lowQualScore : 111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 2 111111 1 1111 111111111 1 11 1 1 44444444444444444444 44444444444444444444444444444444 33333333 55555555555555555555555555555 111 11 1 222222 3 2222222222222222222222 1111 2 22222222 333333333333333333333333333333333333333333 111111 44444444444444444 1 66666 22 3 555555555555 2 22 11 22 33 4444444 1 11 2222222 111 333 2222 2222 111 33 333333333 44 1111 111 33333 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 2 22 1 33 1 5555 11 11 333 222 66666666 22222 2 1 66666 111111 11 222 44444444 111111 222 555555555555555 111 2222 222222 555555 111 2 111 11 2 333333333333333333333333333333333333333333333333333333333333 1 44444 22222 555555555555555555555555555555555555555 4 66666 77777777777 11 22222 11 11 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2
lowQualScore : 4 4 8 8 111111 7 4 55 3 44 6666 3 333333333 3 555 888 3 6 3 11 3 6 3 0 1 66666666666666666666 6 6 3 3 44 3 55555555555555555555555555555555 44 555 44 3 44 77777777 9999999 3 3 77777 3 66666666666666666666666666666 3 999 11 55 3 1 3 55 3 3 3 777777 55 5 7777777777777777777777 3 9999 3 888 7 3 3 3 8 99999999 3 55 444444444444444444444444444444444444444444 3 3 3 3 3 3 3 111111 44444444444444444 4 4 2 4 55 888 44 4 22222 4 8888 4 88 1 4 8 4 5 5 5 888888888888 666 3 7 66 5 5 66 55 5 5 11 33 66 77 0 7777777 66 1 888 5 77 5 5555555 5 66 000 6 222 7777 5 5 66 7777 5 5 66 5 5 5 8 5 4 88 555 8 4 8 77 4 8 8 111111111 4 11 0 77 4 4 2222 4 55 111 00000 4 4 000 888 5 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 11 8 5 0 11 88 6 11 5 0 8 2222 33 11 0 8 888 8 222 55555555 5 5 44444 6 3 00000 5 77 888888 77 00 222 5 33333333 5 5 666666 9 5 111 5 555555555555555 999 4 5 6666 111111 111111 111 0 111 44 0 777777777777777777777777777777777777777777777777777777777777 6 6 3 11111 7 55555 555555555555555555555555555555555555555 0 9 77777 2 8 8 8 55555555555 8 11 88888 99 0 8 8 11 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3
lowQualScore : . . . . ...... . . .. . .. .... . ......... . ... ... . . . .. . . . . . .................... . . . . .. . ................................ .. ... .. . .. ........ ....... . . ..... . ............................. . ... .. .. . . . .. . . . ...... .. . ...................... . .... . ... . . . . . ........ . .. .......................................... . . . . . . . ...... ................. . . . . .. ... .. . ..... . .... . .. . . . . . . . ............ ... . . .. . . .. .. . . .. .. .. .. . ....... .. . ... . .. . ....... . .. ... . ... .... . . .. .... . . .. . . . . . . .. ... . . . .. . . . ......... . .. . .. . . .... . .. ... ..... . . ... ... . . ........................................................................................................................................................................................ . .. . . . .. .. . .. . . . .... .. .. . . ... . ... ........ . . ..... . . ..... . .. ...... .. .. ... . ........ . . ...... . . ... . ............... ... . . .... ...... ...... ... . ... .. . ............................................................ . . . ..... . ..... ....................................... . . ..... . . . . ........... . .. ..... .. . . . .. ........................................................................................................................................................................................................................................................... .
lowQualScore : 0 0 0 0 555555 0 0 55 6 66 1111 3 333333333 3 444 555 3 7 3 22 3 7 3 8 4 22222222222222222222 7 7 3 3 66 3 00000000000000000000000000000000 66 888 66 3 66 88888888 2222222 3 3 66666 6 55555555555555555555555555555 6 333 99 00 6 9 6 00 6 6 6 111111 00 5 3333333333333333333333 6 2222 6 333 3 6 3 3 8 00000000 3 00 555555555555555555555555555555555555555555 6 3 3 3 3 6 6 555555 22222222222222222 0 0 0 0 55 000 88 0 00000 0 5555 0 11 9 4 9 4 0 0 0 444444444444 222 2 5 99 0 0 99 11 0 0 99 55 99 00 1 4444444 99 2 888 0 55 0 0000000 0 99 000 7 555 7777 7 7 44 3333 7 0 99 0 0 0 2 0 4 33 888 9 4 0 11 4 9 9 222222222 0 88 3 00 0 0 5555 0 55 000 00000 0 0 333 888 0 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 00 0 0 8 88 00 0 00 4 8 0 0000 22 00 8 0 000 0 555 11111111 7 7 11111 0 3 11111 7 99 333333 99 77 666 7 77777777 7 7 444444 6 7 999 7 111111111111111 333 3 0 0000 555555 000000 777 0 777 00 0 666666666666666666666666666666666666666666666666666666666666 7 7 3 00000 3 00000 333333333333333333333333333333333333333 0 8 55555 5 8 0 0 00000000000 0 00 22222 00 8 0 0 00 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7
consensus : GGGTCACGTGA-C-CCCGTCTATT-G------GTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AAT-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC--ATA--TT-----------T-GAA-TCA-TTTT-GAGA--A-AT--------A-----------T---GATC--G-GA--AAAC---T--A-C--T--NN----TATT-G-----A-T-TATTTAT-A---A-AAA---TNA--C---T----ACATGT-AT---G-AGACATTTTATGTGAAA--TGTGA-ACAAGA-T--TAT-A-AG-ATCGAA-A--T-C--ATACTT-TATTTAACA-T--C--GG-T-C-NNTTAT-TTTA--CGGAG-TAGCCC--G-AGAAGAT-GCGACT-GCATCCG-A-AGTTT-NT-C---AT-GTTAT--T-----G---T--------GATAA-ATG--C---------GC-AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAAT------ATT-TT-----AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAACA--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G-AAAG-TGCAA-GAAAACT-G-G-CAAAAA--------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-C-AGTAAACAG-TA--GAT-AT--TATT--TATTCCA-A----TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACA-ATAT-TAAGAC--A-GTGT-AA-GAG-GG-TC-C-AT-GGG--TC-CA-TCG-TTTAC-TTGAA-CAG-CTG--A-TCAAC-CGTT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-TA--TTTCAAGGG-AAT-GTCAAGTT-TC----T-GA--TT---TTGT----TGT-TT-TAAT--ATG---TCT-TTATT-AACAAAATGGACCAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTT--TAG---TTTAA----T-----TAATG--T-TT-ATTTTTACT-AA-AGTTGGTA-----AATTCCAA-TGGA--C-AAA-ACATAAATTTAACAGTTTTTTATTGAAAATTAAAAAAC-GGAGAGAT-CTTGAA--GATC-TGA--TAC-AATTATTCAAAAAATACCT--GTGGAGAAGC-A-CA--TTTGAAATT-ACAAAAATCTT--G--G-G--AAACAA-A----TTT--AAAA-TTCAAAAA-A-TCTTTG---G--AGAA-A-C------AAATTAT-ATTGGAGTT-CTTG---G-ACGA-NTTG-GCCTTGGANGATAGTCAAGCAC-T-TAG---A-NAATG--TATGCTAA---GATTTC---AATT-AAATAAGAGATTGAAGACAATATTACC-GAG-AT----TGCCA----CA-GAAGAA-T--AAATG-CACA---TTTGTGAAT-CTAAAT-A-TTGCTTCATA-TTG-GAAAATT-CAA-CAGCGTTA-------------TTTTACTTA-C-ATATT--------TGCAATAT-GTGCACATTGAGA----ATCATGTTTATTTT-GAAAG-ACA-GT-A-ATGAAT-GGTTT--TGA-C---AAAAAT-ATG-ATAA-T--GCATT-TT---GTTTTTGAA-AG--CAAAT--TAGAATAA--TTAAA-AT-G-TG-ACACATAT-GT----ATA--CTGGT-GTCTCATAC------TAT---CA-CCAGTACC-G-GTA--CTCAA-ATTTC-AATT-G--TTTN-T--TCAAACG-GA--CCACTA-TA-T-TA-TA-TTAAAC---TCC--------------------AATCAGG-AATNAAAACTCTGTAA---ATA--AAA-------CCAC-ACAATAAT
Reference ( gi|1 ) : GGGTCACGTGA-C-CC-GTCTATT-G------GTTAA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AAT-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-TATA--CT-----------T-GAA-TCA-TTTT-GAGA--A-AT--------A-----------T---GA-C--G-AA--AAAC---T--A-C--T--AT----TATT-G-----A-T-TATTTAT-A---A-AAA---TCA--C---T----A-ATGT-A----G-AGACCTTTTATGTGAAA--TGTGA-AGAAGA-T--TAT-A-AG-ATCGAA-A--T-C--ATACTTATATTTAACA-T--C--GG-T-C-ATTTAT-TTTC--CGGAG-TAGCCT--G-AGAAGAT-ACGACT-GCATCCG-AGAGTTT-TT-C---AT-GTTAT--T----CG---TC-------GATAA-ATG--C---------G--AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAAT------A-A-TT-----AGA-TTAA-CAAAGTTTTC-TTTG-TT--GATC--TA-ATCG-TAAACAGTTTAAATTAA-TCT----TG-TTATGAAACA-GATCAACTG-AAAG-TGCAA-GAAAACT-G-G-CAAAAC--------GGAGAGAGCA-C-ACTAAAATGCGTA--A-ATACAA-TA--TAATC-AGTAAACAG-TA--GAT-TT--TATTTATATTCCA-A---GTA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACA-ATA--CAAGAC--ACGTGT-AA-GAG-GG-T--C-AT-GGG--TC-CA-TCG-TTCAC-TTGAA-CAA-CTT--A-TCAAC-CGCTTACG-A-TTG-TTT---CATC--GAATTTTAGAAT-TAGTTTTCAAGGA-AAT-GTCAAGTT-TC----T-GA--TT---TTG-----TGT-TT-TAAT--ATA---TCT-TTATT-ACCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATATAGACTGTT--TAG---TTTAA----T-----TAATT--T-TTCATTGTTAT--AA-AGTTGGCA-----AATTCCAA-TGGA--C-AAACACATAAATTTATCAG-TTTG-ATTGAAAATCAAAAAAC-GAAAAGAT-TTTGAA--GATC-TG---TAC-AATTATTCAAAAAATACCTGTGTGGAGAAGC-A-CA--TT-GAAATTTACAAAATTCTT--ATTG-G--AAACAA-A----TTT--AAAA-TTCAAACA-A-TCTT-----G--AGAA-A-C------AATTTAT-ATTGAAGTT-CTTG---G-ACGA-ATTG-GCCTTGGAGGATAGTCAAGCAA-T-TAG---A-AAATGT-TAT-CTAA---GA-TTC---AATT-AAA-AAGAGATTGGA------ATTACC-GAGCAT----TGCCA----CA-GAAGAA-C--AAATT-CACAAC-TTTGTGAAT-CTAAAT-A-TTGCTTCATA-TGCCGAAAATTCCAA-CAGCGTT--------------TTTTA-TTA-C-GTATTA-------TGCAATATAGTGCACATTGAGAATCTATCATGTTTATTTT-GAAAG-AC--GTTA-ATGTAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GCA---TT---G--T--GAACAGT-CAAGTGGTAGAATAA--TTAAA-AT-G-TG-ACACATCTCGTAGCGATAT-CTGGTGGTTTTATACAA----TAT---CA-CCAGTACCTGCGTACCCTCAAGAT----AACT-G--TTTGATAATCTAAAG-GA--CAACTAGTA-T-TA-TA-TTAAAC---T-C--------------------AAT-AGG-AAGAACAACAC----A---ATGATAAA-------CCACAACAATAATT
gi|6 : GGGTCACGTGA-C-CCCGTCTATT-G------GTTTA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCCACGCT-AAT-A-AAA--G-AGATG-CAGAA-TTTGCTTGGTCATAT---TT-----------T-GAA-TCA-TTTT-GAGA--ATAT--------A-----------T------C--GAAA--AAAC---T--A-C--T--TA----TATT-G-----AGT-TATTTATAA---A-AAA---TCA--C---C----T-ATGT-T----G-AGACCATTTATGTGAAT--TGTGAGACAAGA-T--TAT-ATAG-ATCGAA-A--T-C--ATACTT-TATTTAA-A-TC-C--GG-T-C-TATTAT-TTTA--CGGAG-TAGCCT--G-AGAAGAT-ACGACT-GCATCCG-AGAGTTTAGT-C---ATAGTTGTAAT----CG----C-------GATAA-A-G--C---------G----------GC-TCG-AAACG-A-TGTAAAT-GC------GGGAAT------ATT-TT-----AGA-TTAA-CAAAGTTTTCATTTG--T--GATCTATA-ATCG-TAAACA--TTAAATTAA-TCT----TGTTTATA----A-GAACAACAG-AAAG-TGCAA-GAAAACT-G-G-CAAAA----------GCGAGAGCA-C-ACTAAAA--CGTA--A-ATACAA-TA--TAATC-AGTAAACAG-TA--GA---T--TATTTTTATTCC--A---GTACTGCTTGTTG-G---AT--AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACATATT--CAAGAC--A-GTGT-TA-GAG-GGCT--C-AT-GGG--T--CA-TCG-TTCAC-TAGAA-CAA-CTT--A-TCAAC-CGGTT-C--A-TTG-TTT---CATC--G-ATTTTAGAAT-TAGTTTTCAAGGA-AAT-GTCAAGTT-TC----T-GA--TTG--TTG-----TG--TT-TAAT--A
gi|2 : cgGGGTCACGTGA-C-CCCGTCTATTTG------GTTTA-CTTGG-CTCTCAGTTAAA--GTTGGCGCGCG---------GGG-TAGCGC---CTTAAGAAATGAATCTACGCT-AAT-A-AAAA-G-AG-TG-CAGAATTCTG-TTGGTC--ATAGTTT-----------T-GAAATCA-TTTT-GAGA--A-AT--------A-----------T---GA-T--A-GA--AAAC---T--A-CCTT--AT----TATTTG-----A-T-TATT-AT-A---A-AAA---TGAACT---T----ACATGTCAT---G-AAATATGTTATGTGGAAATTGTGA-ACAAGA-T--TAT-A-AG-ATTGAACA--TTC--ATACTT-TATTTA-CA-T--CC-GGCT-C-TATTAT-TTTA--CGGAG-TAGCCC--GCAGAAGAT-ACGACT-GCATC-G-A-AGTTT-TT-C---AT-GTTAT--T-----G---T------------A-ATG--C---------GC-AT-TTAAAGC-TCG-AAACG-A-TGTAAATTGC------GGGGA-------A-A-TTTT---AGAATTAA-CAAAGTTGTC-TTTG-TTTGAATC--TA-ATCGCTAAATA--TTAAATTAAATCT----TG-TTATGAAACACGATCAAC-G-AAAGCTGCAATGAAAACTTG-G-CAAA-C--------GG-GAGAGCAGC-ACTAAAATG-GTA--A--TACAA-TAGATAAAC-AGTAAACAG-TATAGAT-AT--TATT-AT-TTCCA------TA--GCT-GTTATGTTGGTA-AGTTGC-GTG-TTTTTGTCATGTTGA----AAAAAA-AAA--CACG---ACAACA-ATA--TTAGAC--A-GTGTTAACGAGCGG-CTCC-ATAGGG--TC-CA-TCG-TTTAC-TTGAA-CAAGCTG--A-TCAAAACGTTCGCA-A-T-G-TTC---TCCC--GAATTTTAGAAC-TA--TTTCAAGGG-AAT-GTCAAGTT-TC----TTGA--TT---TTGCTTGTTGT-TT-TGA---ATA---TAT-CT-TT-A------TGGACCAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAC--AT-TA-ACTGTT---AG---T--AA----T-----TTATG--C-TT-ATT-TTATTTAACAGTTGGTA-----A-TTCCAA-TGGA--C-AAAAACATAAATTTA-CAGTTTTT-ATTGAAAATTCAAAAAC-G--GAGAT-ATTGAAAGAATCTTGACTTAC-AACT-TTCAAAAAAT-CTT---TGGAGAAGC-ACCAT-TT-GAAATCTACAAAAATCTTGGA-GG-G--AAACAC-ATTGGTTT--AAAATTTCAAAAACA-TCTTTGGAGA--AGAA-A-CAAAATTAATTTAT--TTGGAGCTGATTGA--G-ACA----TG-GCCTTGGA-GATAGTCAAGCACTT-TAG---ACAAATG--TATGCTAA---GATTTC---AATT-AAATAAGAGATTTGAC-----ATTACCAGATGAT----T--TA-----A-GAAGAATT--AAATTGCACA---TTTGTGAAT-C--AATAA-TTGC
gi|9 : acgGGGTCACG-GA-C-CC-GTCTATT-G------GTTTA-CT--G-TTC--AGTTAAAA-GT-GGCGC-CG---------GG--TAGCGC---CT---GAAATGAATCTACGCTGAAT-A-AAA--G-AG-TG-CAGAATTT-GCTTGGTC--ATA--TT-----------T-TAA--AA-TTTT-GAGA--A-AT--------A-----------T---GATC--A-GA--AAAC---T--A-C--T--TA----TATT-GTATATA-T-TATTTA------A-AAA---CTG--C--------A-TTGT-TT---G-AGACATTT-ATGTGAAA--TGTGA-ACAAGA-T--TAT-A-AG-ATCGAA-A--TTC--ATACTT-TATTTA-CA-T--C--GG-T-C-TATTAT-TT-A--CGGAG-TAGCCC--GGAGAAG-T-ACGACT-GCATGCC-AAAGTTT-TT-C---AT-GTTAT--T-----G---TT-------------ATG--C---------GC-AT-TAAA-GC-TCG-AAACGAA-TGTAAAT-GC------GGGAAT------ATT-TT-----AGA-TTAA-CAAAGGTTTCTTTTGTTT--GAT-------TC--------------ATTAA-TCT----T--TAATGAAAC--GATCAAC-G-AAAT-TGCAA-GGAAACT-G-G-CAAAAA--------G--GAGAGCA-C-ACTAAAGTGC-TAATA-ATA-AT-TA--TA--CAAGTAATCAG-TT--GAT-AT--TATT--TATTCCA------TA--GC-TGTTGTG---ATA-AATTGCTGTGTTTTGTTT-ATGT-------GAAAAA-AAA--
gi|5 : acgGGGTC-CGTGA-C-CCCGTCTCTTCG------GTTTA-CT--GCTTC--AGTTAAAAAGTTGGCGC-CGTCCGAGGCTGGT-TAGCGCAACCT---GAAATGAATCTACGCT-AATAA-AAA--G-AGTTG-CAGAATTTTG-TTGGTC-AATT--TA-----------T-GAA-TCA-TTTTAGAGAACA-AT--------A-----------T---GA-T--C-AG--AAAC---T--A-C--T--GTATA-TATTCG-----C-TCTATTTAT-AAACA-AAA---TGA--C---T-------TGT-AAACTG-AGACA-TTTATGTGAAA--TGGAA-AGTACAGT--TATAA-AG-ATCGAA-T--TAC--ATACTT-TATTT-ACA-TCCC--GG-T-C----TATAATTA--CGGAGCTAGCCTCCG-AGAAGAT-ACGAC--GCATCCG-A-AGTTT-TT-C---GA-G-TAC--T-----G---CT-------G-T-A-ATG--C---------GC-ATATTAA-GCTTCGAAAACG-A-TGTAAAT-GCATAAGGGGGAAT------ATT-TT-----AGA-TTAACCAAAGTTTTCTTTTG-TT--GATC--TA-ATCG-TAAATAA-TTACATTAA-TCTTACGTA-TGATGAAAC--GATCAACGGCAAAGTTGCAA-GAAAACT-GCGCCAAAACAGGCGCGGGGGAAGAGCA-CAACT-AAATG-GTA--A-ATCCAACTA--TAA-C-AGT-AACAG-AAT-GATAAT--TATT--TATTCCA------TA--GCTTG-TGTA---TTA-AGTTGCTGT-GTTTGTGT-ATGTTGGAAGAGAAAAACAAA--CCCGCGCACAACC-ATATTTAAGACAGAC-TGT-AA-GAG-GG-T--CAAT-AGGCTTCGCAGTCG-TTTACTTTGAACCAG-CCTCGATTCAAC-CGTTTTCGTATTTG-TTTTCCCACC--GAATTTTAACATCTA--TTTCAAGGGCAAT-GTCACGTTGTCT---T-GAGCTTTTGTTG-----TGT-TT-TAATCAATA---TCT-TTATT-aacaccc
gi|14 : cgGGGTCACGTGA-C-CCCGTCTATT-G------GTTTA-CT--G-TTC--AGTCAAAA-AGTGGCAC-CA---------GGG-TAGCGC---CT---CAAATGAATCTACGCT-AAT-ATAAA--A-CG-TG-CAGAA-TTTGCTTGGTCATAT---TT-----------T-GAA-TCA-TTTT-GAGA--T-AT--------A-----------T---GATC--A-GA--AAAC---TCAA-T--TCAATTCTATACT-G-----A-T-TATTTAT-A---A-AAA---TGA--CT--T----ACATGT-AT---G-AGACATTTC-TGTGAAA--TAATA-ACAAAA-T--TAT-A-AG-ATCGAA-ATTT-C--ATACTT-TATTT-ACATT--C--GG-TCC-ATT--T-TTTA--CGGAG-TAGCCC--G-AGAAGAT-GCGACT-GCATCCG-A-AGTTT-GT-CAAGAT-GTTAT--T-----G---T--------AATTA-ATG--CGCATTTAATG--AT-TTAA-GC-TCG-GAACG-A-TGTAAAT-GC------GGGAAT------ATT-TT-----AGA-TTAA-CAAAGATTTC-CTTG-TT--GACC--TA-ATCG-TAAAC-----AAATTAA-TCT----GG-TTAtac
gi|10 : cggGGGTCACGTGA-C-CCCGTCTATT-G------GTTTATCT--G-TTC--AGTTAAAG---TGGCGC------------GGG-TAGCGC----T---GATATGA-TCTACGCT-AAT-A-AAAAAG-AG-TGGCAGAATTT-GCT-GGTC--ATA--TT-----------T-GAAGTCA-GTTT-GAGA--A-A---------A-----------T---GA-TCAG-AG--AAAC---T--A-C--TT-AT----ACTC-G-----A-T-GATTTAT-A---ATAAAGACTTG--CATGT----A-TCGT-A----G-ATA---TTTATGTGAAA--TGTGA-CAAGAA-T--TA--A-AG-CTCGAATA--T-TCTATACTTAT--TTA-CA-T--CCGGG-C-T-ATT-AT-TTAC--GGTAG-TCATCC--G-AGAAGATTACGACTTGC---TG-A-AGTTT-TT-C---AG-GTTAT--T------------------GGTAT-GTC--C---------GC-AT-TTAA-GC-TCG-AAACG-AGTGT-AAT-GC-------GGAAT------ATT-TT-----AGA-TTAA-CAAAGTTTTC-TTTG-TT--GA--------------------TTGAATTAA-TCT----TG-TTA-GAAACA-GATCAAC---GAAG-TCCAA-GAAAACT-G-G-CAAAAA--------G--GAGAGCA---ACT-AAATG-GT---A-ATATAT-TA--TA--C-AGTAAACAG-TT--GATATTAATATTTA---TCCA------TA--GGCTGTTGT----ATATAGTTGCTGGTGTTTTTGT-ATGT-------GAAAAA-AAA--CCCC---AC
