT-GCTGTTATCCGTGGACA--GTC-TATAACTG--TTTTGTTATATAC--G-TC-T-CATTTCTTT----T--T-AGATTGG----TATATCT-C-----T-A-GATGCATATGA--CGTAG-ATTTTGAAA-TTA---AACA----GG--AAG-GTG--------TGATTGTGC--ACA--Tttaataaatcattgtggacctgtgtagccaatttaagaaataggtggacagatcaattggctggcata
gi|12 : TTTTT----A--G-AAATTAT----T---TTTTC-----T-T-GATGCACATAGTTTGTAG-ATTTTGAAC-TTA---AACAG---GA--CAGTGTGACTGCATAC-ATTTATCA-TCA--TATCCACTA---GTttatc
gi|13 : A-------TCCGTTATAT----AGTCAAACGAA---AG-CA-GCTGTT---CGAGGAT-CAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--G-GGTTTG-----T---TTT-C-----T-A-AA-GCAAATGGTTTGT-T-ATTTTG-ACTTTT---AACA----Gttaaaagaattaaacttactcaatat
gi|14 : ATAATAT----TATTCA------ATTAT-TGAATG-GGTTCGAGAGCAACAGCTGCTTTGTTTGACCCG------CGG--AA-TAAGCTGTTACCCGAAGCAAAAGGCT--GA------------AGGCAACAGTTCAGTTCAAG----TGTCAAACA
gi|15 : ATGTA------GTTAT-TGAATG-GGTGCGAGGGCAACAATTAATTTGTCAGCCTCGAGAC-ATGG--GC-T---G--TTCTCCA-------AGt
gi|16 : tgatatcT----T--GTAAGTTGC----T---CTC-T-----T-GTGATGCGCATGGTTTGTAG-ATTTTCAACTTTA---AGAG----AA--CAGTGTG----------ATTt
gi|17 : ------GTTAT-TGACTG-GGTTTGAGGACCA-AGGTGATTTGTTTGACgcat
gi|17 : ------------AGA-------TTTATTCCAA----AGTCAAACAAA---T--CA-CCT-TGGTCCTCAAACCCAGTC-AATAACtttggaataaatctgttacc
gi|2 : TTATATCTG----TA-AC-------GTTATGTAACTG-GATCCTTGGACAGCAGCTGTTTTGT--GACCAGATA--ATGG--AT-T---C--TTGTGCG-------AGGCCATGGACCAAGGACATCAGA-------TGCATTTATA----GGTCAAACAAAATTA--TA-GATGTTGCCCGAGGAgttacc
gi|3 : agaaaattgatgaactttatgaagaaaatttggaactgaaaaggttgatcaaagacaatgtggacagcaaagccgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattcatttagtatttcgaatgtaacagaatATTA-AACAT----T-T-CA------GATAT-TAACAG-GGTTTGGGAACAACAGATGTTTTGTTTGACCCGATA--ACGG--AG-T---C----GT----------AGGCT--G---------------A-------TCCGTTATAT----AGTCAAACAAA---G--CA-GCTGTT---CGAGGATACAGTC-TATAACTG--TT--GTTGTA--C--G-CCTT-CA-TTCTTT----T--G-GGGTTGT----T---TTT-C-----T-A-AATGCAAATGGTTTGTTT-ATTTTGAACTTTT---AACA----GA--CAGTTAC--------C-ACTAAGAA-A-A--TATTC-CTA---ATATCC-TGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAAT
gi|5 : tATCGTTTGTAT-ATTTTGAACTTTACAGGACATTGTGA--CAGCGTA--------C-ATTTGTCA-ACG--TATTCACTA---GT
gi|5 : -ACC--TATAT-CTA---ATATCC-T--AATTAATA-ATGC-----TATTTTTCGTGATTCTGCTCTGCTTTTCATCTAtcataaaaattaaatatacttataactgcataaatcatacatacctatatctaatatcctaattaataatgctatttttcgtgattctgctctgcttttcatctaccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|6 : atcgtttgtatattttgaactttacaggacattgtgacagcgtacatttgtcaacgtattcactagttcataaaaattaaatatacttataactgcataaatcatacatA--TATTC-CTA---ATATCC-TGTAATTACTACGTGTGGTTATATTTTTTGTGTTTTTGCTCTGTGTTTCATCCAATccaaagtctgcatttcaagtgaaccttgtcatttcgtaaacaatgcagtagaccaagaatcacgtgacttgcatagccaataaaaataggactgactagtgcccagccaaca
gi|7 : aTGTAACAGAATTTATATATGTGACGTTATGTAACTG-GATCCTTGAACAGCAGCTGTTTTGAGCGACCAGATA--ATGG--AT-T---C--CTGTCCG-------AGGCC--GT------------AGaccagtgaacttcgccattacatagacaaagcagcagactaagaatcacgtgatttgcacagccaatgaaaataggacagactattgttcggtcaacatctgaaaaactgttgaccacgagggtgtgagttggttcaacagttaaaatgttgtttctaaatcgtataagtatattataaaacgtatatacaacat
gi|8 : cagaaaattaatgaactttatgaagaaaatttagaactgaagaggttggtcaaagacaacgtggacagcaaagctgatactggtcattctaatgaatcagtaattattcctgcaagggctaaatcgggtatgtcaattattaatttagaatttcgaaATTATAACAG----TATACA------GTTAT-TGAATG-AGTTCGAGGGTAACAGATGTTT-----GACTCGAAG--ACAG--ATAT---T--TTGTCCGCAGCAGTAGGCT--GA------------AGACAATAGATTCGTTCGAG----GGTCAAACAAA---A--CA-GCTGTTGTCCAAGGAAACATTT-TATAGCTG--TTT-TCT-CATAC--A-TCTT-CA-GTCTTTTAGAT--G-AGCTTTTTCCCT---TTT-CTACTTT-A-CATGCACATGGTTTGTAG-ATTTGGAACTTgccaaggacatcag
gi|9 : tgaATACA------GTTAT---ACTGCGGTTCGAGAGCAACAGCTTTTTTGTTTTACCC-ATAGGACGGGAAC-T---T--TTACCCG-------AA-CC--GT------------A-----------CGCTCTACATCGGGTCAAACCAA---A--CA-GCTGTTGTTCGTGGACACAGTC-TGTAACGGGTTTT-GTTATATAC--A-CCTTGCA-TTTTTT----TAAA-AGCCTGT----T---TTCAC-----T-T-TATGCACATTGTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATTTTTCGTATTATCTTGACTTCCTTTCGTTTCAATAAAGTCTCTATTTATCATCACTAAAAATTCATTGAACCTCGCCATTGTTCATGATTACTAAACATAGCAGTCGGACTAAATATCCCGTGACCGTCGTAGCCAATAGAATGGACAGCTATTGCACGGTCAATAGTTCGTAAAATGTTGACCGCTGCAATAGATGACGTGTGAAACGTTGTTTTAACAGTTAAAATGTGTGGTTATTAACTCTATTATTTTTATATTAAAAATATAATTGTTATACACAACAC
Unaligned ( gi|11 ): TCTCATGCTTCTGCTGCCAGTTTCATATAACAAATTCTGTATTTCATTATCAGTCAAATTAGTGAACCTAACCATTATGTAAACAAAGAAGCAGACTGGGAATCACATATCTTGCTTAGCCAATAGAAAT