gi|12 : cgGGGCCACGTGA-CGCC-GTCTATT-G------GTTTA-CT--G-TTC--AGTCAAAA-GT-GGCGC-CA---------GGG-TAGCGC---CT---TAAATGAATCTACGCT-AAT-A-AAAA-G-AG-TG-CAGAACTT-GCTTAGCC--ATA--TT-----------TTGAA-TCA-TTTT-GAGG--A-AT--------GATAAGATATTTT---AA-A--A-AA--AAACAAAC--A-C--C--ATA---TATT-G-----A-T-TATTTAT-A---A-AAA---TTA--C---TT---ACATGT-A----TTAGATATTTC-TGACAAA--TATAA-ACAAGA-C--TAT-A-AG-ATCGAA-A--TTC--ATACTT-TATTTACTT-C--C--GG-T---ATATGT-TTTA--CGGAG-AAGCCC--G-AGAAGAT-GCGACT-GCATCCG-A-AGTTT-GT-CAAGAT-GTTAG--TGTAACGCGCTCAAAGAAAGGTAA-AC----------------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATCTTAA-A-CTAACAAAGA-TTAA-CAAAGATTGT-CTTA-TT--GATC--TA-TTCG-TAAAC-----AAATTAA-TCT----TG-TTATGAAAC--GATGAAC-G-AAAG-TGCGT-GAAAAC
gi|19 : cgGGGTCACGTGA-C-CCAGTCTATT-G------GTTTA-CT--G-TTC--AGTCAAAA-AGTGGCGG-AG---------GGG-TAGCGC---CC---GAAATGAATCTACACT-AATAA-AAA--G-AG-TG-CAGAA-TTTGCTTGGTCATAT---TT-----------T-GAA-TCG-TTTT-GAGA--A-AT--------A-----------T---GATC--A-GA--AAAC---T--A-C--T--TA----TATT-G-----A-T-TATTTAT-A---A-AAA---TGA--CT--T----ACATGT-AT---G-AGACATTTC-TGTGAAA--C-------AAGA-TAATAT-A-AG-ATCGAA-AT-T-C--ATACTT-TATTT-ACA-T--CT-GG-T----TCTAT-TTTTTACTGAG-TAGCCC--G-AGAAGAT-GCGACT-GTATCCG-A-AGTTT-------------------------------------GACAAGATG------------------TTAA-GC-TAG-AAACG-gga
gi|30 : acgGGTCACGTGA-C-CCCGTCTATT-ACTAGTAGTTTA-CT--G-TTC--AGTCAAAG---TGGTGC-AG---------GGG-TAGCAC---CT---CAAATGAAT
gi|24 : gtcaCATGATC-CC-GTCTATT-G------GTTTA-CT--G-TTC--AGTCAAAA-GT-GGCGC-CG---------GGT-AAGCGC---AT---GAAATGAATTTACGCT-AATTC-AAA--C-AG-TG-CAGAATTT-GCTTGGTC--ATA--TTTTGAATGTTTAT-GAA-TCA-TTTT-GAGA--A-AT--------T-----------T---TATC--A-GA--AAAC---G--ACC--T--A-----TATT-G-----A-T-T
gi|7 : -TTC--AGTCAAAG---TGGCGT-CG---------GGG-TAGCGT---CT---CAAATGAATCTACGCT-AGTAA-AAA--G-AG-TG-CAGAA-GTTGCTTGGTCATAT---TT-----------T-GAA-TCA-TTTT-GAGA--A-AT--------A-----------T---GATC--A-GA--AAAC---T--A-C--T--TA----TATT-G-----A-T-TATTTAT-A---A-AAA---TTA--CT--T----ACATGT-AT---G-AGACATTTC-TGTGAAA--TATGA-ACAACA-T--TAT-A-AG-ATCGAA-AT-T-C--ATACTT-TATTT-ACA-TC-C--GG-T-CTATT--T-TTTA--CGGAG-TAGTCC--A-AGAAGAT-GCGACT-GCATCTG-A-AG-----------AT-GTTAT--T-----G---T---------AT----TG--C---------GC-AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAAT------ATT-TT-----AGA-TTAA-CAAAGTTCTC-CTTG-TT--GATC--TA-ATCG-TAAAC-----AAATTAA-TCT----TG-TTATGAAAC----------G-AAAG-GGCAA-GGAAACT-G-G-CAAAAA--------G--GAGAGCA-C-ACCAAAATG-GCA--A-ATACAA-TA--TAA-C-AGTAAACAG-TA--GAT-AT--TGTT--TATTCCA------TA--G-TTGTTGTG---ATA-AGTTGCTGTG--TTTTGT-ATGT-------GAAAAA-A------CG---ACAACA-ATAT-TAAGAC--A-GTGT-AA-GAT-GG-TC-C-AT-GGA--TC-CA-TTG-TTTAC-TTGAG-CAT-CTG--A-TTAAC-CGTT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-TA--TTTCAAGGG-AAT-ATCAAGTT-TC----T-GA--TT---TTGT----TGT-TT-TAAT--ATG---TCT-TTGTT-Agagatgaaaaatta
gi|3 : TC--AGTTAAAA-AGTGGCGC-CG---------GGGATAGCGC---CTT--GAAATGAATCTACG-T-AATAA-AAA--G-AG-TG-CAGAAATTTGCTTGGTC--ATA--TT-----------T-GAA-TCATTTTT-GAGA--T-ATG-------A-----------TTCAGA-C--A-GA--AAAC---T--A-C--T--GTA---TATT---------T-TATTTAT-----A-AAA---TGA--CT--T----ACATGT-AT---G-AGAACATTTATGTGAAA--TGTGA-ACAAGA-T--TAT-A-AGCATCGAA-ATTT-C--ATACTT-TATTTTACA-T--C--CG-T-C-A-TTAT-TTTA--CGGAG-TAGCCC--G-A-AAGAT-ACGACT-GCATCCGAAGAATTT-TCAT---AT-GTTAT--T-----G---T------------A-ATG--C---------GGCAT-TTAA-GC-TC--AAACA-A-TGTACAT-GC------GGGAAT------A-GTTT-----AGA-TTAA-CAAAGTTT---CTTG-TT--GAT---TATCTCG-TAAATAAT---AATT-A-TCT----TC-TTATGAAAC--GATCAAC-G-AAAG-TGCAG-AACAACT-G-G-CAAAAC----------AGAGAGCA-C-ACCAAAATG-GTA--ATACACAA-TA--TTAAC-AGTAAACAGCTA--GAT-AT--TATT--TATTCC--A---TTA--GC-TGTTGTG---TTA-AGTTGCTGT-GTTTTTGT-ATGT-------GAAAAA-AAAACCCTG---ACAACA-ATAT-TAAGAC--AAGTGT-AA-GAG-GG-TC-C-AT-GGG--TC-CA-TCG-TT-AC-TTGAA-CAG-CTG--A-TCAAC-CGTT--CG-ATTTG-TTT---CA-C--GAATTTTAG-AT-TA--TTTCAAGGG-AAT-GTGAAGTT-TC----T-GA--TT---TTGT----TGTGTT-TAATA-ATA---TCTATTATTGACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNN--NAGAATTTTAA----TGTTAGTAATTAATGCTTATT--TATT-AA-AG-TGGT------AATTCCAAGTGGA--CAAAACAC-TAAATTTTACAGTTTTT-ATTGAAAATC-AAAAAC-G--GAGAT-CTTGAA--GATC-TGA--TAC-AATTA--CAAAA---ATCT---TGGAGAAGC-A-CAT-TT-GAA--TTACAAAAATCTT--G--G-G--AAACAA-AT---TTT--AAAA-TTCAAA-A-A-TCTT-----G--GAAATA-C------AATAT-T-ATT-AAGTT-CTTG---GAAC---ATT--GCCTTG--AGAT-GTCAAGCAC-T-TAG---ACAAATG--TATGCTAA---GA-TTC---AATT-AAATAAGAGATTGAC------ATTACC--AG-AT--------G----CA-AGAGAT-A--AAAT---GCAATATTTGTGAATCCTAAAT-A-TTGCTTgtaattaatgtttat
gi|18 : AGCGC---CT---GAAATGAATGTACGCT-AAT-A-AAA--GGAG-TG-CAGAATTT-GCTTAGTC--ATA--TT-----------TTGAA-CCA-TTTT-GAGA--A-ATGATCAGATA-----------TTTCAA-T--G-AACAAAAC---T--A-C--T--TA----TATT-G-----A-T-TATTTAT-A---A-AAAA--TTA--C---TTACAA-GTATTA----G-ATA---TTTCTGACAAA--TGTGA-ACAAGA-C--TTT-A-AG-ATCGAA-A--TTC--ATACTT-TATTTA-CA-TT-C--GG-T-C-TATTAT-TT-A--CAGAG-TAGCCC--G-AGAAGAC-GCGACT-GCATCCG-A-AGTTT-GT-CAAGAT-GTTAT--TGTAACGCGCTCTTGTAAAGAAAA-GTGAAC------------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-
gi|31 : CGACT-GCATCCG-A-AGTTT-AT-CAAGAT-GTTA
gi|15 : g-GC-TTG-AAACG-A-TGTAAAT-GC------GGGAAT------A-T-TTT----AGA-TTAA-CAAAGTTTTC-CTTT-TT--GATC--TA-ATTG-TAAAC-----AAATTAA-TCT----TG-TTATAAAAC--GATCAAC-G-AAAG-TTCAA-GAAAACT-C-G-CAAAAA--------G--GAGATCA-C-ACCAAAATG-GTA--A-ATCCAA-TA--TAA-C-AGTAAACAG-TA--GAT-AT--AATT--TATTCCATACATGTA--GC-TGTTGTG---ATA-AGTTGCTGT-GTTTTTGT-ATGT-------GAAAAA-AAA--CCCA---ACGATA-TTAT-TATTAC--A-GTGT-AA-GA-------------GGG--TC-CA-TTG-TTTAA-TTGAA-CAG-CTG--A-TCAAC-CGTT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-TA--TTTCAAGGG-AAT-AGCAAGTT-TC----T-GA--TT---TTGT----TGT-TT-TAAT--ATG---TCT-TTATT-GACAAAAaattgtaacgcgctcaaagaa
gi|26 : GTGT-AA-GAG-AG-TT-C-AT-GGG--TC-CA-TTG-TTTAT-TTGAA-CAG-CTG--A-TTAAC-C--TTTCG-A-TTG-TTT-----TCAAGAATTTTAGAA---ATTTTACAAGGA-AAT-AGCAAGTT-TC----T-GA--TT---TGT-----TGT-TT-GAAT--ATaacaaaacaaaacaaaaaaggagagagagagaagagattgactgtt
gi|25 : a-GGA--TC-CA-TGGGTTTAC-TTGAA-CAG-CTG--ACTTAAC-CATT--CG-A-TTG-TTT-----TCAAGAATTT-AGAAT-TAA-TTACAAGGG-AATAGCAAAGTT-TCTTTTT-GA--TT---TT------TGT-TTGTAA---ATAACGTCT-TTATT-gcagtatttatattgaattcgttgattttggctattgtta
gi|27 : A-CAG-CTG--A-TCAAC-CGTT--CG-A-TTG-TTTT--CA-C--TAATTTTAGAAT-TA--TTCCAAGGG-AAT-AGCAAGTT-TC----T-GA--TT---TTGT----TGT-TT-TAAT--ATG---TTT-TTATT-GACAAAAgaattcgttgattttggcatcgttaagacgtcctctttttc
gi|20 : --GAATTTTAGAAT-TA--TTACAAGGG-AAT-ATCAGGTT-TC----T-GA--TT---TTGT----TGT-AT-TAAT--ATG---TCT-aacaaaccaccaccccccaaaggaaaagagagagagagaagagaataactgtta
gi|13 : GAAGGGAAGAATTTAAACTGTTAGTAA---TTTAACTGCT-----TAATT--C-T--ATT----C--AA-AGT-GGTA-----ATCTCCAA-TGGAACC-AAA-ACATAATTTTACCAG-TTTTTACTGAAATGCACAAAACCGGA--GATCTTTGAA--GATC-TGA--TACTAATCA---AAAAAAT-CCT---TGGAGAAGCCA-CAATTT-GAAATT-ACAAAATC------TTG-GGAAAACAATA----TTTTAAAAA-TTCAAA-A-A-TCTTTG---G--AGAA-ATC------AAATTATTATTTGAGTT-GCTGTGAG-AC-A-TTTGTGCCTTGGAG-ATAGTCAAGCAC-T-TAGACAA-GAATGTCTGC-TTAAAATGA-TTTCAGAGTTAAAA-AAGACATTGaattgaattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatagagaataactgatagtactcaatgtttattttttgaaatggtaactccagtggacaaaacatatttgacatttttattgaaaattaaaaacggagatcttgaaaatacaat
gi|20 : agacagagagagagagaAGAGAA-----TA-ACTGAT---AG---T--AC----T-----CAATG--T-TT-ATTTTTTG--AA-A--TGGTA-----A-CTCCAG-TGGA--C-AAA-ACATA--TTTGACAT-TTTT-ATTGAAAATT-AAAAAC-G--GAGAT-CTTGAA--AA--------TAC-AATacacttaaacaagatgcaagtatagaattaacatgccacatctttattgcttccaggtcagaatccaggaaatttctggttagtggggggggggggggggc
gi|4 : gaattttagaattattacaagggaatatcaggtttctgattttgttgtattaatatgtctaattgaattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatT--TAG---T--AA----T-----TAATG--T-TT-ATTTTT-C--AA-AGT-GGTACATGTAATTCCAG-TGGA--C-AAA-ACATAAATTT--TAG-TTTTTATTGAAAATTAAAAA-C-GGA--GAT-CTTAAA--GATC-TGA--TAC-AATTA-----AAAACATCT---CGGAGAAAC-A-CA--TTTGAAATT-ACAAAAATCCT--G--GAG--AAACAA-A----TTT--AAAT-TTCAAAAA-AATCTT-----GGGAGAA-A-C------AAATTAT-ATTGA-GTT-CTTG---G-A-GACATTG--CCTTGGAG-ATAGTCAAGCAC-T-TAG---A-CAA----------------A-TTC---AATA-AAATAAGAGCATGAC------ATTAC------ATG---TACCAGATGCACGAAGAA-T--AAATG-CACA---TTTGTGAAT-TTAGAT-A-TTGCTTCATA-TTGAGAAAATT-CAA-CAGCGTTA-------------TTTTATTTACC-ATATT--------TGCAATAT-GTGCACAATGAG-----ATCATGTTTATTTT-GAAAG-ACA-GT---ATG-AT-GGTTT--TGA-C---GAAAA--A---ATAA-T--TTATT-TT---GTTT--GAA-AG--CAAAT--TAGAATAA--TTAAA-AT-G-TG-ACACATAT-GT----ATA--CTGAT-GTCTCATACTACATGTAT---CA--CAGTACC-G-GTA--CTCAA-ATTTCCAAAT-G--TTTTGT--TCAAACG-GA--CCACTA-TA-T-TA-TA-TTAAAC---TCC--------------------AATCAGGTAATTAAAACTCTGTAA---ATA--AAA-------CCAC-ACAATA
gi|29 : tgATTCAAAAATCA----TG-GAAGAAAC-A-CA--TTTGAAATT-ACAAAAATCTT--G--G-G--AA--AA-T----TTT--AAAA-TTCAAAAT-A-TCTTG----G--AGAT-A-C------AAATTAT-ATTG-AGTT-CTGG---G-A-GACATT--GCCTTGGA-GATAGTCAAGcatgtagaatggaacgcacaatatgataaatattgagtatacgtattaggatgtagaatttagagtagcaaatcatggcgtttgaactcctaagcaagaatggctatcaccaaggtgatggcttcatattctctgatttatcgagagggaggcagtgtgttgcaaattgtgctgtattctaaattaattttgaaagatgtgaatttcaaaaatggtcataaag
gi|11 : caaTCAAAAAAT-CTTGCG---AGAAAC-A-CA--TTTGAAATT-ACAAAAATCTT-----G-G--AAACAA-A----TTT--AAAA--TAAAAAA-A-TCTCTG---G--AGAA-A-C------AAATGAT-ATTG-CGTT-CTTG---G-A-GA-CTT--GCCTTGGCCGATA-TC-AGCAC-TATAG---A-CAATG--TATGCTAA---GATTTC---AATT--AA-ATGAGATTGAAGACAATATCA-C-GAG-A-----TGC------CA-GAAGAA-T--AAA-G-CACA---TTTGTGAAT-CTAAAT-ATTTGCTTCATA-TTGCG-AAATTC--A-CAGCGTT--------------ATTT--TTA---ATTTTAAACCAATTGCAATAT-GTGCACATTGAG-----ATCATTGATATTTT-GAAAG-ACA-GT---ATGAAT-CGGTT--TGA-CA--AAAAA--ATGAACAG-T--GCATT-TT---GTTT--GAA-AG--CAAAT-TTAGAATAA--TTAAA-ATAG-TGCAC-CATAT-GT----ATA--CTCGTG--TTCATAC------TCT---CA--CAGTAC--G-GTA-CTTCA--------AATTGG--TTTG-T--TCAAACG-GA--CCACTA-TA-T-TA-TATTTAAAC---TCC--------------------AATCAGG-
gi|22 : cgacacacaTCAAAAAAT-CTTGCG---AGAAAC-A-CA--TTTGAAATT-ACAAAAATCTT-----G-G--AAACAA-A----TTT--AAAA--TAAAAAA-A-TCTCTG---G--AGAA-A-C------AAATGAT-ATTG-CGTT-CTTG---G-A-GA-CTT--GCCTTGGCCGATA-TC-AGCAC-TATAG---A-CAATG--TATGCTAA---GATTTC---AATT--AA-ATGAGATTGAAGACAATATCA-C-GAG-A-----TGC------CA-GAAGAA-T--AAA-G-CACA---TTTGTGAAT-CTAAAT-ATTTGCTTtttaaatctctgtaaataagaccacacaaatacatgtt
gi|8 : aca-GAGCATGATATACCAGATGCATGAAGAA-TGTAAATG-AACA---TTTGTGAAT-TTAAAT-A-TTGCTTCATACTGA-GAGAAATACAATCAGCGCTATTTCACTCCGGGATTTCACTTA-CCATATT--------TACAACAT-TTGCACA--GAGAG---ATCATGTTTATTTT-GAAAG-ACA-GT---ATG-AT-GATTT--TGA-A---AAGAA--ATG-ATAA-T--GCATT-TT---GTTT--GAA-AG--CAAAT--TAGAATTATTTTAAACAT-G-TG-ACACATAT-GT----ATA--CTGGT-GTCTCATTC------TAT---CA--AAGTACC-G-GTA--CTTAAAATTCC-AATT-T--TTTTGT--TCAAAAG-GA--CCACCA-TG-G-TA-TA-TCAAAT---TCC--------------------AATCAGGTAATTAAAACTCTGTAA---ATA--AAA-------CCAC-ACAATA
gi|21 : tataccaatatatcaataaaacatTTGAGA-TCTAT-GT-TTTATTTTTGAAAG-ACAAGGTA-GTGAATTGGTTT--TGA-TCTAAAAAAT-ATG-ATAA-TTGGCGATTTT---G--TTTGAA-ATTGCAAATG----AATAA--TCAAA--T-G-TG-ACA----------CGATA---TG-------TATACTT----TATC--CA-CTAGTACC-G-GTA--CTCA--------AATT-GGTTTTGTT--TCAAACGTGA--CCACTTATATT-TATTA-TCAAACATTC-C--------------------AATCAGG-AATAAcatgtaaaatggaacccacaatataataaatattgagtatacatgcatctttaggatataggatttagaattgcaaaacacggtatttaaactactaagcaagactgactatcatcaagtaaatgatgatttgtcgagagggaggcaattgtgctgtattcttaattaaagctcattacgaaaggtgtgaattttaaaaatgatctaaacatga
gi|23 : T-GAAAGGAC--G--AGATG-AT-GGTTTGCCAATC---AAAAATAATG-ATAACT--GCA---TTTTGG--TTTGAA-AG--CAA-T--TAGAATAT--TTAAA-AT-GTTG-ACACAT---------ATATACTGGTGTCTGCATAC------TAT---CATCCAGTAC---CGTA--CTCAAATT----A----G--TTTG----TTCAACG-GA--CCACTATAA-TCTA-TA-TTAAAT---C-C--------------------AATCAGG-tctctgtataatatatagggaccatcacattacatgtaaaa
gi|16 : TAA--TTAAA-AT-G-TG-ACACATACTGT----ATA--CTGGT-GTCTCATAC------TATCCCCA-CTAGTAAC--CGTA--CTCAA-ATTTCCAAAT-G--TTCTTTGTTCAAACG-GAACCACCTA-TA-T-TA-TA-TTAAAC---T-CCAATCACTATTAAAAACTCTGAT-AAA-AAAACCCACAC----ATGCATGGTAAAATGGAACCCACAATAATAATtaattaaaatctctgtaaataagaccacccacaataca
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): CCAAAGTTTTGTTTAAACGTACCCCTATATGTATAAATACTCAATCAGGTAATTAAACTGCTGTAAAGTAAAAACCATAACATGTACATCAATAGAACCCACAAATAAATAATATATTGGAATGATACATATTAGGATGTACGAAATTTAGAGGAGCAAGCAGGCGTTTAACCTCTTTAGAGAAGGCAAGACTGCACTATCACCATAGGTGATAGGACTTCGATACTCGTCATTGTCGATAGGGAGGTAGTTGTGTTCTGCAGAAATTGCGCTAAATAGTAATATCTTACATTAAAGTCACATATGATAGATGTGAATTTCAAAAATGGTCTAAAATGACTT
Unaligned ( gi|28 ): TGTGTATTAAAAAATTGTTATATGTAATTACAAAAAGATTAAATCATCTTTGCTGCATTGTGAGGACATTACATGTACTGTAAGGATCGTAAAGTCACATTGCTACACATACATAAAACTGTACGTAGAACTGTACATATT
Unaligned ( gi|32 ): CTTTAGATATTAGCTGAAAACTCATGGGTTAATCCCAAATTAAATC
Unaligned ( gi|33 ): CAGGGGCGGATCAGGAATTCTGGTGGGGGGAGGGGGGC
Unaligned ( gi|34 ): AAATGACTGACATTTCAAGCAACTGTTTACTA
Alignments
lowQualScore : 111111 111 111111111 1 11 1 11 11111111111 22222222222222222222222222 11111 1111111 1111 11 2222 11 1 222 666666666666666666666666666666666 111111111111 111111 1111111111 2222222 11 22222222222222 11 1 11 22222222 11 2222222 1 222222 11 11 11 11 777777777777777777777777777777777777777777777777777777777777777777777777777777 111 1 111 22 222222 2 1111111 11 1 1 11 111 1 33333333 1111 111111 111 2 2 1 111111 444444444444444444444444444444444 1111 11 33333 1 11 55555555555555 1111 22222 1 1 333333 11111111 1 11111 222 33333 1111 222222222222 1111 222222 111 111 666666666666 1111 2
lowQualScore : 1 000000 7 3 55 3 44 444 3 222222222 3 555 777 3 3 2 3 00 3 6 3 3 6 3 66 88888888888 6 6 3 3 44 3 44 99999999999999999999999999 555 888888 44 33333 44 0000000 3 3 3 555 3 2 44 7777 3 66666 3 3 3 5 22 44 3 44 3 44 3 3 3 6 3333 44 3 88 6 77 3 6 55 77 3 3 44 3 3 3 3 3 6 555 55 111 3 44 999 3 333333333333333333333333333333333 222222222222 3 3 3 3 3 3 3 000000 5555555555 3 3 7 3 55 666 3 3 4444444 3 7777 3 33 8 55 8 4 4 4 4 55555555555555 4 4 1 4 66 4 4 00 3 4 00 4 4 777 66 55555555 66 55 777 4 33 4 2222222 4 66 888 1 5 5 1 5 5 66 5 5 4 4 4 66 88 4 4 4 4 55 8 4 4 55 55 8 8 2 000000 00 3 3 00 3 3 3 7 55 7777 8888888 7 3 7 22 777 4 4 11 666 2 2 888888888888888888888888888888888888888888888888888888888888888888888888888888 777 11 0 6 666 22 3 6 777777 6 3 9999999 6 99 6 6 6 77 1 9 3 7 66 6 6 000 6 99 6 5 0 11111111 4 5 5 5 5 5 0 888 66 77 5 5 5555 66 5 3 5 5 3 0 888 5 5 444444 88 222 888 4 11 77 0 2 3 5 1 333333 5 1 5 888 6 66 888 5 999999999999999999999999999999999 0000 00 5 77 5 5 5 5 7 44444 0 33 88888888888888 5555 88888 7 0 0 6 111111 8 6 6 55555555 1 6 99 55555 111 6 5 77 5 44444 5 77 5 0 1111 999999999999 77 5 5 5 5 5 5 5 2222 5 0 5 3 5 1 444444 000 555 5 5 77 5 5 5 000000000000 66 66 5 5 5 5 5 2222 5 5 5 66 0 5 88 5 5 5 5 5 66 77 5
lowQualScore : . ...... . . .. . .. ... . ......... . ... ... . . . . .. . . . . . . .. ........... . . . . .. . .. .......................... ... ...... .. ..... .. ....... . . . ... . . .. .... . ..... . . . . .. .. . .. . .. . . . . .... .. . .. . .. . . .. .. . . .. . . . . . . ... .. ... . .. ... . ................................. ............ . . . . . . . ...... .......... . . . . .. ... . . ....... . .... . .. . .. . . . . . .............. . . . . .. . . .. . . .. . . ... .. ........ .. .. ... . .. . ....... . .. ... . . . . . . .. . . . . . .. .. . . . . .. . . . .. .. . . . ...... .. . . .. . . . . .. .... ....... . . . .. ... . . .. ... . . .............................................................................. ... .. . . ... .. . . ...... . . ....... . .. . . . .. . . . . .. . . ... . .. . . . ........ . . . . . . . ... .. .. . . .... .. . . . . . . ... . . ...... .. ... ... . .. .. . . . . . ...... . . . ... . .. ... . ................................. .... .. . .. . . . . . ..... . .. .............. .... ..... . . . . ...... . . . ........ . . .. ..... ... . . .. . ..... . .. . . .... ............ .. . . . . . . . .... . . . . . . ...... ... ... . . .. . . . ............ .. .. . . . . . .... . . . .. . . .. . . . . . .. .. .
lowQualScore : 4 555555 3 6 00 3 22 222 1 333333333 1 000 999 1 1 3 1 44 1 2 1 7 1 1 55 88888888888 2 2 1 1 22 1 22 77777777777777777777777777 444 888888 22 55555 22 8888888 1 1 3 888 3 2 66 2222 3 44444 3 3 3 4 88 66 3 66 3 66 3 3 3 7 5555 66 3 88 7 99 3 7 22 88 3 3 66 3 3 1 1 1 2 444 22 555 1 22 666 1 888888888888888888888888888888888 555555555555 3 1 1 1 1 3 3 555555 9999999999 6 6 3 6 00 444 6 6 8888888 6 7777 6 55 0 55 0 0 4 4 6 22222222222222 4 4 9 4 11 4 4 66 3 4 66 4 4 888 11 44444444 11 44 888 4 33 4 2222222 4 11 888 4 7 7 7 0 0 99 0 0 4 4 4 11 33 4 4 0 0 55 0 0 0 55 55 0 0 0 444444 00 6 6 00 6 6 6 3 00 7777 2222222 3 6 3 33 000 0 8 00 888 0 3 000000000000000000000000000000000000000000000000000000000000000000000000000000 000 88 6 0 555 55 5 7 555555 7 7 3333333 7 22 7 7 7 55 3 5 2 3 55 7 7 222 7 22 7 5 4 55555555 5 0 0 0 0 0 4 888 99 55 0 0 6666 99 0 2 0 0 2 1 888 0 0 444444 22 222 888 4 88 55 5 5 2 7 4 444444 0 4 0 888 2 99 666 0 777777777777777777777777777777777 4444 77 7 99 7 7 7 7 0 88888 0 22 22222222222222 2222 55555 0 0 0 0 888888 0 7 7 77777777 7 7 22 22222 555 7 7 99 7 99999 7 99 7 1 6666 333333333333 99 7 7 7 7 7 7 7 1111 7 7 7 0 7 7 333333 000 333 7 7 99 7 7 7 000000000000 00 99 0 0 0 0 0 8888 0 0 0 99 0 9 66 0 0 0 0 0 99 99 7
consensus : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-------CA-GA--------------AAAC---T------AC--T---TATAT--T-G-----A-T-TATTTAT-A---AAAA-TGA--C-T-ACA-TGT-A---T-G-AG-ACATTTCATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-AT-T-C--ATACTT-TATTTAACA-T--C-GG-TCTATTATTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-GT--A----------T----------AAA------TGC--GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAA----------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-----A-TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--AT---GTCT-TTATTGACAA--AATGGANCAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTT--TAGT-TAATTAATGCTT-ATTTTTATT-AA-AGT-GGTA-----AATTCCAA-TGGA--C-AAA-ACA-TAAATTT-ACAGTTTTT-ATTGAAAATCAAAAAACGGAGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATACC--TGCGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTC-AAAAA-ATCTTTGG---AGAAA-CAA-A------TTAT-ATTGGAGTTCTTG---GA-GACTTG-GCCTTGGA-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAAGACG--ATAT-TACC-GA-G-ATTGCCGCA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TT-GCTTCATATTGA-GA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-AC-A--GTAATGAAT-GGTTT--TGA-C---AAAAA-A-TGA-TAA-T--GC-ATTTTGTTTTTGAA-A--G-CAAAT--T-AGAA------------TAA--TTAAA-AT-GT-G-ACAC-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--CT-C-AA-ATT--CAA---TTG-TTT-GT--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
Reference ( family-1008 ) : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-------CG-GA--------------AAAC---T------AC--T---NNTAT--T-G-----A-T-TATTTAT-A---AAAA-TNA--C-T-ACA-TGT-A---T-G-AG-ACATTTTATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A--T-C--ATACTT-TATTTAACA-T--C-GG-TCNNTTATTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-GT-GA----------T----------AAA------TGC--GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAA----------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-----A-TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--AT---GTCT-TTATTAACAA--AATGGACCAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTT--TAGTTTAATTAATGTTT-ATTTTTACT-AA-AGTTGGTA-----AATTCCAA-TGGA--C-AAA-ACA-TAAATTTAACAGTTTTTTATTGAAAATTAAAAAACGGAGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATACC--TGTGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTC-AAAAA-ATCTTTGG---AGAAA-CAA-A------TTAT-ATTGGAGTTCTTG---GACGANTTG-GCCTTGGANGATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAAGACA--ATAT-TACC-GA-G-ATTGCCACA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TT-GCTTCATATTG--GA-AAATT-CAA-CAGCGTT-------------ATTTT--ACTT---A-CATATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-AC-A--GTAATGAAT-GGTTT--TGA-C---AAAAATA-TGA-TAA-T--GC-ATTTTGTTTTTGAA-A--G-CAAAT--T-AGAA------------TAA--TTAAA-AT-GT-G-ACAC-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--CT-C-AA-ATTT-CAA---TTG-TTT-NT--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGG-AATNAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
gi|1 : GGGTCACGTGACCC-GTCTAT------T-GGTTAA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTCTATA--CT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GA--------CG-AA--------------AAAC---T------AC--T---ATTAT--T-G-----A-T-TATTTAT-A---AAAA-TCA--C-T-A-A-TGT-A-----G-AG-ACCTTTTATGTGAAA--TGTGA-A--GAAGA-T--TAT-A-AG-ATCGAA-A--T-C--ATACTTATATTTAACA-T--C-GG-TCATTTATTTTCCGG-AG-TAGC--CT-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTT-TTC---AT-GT--T---ATTCGTCGA----------T----------AAA------TGC--G---------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATA-ATT----------AGA-TTAA-CAAAGTTTTC-TTTG-TT--GATC--TA-ATCG-TAAAC-AGTTTAAATTAA-TCT----TG-TTATGAAACA-GATCAACTG--AAAG-TGCAA-GAAAACT-G-GCAAAAC----------GGAGAGAGCA-C-ACTAAAATGCGTA--A-ATACAA-TA--TAATCAGTAAACAG-TA--GA-T-TT---TATTTATATTCCA-----AGTA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA--C-AAGAC-ACG--TGT-AA-GAG-GG-T-CAT-GGG--TC-CA-TCGTTCAC-TTGAA-CA-AC--TTA-TCAAC-C-G--CTTACG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--TT----TTG-------TGT-TT-T-AAT--AT---ATCT-TTATTACCAA--AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATATAGACTGTT--TAGTTTAATTAATTTTTCATTGTTA-T-AA-AGTTGGCA-----AATTCCAA-TGGA--C-AAACACA-TAAATTTATCAG--TTTGATTGAAAATCAAAAAACGAAAAGATTTT-GAA--GATC-TG---TAC-AATTATTCAAAAAATACCTGTGTGGAGAAGC-A-CA--TTGAAATT-TACAAAATTCTT---ATTG-GAAA-CAA-A----TTT--AAAA-TTC-AAACA-ATCTT--G---AGAAA-CAA-T------TTAT-ATTGAAGTTCTTG---GACGAATTG-GCCTTGGAGGATAGTCAAGCAA-T-TAG---A-AAATGTTAT-C-TAA---GA-TTC--AATTAAA-AAGAG-ATTGGA--------AT-TACC-GA-GCATTGCCACA-GAAGAA-C--AAA-TTC-ACAACTTTGTGAAT-CTAAAT-A-TT-GCTTCATA-TGCCGA-AAATTCCAA-CAGCGTT--------------TTTT--A-TT---A-CGTATTATGCAATATAGTGCACATTGAGAATCTATCATGTTT-ATTTT-GAAAG-AC-G--TTAATGTAT-GGTTT--TGA-C---AAAAA-A-TGA-TAA-T--GC-A--TTG----TGAACA--GTCAAGTGGT-AGAA------------TAA--TTAAA-AT-GT-G-ACAC-ATC-TCGTAGCGATATCTGGTGGTTT-TATACAA----TAT---CA-CCAGTACCTGCGTACCCT-C-AAGAT----AA---CTG-TTTGATAATCTAAAG-G-ACAA-C-TAGTA--T-TA-TA-TTAA-AC--T-CAAT-AGG-AAGAACAA-CA-C------AA-T-GATAAACCA--CAACAATAAT
gi|10 : GGGTCACGTGACCCCGTCTAT------T-GGTTTATCT--G-TTC--AGTTAAAG---TGGCGC------------GGG-TAGCGC----T---GATATGA-TCTACGCT-AA-T-A-AAAAAG-AG-TGGCAGAATTT-GCT-GGTC-ATA--TT-----------T-GAAGTCA-GTTT-GAGA--AA--AT--GAT-------CA-GAG-------------AAAC---T------AC--T---TATAC--TCG-----A-T-GATTTAT-A---ATAA-AGA--C-TTGCA-TGT-A---TCGTAG-ATATTT-ATGTGAAA--TGTGA----CAAGAAT--TA--A-AG-CTCGAATA--T-TCTATACTT--ATTTA-CA-T--CCGG-GCTATTATTT-ACGGTAG-TCAT--CC-G-AGAAGATTACGACTTGC----TGA-AG---TTT-TTC---AG-GT--T---ATT-G---G----------T----------ATG------TCC--GC--------AT-TTAA-GC-TCG-AAACG-AGTGTAA-T-GC------GG-AATATTTT----------AGA-TTAA-CAAAGTTTTC-TTTG-TT--G-------------------A--TTGAATTAA-TCT----TG-TTA-GAAACA-GATCAAC-G---AAG-TCCAA-GAAAACT-G-GCAAAAA-----------G-GAGAGCA---ACT-AAATG-GT---A-ATATAT-TA--T-A-CAGTAAACAG-TT--GA-T-ATTAATATT--TATCC-------A-TA--GGCTGTTGT----ATATAGTTGCTGGTGTTTTTGT-ATGT-------GAAAAA-AAA--CCCC---ACt
gi|11 : cgTCAAAAAAT-CT--TGCG-AGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G--AAA-CAA-A----TTT--AAAA-T-A-AAAAA-ATCTCTGG---AGAAA-CAA-A------TGAT-ATTGC-GTTCTTG---GA-GACTTG--CCTTGGCCGATA-TCA-GCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAG-ATTGAAGACA--ATAT-CAC--GA-G-AT-GCCA---GAAGAA-T--AAA--GC-ACA--TTTGTGAAT-CTAAAT-A-TTTGCTTCATATTG--CG-AAATT-CA--CAGCGTT-------------ATTTTTAATTTTAAA-C-CAAT-TGCAATAT-GTGCACATTGAGA-----TCATTGAT-ATTTT-GAAAG-AC-A--GTA-TGAAT-CGGTT--TGA-C---AAAAAAA-TGAACAG-T--GC-ATTTTGTTT--GAA-A--G-CAAAT--TTAGAA------------TAA--TTAAA-ATAGT-GCAC-C-ATA-T-GT----ATA-CTCGT-GT-T-CATAC------TCT---CA-C-AGTAC--G-GTA--CTTC-AA-ATTG---------G-TTT-GT--TCAAACG-G-ACCA-C-TA-TA--T-TA-TATTTAA-AC--TCCAATCAGG--TTTAAAT-CT-CTG-TA-AA-T-A--AGACCA--C-ACAA
gi|12 : cgacacacaGGGCCACGTGACGCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GT-GGCGC-CA---------GGG-TAGCGC---CT---TAAATGAATCTACGCT-AA-TAA-AAA--G-AG-TG-CAGAA-CTTGCTTAGCC-ATAT-TT-----------T-GAA-TCA-TTTT-GAGG--AATGATAAGATATTTTAAAA-AA--------------AAACAAAC------AC--CA--TATAT--T-G-----A-T-TATTTAT-A---AAAA-TTA--CTT-ACA-TGT-A---T-T-AG-ATATTTC-TGACAAA--TATAA-A--CAAGA-C--TAT-A-AG-ATCGAA-AT-T-C--ATACTT-TATTTACTT-C--C-GG-TATA-TGTTTTACGG-AG-AAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---AGT-GT-AA----------CGCGCTCAAAGAAA------GGTAAAC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATCTTAAACTAACAAAGA-TTAA-CAAAGATTGT-CTTA-TT--GATC--TA-TTCG-TAAAC------AAATTAA-TCT----TG-TTATGAAAC--GATGAAC-G--AAAG-TGCGT-GAAAACatacatgtt
gi|13 : cgGAAGGGAAGAATTTAAACTGTTAGTAATTTAACT---GCTT-AATTCTATTCAA-AGT-GGTA-----ATCTCCAA-TGGAACC-AAA-ACA-TAATTTTACCAGTTTTT-ACTGAAATGCACAAAACCG-GAGATCTTTGAA--GATC-TGA--TACTAATCA---AAAAAAT-CC--T-TGGAGAAGCCA-CAATTTGAAA-T-TACAAAA-TCTT---G--G-GAAAACAATA----TTTTAAAAA-TTC-AAAAA--TCTTTGG---AGAAATCAA-A------TTATTATTTGAGTTGCTGTGAGAC-ATTTGTGCCTTGGA-GATAGTCAAGCAC-T-TAGACAA-GAATG-TCTGCTTAAAATGATTTCAGAGTTAAAAAAGAC-ATTGAgga
gi|14 : agacagagagagagagaGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCAC-CA---------GGG-TAGCGC---CT---CAAATGAATCTACGCT-AA-T-ATAAA--A-CG-TG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCA-TTTT-GAGA--TAT-AT--GAT-------CA-GA--------------AAAC---TCAATTCAA--T---TCTATACT-G-----A-T-TATTTAT-A---AAAA-TGA--CTT-ACA-TGT-A---T-G-AG-ACATTTC-TGTGAAA--TAATA-A--CAAAA-T--TAT-A-AG-ATCGAA-ATTT-C--ATACTT-TATTT-ACATT--C-GG-TCCATT-TTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---ATT-GT-AA----------T----------TAA------TGC--GCATTTAATGAT-TTAA-GC-TCG-GAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGATTTC-CTTG-TT--GACC--TA-ATCG-TAAAC------AAATTAA-TCT----GG-TTAcacttaaacaagatgcaagtatagaattaacatgccacatctttattgcttccaggtcagaatccaggaaatttctggttagtggggggggggggggggc
gi|15 : cgg-GC-TTG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTT-TT--GATC--TA-ATTG-TAAAC-A-----AATTAA-TCT----TG-TTATAAAAC--GATCAAC-G--AAAG-TTCAA-GAAAACT-C-GCAAAAA----------GG--AGATCA-C-ACCAAAATG-GTA--A-ATCCAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---AATT--TATTCCATACATG-TA--GCT-GTTGTG---ATA-AGTTGCTGTG-TTTTTGT-ATGT-------GAAAAA-AAA--CCCA---ACGATATTA-TT-ATTAC-A-G--TGT-AA-GAG-GG-TCCAT-------------TGTTTAA-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--AT---GTCT-TTATTGACAA--AA---AACAAAACAA
gi|16 : -T--GC-ATTTTGTTT--GAA-A--G-CAAAT--T-AGAATACATGTACATGTAA--TTAAA-AT-GT-G-ACAC-ATACT-GT----ATA-CTGGT-GTCT-CATAC------TATCCCCA-CTAGTAAC-C-GTA--CT-C-AA-ATTTCCAAATGTTC-TTT-GT--TCAAACG-GAACCACC-TA-TA--T-TA-TA-TTAA-AC--TCCAATCACT-ATTAAAAA-CT-CTGATA-AA-A-A--AACCCA--C-ACAaacaaaaaaggagagagagagaagagattgactgtt
gi|17 : -TTT-GT--TTAAACG-T-ACCC-C-TA-TA--TGTA-TA---AATAC--TC-AATCAGGTAATTAAA--CTGCTG-TA-AAGTAA--AAACCA--T-tgcatggtaaaatggaacccacaataataataaatatatattaggatgtagaattagatactagcaaatcatggcgttaaactcctttagaagcaaagactcactatcaccaagtgatggactttcatattctttcttgaattgttggcaaattgtgctatattcttaattaaattcgttatgaaagatgtgaatttcaaaaatgatctaaa
gi|18 : ccaaagtAGCGC---CT---GAAATGAATGTACGCT-AA-T-A-AAA--GGAG-TG-CAGAATTT-GCTTAGTC-ATA--TT-----------TTGAA-CCA-TTTT-GAGA--AAT-----GAT-------CA-GATATTTCAATGAACAAAAC---T------AC--T---TATAT--T-G-----A-T-TATTTAT-A---AAAAATTA--C-TTACA-AGT-A---T-T-AG-ATATTTC-TGACAAA--TGTGA-A--CAAGA-C--TTT-A-AG-ATCGAA-AT-T-C--ATACTT-TATTT-ACATT--C-GG-TCTATTA-TTTACAG-AG-TAGC--CC-G-AGAAGAC-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---ATT-GT-AACGCGCTCTTGT----------AAAGAAAAGTGA--AC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-acatgtacatcaatagaacccacaaataaataatatattggaatgatacatattaggatgtacgaaatttagaggagcaagcaggcgtttaacctctttagagaaggcaagactgcactatcaccataggtgataggacttcgatactcgtcattgtcgatagggaggtagttgtgttctgcagaaattgcgctaaatagtaatatcttacattaaagtcacatatgatagatgtgaatttcaaaaatggtctaaaatgactt
gi|19 : GGGTCACGTGACCCAGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCGG-AG---------GGG-TAGCGC---CC---GAAATGAATCTACACT-AA-TAA-AAA--G-AG-TG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCG-TTTT-GAGA--AAT-AT--GAT-------CA-GA--------------AAAC---T------AC--T---TATAT--T-G-----A-T-TATTTAT-A---AAAA-TGA--CTT-ACA-TGT-A---T-G-AG-ACATTTC-TGTGA--------A-A--CAAGA-TAATAT-A-AG-ATCGAA-AT-T-C--ATACTT-TATTT-ACA-T--CTGGTTCTATT-TTTTACTG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GTAT-CCGA-AG---TTT-GAC---A----------------------------------------AGA------TG----------------TTAA-GC-TAG-AAACG-
gi|2 : acgGGGTCACGTGACCCCGTCTAT------TTGGTTTA-CTTGG-CTCTCAGTTAAA--GTTGGCGCGCG---------GGG-TAGCGC---CTTAAGAAATGAATCTACGCT-AA-T-A-AAAA-G-AG-TG-CAGAATTCTG-TTGGTC-ATAGTTT-----------T-GAAATCA-TTTT-GAGA--AAT-AT--GAT--------A-GA--------------AAAC---T------ACCTT---ATTAT--TTG-----A-T-TATT-AT-A---AAAA-TGAACT-T-ACA-TGTCA---T-G-AA-ATATGTTATGTGGAAATTGTGA-A--CAAGA-T--TAT-A-AG-ATTGAACA--TTC--ATACTT-TATTTA-CA-T--CCGGCTCTATTATTTTACGG-AG-TAGC--CC-GCAGAAGAT-ACGACT-GCAT-C-GA-AG---TTT-TTC---AT-GT--T---ATT-GT-------------------------AA------TGC--GC--------AT-TTAAAGC-TCG-AAACG-A-TGTAAATTGC------GGGGAAATTTT----------AGAATTAA-CAAAGTTGTC-TTTG-TTTGAATC--TA-ATCGCTAAAT-A--TTAAATTAAATCT----TG-TTATGAAACACGATCAAC-G--AAAGCTGCAATGAAAACTTG-GCAAAC-----------GG-GAGAGCAGC-ACTAAAATG-GTA--A--TACAA-TAGATAAACAGTAAACAG-TATAGA-T-AT---TATT---ATTTCC-----A-TA--GCT-GTTATGTTGGTA-AGTTGC-GTG-TTTTTGTCATGTTGA----AAAAAA-AAA--CACG---ACAACAATA-TT-A-GAC-A-G--TGTTAACGAGCGGCTCCATAGGG--TC-CA-TCGTTTAC-TTGAA-CAAGC--TGA-TCAAAAC-G--TT--CGCA-ATG-TTC---TCCC--GAATTTTAGAAC-T-A--TTTCAAGGG-AAT-GTCAAGTT-TCTTGA--TTTTGCTTG----T--TGT-TT-TGAAT--AT---ATCT-TT-----------ATGGACCAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAC--ATT--AACTG-T--TAG--TAATTTATGCTT-ATTTTATTT-AACAGTTGGT------AATTCCAA-TGGA--CAAAA-ACA-TAAATTT-ACAG-TTTTTATTGAAAATTCAAAAACG--GAGATATT-GAAAGAATCTTGACTTAC-AACT-TTCAAAAAAT--C--TTTGGAGAAGC-ACCA-TTTGAAA-TCTACAAAAATCTTGGAG--G-GAAA-CAC-ATTGGTTT--AAAATTTC-AAAAACATCTTTGGAGAAGAAA-CAA-AATTAATTTAT--TTGGAGCTGATT---GA-GACATG-GCCTTGGA-GATAGTCAAGCACTT-TAG---ACAAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTT--GAC-----AT-TACCAGATG-ATT--TA-A-GAAGAATT--AAATTGC-ACA--TTTGTGAAT-C--AATAA-TT-GC
gi|20 : acg--GAATTTTAGAAT-T-A--TTACAAGGG-AAT-ATCAGGTT-TC-TGA--TT----TTG----T--TGT-AT-T-AAT--AT---GTCT-
gi|20 : AGAGAA-----TAA-CTGAT---AGT--ACTCAATGTTT-ATTTTT--T-GA-AAT-GGTA-----A-CTCCAG-TGGA--C-AAA-ACA-TA--TTTGACA--TTTTTATTGAAAATT-AAAAACG--GAGATCTT-GAA--------AA--TAC-AATaattgaattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatagagaataactgatagtactcaatgtttattttttgaaatggtaactccagtggacaaaacatatttgacatttttattgaaaattaaaaacggagatcttgaaaatacaat
gi|21 : gaattttagaattattacaagggaatatcaggtttctgattttgttgtattaatatgtctaattgaattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatTTGAGA----TCTATGTTTTATTTTTGAAAG-AC-AAGGTAGTGAATTGGTTT--TGA-TCTAAAAAATA-TGA-TAA-TTGGCGATTTTGTTT--GAA-ATTG-CAAAT-----GAA------------TAA--TCAAA--T-GT-G-ACACGATA-T-GT----ATA-CT-------T-TAT----------C---CA-CTAGTACC-G-GTA--CT-C-AA-ATT---GG---TT--TTG-TT--TCAAACGTG-ACCA-CTTA-TAT-T-TATTA-TCAA-ACATTCCAATCAGG-AAT--AAT-CT-CTG-TATAA-T-A--
gi|22 : TCAAAAAAT-CT--TGCG-AGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G--AAA-CAA-A----TTT--AAAA-T-A-AAAAA-ATCTCTGG---AGAAA-CAA-A------TGAT-ATTGC-GTTCTTG---GA-GACTTG--CCTTGGCCGATA-TCA-GCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAG-ATTGAAGACA--ATAT-CA-C-GA-G-A-TGC--CA-GAAGAA-T--AAA--GC-ACA--TTTGTGAAT-CTAAAT-ATTT-GCTTtatagggaccatcacattacatgtaaaa
gi|23 : acaT-GAAAGGACGA--G--ATGA-T-GGTTTGCCAATC---AAAAATAATGA-TAACT--GC-ATTTTGGTTT-GAA-A--G-CAA-T--T-AGAA------------TAT--TTAAA-AT-GTTG-ACAC-ATA-T-------ATA-CTGGT-GTCTGCATAC------TAT---CATCCAGTACC-G--TA--CT-C-AA-ATT----A-----G-TTT-GT--TCAA-CG-G-ACCA-C-TA-TAATC-TA-TA-TTAA-A---TCCAATCAGGTAATTAAAATCT-CTG-TA-AA-T-A--AGACCACCC-ACAATA
gi|24 : CATGATCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-G-TGGCGC-CG---------GGT-AAGCGC---AT---GAAATGAATTTACGCT-AATT-C-AAA--C-AG-TG-CAGAA-TTTGCTTGGTC-ATA--TTTTGAATGTTTAT-GAA-TCA-TTTT-GAGA--AAT-TT--TAT-------CA-GA--------------AAAC---G------AC--C---TATAT--T-G-----A-T-Tca
gi|25 : G-GA-TCCAT-GGG--T---------TTAC-TTGAA-CA-GC--TGACTTAAC-C-A--TT--CG-A-TTG-TTT-----TCAAGAA-TTTAGAAT-TAA--TTACAAGGG-AATAGCAAAGTT-TC-T----TT----TTGATTTT--TGT-TTGTAAATA-AC---GTCT-TTATTGAgagatgaaaaatta
gi|26 : -A-G--TGT-AA-GAG-AG-TTCAT-GGG--TC-CA-TTGTTTAT-TTGAA-CA-GC--TGA-TTAAC-C-T--TT--CG-A-TTG-TTT-----TCAAGAATTTTAGAAA-T-T--TTACAAGGA-AAT-AGCAAGTT-TC-TGA---T----TTG----T--TGT-TT-G-AAT--ATGCAGTAT-TTATattcgttgattttggcatcgttaagacgtcctctttttc
gi|27 : A-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTTT---CA-C--TAATTTTAGAAT-T-A--TTCCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--AT---GTTT-TTATTGACAA--AAattgaattcgttgattttggctattgtta
gi|29 : ATTCAAAAATCA----TG-GAAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAA---AA-T----TTT--AAAA-TTC-AAAAT-ATC-TTGG---AGATA-CAA-A------TTAT-ATT-GAGTTCTGG---GA-GACATT-GCCTTGGA-GATAGTCAAGaacaaaccaccaccccccaaaggaaaagagagagagagaagagaataactgtta
gi|3 : caaTC--AGTTAAAA-AGTGGCGC-CG---------GGGATAGCGC---CTT--GAAATGAATCTACG-T-AA-TAA-AAA--G-AG-TG-CAGAAATTTGCTTGGTC-ATA--TT-----------T-GAA-TCATTTTT-GAG----AT-AT--GATTCAGA--CA-GA--------------AAAC---T------AC--TG--TATAT--T---------T-TATTTAT-----AAAA-TGA--CTT-ACA-TGT-A---T-G-AGAACA-TTTATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AGCATCGAA-ATTT-C--ATACTT-TATTTTACA-T--C-CG-TC-ATTATTTTACGG-AG-TAGC--CC-G-A-AAGAT-ACGACT-GCAT-CCGA-AGAATTTT-CAT---AT-GT--T---ATT-GT-------------------------AA------TGCG-GC--------AT-TTAA-GC-TC--AAACA-A-TGTACAT-GC------GGGAATAGTTT----------AGA-TTAA-CAAAGTTT---CTTG-TT--GAT---TATCTCG-TAAAT-A--AT-AATT-A-TCT----TC-TTATGAAAC--GATCAAC-G--AAAG-TGCAG-AACAACT-G-GC-AAAA----------CA-GAGAGCA-C-ACCAAAATG-GTA--ATACACAA-TAT-TAA-CAGTAAACAGCTA--GA-T-AT---TATT--TATTCCA-----T-TA--GC-TGTTGTG---TTA-AGTTGCTGT-GTTTTTGT-ATGT-------GAAAAA-AAAACCCTG---ACAACAATA-TT-AAGACAA-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCG-TTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-ATTTG-TTT---CA-C--GAATTTTAG-AT-T-A--TTTCAAGGG-AAT-GTGAAGTT-TC-TGA--TT----TTG----T--TGTGTT-T-AATA-AT---ATCTATTATTGAC
gi|3 : AGAA--TTTTAA--TGTT---AGT--AATTAATGCTT-ATTT--ATT-AA-AGT-GGTA-----A-TTCCAAGTGGA--C-AAA-ACACTAAATTTTACAGTTTTT-ATTGAAAATCAAAAA-CGGAGA--TCTT-GAA--GATC-TGA--TAC-AATTA--CAAAAA---TC--T-TGGAGAAGC-A-CA-TTTGAA--T-TACAAAAATCTT---G--G-GAAA-CAA-AT---TTT--AAAA-TTC--AAAA-ATC-TTGG---AAATA-CAATA------TTAT--T--AAGTTCTTG---GAACATT---GCCTTG--AGAT-GTCAAGCAC-T-TAG---ACAAATG-TATGC-TAA---GA-TTC--AATTAAATAAGAG-ATTG--------ACAT-TACC--A-G-AT----GCA-AGAGAT-A--AAA-TGCAATA--TTTGTGAATCCTAAAT-A-TT-GCTTcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaattttaatgttagtaattaatgcttatttattaaagtggtaattccaagtggacaaaacactaaattttacagtttttattgaaaatcaaaaacggagatcttgaagatctgatacaattacaaaaatcttggagaagcacatttgaattacaaaaatcttgggaaacaaattttaaaattcaaaaatcttggaaatacaatattattaagttcttggaacattgccttgagatgtcaagcacttagacaaatgtatgctaagattcaattaaataagagattgacattaccagatgcaagagataaaatgcaatatttgtgaatcctaaatattgctt
gi|30 : tcagttaaaaagtggcgccggggatagcgccttgaaatgaatctacgtaataaaaagagtgcagaaatttgcttggtcatatttgaatcatttttgagatatgattcagacagaaaactactgtatattttatttataaaatgacttacatgtatgagaacatttatgtgaaatgtgaacaagattataagcatcgaaatttcatactttattttacatccgtcattattttacggagtagcccgaaagatacgactgcatccgaagaattttcatatgttattgtaatgcggcatttaagctcaaacaatgtacatgcgggaatagtttagattaacaaagtttcttgttgattatctcgtaaataataattatcttcttatgaaacgatcaacgaaagtgcagaacaactggcaaaacagagagcacaccaaaatggtaatacacaatattaacagtaaacagctagatattatttattccattagctgttgtgttaagttgctgtgtttttgtatgtgaaaaaaaaaccctgacaacaatattaagacaagtgtaagagggtccatgggtccatcgttacttgaacagctgatcaaccgttcgatttgtttcacgaattttagattatttcaagggaatgtgaagtttctgattttgttgtgtttaataatatctattattgaccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTCACGTGACCCCGTCTATTACTAGT-AGTTTA-CT--G-TTC--AGTCAAAG---TGGTGC-AG---------GGG-TAGCAC---CT---CAAATGAAT
gi|31 : gtca-GCGACT-GCAT-CCGA-AG---TTT-ATCAAGAT-GT--TAA-ATT-GT-------------------------AA------CGC--GC--------
gi|4 : T--TAGT--AATTAATGTTT-ATTTTT--C-AA-AGT-GGTACATGTAATTCCAG-TGGA--C-AAA-ACA-TAAATTT--TAGTTTTT-ATTGAAAATTAAAAA-CGGAGA--TCTT-AAA--GATC-TGA--TAC-AATTA-----AAAACATC--T-CGGAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCCT---G--GAGAAA-CAA-A----TTT--AAAT-TTCAAAAAA-ATCTTGGG---AGAAA-CAA-A------TTAT-ATT-GAGTTCTTG---GA-GACATT-GCCTTGGA-GATAGTCAAGCAC-T-TAG---A-CAA----A-------------TTC--AATAAAATAAGAGCAT----GACATTACATGTACC--A-G-A-TG-CAC--GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-TTAGAT-A-TT-GCTTCATATTGA-GA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCATATT-TGCAATAT-GTGCACAATGAG-----ATCATGTTT-ATTTT-GAAAG-AC-A--GT-ATG-AT-GGTTT--TGA-C---GAAAA----AA-TAA-T--TT-ATTTTG--TTTGAA-A--G-CAAAT--T-AGAA------------TAA--TTAAA-AT-GT-G-ACAC-ATA-T-GT----ATA-CTGAT-GTCT-CATACTACATGTAT---CA--CAGTACC-G-GTA--CT-C-AA-ATTTCCAA---ATGTTTT-GT--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtcaaagaa
gi|5 : tgGGGTC-CGTGACCCCGTCTCT------TCGGTTTA-CT--GCTTC--AGTTAAAAAGTTGGCGC-CGTCCGAGGCTGGT-TAGCGCAACCT---GAAATGAATCTACGCT-AA-TAA-AAA--G-AGTTG-CAGAATTTTG-TTGGTC-A-A--TTTA---------T-GAA-TCA-TTTTAGAGAACAAT-AT--GAT-------CA-G---------------AAAC---T------AC--TGTATATAT--TCG-----C-TCTATTTAT-AAACAAAA-TGA--C-T-----TGT-AAACT-G-AG-ACA-TTTATGTGAAA--TG-GA-AAGTACAG-T--TATAA-AG-ATCGAA-T--TAC--ATACTT-TATTT-ACA-TCCC-GG-TCTATAA--TTACGG-AGCTAGCCTCC-G-AGAAGAT-ACGAC--GCAT-CCGA-AG---TTT-TTC---GA-GTACT---GCT-GT-------------------------AA------TGC--GC--------ATATTAA-GCTTCGAAAACG-A-TGTAAAT-GCATAAGGGGGAATATTTT----------AGA-TTAACCAAAGTTTTCTTTTG-TT--GATC--TA-ATCG-TAAATAA--TTACATTAA-TCTTACGTA-TGATGAAAC--GATCAAC-GGCAAAGTTGCAA-GAAAACT-GCGCCAAAACAGGCGCGGGGG-AAGAGCA-CAACT-AAATG-GTA--A-ATCCAACTA--TAA-CAGT-AACAG-AAT-GA-TAAT---TATT--TATTCC------A-TA--GCTTG-TGTA---TTA-AGTTGCTGT-GTTTGTGT-ATGTTGGAAGAGAAAAACAAA--CCCGCGCACAACCATATTT-AAGAC-A-GACTGT-AA-GAG-GG-TCAAT-AGGCTTCGCAGTCGTTTACTTTGAACCA-GCCTCGATTCAAC-C-GTTTT--CGTATTTG-TTTTCCCACC--GAATTTTAACATCT-A--TTTCAAGGGCAAT-GTCACGTTGTCTTGAGCTT----TTG----TTGTGT-TT-T-AATCAAT---ATCT-TTATTTACcatgtagaatggaacgcacaatatgataaatattgagtatacgtattaggatgtagaatttagagtagcaaatcatggcgtttgaactcctaagcaagaatggctatcaccaaggtgatggcttcatattctctgatttatcgagagggaggcagtgtgttgcaaattgtgctgtattctaaattaattttgaaagatgtgaatttcaaaaatggtcataaag
gi|6 : cgGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCCACGCT-AA-T-A-AAA--G-AGATG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCA-TTTT-GAG---AAT-AT---AT-------CGAAA--------------AAAC---T------AC--T---TATAT--T-G-----AGT-TATTTATAA---AAAA-TCA--C-C--TA-TGT-----T-G-AG-ACCATTTATGTGAAT--TGTGAGA--CAAGA-T--TAT-ATAG-ATCGAA-A--T-C--ATACTT-TATTTAA-A-TC-C-GG-TCTATTATTTTACGG-AG-TAGC--CT-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTTAGTC---ATAGT--TGTAATC-GC-GA----------T----------AAA-------GC--G-----------------GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-ATTT-GT--GATCTATA-ATCG-TAAAC-A--TTAAATTAA-TCT----TGTTTATAA-----GAACAACAG--AAAG-TGCAA-GAAAACT-G-GC-AAAA----------GC-GAGAGCA-C-ACTAAAAC--GTA--A-ATACAA-TA--TAATCAGTAAACAG-TA--GATT-AT---T-TT--TATTCCA-----G-TACTGCTTGTTG-G---AT--AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAAC-ATA-TTCAAGAC-A-G--TGT-TA-GAG-GG-CTCAT-GGG--T--CA-TCGTTCAC-TAGAA-CA-AC--TTA-TCAAC-CGG--TT--C--A-TTG-TTT---CATC--G-ATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--------TTG----T--TGTGTT-T-AAT--A
gi|7 : cg-TTC--AGTCAAAG---TGGCGT-CG---------GGG-TAGCGT---CT---CAAATGAATCTACGCT-AG-T-A-AAAA-G-AG-TG-CAGAAGTT-GCTTGGTC-ATA--TT-----------TTGAA-TCA-TTTT-GAGA--AAT-AT--GAT-------CA-GA--------------AAAC---T------AC--T---TATAT--T-G-----A-T-TATTTAT-A---AAAA-TTA--C-TTACA-TGT-A---T-G-AG-ACATTTC-TGTGAAA--TATGA-A--CAACA-T--TAT-A-AG-ATCGAA-A--TTC--ATACTT-TATTTA-CA-T--CCGG-TCTATT-TTTTACGG-AG-TAGT--CC-A-AGAAGAT-GCGACT-GCAT-CTGA-AG-------------AT-GT--T---ATT-GT--A----------T-------------------TGC--GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTCTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A-----AATTAA-TCT----TG-TTATGAAAC--GA----------AAG-GGCAA-GGAAACT-G-GCAAAAA----------GG--AGAGCA-C-ACCAAAATG-GCA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TGTT--TATTCCA-------TA--G-TTGTTGTG---ATA-AGTTGCTGTG--TTTTGT-ATGT-------GAAAAA-A------CG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAT-GG-TCCAT-GGA--TC-CA-TTGTTTAC-TTGAG-CA-TC--TGA-TTAAC-C-G--TT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-ATCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--AT---GTCT-TTGTTAGTAATTAATG
gi|8 : -TATAC-CAA---TATATC--AATAAAACA-------TGAGCATG--ATAT--ACC--A-G-AT----GCATGAAGAA-TGTAAA-TGA-ACA--TTTGTGAAT-TTAAAT-A-TT-GCTTCATACTGA-GAGAAATA-CAATCAGCGCTATTTCACTCCGGGATTTC--ACTT---ACCATATT-TACAACAT-TTGCACA--GAGAG---ATCATGTTT-ATTTT-GAAAG-AC-A--GT-ATG-AT-GATTT--TGA-A---AAGAA-A-TGA-TAA-T--GC-ATTTTG--TTTGAA-A--G-CAAAT--T-AGAA------------TTATTTTAAACAT-GT-G-ACAC-ATA-T-GT----ATA-CTGGT-GTCT-CATTC------TAT---CA--AAGTACC-G-GTA--CT-TAAA-ATTC-CAAT--TTT-TTT-GT--TCAAAAG-G-ACCA-C-CA-TG--G-TA-TA-TCAA-AT--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtttat
gi|9 : GGGTCACG-GACCC-GTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GT-GGCGC-CG---------GG--TAGCGC---CT---GAAATGAATCTACGCTGAA-T-A-AAA--G-AG-TG-CAGAATTT-GCTTGGTC-ATA--TT-----------T-TAA--AA-TTTT-GAGA--AAT-AT--GAT-------CA-GA--------------AAAC---T------AC--T---TATAT--T-GTATATA-T-TATTTA--A---AA-----A--C-T-GCATTGT-T---T-G-AG-ACA-TTTATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-AT-T-C--ATACTT-TATTT-ACA-T--C-GG-TCTATTA-TTTACGG-AG-TAGC--CCGG-AGAAG-T-ACGACT-GCATGCCAA-AG---TTT-TTC---AT-GT--T---ATT-GT-------------T------------A------TGC--GC--------AT-TAAA-GC-TCG-AAACGAA-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGGTTTCTTTTGTTT--GAT-------TC---------------ATTAA-TCT----T--TAATGAAAC--GATCAAC-G--AAAT-TGCAA-GGAAACT-G-GCAAAAA-----------G-GAGAGCA-C-ACTAAAGTG-CTAATA-ATA-AT-TA--TAC-AAGTAATCAG-TT--GA-T-AT---TATT--TATTCC------A-TA--GC-TGTTGTG---ATA-AATTGCTGTGTTTTGTTT-ATGT-------GAAAAA-AAA--catgtaaaatggaacccacaatataataaatattgagtatacatgcatctttaggatataggatttagaattgcaaaacacggtatttaaactactaagcaagactgactatcatcaagtaaatgatgatttgtcgagagggaggcaattgtgctgtattcttaattaaagctcattacgaaaggtgtgaattttaaaaatgatctaaacatga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): TGTGTATTAAAAAATTGTTATATGTAATTACAAAAAGATTAAATCATCTTTGCTGCATTGTGAGGACATTACATGTACTGTAAGGATCGTAAAGTCACATTGCTACACATACATAAAACTGTACGTAGAACTGTACATATT
Unaligned ( gi|32 ): CTTTAGATATTAGCTGAAAACTCATGGGTTAATCCCAAATTAAATC
Unaligned ( gi|33 ): CAGGGGCGGATCAGGAATTCTGGTGGGGGGAGGGGGGC
Unaligned ( gi|34 ): AAATGACTGACATTTCAAGCAACTGTTTACTA
Alignments
lowQualScore : 111111 111 111111111 11 1 11 1111111111111 1111111111111 22222222222222 222222 111 22 11 1 222 666666666666666666666666 11111111 111111 1111111111 2222222 11 22222222222222 11 1 11 22222222 11 2222222 1 222222 11 11 11 11111 11 222 777777777777777777777777777777777777777777777777777777777777777777777777777777 111 1 1 222 222222 1 1111111 111 11 111 1 33333333 222222 1111 111111 2 111111 111 1 111111 333333333 1 444444 1 1111 11 1 11 1 1 55555555555555 11 111 1 1 1 33333 2222222 1 22222 11 33333 222222222222 1111 222222 111 11 6666666666666 1 1111
lowQualScore : 1 000000 7 3 55 3 44 444 3 222222222 3 555 777 3 3 9 3 33 3 6 3 1 9 3 33 9999999999999 6 3 3 44 3 44 6666666666666 11111111111111 555 44 6666 000000 6 77777 3 3 555 555 44 555 44 3 66666 3 3 3 3 44 44 3 44 3 44 3 3 3 6 6 3 3 88 6 77 3 6 77 3 3 44 3 3 3 3 3 6 555 55 111 3 44 999 3 3 999999999999999999999999 3 11111111 3 3 3 3 3 3 3 000000 5555555555 3 3 7 3 55 666 3 3 4444444 3 7777 3 33 8 55 8 4 4 4 4 55555555555555 4 4 1 4 66 4 4 00 3 4 00 4 4 777 66 55555555 66 55 777 4 33 4 2222222 4 66 888 1 5 5 1 5 5 66 5 5 4 4 4 66 88 4 4 4 4 55 8 4 4 55 55 8 8 2 000000 00 3 3 00 3 3 3 7 55 7777 8888888 7 3 7 22 00000 4 11 000 1 1 888888888888888888888888888888888888888888888888888888888888888888888888888888 777 11 0 6 5 555 6 6 000000 6 3 9999999 6 99 6 6 6 999 6 3 7 66 6 6 000 6 99 6 5 0 33333333 4 5 5 5 5 5 0 000000 5 5 5 5555 66 88 5 5 3 0 888 5 5 444444 88 1 5 5 888888 222 2 3 5 1 333333 5 1 5 888 6 66 888 5 000000000 0 88 4 8 5 666666 1 0000 00 5 77 5 5 1 3 33 0 3 0 88888888888888 33 7 777 2 0 0 0 6 55555 8 6 6 2222222 1 6 99 11111 55 6 5 77 5 44444 5 77 5 55 77 999999999999 77 5 5 5 5 5 5 5 2222 5 0 5 3 5 1 444444 000 77 0 5 5 77 5 5 77 1111111111111 0 66 5 5 5 5 5 2222 5 5 5 66 3 33 5 5 5 5 5 5 66 77 5
lowQualScore : . ...... . . .. . .. ... . ......... . ... ... . . . . .. . . . . . . .. ............. . . . .. . .. ............. .............. ... .. .... ...... . ..... . . ... ... .. ... .. . ..... . . . . .. .. . .. . .. . . . . . . . .. . .. . . .. . . .. . . . . . . ... .. ... . .. ... . . ........................ . ........ . . . . . . . ...... .......... . . . . .. ... . . ....... . .... . .. . .. . . . . . .............. . . . . .. . . .. . . .. . . ... .. ........ .. .. ... . .. . ....... . .. ... . . . . . . .. . . . . . .. .. . . . . .. . . . .. .. . . . ...... .. . . .. . . . . .. .... ....... . . . .. ..... . .. ... . . .............................................................................. ... .. . . . ... . . ...... . . ....... . .. . . . ... . . . .. . . ... . .. . . . ........ . . . . . . . ...... . . . .... .. .. . . . . ... . . ...... .. . . . ...... ... . . . . ...... . . . ... . .. ... . ......... . .. . . . ...... . .... .. . .. . . . . .. . . . .............. .. . ... . . . . . ..... . . . ....... . . .. ..... .. . . .. . ..... . .. . .. .. ............ .. . . . . . . . .... . . . . . . ...... ... .. . . . .. . . .. ............. . .. . . . . . .... . . . .. . .. . . . . . . .. .. .
lowQualScore : 4 555555 3 6 00 3 22 222 1 333333333 1 000 999 1 1 2 1 55 1 2 1 1 8 1 55 1111111111111 2 1 1 22 1 22 5555555555555 22222222222222 444 22 5555 444444 2 77777 1 1 888 111 66 666 66 3 44444 3 3 3 3 99 66 3 66 3 66 3 3 3 7 7 3 3 88 7 99 3 7 88 3 3 66 3 3 1 1 1 2 444 22 555 1 22 666 1 1 222222222222222222222222 1 22222222 3 1 1 1 1 3 3 555555 9999999999 6 6 3 6 00 444 6 6 8888888 6 7777 6 55 0 55 0 0 4 4 6 22222222222222 4 4 9 4 11 4 4 66 3 4 66 4 4 888 11 44444444 11 44 888 4 33 4 2222222 4 11 888 4 7 7 7 0 0 99 0 0 4 4 4 11 33 4 4 0 0 55 0 0 0 55 55 0 0 0 444444 00 6 6 00 6 6 6 3 00 7777 2222222 3 6 3 33 00000 0 00 000 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 000 88 6 0 5 777 7 7 000000 7 3 3333333 7 22 7 7 7 222 7 2 3 55 7 7 222 7 22 7 5 4 00000000 5 0 0 0 0 0 4 111111 0 0 0 6666 99 22 0 0 2 1 888 0 0 444444 22 2 0 0 888888 000 5 2 7 4 444444 0 4 0 888 2 99 666 0 111111111 9 00 3 6 7 777777 4 4444 77 7 99 7 7 4 0 22 0 2 0 22222222222222 88 0 555 5 5 0 0 0 66666 0 7 7 2222222 7 7 22 88888 88 7 7 99 7 99999 7 99 7 99 99 333333333333 99 7 7 7 7 7 7 7 1111 7 7 7 0 7 7 333333 000 11 7 7 7 99 7 7 99 0000000000000 0 99 0 0 0 0 0 8888 0 0 0 99 2 88 0 0 0 0 0 0 99 99 7
consensus : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--C-T-AC--A-TGT-A---T-G-AG-A-CATTTCATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTAACA-T--C-GG-TCTATTATTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-G-T--A-----------TAAA------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAA----------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-----A-TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGAACAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG-T-AATTAA-TGCTT-ATTTTTATT-AA-AG-TGGTA-----AATTCCAA-TGGA--C-AAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATCAAAAAACGGAGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATACC--TGCGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTC-AAAAA-ATCTTTGG---AGAAA-CAA-A------TTAT-ATT-GAGTTCTTG-GA-GAC--NTN-GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAAGACG--ACAT-TACCGAG-ATTGC-GCA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGNGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-AC-A--GT-ATGAAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-ATTTTG-TTTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--C-TCAA-A--TT--CAA---TTG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
Reference ( family-1008 ) : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--C-T-AC--A-TGT-A---T-G-AG-A-CATTTCATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTAACA-T--C-GG-TCTATTATTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-G-T--A-----------TAAA------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAA----------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-----A-TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGANCAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG-TTAATTAA-TGCTT-ATTTTTATT-AA-AG-TGGTA-----AATTCCAA-TGGA--C-AAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATCAAAAAACGGAGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATACC--TGCGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTC-AAAAA-ATCTTTGG---AGAAA-CAA-A------TTAT-ATTGGAGTTCTTG-GA-GAC--TTG-GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAAGACG--ATAT-TACCGAG-ATTGCCGCA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGAGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-AC-A--GTAATGAAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-ATTTTGTTTTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--C-TCAA-A--TT--CAA---TTG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
gi|1 : GGGTCACGTGACCC-GTCTAT------T-GGTTAA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTCTATA--CT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GA------C-------GAA--------------AAAC---T--AC----T------ATTATT-G-----A-T-TATTTATA---AAAA-TCA--C-T-A---A-TGT-A-----G-AG-A-CCTTTTATGTGAAA--TGTGA-A--GAAGA-T--TAT-A-AG-ATCGAA-A--TC-ATACTTATATTTAACA-T--C-GG-TCATTTATTTTCCGG-AG-TAGC--CT-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTT-TTC---AT-GT--T---ATTCG-TCGA-----------TAAA------TGC-G---------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATA-ATT----------AGA-TTAA-CAAAGTTTTC-TTTG-TT--GATC--TA-ATCG-TAAAC-AGTTTAAATTAA-TCT----TG-TTATGAAACA-GATCAACTG--AAAG-TGCAA-GAAAACT-G-GCAAAAC----------GGAGAGAGCA-C-ACTAAAATGCGTA--A-ATACAA-TA--TAATCAGTAAACAG-TA--GA-T-TT---TATTTATATTCCA-----AGTA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA--C-AAGAC-ACG--TGT-AA-GAG-GG-T-CAT-GGG--TC-CA-TCGTTCAC-TTGAA-CA-AC--TTA-TCAAC-C-G--CTTACG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--TT----TTG-------TGT-TT-T-AAT--ATA-----TCT-TTATTACCAA--AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATATAGACTGTTTAGTTTAATTAA-TTTTTCATTGTTA-T-AA-AGTTGGCA-----AATTCCAA-TGGA--C-AAACACA-TAAATTT-ATC-AG-TTTGATTGAAAATCAAAAAACGAAAAGATTTT-GAA--GATC-TG---TAC-AATTATTCAAAAAATACCTGTGTGGAGAAGC-A-CA--TTGAAATT-TACAAAATTCTT---ATTG-GAAA-CAA-A----TTT--AAAA-TTC-AAACA-ATCTT--G---AGAAA-CAA-T------TTAT-ATTGAAGTTCTTG-GACGAA--TTG-GCCTTGG-AGGATAGTCAAGCAA-T-TAG---A-AAATGTTAT-C-TAA---GA-TTC--AATTAAA-AAGAG-ATTGGA--------AT-TACCGAGCATTGCCACA-GAAGAA-C--AAA-TTC-ACAACTTTGTGAAT-CTAAAT-A-TTGCTTCATATGCCGA-AAATTCCAA-CAGCGTT--------------TTTT--A-TT---A-CGTATTATGCAATATAGTGCACATTGAGAATCTATCATGTTT-ATTTT-GAAAG-AC-G--TTAATGTAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-A--TTG----TGAACA--GTCAAG-TGGTAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATC-TCGTAGCGATATCTGGTGGTTT-TATACAA----TAT---CA-CCAGTACCTGCGTACCC-TCAAGA--T----AA---CTG-TTTGATAATCTAAAG-G-ACAA-C-TAGTA--T-TA-TA-TTAA-AC--T-CAAT-AGG-AAGAACAA-CA-C------AA-T-GATAAACCA--CAACAATAAT
gi|10 : GGGTCACGTGACCCCGTCTAT------T-GGTTTATCT--G-TTC--AGTTAAAG---TGGCGC------------GGG-TAGCGC----T---GATATGA-TCTACGCT-AA-T-A-AAAAAG-AG-TGGCAGAATTT-GCT-GGTC-ATA--TT-----------T-GAAGTCA-GTTT-GAGA--AA--AT--GAT-----C-------AGAG-------------AAAC---T--AC----T------TATACTCG-----A-T-GATTTATA---ATAA-AGA--C-TTGC--A-TGT-A---TCGTAG-A-TATTT-ATGTGAAA--TGTGA----CAAGAAT--TA--A-AG-CTCGAATA-TTCTATACTT--ATTTA-CA-T--CCGG-GCTATTATTT-ACGGTAG-TCAT--CC-G-AGAAGATTACGACTTGC----TGA-AG---TTT-TTC---AG-GT--T---ATT-GGT--A-----------TG--------TCC-GC--------AT-TTAA-GC-TCG-AAACG-AGTGTAA-T-GC------GG-AATATTTT----------AGA-TTAA-CAAAGTTTTC-TTTG-TT--G-------------------A--TTGAATTAA-TCT----TG-TTA-GAAACA-GATCAAC-G---AAG-TCCAA-GAAAACT-G-GCAAAAA-----------G-GAGAGCA---ACT-AAATG-GT---A-ATATAT-TA--T-A-CAGTAAACAG-TT--GA-T-ATTAATATT--TATCC-------A-TA--GGCTGTTGT----ATATAGTTGCTGGTGTTTTTGT-ATGT-------GAAAAA-AAA--CCCC---ACt
gi|11 : cgTCAAAAAAT-CT--TGCG-AGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT------G-GAAA-CAA-A----TTT--AAAA--TA-AAAAA-ATCTCTGG---AGAAA-CAA-A------TGAT-ATT-GCGTTCTTG-GA-GAC--TT--GCCTTGGCC-GATA-TC-AGCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAG-ATTGAAGACA--ATAT-CA-CGAG-A-TGC--CA-GAAGAA-T--AAA--GC-ACA--TTTGTGAAT-CTAAAT-ATTTGCTTCATATTGCG--AAATT-C-A-CAGCGTT-------------ATTTTTAATTTTAAACC--AAT-TGCAATAT-GTGCACATTGAG-----ATCATTGAT-ATTTT-GAAAG-AC-A--GT-ATGAAT-CGGTT--TGA-CA--AAAAA--ATGAACAG-T--GC-ATTTTG--TTTGAA-A--G-CAAATT--TAGAA------------TAA--TTAAA-ATAGT-G-CACC-ATA-T-GT----ATA-CTCGT-GT-T-CATAC------TCT---CA--CAGTA-C-G-GTA--CTTCAA-A--T---------TGG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TATTTAA-AC--TCCAATCAGGT--TTAAAT-CT-CTG-TA-AA-T-A--AGACCA--C-ACAA
gi|12 : cgacacacaGGGCCACGTGACGCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GT-GGCGC-CA---------GGG-TAGCGC---CT---TAAATGAATCTACGCT-AA-T-A-AAAA-G-AG-TG-CAGAACTT-GCTTAGCC-ATA--TT-----------TTGAA-TCA-TTTT-GAGG--AATGATAAGAT-----ATTTTAAAAAA--------------AAACAAAC--AC----CA-----TATATT-G-----A-T-TATTTATA---AAAA-TTA--C-TTAC--A-TGT-A---T-T-AG-A-TATTTC-TGACAAA--TATAA-A--CAAGA-C--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTACTT-C--C-GG-TATAT-GTTTTACGG-AG-AAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---AGT-G-T--AACGCGCT----CAAAGAAAGGTAA-AC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATCTTAAACTAACAAAGA-TTAA-CAAAGATTGT-CTTA-TT--GATC--TA-TTCG-TAAAC------AAATTAA-TCT----TG-TTATGAAAC--GATGAAC-G--AAAG-TGCGT-GAAAACatacatgtt
gi|13 : cgGAAGGGAAGAATTTAAACTGTT-AG-TAATTTAACTGCTT-AATTCTATTCAA-AG-TGGTA-----ATCTCCAA-TGGAACC-AAA-ACA-TAATTTT-A-CCAGTTTTTACTGAAATGCACAAAACCG-GAGATCTTTGAA--GATC-TGA--TACTAATCA---AAAAAAT-CC--T-TGGAGAAGCCA-CAATTTGAAA-T-TACAAAA-TCTT---G--G-GAAAACAATA----TTTTAAAAA-TTC-AAAAA--TCTTTGG---AGAAATCAA-A------TTATTATTTGAGTTGCTGTGA-GACATTTGTGCCTTGG-A-GATAGTCAAGCAC-T-TAGACAA-GAATG-TCTGCTTAAAATGATTTCAGAGTTAAAAAAGAC-ATTGAgga
gi|14 : agacagagagagagagaGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCAC-CA---------GGG-TAGCGC---CT---CAAATGAATCTACGCT-AA-T-ATAAA--A-CG-TG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCA-TTTT-GAGA--TAT-AT--GAT-----C-------AGA--------------AAAC---TCAAT----TCAATTCTATACT-G-----A-T-TATTTATA---AAAA-TGA--CTT-AC--A-TGT-A---T-G-AG-A-CATTTC-TGTGAAA--TAATA-A--CAAAA-T--TAT-A-AG-ATCGAA-ATTTC-ATACTT-TATTT-ACATT--C-GG-TCCATT-TTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---ATT-G-TA-A-----------TTAA------TGC-GCATTTAATGAT-TTAA-GC-TCG-GAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGATTTC-CTTG-TT--GACC--TA-ATCG-TAAAC------AAATTAA-TCT----GG-TTAcacttaaacaagatgcaagtatagaattaacatgccacatctttattgcttccaggtcagaatccaggaaatttctggttagtggggggggggggggggc
gi|15 : cgg-GC-TTG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTT-TT--GATC--TA-ATTG-TAAAC-A-----AATTAA-TCT----TG-TTATAAAAC--GATCAAC-G--AAAG-TTCAA-GAAAACT-C-GCAAAAA----------GG--AGATCA-C-ACCAAAATG-GTA--A-ATCCAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---AATT--TATTCCATACATG-TA--GCT-GTTGTG---ATA-AGTTGCTGTG-TTTTTGT-ATGT-------GAAAAA-AAA--CCCA---ACGATATTA-TT-ATTAC-A-G--TGT-AA-GAG-GG-TCCAT-------------TGTTTAA-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AA---AACAAAACAA
gi|16 : -T--GC-ATTTTGTTT--GAA-A--G-CAAA-T--TAGAATACATGTACATGTAA--TTAAA-AT-GT-GACA-C-ATACT-GT----ATA-CTGGT-GTCT-CATAC------TATCCCCA-CTAGTAAC-C-GTA--C-TCAA-A--TTTCCAAATGTTC-TTTG-T--TCAAACG-GAACCACC-TA-TA--T-TA-TA-TTAA-AC--TCCAATCA-CTATTAAAAA-CT-CTGATA-AA-A-A--AACCCA--C-ACAaacaaaaaaggagagagagagaagagattgactgtt
gi|17 : -TTTG-T--TTAAACG-T-ACCC-C-TA-TA--TGTA-TA---AATAC--TC-AATCAGGTAATT-AAA-CTGCTG-TA-AAGTAA--AAACCA--T-tgcatggtaaaatggaacccacaataataataaatatatattaggatgtagaattagatactagcaaatcatggcgttaaactcctttagaagcaaagactcactatcaccaagtgatggactttcatattctttcttgaattgttggcaaattgtgctatattcttaattaaattcgttatgaaagatgtgaatttcaaaaatgatctaaa
gi|18 : ccaaagtAGCGC---CT---GAAATGAATGTACGCT-AA-T-A-AAA--GGAG-TG-CAGAATTT-GCTTAGTC-ATA--TT-----------TTGAA-CCA-TTTT-GAGA--AAT-----GAT-----C-------AGATATTTCAATGAACAAAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAAATTA--C-TTAC--A-AGT-A---T-T-AG-A-TATTTC-TGACAAA--TGTGA-A--CAAGA-C--TTT-A-AG-ATCGAA-A-TTC-ATACTT-TATTT-ACATT--C-GG-TCTATTA-TTTACAG-AG-TAGC--CC-G-AGAAGAC-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---ATT-G-T--AACGCGCTCTTGTAAAGAAAAGTGA-AC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-acatgtacatcaatagaacccacaaataaataatatattggaatgatacatattaggatgtacgaaatttagaggagcaagcaggcgtttaacctctttagagaaggcaagactgcactatcaccataggtgataggacttcgatactcgtcattgtcgatagggaggtagttgtgttctgcagaaattgcgctaaatagtaatatcttacattaaagtcacatatgatagatgtgaatttcaaaaatggtctaaaatgactt
gi|19 : GGGTCACGTGACCCAGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCGG-AG---------GGG-TAGCGC---CC---GAAATGAATCTACACT-AA-TAA-AAA--G-AG-TG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCG-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--CTT-AC--A-TGT-A---T-G-AG-A-CATTTC-TGTGA--------A-A--CAAGA-TAATAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTT-ACA-T--CTGGTTCTATT-TTTTACTG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GTAT-CCGA-AG---TTT-GAC---A--------------------------------AGA------TG---------------TTAA-GC-TAG-AAACG-
gi|2 : acgGGGTCACGTGACCCCGTCTAT------TTGGTTTA-CTTGG-CTCTCAGTTAAA--GTTGGCGCGCG---------GGG-TAGCGC---CTTAAGAAATGAATCTACGCT-AA-T-A-AAAA-G-AG-TG-CAGAATTCTG-TTGGTC-ATAGTTT-----------T-GAAATCA-TTTT-GAGA--AAT-AT--GAT-------------AGA--------------AAAC---T--ACCTTAT------TAT-TT-G-----A-T-TATT-ATA---AAAA-TGAACT-T-AC--A-TGTCA---T-G-AA-A-TATGTTATGTGGAAATTGTGA-A--CAAGA-T--TAT-A-AG-ATTGAACA-TTC-ATACTT-TATTTA-CA-T--CCGGCTCTATTATTTTACGG-AG-TAGC--CC-GCAGAAGAT-ACGACT-GCAT-C-GA-AG---TTT-TTC---AT-GT--T---ATT-G-T--A--------------A------TGC-GC--------AT-TTAAAGC-TCG-AAACG-A-TGTAAATTGC------GGGGAAATTTT----------AGAATTAA-CAAAGTTGTC-TTTG-TTTGAATC--TA-ATCGCTAAAT-A--TTAAATTAAATCT----TG-TTATGAAACACGATCAAC-G--AAAGCTGCAATGAAAACTTG-GCAAAC-----------GG-GAGAGCAGC-ACTAAAATG-GTA--A--TACAA-TAGATAAACAGTAAACAG-TATAGA-T-AT---TATT---ATTTCC-----A-TA--GCT-GTTATGTTGGTA-AGTTGC-GTG-TTTTTGTCATGTTGA----AAAAAA-AAA--CACG---ACAACAATA-TT-A-GAC-A-G--TGTTAACGAGCGGCTCCATAGGG--TC-CA-TCGTTTAC-TTGAA-CAAGC--TGA-TCAAAAC-G--TT--CGCA-ATG-TTC---TCCC--GAATTTTAGAAC-T-A--TTTCAAGGG-AAT-GTCAAGTT-TCTTGA--TTTTGCTTG----T--TGT-TT-TGAAT--ATA-----TCT-TT-----------ATGGACCAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAC--ATT--AACTG-TTAG--TAATTTA-TGCTT-ATTTTATTT-AACAGTTGGT------AATTCCAA-TGGA--CAAAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATTCAAAAACG--GAGATATT-GAAAGAATCTTGACTTAC-AACT-TTCAAAAAAT--C--TTTGGAGAAGC-ACCA-TTTGAAA-TCTACAAAAATCTTGGAG--G-GAAA-CAC-ATTGGTTT--AAAATTTC-AAAAACATCTTTGGAGAAGAAA-CAA-AATTAATTTAT--TTGGAGCTGATT-GA-GAC--ATG-GCCTTGG-A-GATAGTCAAGCACTT-TAG---ACAAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATT-----TG--ACAT-TACC-AG-ATGATTTAA-GAAGAATT--AAATTGC-ACA--TTTGTGAAT-C--AATAA-TTGC
gi|20 : acg--GAATTTTAGAAT-T-A--TTACAAGGG-AAT-ATCAGGTT-TC-TGA--TT----TTG----T--TGT-AT-T-AAT--ATG-----TC--TAATTGA
gi|20 : AGAGAA-----TAA-CTGAT-AG-T-ACTCAA-TGTTT-ATTTTT--T-GA-AA-TGGTA-----A-CTCCAG-TGGA--C-AAA-ACA-TA--TTTGA-C-A-TTTTTATTGAAAATT-AAAAACG--GAGATCTT-GAA--------AA--TAC-AATattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatagagaataactgatagtactcaatgtttattttttgaaatggtaactccagtggacaaaacatatttgacatttttattgaaaattaaaaacggagatcttgaaaatacaat
gi|21 : gaattttagaattattacaagggaatatcaggtttctgattttgttgtattaatatgtctaattgaattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatTTGAGA----TCTATGTTTTATTTTTGAAAG-AC-AAGGTAGTGAATTGGTTT--TGA-TCTAAAAAAT-ATG-ATAA-TTGGCGATTTTGTTT--GAA-ATTG-CAAA-T----GAA------------TAA--TCAAA--T-GT-GACA-CGATA-T-GT----ATA-CT-------T-TAT----------C---CA-CTAGTACC-G-GTA--C-TCAA-A--TT---GG---T---TTTGTT--TCAAACGTG-ACCA-CTTA-TAT-T-TATTA-TCAA-ACATTCCAATCAGG-AAT--AAT-CT-CTG-TATAA-T-A--
gi|22 : TCAAAAAAT-CT--TGCG-AGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT------G-GAAA-CAA-A----TTT--AAAA--TA-AAAAA-ATCTCTGG---AGAAA-CAA-A------TGAT-ATT-GCGTTCTTG-GA-GAC--TT--GCCTTGGCC-GATA-TC-AGCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAG-ATTGAAGACA--ATAT-CA-CGAG-A-TGC--CA-GAAGAA-T--AAA--GC-ACA--TTTGTGAAT-CTAAAT-ATTTGCTTtatagggaccatcacattacatgtaaaa
gi|23 : acaT-GAAAGGACGA--G--ATGA-T-GGTTTGCCAATC---AAAAATAATG-ATAACT--GC-ATTTTGGTTT-GAA-A--G-CAA--T--TAGAA------------TAT--TTAAA-AT-GTTGACA-C-ATA-T-------ATA-CTGGT-GTCTGCATAC------TAT---CATCCAGTACC-G--TA--C-TCAA-A--TT----A-----G-TTTG-T--TCAA-CG-G-ACCA-C-TA-TAATC-TA-TA-TTAA-A---TCCAATCAGGTAATTAAAATCT-CTG-TA-AA-T-A--AGACCACCC-ACAATA
gi|24 : CATGATCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-G-TGGCGC-CG---------GGT-AAGCGC---AT---GAAATGAATTTACGCT-AATT-C-AAA--C-AG-TG-CAGAA-TTTGCTTGGTC-ATA--TTTTGAATGTTTAT-GAA-TCA-TTTT-GAGA--AAT-TT--TAT-----C-------AGA--------------AAAC---G--AC----C------TATATT-G-----A-T-Tca
gi|25 : G-GA-TCCAT-GGG--T---------TTAC-TTGAA-CA-GC--TGACTTAAC-C-A--TT--CG-A-TTG-TTT-----TCAAGAA-TTTAGAAT-TAA--TTACAAGGG-AATAGCAAAGTT-TC-T----TT----TTGATTTT--TGT-TTGTAAATA-ACG-----TCT-TTATTGAgagatgaaaaatta
gi|26 : -A-G--TGT-AA-GAG-AG-TTCAT-GGG--TC-CA-TTGTTTAT-TTGAA-CA-GC--TGA-TTAAC-C-T--TT--CG-A-TTG-TTT-----TCAAGAATTTTAGAAA-T-T--TTACAAGGA-AAT-AGCAAGTT-TC-TGA---T----TTG----T--TGT-TT-G-AAT--ATGCAGTATTT-ATATTGAattcgttgattttggcatcgttaagacgtcctctttttc
gi|27 : A-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTTT---CA-C--TAATTTTAGAAT-T-A--TTCCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TTT-TTATTGACAA--AA---AACAAAattcgttgattttggctattgtta
gi|29 : ATTCAAAAATCA----TG-GAAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAA---AA-T----TTT--AAAA-TTC-AAAAT-ATC-TTGG---AGATA-CAA-A------TTAT-ATT-GAGTTCTGG-GA-GAC--ATT-GCCTTGG-A-GATAGTCAAGccaccaccccccaaaggaaaagagagagagagaagagaataactgtta
gi|3 : caaTC--AGTTAAAA-AGTGGCGC-CG---------GGGATAGCGC---CTT--GAAATGAATCTACG-T-AA-TAA-AAA--G-AG-TG-CAGAAATTTGCTTGGTC-ATA--TT-----------T-GAA-TCATTTTT-GAG----AT-AT--GATTCAGAC-------AGA--------------AAAC---T--AC----TG-----TATATT---------T-TATTTAT----AAAA-TGA--CTT-AC--A-TGT-A---T-G-AGAA-CATTT-ATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AGCATCGAA-ATTTC-ATACTT-TATTTTACA-T--C-CG-TC-ATTATTTTACGG-AG-TAGC--CC-G-A-AAGAT-ACGACT-GCAT-CCGA-AGAATTTT-CAT---AT-GT--T---ATT-G-T----------------AA------TGCGGC--------AT-TTAA-GC-TC--AAACA-A-TGTACAT-GC------GGGAATAGTTT----------AGA-TTAA-CAAAGTTT---CTTG-TT--GAT---TATCTCG-TAAAT-A--AT-AATT-A-TCT----TC-TTATGAAAC--GATCAAC-G--AAAG-TGCAG-AACAACT-G-GC-AAAA----------CA-GAGAGCA-C-ACCAAAATG-GTA--ATACACAA-TAT-TAA-CAGTAAACAGCTA--GA-T-AT---TATT--TATTCCA-----T-TA--GC-TGTTGTG---TTA-AGTTGCTGT-GTTTTTGT-ATGT-------GAAAAA-AAAACCCTG---ACAACAATA-TT-AAGACAA-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCG-TTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-ATTTG-TTT---CA-C--GAATTTTAG-AT-T-A--TTTCAAGGG-AAT-GTGAAGTT-TC-TGA--TT----TTG----T--TGTGTT-T-AATA-ATA-----TCTATTATTGAC
gi|3 : AGAA--TTTTAA--TGTT-AG-T-AATTAA-TGCTT-ATTT--ATT-AA-AG-TGGTA-----A-TTCCAAGTGGA--C-AAA-ACACTAAATTTTA-C-AGTTTTTATTGAAAATCAAAAA-CGGAGA--TCTT-GAA--GATC-TGA--TAC-AATTA--CAAAAA---TC--T-TGGAGAAGC-A-CA-TTTGAA--T-TACAAAAATCTT---G--G-GAAA-CAA-AT---TTT--AAAA-TTC--AAAA-ATC-TTGG---AAATA-CAATA------TTAT--T--AAGTTCTTG-GA--AC--ATT-GCCTT-G-A-GAT-GTCAAGCAC-T-TAG---ACAAATG-TATGC-TAA---GA-TTC--AATTAAATAAGAG-ATT------G--ACAT-TACC-AG-AT----GCA-AGAGAT-A--AAA-TGCAATA--TTTGTGAATCCTAAAT-A-TTGCTTcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaattttaatgttagtaattaatgcttatttattaaagtggtaattccaagtggacaaaacactaaattttacagtttttattgaaaatcaaaaacggagatcttgaagatctgatacaattacaaaaatcttggagaagcacatttgaattacaaaaatcttgggaaacaaattttaaaattcaaaaatcttggaaatacaatattattaagttcttggaacattgccttgagatgtcaagcacttagacaaatgtatgctaagattcaattaaataagagattgacattaccagatgcaagagataaaatgcaatatttgtgaatcctaaatattgctt
gi|30 : tcagttaaaaagtggcgccggggatagcgccttgaaatgaatctacgtaataaaaagagtgcagaaatttgcttggtcatatttgaatcatttttgagatatgattcagacagaaaactactgtatattttatttataaaatgacttacatgtatgagaacatttatgtgaaatgtgaacaagattataagcatcgaaatttcatactttattttacatccgtcattattttacggagtagcccgaaagatacgactgcatccgaagaattttcatatgttattgtaatgcggcatttaagctcaaacaatgtacatgcgggaatagtttagattaacaaagtttcttgttgattatctcgtaaataataattatcttcttatgaaacgatcaacgaaagtgcagaacaactggcaaaacagagagcacaccaaaatggtaatacacaatattaacagtaaacagctagatattatttattccattagctgttgtgttaagttgctgtgtttttgtatgtgaaaaaaaaaccctgacaacaatattaagacaagtgtaagagggtccatgggtccatcgttacttgaacagctgatcaaccgttcgatttgtttcacgaattttagattatttcaagggaatgtgaagtttctgattttgttgtgtttaataatatctattattgaccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTCACGTGACCCCGTCTATTACTAGT-AGTTTA-CT--G-TTC--AGTCAAAG---TGGTGC-AG---------GGG-TAGCAC---CT---CAAATGAAT
gi|31 : gtca-GCGACT-GCAT-CCGA-AG---TTT-ATCAAGAT-GT--TAA-ATT-G-T----------------AA------CGC-GC--------
gi|4 : TTAG-T-AATTAA-TGTTT-ATTTTT--C-AA-AG-TGGTACATGTAATTCCAG-TGGA--C-AAA-ACA-TAAATTT---T-AGTTTTTATTGAAAATTAAAAA-CGGAGA--TCTT-AAA--GATC-TGA--TAC-AATTA-----AAAACATC--T-CGGAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCCT---G--GAGAAA-CAA-A----TTT--AAAT-TTCAAAAAA-ATCTTGGG---AGAAA-CAA-A------TTAT-ATT-GAGTTCTTG-GA-GAC--ATT-GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-CAA----A-------------TTC--AATAAAATAAGAGCAT----GACATTACATGTACC-AG-AT----GCACGAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-TTAGAT-A-TTGCTTCATATTGAGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCATATT-TGCAATAT-GTGCACAATGAG-----ATCATGTTT-ATTTT-GAAAG-AC-A--GT-ATG-AT-GGTTT--TGA-C---GAAAA--A---ATAA-T--TT-ATTTTG--TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGAT-GTCT-CATACTACATGTAT---CA--CAGTACC-G-GTA--C-TCAA-A--TTTCCAA---ATGTTTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtcaaagaa
gi|5 : tgGGGTC-CGTGACCCCGTCTCT------TCGGTTTA-CT--GCTTC--AGTTAAAAAGTTGGCGC-CGTCCGAGGCTGGT-TAGCGCAACCT---GAAATGAATCTACGCT-AA-TAA-AAA--G-AGTTG-CAGAATTTTG-TTGGTC-A-A--TTTA---------T-GAA-TCA-TTTTAGAGAACAAT-AT--GAT-----C-------AG---------------AAAC---T--AC----TGTA---TATATTCG-----C-TCTATTTATAAACAAAA-TGA--C-T-------TGT-AAACT-G-AG-A-CATTT-ATGTGAAA--TG-GA-AAGTACAG-T--TATAA-AG-ATCGAA-T-TAC-ATACTT-TATTT-ACA-TCCC-GG-TCTATAA--TTACGG-AGCTAGCCTCC-G-AGAAGAT-ACGAC--GCAT-CCGA-AG---TTT-TTC---GA-GTACT---GCT-G-T----------------AA------TGC-GC--------ATATTAA-GCTTCGAAAACG-A-TGTAAAT-GCATAAGGGGGAATATTTT----------AGA-TTAACCAAAGTTTTCTTTTG-TT--GATC--TA-ATCG-TAAATAA--TTACATTAA-TCTTACGTA-TGATGAAAC--GATCAAC-GGCAAAGTTGCAA-GAAAACT-GCGCCAAAACAGGCGCGGGGG-AAGAGCA-CAACT-AAATG-GTA--A-ATCCAACTA--TAA-CAGT-AACAG-AAT-GA-TAAT---TATT--TATTCC------A-TA--GCTTG-TGTA---TTA-AGTTGCTGT-GTTTGTGT-ATGTTGGAAGAGAAAAACAAA--CCCGCGCACAACCATATTT-AAGAC-A-GACTGT-AA-GAG-GG-TCAAT-AGGCTTCGCAGTCGTTTACTTTGAACCA-GCCTCGATTCAAC-C-GTTTT--CGTATTTG-TTTTCCCACC--GAATTTTAACATCT-A--TTTCAAGGGCAAT-GTCACGTTGTCTTGAGCTT----TTG----TTGTGT-TT-T-AATCAATA-----TCT-TTATTTACcatgtagaatggaacgcacaatatgataaatattgagtatacgtattaggatgtagaatttagagtagcaaatcatggcgtttgaactcctaagcaagaatggctatcaccaaggtgatggcttcatattctctgatttatcgagagggaggcagtgtgttgcaaattgtgctgtattctaaattaattttgaaagatgtgaatttcaaaaatggtcataaag
gi|6 : cgGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCCACGCT-AA-T-A-AAA--G-AGATG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCA-TTTT-GAG---AAT-AT---AT-----CG------AAA--------------AAAC---T--AC----T------TATATT-G-----AGT-TATTTATA---AAAA---A--T-C-ACCTA-TGT-----T-G-AG-ACCATTT-ATGTGAAT--TGTGAGA--CAAGA-T--TAT-ATAG-ATCGAA-A--TC-ATACTT-TATTTAA-A-TC-C-GG-TCTATTATTTTACGG-AG-TAGC--CT-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTTAGTC---ATAGT--TGTAATC-G-CG-A-----------TAAA-------GC-G-----------------GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-ATTT-GT--GATCTATA-ATCG-TAAAC-A--TTAAATTAA-TCT----TGTTTATAA-----GAACAACAG--AAAG-TGCAA-GAAAACT-G-GC-AAAA----------GC-GAGAGCA-C-ACTAAAAC--GTA--A-ATACAA-TA--TAATCAGTAAACAG-TA--GATT-AT---T-TT--TATTCCA-----G-TACTGCTTGTTG-G---AT--AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAAC-ATA-TTCAAGAC-A-G--TGT-TA-GAG-GG-CTCAT-GGG--T--CA-TCGTTCAC-TAGAA-CA-AC--TTA-TCAAC-CGG--TT--C--A-TTG-TTT---CATC--G-ATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--------TTG----T--TGTGTT-T-AAT--A
gi|7 : cg-TTC--AGTCAAAG---TGGCGT-CG---------GGG-TAGCGT---CT---CAAATGAATCTACGCT-AG-T-A-AAAA-G-AG-TG-CAGAAGTT-GCTTGGTC-ATA--TT-----------TTGAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TTA--C-TTAC--A-TGT-A---T-G-AG-A-CATTTC-TGTGAAA--TATGA-A--CAACA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTA-CA-T--CCGG-TCTATT-TTTTACGG-AG-TAGT--CC-A-AGAAGAT-GCGACT-GCAT-CTGA-AG-------------AT-GT--T---ATT-G-T--A-----------T---------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTCTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A-----AATTAA-TCT----TG-TTATGAAAC--GA----------AAG-GGCAA-GGAAACT-G-GCAAAAA----------GG--AGAGCA-C-ACCAAAATG-GCA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TGTT--TATTCCA-------TA--G-TTGTTGTG---ATA-AGTTGCTGTG--TTTTGT-ATGT-------GAAAAA-A------CG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAT-GG-TCCAT-GGA--TC-CA-TTGTTTAC-TTGAG-CA-TC--TGA-TTAAC-C-G--TT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-ATCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTGTTAGTAATTAATG
gi|8 : -TATAC-CAA---TATATC--AATAAAACA-------TGAGCATG--ATAT--ACC-AG-AT----GCATGAAGAA-TGTAAA-TGA-ACA--TTTGTGAAT-TTAAAT-A-TTGCTTCATACTGAGAGAAATA-CAATCAGCGCTATTTCACTCCGGGATTTC--ACTT---ACCATATT-TACAACAT-TTGCACA--GAGAG---ATCATGTTT-ATTTT-GAAAG-AC-A--GT-ATG-AT-GATTT--TGA-A---AAGAA--ATG-ATAA-T--GC-ATTTTG--TTTGAA-A--G-CAAA-T--TAGAA------------TTATTTTAAACAT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATTC------TAT---CA--AAGTACC-G-GTA--C-TTAA-AATTC--CAAT--TTT-TTTG-T--TCAAAAG-G-ACCA-C-CA-TG--G-TA-TA-TCAA-AT--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtttat
gi|9 : GGGTCACG-GACCC-GTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GT-GGCGC-CG---------GG--TAGCGC---CT---GAAATGAATCTACGCTGAA-T-A-AAA--G-AG-TG-CAGAATTT-GCTTGGTC-ATA--TT-----------T-TAA--AA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-GTATATA-T-TATTTA-A---AA-----A--C-T-GC--ATTGT-T---T-G-AG-A-CATTT-ATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTT-ACA-T--C-GG-TCTATTA-TTTACGG-AG-TAGC--CCGG-AGAAG-T-ACGACT-GCATGCCAA-AG---TTT-TTC---AT-GT--T---ATT-G-T--------------T--A------TGC-GC--------AT-TAAA-GC-TCG-AAACGAA-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGGTTTCTTTTGTTT--GAT-------TC---------------ATTAA-TCT----T--TAATGAAAC--GATCAAC-G--AAAT-TGCAA-GGAAACT-G-GCAAAAA-----------G-GAGAGCA-C-ACTAAAGTG-CTAATA-ATA-AT-TA--TAC-AAGTAATCAG-TT--GA-T-AT---TATT--TATTCC------A-TA--GC-TGTTGTG---ATA-AATTGCTGTGTTTTGTTT-ATGT-------GAAAAA-AAA--catgtaaaatggaacccacaatataataaatattgagtatacatgcatctttaggatataggatttagaattgcaaaacacggtatttaaactactaagcaagactgactatcatcaagtaaatgatgatttgtcgagagggaggcaattgtgctgtattcttaattaaagctcattacgaaaggtgtgaattttaaaaatgatctaaacatga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): TGTGTATTAAAAAATTGTTATATGTAATTACAAAAAGATTAAATCATCTTTGCTGCATTGTGAGGACATTACATGTACTGTAAGGATCGTAAAGTCACATTGCTACACATACATAAAACTGTACGTAGAACTGTACATATT
Unaligned ( gi|32 ): CTTTAGATATTAGCTGAAAACTCATGGGTTAATCCCAAATTAAATC
Unaligned ( gi|33 ): CAGGGGCGGATCAGGAATTCTGGTGGGGGGAGGGGGGC
Unaligned ( gi|34 ): AAATGACTGACATTTCAAGCAACTGTTTACTA
Alignments
lowQualScore : 111111 111 111111111 11 1 11 1111111111111 1111111111111 22222222222222 222222 111 22 11 1 222 666666666666666666666666 11111111 111111 1111111111 2222222 11 22222222222222 11 1 11 22222222 11 2222222 1 222222 11 11 11 11111 11 222 777777777777777777777777777777777777777777777777777777777777777777777777777777 111 1 1 222222 1 1111111 111 11 111 1 33333333 1111 111 11 111111 111 1 111111 4444444444444444444444444444444 1111 11 1 11 1 1 55555555555555 11 111 1 1 1 33333 111 1 22222 11 2 222222222222 1111 222222 111 11 6666666666666 1 1111
lowQualScore : 1 000000 7 3 55 3 44 444 3 222222222 3 555 777 3 3 9 3 33 3 6 3 1 9 3 33 9999999999999 6 3 3 44 3 44 6666666666666 11111111111111 555 44 6666 000000 6 77777 3 3 555 555 44 555 44 3 66666 3 3 3 3 44 44 3 44 3 44 3 3 3 6 6 3 3 88 6 77 3 6 77 3 3 44 3 3 3 3 3 6 555 55 111 3 44 999 3 3 999999999999999999999999 3 11111111 3 3 3 3 3 3 3 000000 5555555555 3 3 7 3 55 666 3 3 4444444 3 7777 3 33 8 55 8 4 4 4 4 55555555555555 4 4 1 4 66 4 4 00 3 4 00 4 4 777 66 55555555 66 55 777 4 33 4 2222222 4 66 888 1 5 5 1 5 5 66 5 5 4 4 4 66 88 4 4 4 4 55 8 4 4 55 55 8 8 2 000000 00 3 3 00 3 3 3 7 55 7777 8888888 7 3 7 22 00000 4 11 000 1 888888888888888888888888888888888888888888888888888888888888888888888888888888 777 11 0 6 5 99 6 6 6 000000 6 3 9999999 6 99 6 6 6 999 6 3 7 66 6 6 000 6 99 6 5 0 33333333 4 5 5 5 5 5 0 888 66 77 5 5 5555 66 5 3 777 6 888 5 5 0 333 5 11 5 5 5 111111 222 2 3 5 1 333333 5 1 5 888 6 66 888 5 0000000000000000000000000000000 5 0000 00 5 77 5 5 1 1 33 0 3 0 88888888888888 33 7 777 2 0 0 0 6 55555 8 6 6 000 99 6 1 6 99 11111 55 6 5 77 5 2 5 5 77 5 55 77 999999999999 77 5 5 5 5 5 5 5 2222 5 0 5 3 5 1 444444 000 77 0 5 5 77 5 5 77 1111111111111 0 66 5 5 5 5 5 2222 5 5 5 66 3 33 5 5 5 5 5 5 66 77 5
lowQualScore : . ...... . . .. . .. ... . ......... . ... ... . . . . .. . . . . . . .. ............. . . . .. . .. ............. .............. ... .. .... ...... . ..... . . ... ... .. ... .. . ..... . . . . .. .. . .. . .. . . . . . . . .. . .. . . .. . . .. . . . . . . ... .. ... . .. ... . . ........................ . ........ . . . . . . . ...... .......... . . . . .. ... . . ....... . .... . .. . .. . . . . . .............. . . . . .. . . .. . . .. . . ... .. ........ .. .. ... . .. . ....... . .. ... . . . . . . .. . . . . . .. .. . . . . .. . . . .. .. . . . ...... .. . . .. . . . . .. .... ....... . . . .. ..... . .. ... . .............................................................................. ... .. . . . .. . . . ...... . . ....... . .. . . . ... . . . .. . . ... . .. . . . ........ . . . . . . . ... .. .. . . .... .. . . ... . ... . . . ... . .. . . . ...... ... . . . . ...... . . . ... . .. ... . ............................... . .... .. . .. . . . . .. . . . .............. .. . ... . . . . . ..... . . . ... .. . . . .. ..... .. . . .. . . . . .. . .. .. ............ .. . . . . . . . .... . . . . . . ...... ... .. . . . .. . . .. ............. . .. . . . . . .... . . . .. . .. . . . . . . .. .. .
lowQualScore : 4 555555 3 6 00 3 22 222 1 333333333 1 000 999 1 1 2 1 55 1 2 1 1 8 1 55 1111111111111 2 1 1 22 1 22 5555555555555 22222222222222 444 22 5555 444444 2 77777 1 1 888 111 66 666 66 3 44444 3 3 3 3 99 66 3 66 3 66 3 3 3 7 7 3 3 88 7 99 3 7 88 3 3 66 3 3 1 1 1 2 444 22 555 1 22 666 1 1 222222222222222222222222 1 22222222 3 1 1 1 1 3 3 555555 9999999999 6 6 3 6 00 444 6 6 8888888 6 7777 6 55 0 55 0 0 4 4 6 22222222222222 4 4 9 4 11 4 4 66 3 4 66 4 4 888 11 44444444 11 44 888 4 33 4 2222222 4 11 888 4 7 7 7 0 0 99 0 0 4 4 4 11 33 4 4 0 0 55 0 0 0 55 55 0 0 0 444444 00 6 6 00 6 6 6 3 00 7777 2222222 3 6 3 33 00000 0 00 000 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 000 88 6 0 5 22 7 7 7 000000 7 3 3333333 7 22 7 7 7 222 7 2 3 55 7 7 222 7 22 7 5 4 00000000 5 0 0 0 0 0 4 888 99 55 0 0 6666 99 0 2 111 2 888 0 0 4 888 0 99 0 0 0 555555 000 5 2 7 4 444444 0 4 0 888 2 99 666 0 9999999999999999999999999999999 7 4444 77 7 99 7 7 4 0 22 0 2 0 22222222222222 88 0 555 5 5 0 0 0 66666 0 7 7 888 22 7 7 7 22 88888 88 7 7 99 7 4 0 7 99 7 99 99 333333333333 99 7 7 7 7 7 7 7 1111 7 7 7 0 7 7 333333 000 11 7 7 7 99 7 7 99 0000000000000 0 99 0 0 0 0 0 8888 0 0 0 99 2 88 0 0 0 0 0 0 99 99 7
consensus : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--C-T-AC--A-TGT-A---T-G-AG-A-CATTTCATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTAACA-T--C-GG-TCTATTATTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-G-T--A-----------TAAA------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAA----------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-----A-TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGAACAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG--TAATT-AA-TGCTT-ATTTTTATT-AA-AG-TGGTA-----AATTCCAA-TGGA--C-AAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATCAAAAAACGGAGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATACC--TGCGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTCAAAAA-A-TCTTTGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAAGACG--ACAT-TACC-GA-G-ATTG-CGCA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGNGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TGAAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--C-TCAA-A--TT--CAA---TTG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
Reference ( family-1008 ) : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--C-T-AC--A-TGT-A---T-G-AG-A-CATTTCATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTAACA-T--C-GG-TCTATTATTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-G-T--A-----------TAAA------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAA----------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-----A-TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGAACAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG--TAATT-AA-TGCTT-ATTTTTATT-AA-AG-TGGTA-----AATTCCAA-TGGA--C-AAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATCAAAAAACGGAGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATACC--TGCGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTCAAAAA-A-TCTTTGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACNTN---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAAGACG--ACAT-TACC-GA-G-ATTG-CGCA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGNGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TGAAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-ATTTTGTTTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--C-TCAA-A--TT--CAA---TTG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
gi|1 : GGGTCACGTGACCC-GTCTAT------T-GGTTAA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTCTATA--CT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GA------C-------GAA--------------AAAC---T--AC----T------ATTATT-G-----A-T-TATTTATA---AAAA-TCA--C-T-A---A-TGT-A-----G-AG-A-CCTTTTATGTGAAA--TGTGA-A--GAAGA-T--TAT-A-AG-ATCGAA-A--TC-ATACTTATATTTAACA-T--C-GG-TCATTTATTTTCCGG-AG-TAGC--CT-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTT-TTC---AT-GT--T---ATTCG-TCGA-----------TAAA------TGC-G---------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATA-ATT----------AGA-TTAA-CAAAGTTTTC-TTTG-TT--GATC--TA-ATCG-TAAAC-AGTTTAAATTAA-TCT----TG-TTATGAAACA-GATCAACTG--AAAG-TGCAA-GAAAACT-G-GCAAAAC----------GGAGAGAGCA-C-ACTAAAATGCGTA--A-ATACAA-TA--TAATCAGTAAACAG-TA--GA-T-TT---TATTTATATTCCA-----AGTA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA--C-AAGAC-ACG--TGT-AA-GAG-GG-T-CAT-GGG--TC-CA-TCGTTCAC-TTGAA-CA-AC--TTA-TCAAC-C-G--CTTACG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--TT----TTG-------TGT-TT-T-AAT--ATA-----TCT-TTATTACCAA--AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATATAGACTGTTTAGTTTAATT-AA-TTTTTCATTGTTA-T-AA-AGTTGGCA-----AATTCCAA-TGGA--C-AAACACA-TAAATTT-ATC-AG-TTTGATTGAAAATCAAAAAACGAAAAGATTTT-GAA--GATC-TG---TAC-AATTATTCAAAAAATACCTGTGTGGAGAAGC-A-CA--TTGAAATT-TACAAAATTCTT---ATTG-GAAA-CAA-A----TTT--AAAA-TTCAAACA-A-TCTT--G---AGAAA-C-AATTTA---T-ATT--GAAGTTCTTG-GACGAATTG---GCCTTGG-AGGATAGTCAAGCAA-T-TAG---A-AAATGTTAT-C-TAA---GA-TTC--AATTAAA-AAGAG-ATTGGA--------AT-TACC-GA-GCATTGCCACA-GAAGAA-C--AAA-TTC-ACAACTTTGTGAAT-CTAAAT-A-TTGCTTCATATGCCGA-AAATTCCAA-CAGCGTT--------------TTTT--A-TT---A-CGTATTATGCAATATAGTGCACATTGAGAATCTATCATGTTT-ATTTT-GAAAG-AC---GTTAA-TGTAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-A--TTG---TGAACA--GTCAAG-TGGTAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATC-TCGTAGCGATATCTGGTGGTTT-TATACAA----TAT---CA-CCAGTACCTGCGTACCC-TCAAGA--T----AA---CTG-TTTGATAATCTAAAG-G-ACAA-C-TAGTA--T-TA-TA-TTAA-AC--T-CAAT-AGG-AAGAACAA-CA-C------AA-T-GATAAACCA--CAACAATAAT
gi|10 : GGGTCACGTGACCCCGTCTAT------T-GGTTTATCT--G-TTC--AGTTAAAG---TGGCGC------------GGG-TAGCGC----T---GATATGA-TCTACGCT-AA-T-A-AAAAAG-AG-TGGCAGAATTT-GCT-GGTC-ATA--TT-----------T-GAAGTCA-GTTT-GAGA--AA--AT--GAT-----C-------AGAG-------------AAAC---T--AC----T------TATACTCG-----A-T-GATTTATA---ATAA-AGA--C-TTGC--A-TGT-A---TCGTAG-A-TATTT-ATGTGAAA--TGTGA----CAAGAAT--TA--A-AG-CTCGAATA-TTCTATACTT--ATTTA-CA-T--CCGG-GCTATTATTT-ACGGTAG-TCAT--CC-G-AGAAGATTACGACTTGC----TGA-AG---TTT-TTC---AG-GT--T---ATT-GGT--A-----------TG--------TCC-GC--------AT-TTAA-GC-TCG-AAACG-AGTGTAA-T-GC------GG-AATATTTT----------AGA-TTAA-CAAAGTTTTC-TTTG-TT--G-------------------A--TTGAATTAA-TCT----TG-TTA-GAAACA-GATCAAC-G---AAG-TCCAA-GAAAACT-G-GCAAAAA-----------G-GAGAGCA---ACT-AAATG-GT---A-ATATAT-TA--T-A-CAGTAAACAG-TT--GA-T-ATTAATATT--TATCC-------A-TA--GGCTGTTGT----ATATAGTTGCTGGTGTTTTTGT-ATGT-------GAAAAA-AAA--CCCC---ACt
gi|11 : cgTCAAAAAAT-CT--TGCG-AGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G--AAA-CAA-A----TTT--AAAA-T-AAAAAA-A-TCTCTGG---AGAAA-C-AAATGA---T-ATT--G-CGTTCTTG-GA-GAC-TT---GCCTTGGCC-GATA-TC-AGCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAG-ATTGAAGACA--ATAT-CA-C-GA-G-A-TG-C-CA-GAAGAA-T--AAA--GC-ACA--TTTGTGAAT-CTAAAT-ATTTGCTTCATATTGCG--AAATT-C-A-CAGCGTT-------------ATTTTTAATTTTAAACC--AAT-TGCAATAT-GTGCACATTGAG-----ATCATTGAT-ATTTT-GAAAG-ACA--GT--A-TGAAT-CGGTT--TGA-CA--AAAAA--ATGAACAG-T--GC-ATTTTG-TTTGAA-A--G-CAAATT--TAGAA------------TAA--TTAAA-ATAGT-G-CACC-ATA-T-GT----ATA-CTCGT-GT-T-CATAC------TCT---CA--CAGTA-C-G-GTA--CTTCAA-A--T---------TGG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TATTTAA-AC--TCCAATCAGGT--TTAAAT-CT-CTG-TA-AA-T-A--AGACCA--C-ACAA
gi|12 : cgacacacaGGGCCACGTGACGCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GT-GGCGC-CA---------GGG-TAGCGC---CT---TAAATGAATCTACGCT-AA-T-A-AAAA-G-AG-TG-CAGAACTT-GCTTAGCC-ATA--TT-----------TTGAA-TCA-TTTT-GAGG--AATGATAAGAT-----ATTTTAAAAAA--------------AAACAAAC--AC----CA-----TATATT-G-----A-T-TATTTATA---AAAA-TTA--C-TTAC--A-TGT-A---T-T-AG-A-TATTTC-TGACAAA--TATAA-A--CAAGA-C--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTACTT-C--C-GG-TATAT-GTTTTACGG-AG-AAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---AGT-G-T--AACGCGCT----CAAAGAAAGGTAA-AC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATCTTAAACTAACAAAGA-TTAA-CAAAGATTGT-CTTA-TT--GATC--TA-TTCG-TAAAC------AAATTAA-TCT----TG-TTATGAAAC--GATGAAC-G--AAAG-TGCGT-GAAAACatacatgtt
gi|13 : cgGAAGGGAAGAATTTAAACTGTT-AG--TAATTTAACTGCTT-AATTCTATTCAA-AG-TGGTA-----ATCTCCAA-TGGAACC-AAA-ACA-TAATTTT-A-CCAGTTTTTACTGAAATGCACAAAACCG-GAGATCTTTGAA--GATC-TGA--TACTAATCA---AAAAAAT-CC--T-TGGAGAAGCCA-CAATTTGAAA-T-TACAAAA-TCTT---G--G-GAAAACAATA----TTTTAAAAA-TTCAAAAA---TCTTTGG---AGAAATC-AAATTA---TTATTT-G-AGTTGCTGTGA-GACATTTGTGCCTTGG-A-GATAGTCAAGCAC-T-TAGACAA-GAATG-TCTGCTTAAAATGATTTCAGAGTTAAAAAAGAC-ATTGAgga
gi|14 : agacagagagagagagaGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCAC-CA---------GGG-TAGCGC---CT---CAAATGAATCTACGCT-AA-T-ATAAA--A-CG-TG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCA-TTTT-GAGA--TAT-AT--GAT-----C-------AGA--------------AAAC---TCAAT----TCAATTCTATACT-G-----A-T-TATTTATA---AAAA-TGA--CTT-AC--A-TGT-A---T-G-AG-A-CATTTC-TGTGAAA--TAATA-A--CAAAA-T--TAT-A-AG-ATCGAA-ATTTC-ATACTT-TATTT-ACATT--C-GG-TCCATT-TTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---ATT-G-TA-A-----------TTAA------TGC-GCATTTAATGAT-TTAA-GC-TCG-GAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGATTTC-CTTG-TT--GACC--TA-ATCG-TAAAC------AAATTAA-TCT----GG-TTAcacttaaacaagatgcaagtatagaattaacatgccacatctttattgcttccaggtcagaatccaggaaatttctggttagtggggggggggggggggc
gi|15 : cgg-GC-TTG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTT-TT--GATC--TA-ATTG-TAAAC-A-----AATTAA-TCT----TG-TTATAAAAC--GATCAAC-G--AAAG-TTCAA-GAAAACT-C-GCAAAAA----------GG--AGATCA-C-ACCAAAATG-GTA--A-ATCCAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---AATT--TATTCCATACATG-TA--GCT-GTTGTG---ATA-AGTTGCTGTG-TTTTTGT-ATGT-------GAAAAA-AAA--CCCA---ACGATATTA-TT-ATTAC-A-G--TGT-AA-GAG-GG-TCCAT-------------TGTTTAA-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AA---AACAAAACAA
gi|16 : -T--GC-ATTTTGTTT-GAA-A--G-CAAA-T--TAGAATACATGTACATGTAA--TTAAA-AT-GT-GACA-C-ATACT-GT----ATA-CTGGT-GTCT-CATAC------TATCCCCA-CTAGTAAC-C-GTA--C-TCAA-A--TTTCCAAATGTTC-TTTG-T--TCAAACG-GAACCACC-TA-TA--T-TA-TA-TTAA-AC--TCCAATCA-CTATTAAAAA-CT-CTGATA-AA-A-A--AACCCA--C-ACAaacaaaaaaggagagagagagaagagattgactgtt
gi|17 : -TTTG-T--TTAAACG-T-ACCC-C-TA-TA--TGTA-TA---AATAC--TC-AATCAGGTAATT-AAA-CTGCTG-TA-AAGTAA--AAACCA--T-tgcatggtaaaatggaacccacaataataataaatatatattaggatgtagaattagatactagcaaatcatggcgttaaactcctttagaagcaaagactcactatcaccaagtgatggactttcatattctttcttgaattgttggcaaattgtgctatattcttaattaaattcgttatgaaagatgtgaatttcaaaaatgatctaaa
gi|18 : ccaaagtAGCGC---CT---GAAATGAATGTACGCT-AA-T-A-AAA--GGAG-TG-CAGAATTT-GCTTAGTC-ATA--TT-----------TTGAA-CCA-TTTT-GAGA--AAT-----GAT-----C-------AGATATTTCAATGAACAAAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAAATTA--C-TTAC--A-AGT-A---T-T-AG-A-TATTTC-TGACAAA--TGTGA-A--CAAGA-C--TTT-A-AG-ATCGAA-A-TTC-ATACTT-TATTT-ACATT--C-GG-TCTATTA-TTTACAG-AG-TAGC--CC-G-AGAAGAC-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---ATT-G-T--AACGCGCTCTTGTAAAGAAAAGTGA-AC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-acatgtacatcaatagaacccacaaataaataatatattggaatgatacatattaggatgtacgaaatttagaggagcaagcaggcgtttaacctctttagagaaggcaagactgcactatcaccataggtgataggacttcgatactcgtcattgtcgatagggaggtagttgtgttctgcagaaattgcgctaaatagtaatatcttacattaaagtcacatatgatagatgtgaatttcaaaaatggtctaaaatgactt
gi|19 : GGGTCACGTGACCCAGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCGG-AG---------GGG-TAGCGC---CC---GAAATGAATCTACACT-AA-TAA-AAA--G-AG-TG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCG-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--CTT-AC--A-TGT-A---T-G-AG-A-CATTTC-TGTGA--------A-A--CAAGA-TAATAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTT-ACA-T--CTGGTTCTATT-TTTTACTG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GTAT-CCGA-AG---TTT-GAC---A--------------------------------AGA------TG---------------TTAA-GC-TAG-AAACG-
gi|2 : acgGGGTCACGTGACCCCGTCTAT------TTGGTTTA-CTTGG-CTCTCAGTTAAA--GTTGGCGCGCG---------GGG-TAGCGC---CTTAAGAAATGAATCTACGCT-AA-T-A-AAAA-G-AG-TG-CAGAATTCTG-TTGGTC-ATAGTTT-----------T-GAAATCA-TTTT-GAGA--AAT-AT--GAT-------------AGA--------------AAAC---T--ACCTTAT------TAT-TT-G-----A-T-TATT-ATA---AAAA-TGAACT-T-AC--A-TGTCA---T-G-AA-A-TATGTTATGTGGAAATTGTGA-A--CAAGA-T--TAT-A-AG-ATTGAACA-TTC-ATACTT-TATTTA-CA-T--CCGGCTCTATTATTTTACGG-AG-TAGC--CC-GCAGAAGAT-ACGACT-GCAT-C-GA-AG---TTT-TTC---AT-GT--T---ATT-G-T--A--------------A------TGC-GC--------AT-TTAAAGC-TCG-AAACG-A-TGTAAATTGC------GGGGAAATTTT----------AGAATTAA-CAAAGTTGTC-TTTG-TTTGAATC--TA-ATCGCTAAAT-A--TTAAATTAAATCT----TG-TTATGAAACACGATCAAC-G--AAAGCTGCAATGAAAACTTG-GCAAAC-----------GG-GAGAGCAGC-ACTAAAATG-GTA--A--TACAA-TAGATAAACAGTAAACAG-TATAGA-T-AT---TATT---ATTTCC-----A-TA--GCT-GTTATGTTGGTA-AGTTGC-GTG-TTTTTGTCATGTTGA----AAAAAA-AAA--CACG---ACAACAATA-TT-A-GAC-A-G--TGTTAACGAGCGGCTCCATAGGG--TC-CA-TCGTTTAC-TTGAA-CAAGC--TGA-TCAAAAC-G--TT--CGCA-ATG-TTC---TCCC--GAATTTTAGAAC-T-A--TTTCAAGGG-AAT-GTCAAGTT-TCTTGA--TTTTGCTTG----T--TGT-TT-TGAAT--ATA-----TCT-TT-----------ATGGACCAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAC--ATT--AACTG-TTAG--TAATT-TA-TGCTT-ATTTTATTT-AACAGTTGGT------AATTCCAA-TGGA--CAAAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATTCAAAAACG--GAGATATT-GAAAGAATCTTGACTTAC-AACT-TTCAAAAAAT--C--TTTGGAGAAGC-ACCA-TTTGAAA-TCTACAAAAATCTTGGAG--G-GAAA-CAC-ATTGGTTT--AAAATTTCAAAAACA-TCTTTGGAGAAGAAA-CAAAATTAATTT-ATTTGG-AGCTGATT-GA-GACATG---GCCTTGG-A-GATAGTCAAGCACTT-TAG---ACAAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATT-----TG--ACAT-TACCAGATG-ATT---TAA-GAAGAATT--AAATTGC-ACA--TTTGTGAAT-C--AATAA-TTGC
gi|20 : acg--GAATTTTAGAAT-T-A--TTACAAGGG-AAT-ATCAGGTT-TC-TGA--TT----TTG----T--TGT-AT-T-AAT--ATG-----TC--TAATTGA
gi|20 : AGAGAA-----TAA-CTGAT-AG--TACTC-AA-TGTTT-ATTTTT--T-GA-AA-TGGTA-----A-CTCCAG-TGGA--C-AAA-ACA-TA--TTTGA-C-A-TTTTTATTGAAAATT-AAAAACG--GAGATCTT-GAA--------AA--TAC-AATattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatagagaataactgatagtactcaatgtttattttttgaaatggtaactccagtggacaaaacatatttgacatttttattgaaaattaaaaacggagatcttgaaaatacaat
gi|21 : gaattttagaattattacaagggaatatcaggtttctgattttgttgtattaatatgtctaattgaattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatTTGAGA----TCTATGTTTTATTTTTGAAAG-ACAAGGT--AGTGAATTGGTTT--TGA-TCTAAAAAAT-ATG-ATAA-TTGGCGATTTTGTTT-GAA-ATTG-CAAA-T----GAA------------TAA--TCAAA--T-GT-GACA-CGATA-T-GT----ATA-CT-------T-TAT----------C---CA-CTAGTACC-G-GTA--C-TCAA-A--TT---GG---T---TTTGTT--TCAAACGTG-ACCA-CTTA-TAT-T-TATTA-TCAA-ACATTCCAATCAGG-AAT--AAT-CT-CTG-TATAA-T-A--
gi|22 : TCAAAAAAT-CT--TGCG-AGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G--AAA-CAA-A----TTT--AAAA-T-AAAAAA-A-TCTCTGG---AGAAA-C-AAATGA---T-ATT--G-CGTTCTTG-GA-GAC-TT---GCCTTGGCC-GATA-TC-AGCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAG-ATTGAAGACA--ATAT-CA-C-GA-G-A-TG-C-CA-GAAGAA-T--AAA--GC-ACA--TTTGTGAAT-CTAAAT-ATTTGCTTtatagggaccatcacattacatgtaaaa
gi|23 : acaT-GAAAGGACG--AG--A-TGA-T-GGTTTGCCAATC---AAAAATAATG-ATAACT--GC-ATTTTGGTTTGAA-A--G-CAA--T--TAGAA------------TAT--TTAAA-AT-GTTGACA-C-ATA-T-------ATA-CTGGT-GTCTGCATAC------TAT---CATCCAGTACC-G--TA--C-TCAA-A--TT----A-----G-TTTG-T--TCAA-CG-G-ACCA-C-TA-TAATC-TA-TA-TTAA-A---TCCAATCAGGTAATTAAAATCT-CTG-TA-AA-T-A--AGACCACCC-ACAATA
gi|24 : CATGATCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-G-TGGCGC-CG---------GGT-AAGCGC---AT---GAAATGAATTTACGCT-AATT-C-AAA--C-AG-TG-CAGAA-TTTGCTTGGTC-ATA--TTTTGAATGTTTAT-GAA-TCA-TTTT-GAGA--AAT-TT--TAT-----C-------AGA--------------AAAC---G--AC----C------TATATT-G-----A-T-Tca
gi|25 : G-GA-TCCAT-GGG--T---------TTAC-TTGAA-CA-GC--TGACTTAAC-C-A--TT--CG-A-TTG-TTT-----TCAAGAA-TTTAGAAT-TAA--TTACAAGGG-AATAGCAAAGTT-TC-T----TT----TTGATTTT--TGT-TTGTAAATA-ACG-----TCT-TTATTGAgagatgaaaaatta
gi|26 : -A-G--TGT-AA-GAG-AG-TTCAT-GGG--TC-CA-TTGTTTAT-TTGAA-CA-GC--TGA-TTAAC-C-T--TT--CG-A-TTG-TTT-----TCAAGAATTTTAGAAA-T-T--TTACAAGGA-AAT-AGCAAGTT-TC-TGA---T----TTG----T--TGT-TT-G-AAT--ATGCAGTATTT-ATATTGAattcgttgattttggcatcgttaagacgtcctctttttc
gi|27 : A-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTTT---CA-C--TAATTTTAGAAT-T-A--TTCCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TTT-TTATTGACAA--AA---AACAAAattcgttgattttggctattgtta
gi|29 : ATTCAAAAATCA----TG-GAAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA---A-T----TTT--AAAA-TTCAAAAT-A-TCTT-GG---AGATA-C-AAATTA---T-ATT--G-AGTTCTGG-GA-GACATT---GCCTTGG-A-GATAGTCAAGccaccaccccccaaaggaaaagagagagagagaagagaataactgtta
gi|3 : caaTC--AGTTAAAA-AGTGGCGC-CG---------GGGATAGCGC---CTT--GAAATGAATCTACG-T-AA-TAA-AAA--G-AG-TG-CAGAAATTTGCTTGGTC-ATA--TT-----------T-GAA-TCATTTTT-GAG----AT-AT--GATTCAGAC-------AGA--------------AAAC---T--AC----TG-----TATATT---------T-TATTTAT----AAAA-TGA--CTT-AC--A-TGT-A---T-G-AGAA-CATTT-ATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AGCATCGAA-ATTTC-ATACTT-TATTTTACA-T--C-CG-TC-ATTATTTTACGG-AG-TAGC--CC-G-A-AAGAT-ACGACT-GCAT-CCGA-AGAATTTT-CAT---AT-GT--T---ATT-G-T----------------AA------TGCGGC--------AT-TTAA-GC-TC--AAACA-A-TGTACAT-GC------GGGAATAGTTT----------AGA-TTAA-CAAAGTTT---CTTG-TT--GAT---TATCTCG-TAAAT-A--AT-AATT-A-TCT----TC-TTATGAAAC--GATCAAC-G--AAAG-TGCAG-AACAACT-G-GC-AAAA----------CA-GAGAGCA-C-ACCAAAATG-GTA--ATACACAA-TAT-TAA-CAGTAAACAGCTA--GA-T-AT---TATT--TATTCCA-----T-TA--GC-TGTTGTG---TTA-AGTTGCTGT-GTTTTTGT-ATGT-------GAAAAA-AAAACCCTG---ACAACAATA-TT-AAGACAA-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCG-TTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-ATTTG-TTT---CA-C--GAATTTTAG-AT-T-A--TTTCAAGGG-AAT-GTGAAGTT-TC-TGA--TT----TTG----T--TGTGTT-T-AATA-ATA-----TCTATTATTGAC
gi|3 : AGAA--TTTTAA--TGTT-AG--TAATT-AA-TGCTT-ATTT--ATT-AA-AG-TGGTA-----A-TTCCAAGTGGA--C-AAA-ACACTAAATTTTA-C-AGTTTTTATTGAAAATCAAAAA-CGGAGA--TCTT-GAA--GATC-TGA--TAC-AATTA--CAAAAA---TC--T-TGGAGAAGC-A-CA-TTTGAA--T-TACAAAAATCTT---G--G-GAAA-CAA-AT---TTT--AAAA-TTC-AAAA-A-TC-TTGG---AAATA-C-AA--TAT--T-ATT--A-AGTTCTTG-GA--ACATT---GCCTT-G-A-GAT-GTCAAGCAC-T-TAG---ACAAATG-TATGC-TAA---GA-TTC--AATTAAATAAGAG-ATT------G--ACAT-TACC--A-G-AT----GCA-AGAGAT-A--AAA-TGCAATA--TTTGTGAATCCTAAAT-A-TTGCTTcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaattttaatgttagtaattaatgcttatttattaaagtggtaattccaagtggacaaaacactaaattttacagtttttattgaaaatcaaaaacggagatcttgaagatctgatacaattacaaaaatcttggagaagcacatttgaattacaaaaatcttgggaaacaaattttaaaattcaaaaatcttggaaatacaatattattaagttcttggaacattgccttgagatgtcaagcacttagacaaatgtatgctaagattcaattaaataagagattgacattaccagatgcaagagataaaatgcaatatttgtgaatcctaaatattgctt
gi|30 : tcagttaaaaagtggcgccggggatagcgccttgaaatgaatctacgtaataaaaagagtgcagaaatttgcttggtcatatttgaatcatttttgagatatgattcagacagaaaactactgtatattttatttataaaatgacttacatgtatgagaacatttatgtgaaatgtgaacaagattataagcatcgaaatttcatactttattttacatccgtcattattttacggagtagcccgaaagatacgactgcatccgaagaattttcatatgttattgtaatgcggcatttaagctcaaacaatgtacatgcgggaatagtttagattaacaaagtttcttgttgattatctcgtaaataataattatcttcttatgaaacgatcaacgaaagtgcagaacaactggcaaaacagagagcacaccaaaatggtaatacacaatattaacagtaaacagctagatattatttattccattagctgttgtgttaagttgctgtgtttttgtatgtgaaaaaaaaaccctgacaacaatattaagacaagtgtaagagggtccatgggtccatcgttacttgaacagctgatcaaccgttcgatttgtttcacgaattttagattatttcaagggaatgtgaagtttctgattttgttgtgtttaataatatctattattgaccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTCACGTGACCCCGTCTATTACTAGT-AGTTTA-CT--G-TTC--AGTCAAAG---TGGTGC-AG---------GGG-TAGCAC---CT---CAAATGAAT
gi|31 : gtca-GCGACT-GCAT-CCGA-AG---TTT-ATCAAGAT-GT--TAA-ATT-G-T----------------AA------CGC-GC--------
gi|4 : TTAG--TAATT-AA-TGTTT-ATTTTT--C-AA-AG-TGGTACATGTAATTCCAG-TGGA--C-AAA-ACA-TAAATTT---T-AGTTTTTATTGAAAATTAAAAA-CGGAGA--TCTT-AAA--GATC-TGA--TAC-AATTA-----AAAACATC--T-CGGAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCCT---G--GAGAAA-CAA-A----TTT--AAAT-TTCAAAAA-AATCTTGGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-CAA----A-------------TTC--AATAAAATAAGAGCAT----GACATTACATGTACC--A-G-A-TG-CAC--GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-TTAGAT-A-TTGCTTCATATTGAGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCATATT-TGCAATAT-GTGCACAATGAG-----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TG-AT-GGTTT--TGA-C---GAAAA--A---ATAA-T--TT-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGAT-GTCT-CATACTACATGTAT---CA--CAGTACC-G-GTA--C-TCAA-A--TTTCCAA---ATGTTTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtcaaagaa
gi|5 : tgGGGTC-CGTGACCCCGTCTCT------TCGGTTTA-CT--GCTTC--AGTTAAAAAGTTGGCGC-CGTCCGAGGCTGGT-TAGCGCAACCT---GAAATGAATCTACGCT-AA-TAA-AAA--G-AGTTG-CAGAATTTTG-TTGGTC-A-A--TTTA---------T-GAA-TCA-TTTTAGAGAACAAT-AT--GAT-----C-------AG---------------AAAC---T--AC----TGTA---TATATTCG-----C-TCTATTTATAAACAAAA-TGA--C-T-------TGT-AAACT-G-AG-A-CATTT-ATGTGAAA--TG-GA-AAGTACAG-T--TATAA-AG-ATCGAA-T-TAC-ATACTT-TATTT-ACA-TCCC-GG-TCTATAA--TTACGG-AGCTAGCCTCC-G-AGAAGAT-ACGAC--GCAT-CCGA-AG---TTT-TTC---GA-GTACT---GCT-G-T----------------AA------TGC-GC--------ATATTAA-GCTTCGAAAACG-A-TGTAAAT-GCATAAGGGGGAATATTTT----------AGA-TTAACCAAAGTTTTCTTTTG-TT--GATC--TA-ATCG-TAAATAA--TTACATTAA-TCTTACGTA-TGATGAAAC--GATCAAC-GGCAAAGTTGCAA-GAAAACT-GCGCCAAAACAGGCGCGGGGG-AAGAGCA-CAACT-AAATG-GTA--A-ATCCAACTA--TAA-CAGT-AACAG-AAT-GA-TAAT---TATT--TATTCC------A-TA--GCTTG-TGTA---TTA-AGTTGCTGT-GTTTGTGT-ATGTTGGAAGAGAAAAACAAA--CCCGCGCACAACCATATTT-AAGAC-A-GACTGT-AA-GAG-GG-TCAAT-AGGCTTCGCAGTCGTTTACTTTGAACCA-GCCTCGATTCAAC-C-GTTTT--CGTATTTG-TTTTCCCACC--GAATTTTAACATCT-A--TTTCAAGGGCAAT-GTCACGTTGTCTTGAGCTT----TTG----TTGTGT-TT-T-AATCAATA-----TCT-TTATTTACcatgtagaatggaacgcacaatatgataaatattgagtatacgtattaggatgtagaatttagagtagcaaatcatggcgtttgaactcctaagcaagaatggctatcaccaaggtgatggcttcatattctctgatttatcgagagggaggcagtgtgttgcaaattgtgctgtattctaaattaattttgaaagatgtgaatttcaaaaatggtcataaag
gi|6 : cgGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCCACGCT-AA-T-A-AAA--G-AGATG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCA-TTTT-GAG---AAT-AT---AT-----CG------AAA--------------AAAC---T--AC----T------TATATT-G-----AGT-TATTTATA---AAAA---A--T-C-ACCTA-TGT-----T-G-AG-ACCATTT-ATGTGAAT--TGTGAGA--CAAGA-T--TAT-ATAG-ATCGAA-A--TC-ATACTT-TATTTAA-A-TC-C-GG-TCTATTATTTTACGG-AG-TAGC--CT-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTTAGTC---ATAGT--TGTAATC-G-CG-A-----------TAAA-------GC-G-----------------GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-ATTT-GT--GATCTATA-ATCG-TAAAC-A--TTAAATTAA-TCT----TGTTTATAA-----GAACAACAG--AAAG-TGCAA-GAAAACT-G-GC-AAAA----------GC-GAGAGCA-C-ACTAAAAC--GTA--A-ATACAA-TA--TAATCAGTAAACAG-TA--GATT-AT---T-TT--TATTCCA-----G-TACTGCTTGTTG-G---AT--AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAAC-ATA-TTCAAGAC-A-G--TGT-TA-GAG-GG-CTCAT-GGG--T--CA-TCGTTCAC-TAGAA-CA-AC--TTA-TCAAC-CGG--TT--C--A-TTG-TTT---CATC--G-ATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--------TTG----T--TGTGTT-T-AAT--A
gi|7 : cg-TTC--AGTCAAAG---TGGCGT-CG---------GGG-TAGCGT---CT---CAAATGAATCTACGCT-AG-T-A-AAAA-G-AG-TG-CAGAAGTT-GCTTGGTC-ATA--TT-----------TTGAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TTA--C-TTAC--A-TGT-A---T-G-AG-A-CATTTC-TGTGAAA--TATGA-A--CAACA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTA-CA-T--CCGG-TCTATT-TTTTACGG-AG-TAGT--CC-A-AGAAGAT-GCGACT-GCAT-CTGA-AG-------------AT-GT--T---ATT-G-T--A-----------T---------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTCTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A-----AATTAA-TCT----TG-TTATGAAAC--GA----------AAG-GGCAA-GGAAACT-G-GCAAAAA----------GG--AGAGCA-C-ACCAAAATG-GCA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TGTT--TATTCCA-------TA--G-TTGTTGTG---ATA-AGTTGCTGTG--TTTTGT-ATGT-------GAAAAA-A------CG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAT-GG-TCCAT-GGA--TC-CA-TTGTTTAC-TTGAG-CA-TC--TGA-TTAAC-C-G--TT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-ATCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTGTTAGTAATTAATG
gi|8 : -TATAC-CAA---TATATC--AATAAAACA-------TGAGCATG--ATAT--ACC--A-G-AT----GCATGAAGAA-TGTAAA-TGA-ACA--TTTGTGAAT-TTAAAT-A-TTGCTTCATACTGAGAGAAATA-CAATCAGCGCTATTTCACTCCGGGATTTC--ACTT---ACCATATT-TACAACAT-TTGCACA--GAGAG---ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TG-AT-GATTT--TGA-A---AAGAA--ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TTATTTTAAACAT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATTC------TAT---CA--AAGTACC-G-GTA--C-TTAA-AATTC--CAAT--TTT-TTTG-T--TCAAAAG-G-ACCA-C-CA-TG--G-TA-TA-TCAA-AT--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtttat
gi|9 : GGGTCACG-GACCC-GTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GT-GGCGC-CG---------GG--TAGCGC---CT---GAAATGAATCTACGCTGAA-T-A-AAA--G-AG-TG-CAGAATTT-GCTTGGTC-ATA--TT-----------T-TAA--AA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-GTATATA-T-TATTTA-A---AA-----A--C-T-GC--ATTGT-T---T-G-AG-A-CATTT-ATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTT-ACA-T--C-GG-TCTATTA-TTTACGG-AG-TAGC--CCGG-AGAAG-T-ACGACT-GCATGCCAA-AG---TTT-TTC---AT-GT--T---ATT-G-T--------------T--A------TGC-GC--------AT-TAAA-GC-TCG-AAACGAA-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGGTTTCTTTTGTTT--GAT-------TC---------------ATTAA-TCT----T--TAATGAAAC--GATCAAC-G--AAAT-TGCAA-GGAAACT-G-GCAAAAA-----------G-GAGAGCA-C-ACTAAAGTG-CTAATA-ATA-AT-TA--TAC-AAGTAATCAG-TT--GA-T-AT---TATT--TATTCC------A-TA--GC-TGTTGTG---ATA-AATTGCTGTGTTTTGTTT-ATGT-------GAAAAA-AAA--catgtaaaatggaacccacaatataataaatattgagtatacatgcatctttaggatataggatttagaattgcaaaacacggtatttaaactactaagcaagactgactatcatcaagtaaatgatgatttgtcgagagggaggcaattgtgctgtattcttaattaaagctcattacgaaaggtgtgaattttaaaaatgatctaaacatga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): TGTGTATTAAAAAATTGTTATATGTAATTACAAAAAGATTAAATCATCTTTGCTGCATTGTGAGGACATTACATGTACTGTAAGGATCGTAAAGTCACATTGCTACACATACATAAAACTGTACGTAGAACTGTACATATT
Unaligned ( gi|32 ): CTTTAGATATTAGCTGAAAACTCATGGGTTAATCCCAAATTAAATC
Unaligned ( gi|33 ): CAGGGGCGGATCAGGAATTCTGGTGGGGGGAGGGGGGC
Unaligned ( gi|34 ): AAATGACTGACATTTCAAGCAACTGTTTACTA
Alignments
lowQualScore : 111111 111 111111111 11 1 11 1111111111111 1111111111111 22222222222222 222222 111 22 11 1 222 666666666666666666666666 11111111 111111 1111111111 2222222 11 22222222222222 11 1 11 22222222 11 2222222 1 222222 11 11 11 11111 11 222 777777777777777777777777777777777777777777777777777777777777777777777777777777 111 1 1 222222 1 1111111 111 11 111 1 33333333 1111 111 11 111 111 1 111111 4444444444444444444444444444444 1111 11 1 11 1 1 55555555555555 11 111 1 1 1 33333 111 1 22222 11 222222222222 1111 222222 111 11 6666666666666 1 1111
lowQualScore : 1 000000 7 3 55 3 44 444 3 222222222 3 555 777 3 3 9 3 33 3 6 3 1 9 3 33 9999999999999 6 3 3 44 3 44 6666666666666 11111111111111 555 44 6666 000000 6 77777 3 3 555 555 44 555 44 3 66666 3 3 3 3 44 44 3 44 3 44 3 3 3 6 6 3 3 88 6 77 3 6 77 3 3 44 3 3 3 3 3 6 555 55 111 3 44 999 3 3 999999999999999999999999 3 11111111 3 3 3 3 3 3 3 000000 5555555555 3 3 7 3 55 666 3 3 4444444 3 7777 3 33 8 55 8 4 4 4 4 55555555555555 4 4 1 4 66 4 4 00 3 4 00 4 4 777 66 55555555 66 55 777 4 33 4 2222222 4 66 888 1 5 5 1 5 5 66 5 5 4 4 4 66 88 4 4 4 4 55 8 4 4 55 55 8 8 2 000000 00 3 3 00 3 3 3 7 55 7777 8888888 7 3 7 22 00000 4 11 000 1 888888888888888888888888888888888888888888888888888888888888888888888888888888 777 11 0 6 5 99 6 6 6 000000 6 3 9999999 6 99 6 6 6 999 6 3 7 66 6 6 000 6 99 6 5 0 33333333 4 5 5 5 5 5 0 888 66 77 5 5 5555 66 5 3 777 6 888 5 5 0 333 5 11 5 5 5 3 333 222 2 3 5 1 333333 5 1 5 888 6 66 888 5 0000000000000000000000000000000 5 0000 00 5 77 5 5 1 1 33 0 3 0 88888888888888 33 7 777 2 0 0 0 6 55555 8 6 6 000 99 6 1 6 99 11111 55 6 5 77 5 5 5 77 5 55 77 999999999999 77 5 5 5 5 5 5 5 2222 5 0 5 3 5 1 444444 000 77 0 5 5 77 5 5 77 1111111111111 0 66 0 5 5 5 5 5 2222 5 5 5 66 3 33 5 5 5 5 5 5 66 77 5
lowQualScore : . ...... . . .. . .. ... . ......... . ... ... . . . . .. . . . . . . .. ............. . . . .. . .. ............. .............. ... .. .... ...... . ..... . . ... ... .. ... .. . ..... . . . . .. .. . .. . .. . . . . . . . .. . .. . . .. . . .. . . . . . . ... .. ... . .. ... . . ........................ . ........ . . . . . . . ...... .......... . . . . .. ... . . ....... . .... . .. . .. . . . . . .............. . . . . .. . . .. . . .. . . ... .. ........ .. .. ... . .. . ....... . .. ... . . . . . . .. . . . . . .. .. . . . . .. . . . .. .. . . . ...... .. . . .. . . . . .. .... ....... . . . .. ..... . .. ... . .............................................................................. ... .. . . . .. . . . ...... . . ....... . .. . . . ... . . . .. . . ... . .. . . . ........ . . . . . . . ... .. .. . . .... .. . . ... . ... . . . ... . .. . . . . ... ... . . . . ...... . . . ... . .. ... . ............................... . .... .. . .. . . . . .. . . . .............. .. . ... . . . . . ..... . . . ... .. . . . .. ..... .. . . .. . . . .. . .. .. ............ .. . . . . . . . .... . . . . . . ...... ... .. . . . .. . . .. ............. . .. . . . . . . .... . . . .. . .. . . . . . . .. .. .
lowQualScore : 4 555555 3 6 00 3 22 222 1 333333333 1 000 999 1 1 2 1 55 1 2 1 1 8 1 55 1111111111111 2 1 1 22 1 22 5555555555555 22222222222222 444 22 5555 444444 2 77777 1 1 888 111 66 666 66 3 44444 3 3 3 3 99 66 3 66 3 66 3 3 3 7 7 3 3 88 7 99 3 7 88 3 3 66 3 3 1 1 1 2 444 22 555 1 22 666 1 1 222222222222222222222222 1 22222222 3 1 1 1 1 3 3 555555 9999999999 6 6 3 6 00 444 6 6 8888888 6 7777 6 55 0 55 0 0 4 4 6 22222222222222 4 4 9 4 11 4 4 66 3 4 66 4 4 888 11 44444444 11 44 888 4 33 4 2222222 4 11 888 4 7 7 7 0 0 99 0 0 4 4 4 11 33 4 4 0 0 55 0 0 0 55 55 0 0 0 444444 00 6 6 00 6 6 6 3 00 7777 2222222 3 6 3 33 00000 0 00 000 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 000 88 6 0 5 22 7 7 7 000000 7 3 3333333 7 22 7 7 7 222 7 2 3 55 7 7 222 7 22 7 5 4 00000000 5 0 0 0 0 0 4 888 99 55 0 0 6666 99 0 2 111 2 888 0 0 4 888 0 99 0 0 0 2 888 000 5 2 7 4 444444 0 4 0 888 2 99 666 0 9999999999999999999999999999999 7 4444 77 7 99 7 7 4 0 22 0 2 0 22222222222222 88 0 555 5 5 0 0 0 66666 0 7 7 888 22 7 7 7 22 88888 88 7 7 99 7 7 7 99 7 99 99 333333333333 99 7 7 7 7 7 7 7 1111 7 7 7 0 7 7 333333 000 11 7 7 7 99 7 7 99 0000000000000 0 99 4 0 0 0 0 0 8888 0 0 0 99 2 88 0 0 0 0 0 0 99 99 7
consensus : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--C-T-AC--A-TGT-A---T-G-AG-A-CATTTCATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTAACA-T--C-GG-TCTATTATTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-G-T--A-----------TAAA------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAA----------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-----A-TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGAACAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG--TAATT-AA-TGCTT-ATTTTTATT-AA-AG-TGGTA-----AATTCCAA-TGGA--C-AAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATCAAAAAACGGAGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATACC--TGCGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTCAAAAA-A-TCTTTGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAAGACG--ACAT-TACC-GA-G-ATTG-CGCA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGNGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TGAAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--C-TCAA-A--TT--CAA---TTG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
Reference ( family-1008 ) : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--C-T-AC--A-TGT-A---T-G-AG-A-CATTTCATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTAACA-T--C-GG-TCTATTATTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-G-T--A-----------TAAA------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAA----------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-----A-TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGAACAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG--TAATT-AA-TGCTT-ATTTTTATT-AA-AG-TGGTA-----AATTCCAA-TGGA--C-AAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATCAAAAAACGGAGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATACC--TGCGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTCAAAAA-A-TCTTTGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAAGACG--ACAT-TACC-GA-G-ATTG-CGCA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGNGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TGAAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--C-TCAA-A--TT--CAA---TTG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
gi|1 : GGGTCACGTGACCC-GTCTAT------T-GGTTAA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTCTATA--CT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GA------C-------GAA--------------AAAC---T--AC----T------ATTATT-G-----A-T-TATTTATA---AAAA-TCA--C-T-A---A-TGT-A-----G-AG-A-CCTTTTATGTGAAA--TGTGA-A--GAAGA-T--TAT-A-AG-ATCGAA-A--TC-ATACTTATATTTAACA-T--C-GG-TCATTTATTTTCCGG-AG-TAGC--CT-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTT-TTC---AT-GT--T---ATTCG-TCGA-----------TAAA------TGC-G---------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATA-ATT----------AGA-TTAA-CAAAGTTTTC-TTTG-TT--GATC--TA-ATCG-TAAAC-AGTTTAAATTAA-TCT----TG-TTATGAAACA-GATCAACTG--AAAG-TGCAA-GAAAACT-G-GCAAAAC----------GGAGAGAGCA-C-ACTAAAATGCGTA--A-ATACAA-TA--TAATCAGTAAACAG-TA--GA-T-TT---TATTTATATTCCA-----AGTA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA--C-AAGAC-ACG--TGT-AA-GAG-GG-T-CAT-GGG--TC-CA-TCGTTCAC-TTGAA-CA-AC--TTA-TCAAC-C-G--CTTACG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--TT----TTG-------TGT-TT-T-AAT--ATA-----TCT-TTATTACCAA--AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATATAGACTGTTTAGTTTAATT-AA-TTTTTCATTGTTA-T-AA-AGTTGGCA-----AATTCCAA-TGGA--C-AAACACA-TAAATTT-ATC-AG-TTTGATTGAAAATCAAAAAACGAAAAGATTTT-GAA--GATC-TG---TAC-AATTATTCAAAAAATACCTGTGTGGAGAAGC-A-CA--TTGAAATT-TACAAAATTCTT---ATTG-GAAA-CAA-A----TTT--AAAA-TTCAAACA-A-TCTT--G---AGAAA-C-AATTTA---T-ATT--GAAGTTCTTG-GACGA-ATTG--GCCTTGG-AGGATAGTCAAGCAA-T-TAG---A-AAATGTTAT-C-TAA---GA-TTC--AATTAAA-AAGAG-ATTGGA--------AT-TACC-GA-GCATTGCCACA-GAAGAA-C--AAA-TTC-ACAACTTTGTGAAT-CTAAAT-A-TTGCTTCATATGCCGA-AAATTCCAA-CAGCGTT--------------TTTT--A-TT---A-CGTATTATGCAATATAGTGCACATTGAGAATCTATCATGTTT-ATTTT-GAAAG-AC---GTTAA-TGTAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-A--TTG---TGAACA--GTCAAG-TGGTAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATC-TCGTAGCGATATCTGGTGGTTT-TATACAA----TAT---CA-CCAGTACCTGCGTACCC-TCAAGA--T----AA---CTG-TTTGATAATCTAAAG-G-ACAA-C-TAGTA--T-TA-TA-TTAA-AC--T-CAAT-AGG-AAGAACAA-CA-C------AA-T-GATAAACCA--CAACAATAAT
gi|10 : GGGTCACGTGACCCCGTCTAT------T-GGTTTATCT--G-TTC--AGTTAAAG---TGGCGC------------GGG-TAGCGC----T---GATATGA-TCTACGCT-AA-T-A-AAAAAG-AG-TGGCAGAATTT-GCT-GGTC-ATA--TT-----------T-GAAGTCA-GTTT-GAGA--AA--AT--GAT-----C-------AGAG-------------AAAC---T--AC----T------TATACTCG-----A-T-GATTTATA---ATAA-AGA--C-TTGC--A-TGT-A---TCGTAG-A-TATTT-ATGTGAAA--TGTGA----CAAGAAT--TA--A-AG-CTCGAATA-TTCTATACTT--ATTTA-CA-T--CCGG-GCTATTATTT-ACGGTAG-TCAT--CC-G-AGAAGATTACGACTTGC----TGA-AG---TTT-TTC---AG-GT--T---ATT-GGT--A-----------TG--------TCC-GC--------AT-TTAA-GC-TCG-AAACG-AGTGTAA-T-GC------GG-AATATTTT----------AGA-TTAA-CAAAGTTTTC-TTTG-TT--G-------------------A--TTGAATTAA-TCT----TG-TTA-GAAACA-GATCAAC-G---AAG-TCCAA-GAAAACT-G-GCAAAAA-----------G-GAGAGCA---ACT-AAATG-GT---A-ATATAT-TA--T-A-CAGTAAACAG-TT--GA-T-ATTAATATT--TATCC-------A-TA--GGCTGTTGT----ATATAGTTGCTGGTGTTTTTGT-ATGT-------GAAAAA-AAA--CCCC---ACt
gi|11 : cgTCAAAAAAT-CT--TGCG-AGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G--AAA-CAA-A----TTT--AAAA-T-AAAAAA-A-TCTCTGG---AGAAA-C-AAATGA---T-ATT--G-CGTTCTTG-GA-GAC-TT---GCCTTGGCC-GATA-TC-AGCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAG-ATTGAAGACA--ATAT-CA-C-GA-G-A-TG-C-CA-GAAGAA-T--AAA--GC-ACA--TTTGTGAAT-CTAAAT-ATTTGCTTCATATTGCG--AAATT-C-A-CAGCGTT-------------ATTTTTAATTTTAAACC--AAT-TGCAATAT-GTGCACATTGAG-----ATCATTGAT-ATTTT-GAAAG-ACA--GT--A-TGAAT-CGGTT--TGA-CA--AAAAA--ATGAACAG-T--GC-ATTTTG-TTTGAA-A--G-CAAATT--TAGAA------------TAA--TTAAA-ATAGT-G-CACC-ATA-T-GT----ATA-CTCGT-GT-T-CATAC------TCT---CA--CAGTA-C-G-GTA--CTTCAA-A--T---------TGG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TATTTAA-AC--TCCAATCAGGT--TTAAAT-CT-CTG-TA-AA-T-A--AGACCA--C-ACAA
gi|12 : cgacacacaGGGCCACGTGACGCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GT-GGCGC-CA---------GGG-TAGCGC---CT---TAAATGAATCTACGCT-AA-T-A-AAAA-G-AG-TG-CAGAACTT-GCTTAGCC-ATA--TT-----------TTGAA-TCA-TTTT-GAGG--AATGATAAGAT-----ATTTTAAAAAA--------------AAACAAAC--AC----CA-----TATATT-G-----A-T-TATTTATA---AAAA-TTA--C-TTAC--A-TGT-A---T-T-AG-A-TATTTC-TGACAAA--TATAA-A--CAAGA-C--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTACTT-C--C-GG-TATAT-GTTTTACGG-AG-AAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---AGT-G-T--AACGCGCT----CAAAGAAAGGTAA-AC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATCTTAAACTAACAAAGA-TTAA-CAAAGATTGT-CTTA-TT--GATC--TA-TTCG-TAAAC------AAATTAA-TCT----TG-TTATGAAAC--GATGAAC-G--AAAG-TGCGT-GAAAACatacatgtt
gi|13 : cgGAAGGGAAGAATTTAAACTGTT-AG--TAATTTAACTGCTT-AATTCTATTCAA-AG-TGGTA-----ATCTCCAA-TGGAACC-AAA-ACA-TAATTTT-A-CCAGTTTTTACTGAAATGCACAAAACCG-GAGATCTTTGAA--GATC-TGA--TACTAATCA---AAAAAAT-CC--T-TGGAGAAGCCA-CAATTTGAAA-T-TACAAAA-TCTT---G--G-GAAAACAATA----TTTTAAAAA-TTCAAAAA---TCTTTGG---AGAAATC-AAATTA---TTATTT-G-AGTTGCTGTGA-GACATTTGTGCCTTGG-A-GATAGTCAAGCAC-T-TAGACAA-GAATG-TCTGCTTAAAATGATTTCAGAGTTAAAAAAGAC-ATTGAgga
gi|14 : agacagagagagagagaGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCAC-CA---------GGG-TAGCGC---CT---CAAATGAATCTACGCT-AA-T-ATAAA--A-CG-TG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCA-TTTT-GAGA--TAT-AT--GAT-----C-------AGA--------------AAAC---TCAAT----TCAATTCTATACT-G-----A-T-TATTTATA---AAAA-TGA--CTT-AC--A-TGT-A---T-G-AG-A-CATTTC-TGTGAAA--TAATA-A--CAAAA-T--TAT-A-AG-ATCGAA-ATTTC-ATACTT-TATTT-ACATT--C-GG-TCCATT-TTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---ATT-G-TA-A-----------TTAA------TGC-GCATTTAATGAT-TTAA-GC-TCG-GAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGATTTC-CTTG-TT--GACC--TA-ATCG-TAAAC------AAATTAA-TCT----GG-TTAcacttaaacaagatgcaagtatagaattaacatgccacatctttattgcttccaggtcagaatccaggaaatttctggttagtggggggggggggggggc
gi|15 : cgg-GC-TTG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTT-TT--GATC--TA-ATTG-TAAAC-A-----AATTAA-TCT----TG-TTATAAAAC--GATCAAC-G--AAAG-TTCAA-GAAAACT-C-GCAAAAA----------GG--AGATCA-C-ACCAAAATG-GTA--A-ATCCAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---AATT--TATTCCATACATG-TA--GCT-GTTGTG---ATA-AGTTGCTGTG-TTTTTGT-ATGT-------GAAAAA-AAA--CCCA---ACGATATTA-TT-ATTAC-A-G--TGT-AA-GAG-GG-TCCAT-------------TGTTTAA-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AA---AACAAAACAA
gi|16 : -T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAATACATGTACATGTAA--TTAAA-AT-GT-GACA-C-ATACT-GT----ATA-CTGGT-GTCT-CATAC------TATCCCCA-CTAGTAAC-C-GTA--C-TCAA-A--TTTCCAAATGTTC-TTTG-T--TCAAACG-GAACCACC-TA-TA--T-TA-TA-TTAA-AC--TCCAATCA-CTATTAAAAA-CT-CTGATA-AA-A-A--AACCCA--C-ACAaacaaaaaaggagagagagagaagagattgactgtt
gi|17 : -TTTG-T--TTAAACG-T-ACCC-C-TA-TA--TGTA-TA---AATAC--TC-AATCAGGTAATT-AAA-CTGCTG-TA-AAGTAA--AAACCA--T-tgcatggtaaaatggaacccacaataataataaatatatattaggatgtagaattagatactagcaaatcatggcgttaaactcctttagaagcaaagactcactatcaccaagtgatggactttcatattctttcttgaattgttggcaaattgtgctatattcttaattaaattcgttatgaaagatgtgaatttcaaaaatgatctaaa
gi|18 : ccaaagtAGCGC---CT---GAAATGAATGTACGCT-AA-T-A-AAA--GGAG-TG-CAGAATTT-GCTTAGTC-ATA--TT-----------TTGAA-CCA-TTTT-GAGA--AAT-----GAT-----C-------AGATATTTCAATGAACAAAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAAATTA--C-TTAC--A-AGT-A---T-T-AG-A-TATTTC-TGACAAA--TGTGA-A--CAAGA-C--TTT-A-AG-ATCGAA-A-TTC-ATACTT-TATTT-ACATT--C-GG-TCTATTA-TTTACAG-AG-TAGC--CC-G-AGAAGAC-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGAT-GT--T---ATT-G-T--AACGCGCTCTTGTAAAGAAAAGTGA-AC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-acatgtacatcaatagaacccacaaataaataatatattggaatgatacatattaggatgtacgaaatttagaggagcaagcaggcgtttaacctctttagagaaggcaagactgcactatcaccataggtgataggacttcgatactcgtcattgtcgatagggaggtagttgtgttctgcagaaattgcgctaaatagtaatatcttacattaaagtcacatatgatagatgtgaatttcaaaaatggtctaaaatgactt
gi|19 : GGGTCACGTGACCCAGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCGG-AG---------GGG-TAGCGC---CC---GAAATGAATCTACACT-AA-TAA-AAA--G-AG-TG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCG-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--CTT-AC--A-TGT-A---T-G-AG-A-CATTTC-TGTGA--------A-A--CAAGA-TAATAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTT-ACA-T--CTGGTTCTATT-TTTTACTG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GTAT-CCGA-AG---TTT-GAC---A--------------------------------AGA------TG---------------TTAA-GC-TAG-AAACG-
gi|2 : acgGGGTCACGTGACCCCGTCTAT------TTGGTTTA-CTTGG-CTCTCAGTTAAA--GTTGGCGCGCG---------GGG-TAGCGC---CTTAAGAAATGAATCTACGCT-AA-T-A-AAAA-G-AG-TG-CAGAATTCTG-TTGGTC-ATAGTTT-----------T-GAAATCA-TTTT-GAGA--AAT-AT--GAT-------------AGA--------------AAAC---T--ACCTTAT------TAT-TT-G-----A-T-TATT-ATA---AAAA-TGAACT-T-AC--A-TGTCA---T-G-AA-A-TATGTTATGTGGAAATTGTGA-A--CAAGA-T--TAT-A-AG-ATTGAACA-TTC-ATACTT-TATTTA-CA-T--CCGGCTCTATTATTTTACGG-AG-TAGC--CC-GCAGAAGAT-ACGACT-GCAT-C-GA-AG---TTT-TTC---AT-GT--T---ATT-G-T--A--------------A------TGC-GC--------AT-TTAAAGC-TCG-AAACG-A-TGTAAATTGC------GGGGAAATTTT----------AGAATTAA-CAAAGTTGTC-TTTG-TTTGAATC--TA-ATCGCTAAAT-A--TTAAATTAAATCT----TG-TTATGAAACACGATCAAC-G--AAAGCTGCAATGAAAACTTG-GCAAAC-----------GG-GAGAGCAGC-ACTAAAATG-GTA--A--TACAA-TAGATAAACAGTAAACAG-TATAGA-T-AT---TATT---ATTTCC-----A-TA--GCT-GTTATGTTGGTA-AGTTGC-GTG-TTTTTGTCATGTTGA----AAAAAA-AAA--CACG---ACAACAATA-TT-A-GAC-A-G--TGTTAACGAGCGGCTCCATAGGG--TC-CA-TCGTTTAC-TTGAA-CAAGC--TGA-TCAAAAC-G--TT--CGCA-ATG-TTC---TCCC--GAATTTTAGAAC-T-A--TTTCAAGGG-AAT-GTCAAGTT-TCTTGA--TTTTGCTTG----T--TGT-TT-TGAAT--ATA-----TCT-TT-----------ATGGACCAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAC--ATT--AACTG-TTAG--TAATT-TA-TGCTT-ATTTTATTT-AACAGTTGGT------AATTCCAA-TGGA--CAAAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATTCAAAAACG--GAGATATT-GAAAGAATCTTGACTTAC-AACT-TTCAAAAAAT--C--TTTGGAGAAGC-ACCA-TTTGAAA-TCTACAAAAATCTTGGAG--G-GAAA-CAC-ATTGGTTT--AAAATTTCAAAAACA-TCTTTGGAGAAGAAA-CAAAATTAATTT-ATTTGG-AGCTGATT-GA-GACATG---GCCTTGG-A-GATAGTCAAGCACTT-TAG---ACAAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATT-----TG--ACAT-TACCAGATG-ATT---TAA-GAAGAATT--AAATTGC-ACA--TTTGTGAAT-C--AATAA-TTGC
gi|20 : acg--GAATTTTAGAAT-T-A--TTACAAGGG-AAT-ATCAGGTT-TC-TGA--TT----TTG----T--TGT-AT-T-AAT--ATG-----TC--TAATTGA
gi|20 : AGAGAA-----TAA-CTGAT-AG--TACTC-AA-TGTTT-ATTTTT--T-GA-AA-TGGTA-----A-CTCCAG-TGGA--C-AAA-ACA-TA--TTTGA-C-A-TTTTTATTGAAAATT-AAAAACG--GAGATCTT-GAA--------AA--TAC-AATattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatagagaataactgatagtactcaatgtttattttttgaaatggtaactccagtggacaaaacatatttgacatttttattgaaaattaaaaacggagatcttgaaaatacaat
gi|21 : gaattttagaattattacaagggaatatcaggtttctgattttgttgtattaatatgtctaattgaattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatTTGAGA----TCTATGTTTTATTTTTGAAAG-ACAAGGT--AGTGAATTGGTTT--TGA-TCTAAAAAAT-ATG-ATAA-TTGGCGATTTTG-TTTGAA-ATTG-CAAA-T----GAA------------TAA--TCAAA--T-GT-GACA-CGATA-T-GT----ATA-CT-------T-TAT----------C---CA-CTAGTACC-G-GTA--C-TCAA-A--TT---GG---T---TTTGTT--TCAAACGTG-ACCA-CTTA-TAT-T-TATTA-TCAA-ACATTCCAATCAGG-AAT--AAT-CT-CTG-TATAA-T-A--
gi|22 : TCAAAAAAT-CT--TGCG-AGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G--AAA-CAA-A----TTT--AAAA-T-AAAAAA-A-TCTCTGG---AGAAA-C-AAATGA---T-ATT--G-CGTTCTTG-GA-GAC-TT---GCCTTGGCC-GATA-TC-AGCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAG-ATTGAAGACA--ATAT-CA-C-GA-G-A-TG-C-CA-GAAGAA-T--AAA--GC-ACA--TTTGTGAAT-CTAAAT-ATTTGCTTtatagggaccatcacattacatgtaaaa
gi|23 : acaT-GAAAGGACG--AG--A-TGA-T-GGTTTGCCAATC---AAAAATAATG-ATAACT--GC-ATTTTGGTTTGAA-A--G-CAA--T--TAGAA------------TAT--TTAAA-AT-GTTGACA-C-ATA-T-------ATA-CTGGT-GTCTGCATAC------TAT---CATCCAGTACC-G--TA--C-TCAA-A--TT---A------G-TTTG-T--TC-AACG-G-ACCA-C-TA-TAATC-TA-TA-TTAA-A---TCCAATCAGGTAATTAAAATCT-CTG-TA-AA-T-A--AGACCACCC-ACAATA
gi|24 : CATGATCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-G-TGGCGC-CG---------GGT-AAGCGC---AT---GAAATGAATTTACGCT-AATT-C-AAA--C-AG-TG-CAGAA-TTTGCTTGGTC-ATA--TTTTGAATGTTTAT-GAA-TCA-TTTT-GAGA--AAT-TT--TAT-----C-------AGA--------------AAAC---G--AC----C------TATATT-G-----A-T-Tca
gi|25 : G-GA-TCCAT-GGG--T---------TTAC-TTGAA-CA-GC--TGACTTAAC-C-A--TT--CG-A-TTG-TTT-----TCAAGAA-TTTAGAAT-TAA--TTACAAGGG-AATAGCAAAGTT-TC-T----TT----TTGATTTT--TGT-TTGTAAATA-ACG-----TCT-TTATTGAgagatgaaaaatta
gi|26 : -A-G--TGT-AA-GAG-AG-TTCAT-GGG--TC-CA-TTGTTTAT-TTGAA-CA-GC--TGA-TTAAC-C-T--TT--CG-A-TTG-TTT-----TCAAGAATTTTAGAAA-T-T--TTACAAGGA-AAT-AGCAAGTT-TC-TGA---T----TTG----T--TGT-TT-G-AAT--ATGCAGTATTT-ATATTGAattcgttgattttggcatcgttaagacgtcctctttttc
gi|27 : A-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTTT---CA-C--TAATTTTAGAAT-T-A--TTCCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TTT-TTATTGACAA--AA---AACAAAattcgttgattttggctattgtta
gi|29 : ATTCAAAAATCA----TG-GAAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA---A-T----TTT--AAAA-TTCAAAAT-A-TCTT-GG---AGATA-C-AAATTA---T-ATT--G-AGTTCTGG-GA-GACATT---GCCTTGG-A-GATAGTCAAGccaccaccccccaaaggaaaagagagagagagaagagaataactgtta
gi|3 : caaTC--AGTTAAAA-AGTGGCGC-CG---------GGGATAGCGC---CTT--GAAATGAATCTACG-T-AA-TAA-AAA--G-AG-TG-CAGAAATTTGCTTGGTC-ATA--TT-----------T-GAA-TCATTTTT-GAG----AT-AT--GATTCAGAC-------AGA--------------AAAC---T--AC----TG-----TATATT---------T-TATTTAT----AAAA-TGA--CTT-AC--A-TGT-A---T-G-AGAA-CATTT-ATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AGCATCGAA-ATTTC-ATACTT-TATTTTACA-T--C-CG-TC-ATTATTTTACGG-AG-TAGC--CC-G-A-AAGAT-ACGACT-GCAT-CCGA-AGAATTTT-CAT---AT-GT--T---ATT-G-T----------------AA------TGCGGC--------AT-TTAA-GC-TC--AAACA-A-TGTACAT-GC------GGGAATAGTTT----------AGA-TTAA-CAAAGTTT---CTTG-TT--GAT---TATCTCG-TAAAT-A--AT-AATT-A-TCT----TC-TTATGAAAC--GATCAAC-G--AAAG-TGCAG-AACAACT-G-GC-AAAA----------CA-GAGAGCA-C-ACCAAAATG-GTA--ATACACAA-TAT-TAA-CAGTAAACAGCTA--GA-T-AT---TATT--TATTCCA-----T-TA--GC-TGTTGTG---TTA-AGTTGCTGT-GTTTTTGT-ATGT-------GAAAAA-AAAACCCTG---ACAACAATA-TT-AAGACAA-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCG-TTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-ATTTG-TTT---CA-C--GAATTTTAG-AT-T-A--TTTCAAGGG-AAT-GTGAAGTT-TC-TGA--TT----TTG----T--TGTGTT-T-AATA-ATA-----TCTATTATTGAC
gi|3 : AGAA--TTTTAA--TGTT-AG--TAATT-AA-TGCTT-ATTT--ATT-AA-AG-TGGTA-----A-TTCCAAGTGGA--C-AAA-ACACTAAATTTTA-C-AGTTTTTATTGAAAATCAAAAA-CGGAGA--TCTT-GAA--GATC-TGA--TAC-AATTA--CAAAAA---TC--T-TGGAGAAGC-A-CA-TTTGAA--T-TACAAAAATCTT---G--G-GAAA-CAA-AT---TTT--AAAA-TTC-AAAA-A-TC-TTGG---AAATA-C-AA--TAT--T-ATT--A-AGTTCTTG-GA--ACATT---GCCTT-G-A-GAT-GTCAAGCAC-T-TAG---ACAAATG-TATGC-TAA---GA-TTC--AATTAAATAAGAG-ATT------G--ACAT-TACC--A-G-AT----GCA-AGAGAT-A--AAA-TGCAATA--TTTGTGAATCCTAAAT-A-TTGCTTcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaattttaatgttagtaattaatgcttatttattaaagtggtaattccaagtggacaaaacactaaattttacagtttttattgaaaatcaaaaacggagatcttgaagatctgatacaattacaaaaatcttggagaagcacatttgaattacaaaaatcttgggaaacaaattttaaaattcaaaaatcttggaaatacaatattattaagttcttggaacattgccttgagatgtcaagcacttagacaaatgtatgctaagattcaattaaataagagattgacattaccagatgcaagagataaaatgcaatatttgtgaatcctaaatattgctt
gi|30 : tcagttaaaaagtggcgccggggatagcgccttgaaatgaatctacgtaataaaaagagtgcagaaatttgcttggtcatatttgaatcatttttgagatatgattcagacagaaaactactgtatattttatttataaaatgacttacatgtatgagaacatttatgtgaaatgtgaacaagattataagcatcgaaatttcatactttattttacatccgtcattattttacggagtagcccgaaagatacgactgcatccgaagaattttcatatgttattgtaatgcggcatttaagctcaaacaatgtacatgcgggaatagtttagattaacaaagtttcttgttgattatctcgtaaataataattatcttcttatgaaacgatcaacgaaagtgcagaacaactggcaaaacagagagcacaccaaaatggtaatacacaatattaacagtaaacagctagatattatttattccattagctgttgtgttaagttgctgtgtttttgtatgtgaaaaaaaaaccctgacaacaatattaagacaagtgtaagagggtccatgggtccatcgttacttgaacagctgatcaaccgttcgatttgtttcacgaattttagattatttcaagggaatgtgaagtttctgattttgttgtgtttaataatatctattattgaccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTCACGTGACCCCGTCTATTACTAGT-AGTTTA-CT--G-TTC--AGTCAAAG---TGGTGC-AG---------GGG-TAGCAC---CT---CAAATGAAT
gi|31 : gtca-GCGACT-GCAT-CCGA-AG---TTT-ATCAAGAT-GT--TAA-ATT-G-T----------------AA------CGC-GC--------
gi|4 : TTAG--TAATT-AA-TGTTT-ATTTTT--C-AA-AG-TGGTACATGTAATTCCAG-TGGA--C-AAA-ACA-TAAATTT---T-AGTTTTTATTGAAAATTAAAAA-CGGAGA--TCTT-AAA--GATC-TGA--TAC-AATTA-----AAAACATC--T-CGGAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCCT---G--GAGAAA-CAA-A----TTT--AAAT-TTCAAAAA-AATCTTGGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-CAA----A-------------TTC--AATAAAATAAGAGCAT----GACATTACATGTACC--A-G-A-TG-CAC--GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-TTAGAT-A-TTGCTTCATATTGAGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCATATT-TGCAATAT-GTGCACAATGAG-----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TG-AT-GGTTT--TGA-C---GAAAA--A---ATAA-T--TT-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGAT-GTCT-CATACTACATGTAT---CA--CAGTACC-G-GTA--C-TCAA-A--TTTCCAA---ATGTTTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtcaaagaa
gi|5 : tgGGGTC-CGTGACCCCGTCTCT------TCGGTTTA-CT--GCTTC--AGTTAAAAAGTTGGCGC-CGTCCGAGGCTGGT-TAGCGCAACCT---GAAATGAATCTACGCT-AA-TAA-AAA--G-AGTTG-CAGAATTTTG-TTGGTC-A-A--TTTA---------T-GAA-TCA-TTTTAGAGAACAAT-AT--GAT-----C-------AG---------------AAAC---T--AC----TGTA---TATATTCG-----C-TCTATTTATAAACAAAA-TGA--C-T-------TGT-AAACT-G-AG-A-CATTT-ATGTGAAA--TG-GA-AAGTACAG-T--TATAA-AG-ATCGAA-T-TAC-ATACTT-TATTT-ACA-TCCC-GG-TCTATAA--TTACGG-AGCTAGCCTCC-G-AGAAGAT-ACGAC--GCAT-CCGA-AG---TTT-TTC---GA-GTACT---GCT-G-T----------------AA------TGC-GC--------ATATTAA-GCTTCGAAAACG-A-TGTAAAT-GCATAAGGGGGAATATTTT----------AGA-TTAACCAAAGTTTTCTTTTG-TT--GATC--TA-ATCG-TAAATAA--TTACATTAA-TCTTACGTA-TGATGAAAC--GATCAAC-GGCAAAGTTGCAA-GAAAACT-GCGCCAAAACAGGCGCGGGGG-AAGAGCA-CAACT-AAATG-GTA--A-ATCCAACTA--TAA-CAGT-AACAG-AAT-GA-TAAT---TATT--TATTCC------A-TA--GCTTG-TGTA---TTA-AGTTGCTGT-GTTTGTGT-ATGTTGGAAGAGAAAAACAAA--CCCGCGCACAACCATATTT-AAGAC-A-GACTGT-AA-GAG-GG-TCAAT-AGGCTTCGCAGTCGTTTACTTTGAACCA-GCCTCGATTCAAC-C-GTTTT--CGTATTTG-TTTTCCCACC--GAATTTTAACATCT-A--TTTCAAGGGCAAT-GTCACGTTGTCTTGAGCTT----TTG----TTGTGT-TT-T-AATCAATA-----TCT-TTATTTACcatgtagaatggaacgcacaatatgataaatattgagtatacgtattaggatgtagaatttagagtagcaaatcatggcgtttgaactcctaagcaagaatggctatcaccaaggtgatggcttcatattctctgatttatcgagagggaggcagtgtgttgcaaattgtgctgtattctaaattaattttgaaagatgtgaatttcaaaaatggtcataaag
gi|6 : cgGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCCACGCT-AA-T-A-AAA--G-AGATG-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T-GAA-TCA-TTTT-GAG---AAT-AT---AT-----CG------AAA--------------AAAC---T--AC----T------TATATT-G-----AGT-TATTTATA---AAAA---A--T-C-ACCTA-TGT-----T-G-AG-ACCATTT-ATGTGAAT--TGTGAGA--CAAGA-T--TAT-ATAG-ATCGAA-A--TC-ATACTT-TATTTAA-A-TC-C-GG-TCTATTATTTTACGG-AG-TAGC--CT-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTTAGTC---ATAGT--TGTAATC-G-CG-A-----------TAAA-------GC-G-----------------GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-ATTT-GT--GATCTATA-ATCG-TAAAC-A--TTAAATTAA-TCT----TGTTTATAA-----GAACAACAG--AAAG-TGCAA-GAAAACT-G-GC-AAAA----------GC-GAGAGCA-C-ACTAAAAC--GTA--A-ATACAA-TA--TAATCAGTAAACAG-TA--GATT-AT---T-TT--TATTCCA-----G-TACTGCTTGTTG-G---AT--AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAAC-ATA-TTCAAGAC-A-G--TGT-TA-GAG-GG-CTCAT-GGG--T--CA-TCGTTCAC-TAGAA-CA-AC--TTA-TCAAC-CGG--TT--C--A-TTG-TTT---CATC--G-ATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--------TTG----T--TGTGTT-T-AAT--A
gi|7 : cg-TTC--AGTCAAAG---TGGCGT-CG---------GGG-TAGCGT---CT---CAAATGAATCTACGCT-AG-T-A-AAAA-G-AG-TG-CAGAAGTT-GCTTGGTC-ATA--TT-----------TTGAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TTA--C-TTAC--A-TGT-A---T-G-AG-A-CATTTC-TGTGAAA--TATGA-A--CAACA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTA-CA-T--CCGG-TCTATT-TTTTACGG-AG-TAGT--CC-A-AGAAGAT-GCGACT-GCAT-CTGA-AG-------------AT-GT--T---ATT-G-T--A-----------T---------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTCTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A-----AATTAA-TCT----TG-TTATGAAAC--GA----------AAG-GGCAA-GGAAACT-G-GCAAAAA----------GG--AGAGCA-C-ACCAAAATG-GCA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TGTT--TATTCCA-------TA--G-TTGTTGTG---ATA-AGTTGCTGTG--TTTTGT-ATGT-------GAAAAA-A------CG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAT-GG-TCCAT-GGA--TC-CA-TTGTTTAC-TTGAG-CA-TC--TGA-TTAAC-C-G--TT--CG-A-TTGTTTT---CA-C--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-ATCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTGTTAGTAATTAATG
gi|8 : -TATAC-CAA---TATATC--AATAAAACA-------TGAGCATG--ATAT--ACC--A-G-AT----GCATGAAGAA-TGTAAA-TGA-ACA--TTTGTGAAT-TTAAAT-A-TTGCTTCATACTGAGAGAAATA-CAATCAGCGCTATTTCACTCCGGGATTTC--ACTT---ACCATATT-TACAACAT-TTGCACA--GAGAG---ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TG-AT-GATTT--TGA-A---AAGAA--ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TTATTTTAAACAT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATTC------TAT---CA--AAGTACC-G-GTA--C-TTAA-AATTC--CAAT--TTT-TTTG-T--TCAAAAG-G-ACCA-C-CA-TG--G-TA-TA-TCAA-AT--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtttat
gi|9 : GGGTCACG-GACCC-GTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GT-GGCGC-CG---------GG--TAGCGC---CT---GAAATGAATCTACGCTGAA-T-A-AAA--G-AG-TG-CAGAATTT-GCTTGGTC-ATA--TT-----------T-TAA--AA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-GTATATA-T-TATTTA-A---AA-----A--C-T-GC--ATTGT-T---T-G-AG-A-CATTT-ATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTT-ACA-T--C-GG-TCTATTA-TTTACGG-AG-TAGC--CCGG-AGAAG-T-ACGACT-GCATGCCAA-AG---TTT-TTC---AT-GT--T---ATT-G-T--------------T--A------TGC-GC--------AT-TAAA-GC-TCG-AAACGAA-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGGTTTCTTTTGTTT--GAT-------TC---------------ATTAA-TCT----T--TAATGAAAC--GATCAAC-G--AAAT-TGCAA-GGAAACT-G-GCAAAAA-----------G-GAGAGCA-C-ACTAAAGTG-CTAATA-ATA-AT-TA--TAC-AAGTAATCAG-TT--GA-T-AT---TATT--TATTCC------A-TA--GC-TGTTGTG---ATA-AATTGCTGTGTTTTGTTT-ATGT-------GAAAAA-AAA--catgtaaaatggaacccacaatataataaatattgagtatacatgcatctttaggatataggatttagaattgcaaaacacggtatttaaactactaagcaagactgactatcatcaagtaaatgatgatttgtcgagagggaggcaattgtgctgtattcttaattaaagctcattacgaaaggtgtgaattttaaaaatgatctaaacatga
blockSeqs : C TACTAG T T TG C TC AGT G TCCGAGGCT A AAC TAA G T A T AA G T G T T . GT TTGAATGTTTAT G T A AC G AA ATTTTAAA TATTTCAATGAACA AAA CA CTTA CAATTC C TATAT G C AAC ATT AC TT CT T AAAC C T A C TA AT G AG A AA A T C T T T . AC T CC C T AT T C CT G C T T G G AAT AG AAG A AC GTA . G AACGCGCTCTTGTAAAGAAAAG G ATTTAATG A A T A A G T ATAAGG AAACTAACAA A C T T TG CTA T C AATTA A TACG T AC A GC C T T C A CAGGCGCGGGGGA G A A . AT T C GA A C TA T A TAA . ATACATG CT CT TTG T TG C TGGAAGA C AC CGC A T C T A . AC T C C C A CT CG G T C A CT C A G TT . C T T TCCCAC AA C A GT C A G T GC TTGC ATTTT G G G CA CAGTA A TT TGG C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN GAA TT A T T . T C . CTATTC C T CATGTAA G AC A . C GA C A A GA G T AGA T CT T T CTTGC G C C A . C GGA . AG A T TTGG TA T T CA T AGA T A ATT T TG . T . A TGT CC G A T A ACAAG . G T AAT T AG AAA C GACATTACATGTACCAGATGCA T TGT TT A . C A T C AG . A T ATTTCACTCCGGGA TA T TAA C A . . T AG T T G AAG . G A T GC TCTA TA A C TG G G . TT . AT . TACATGTACATG TT C A T C G C . . . . C G A TACATG CCC TC . . . T . AT TTCCAAATGTTC T . T A C T . ATC T T T AT T TA T G A T G A . CC .
blockSeqs : C . C . . . . GT . . . . T . . A . A . A . C T . T TAT A . . . . . TCAGAC G . . . GTA C . . . . AG . TT . . CA . . . . A . . . . . . . . C T . . TA T C T C GT . . . . . . . . . . T AAG . . AA . . AACGCGCTCAAAGAAAGG . . . . . . . . . . . . . T . . C . . ATTG . . . A . . T . . . A GGG . . A . . . . T T . T . . . . CA . TT . . GG . TGA . . . A . . A . . . . . . . . . C . . . . . T . . . . T T T TCC AA . . . . . . T . . TTG G . A A . . . . A A TT A A T . . . . TATTT . . AT . . . . . TA . C A GA G . G . . . T CTTGC G . . . . . . . G . . T . . T AA T . . . T . T . . . A . CC G A . A ACA . G . . T . TAA . GAAGACAATATCACGAGATGC . TT T . . . . T A A . A . A . T . C A . . T A . . . A . . A . . CA T . . . . . . . . A . . . . . . . . . . . . . C . A . . C . . . . . . TTCCAAATGT . . . . . . . TG . . . . T AA . . . . . . . . .
blockSeqs : C . . . . . . AG . . . . . . . A . A . . . T T . T TT . . . . . . CG . . . . A . . . . . TT . TT . . A . . . . C . . . . . . . . . . . . AA . . C . AT . . . . . . . . . . G AAG . . . . . AATTAA . . . . . . . . . . . . . . . . C . . ATTA . . . . . . . . . . A CAG . . A . . . . . . . . . . . . AT . TT . . GT . . . . . A . . A . . . . . . . . . C . . . . . . . . . . . . T CAT . . . . . . . . . . T . . . A . . . . T T . T . . . . . TTT . . AA . . . . . A . A A G G . G . . . . ATCTC A . . . . . . . G . . . . . T A T . . . . . . . . . A . A G A . . ACA . G . . T . TAA . GAAGACAATATCACGAGATGC . T T . . . . . A . . . . A . C . C . . . A . . . . G . . A . . TC . . . . . . . . . A . . . . . . . . . . . . . C . A . . C . . . . . . CCAATTTT . . . . . . . TT . . . . T TA . . . . . . . . .
blockSeqs : A . . . . . . AG . . . . . . . . . A . . . T T . T TT . . . . . . C . . . . G . . . . . TG . TT . . A . . . . C . . . . . . . . . . . . A . . C . AT . . . . . . . . . . G AAG . . . . . GATAAA . . . . . . . . . . . . . . . . C . . ATTA . . . . . . . . . . C GCG . . A . . . . . . . . . . . . AG . TT . . G . . . . . C . . A . . . . . . . . . C . . . . . . . . . . . . . CA . . . . . . . . . . T . . . . . . . . T . . . . . . . ATT . . A . . . . . A . A . . . . G . . . . CCTT G . . . . . . . G . . . . . T A T . . . . . . . . . A . A G A . . AC . G . . T . TAA . TGACATTACCAGATGATTT . T T . . . . . . . . . . A . . . . . C . . . . . . . . . A . . . . . . . . . . . . . C . A . . . . . . . . . TGGT . . . . . . . T . . . . T TA . . . . . . . . .
blockSeqs : C . . . . . . GT . . . . . . . . . . . . . A T . . TT . . . . . . C . . . . . . . . . . TG . TT . . A . . . . C . . . . . . . . . . . . A . . . . AT . . . . . . . . . . G . . . . . . ATG . . . . . . . . . . . . . . . . C . . AAT . . . . . . . . . . A GG . . A . . . . . . . . . . . . A . T . . G . . . . . A . . A . . . . . . . . . C . . . . . . . . . . . . . CA . . . . . . . . . . T . . . . . . . . . . . TTC . . A . . . . . . . . . . . . . . . . . CTTT G . . . . . . . G . . . . . T A T . . . . . . . . . A . A G A . . AC . G . . T . CA . GAGCATGATATACCAGATG . A . . . . . . . . A . . . . . A . . . . . . . . . A . . . . . . . . . . . . . . . T . . . . . . . . . TGG . . . . . . . T . . . . T TA . . . . . . . . .
blockSeqs : C . . . . . . AG . . . . . . . . . . . . . T T . . T . . . . . . C . . . . . . . . . . TG . TT . . A . . . . C . . . . . . . . . . . . A . . . . T . . . . . . . . . . G . . . . . . AGA . . . . . . . . . . . . . . . . C . . A . . . . . . . . . . A GG . . A . . . . . . . . . . . . A . T . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CA . . . . . . . . . . T . . . . . . TCTT . . . . . . . . . . . . . . . A G . . . . . . . . . . . A . . . . AC . A . . . . T . GACATTACCAGATG . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TAG . . . . . . . T . . . . T T . . . . . . . . .
blockSeqs : C . . . . . . GT . . . . . . . . . . . . . G T . . T . . . . . . C . . . . . . . . . . TG . TT . . A . . . . A . . . . . . . . . . . . A . . . . A . . . . . . . . . . T . . . . . . AA . . . . . . . . . . . . . . . . C . . A . . . . . . . . . . . GG . . . . . . . . . . . . . . . A . T . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . CA . . . . . . . . . . T . . . . . . ATG . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . T . . . . . . . . G . . . . . . . . . . . . .
blockSeqs : C . . . . . . GT . . . . . . . . . . . . . T . . . T . . . . . . C . . . . . . . . . . TG . T . . A . . . . A . . . . . . . . . . . . A . . . . T . . . . . . . . . . C . . . . . . AA . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . GG . . . . . . . . . . . . . . . A . T . . G . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . .
blockSeqs : C . . . . . . G . . . . . . . . . . . . . . . . . T . . . . . . C . . . . . . . . . . TT . T . . A . . . . A . . . . . . . . . . . . A . . . . A . . . . . . . . . . A . . . . . . AA . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . C . . . . . . . . . . . . C . . T . . . . C . . . . . . . . . . . . A . . . . T . . . . . . . . . . T . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . . . . . . C . . . . . . . . . . . . T . . . . . . . A . . . . . . . . . . . . A . . . . A . . . . . . . . . . T . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . TA . . . . . .
blockSeqs : . .
blockSeqCons : TT* N* A* N* AA********************** ATA**** ** GG************ ** A******* T* G* ** CA**** ** T****** ** TTT*** A****** A** G* CTTC**** ** *** A** TAA GAGACGATATCACCAGATGC*********** ** A**** A** ** TA*** ** **** ****** C* ** TCCAATGT***** ** **
originalCons : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--C-T-AC--A-TGT-A---T-G-AG-A-CATTTCATGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTAACA-T--C-GG-TCTATTATTTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-G-T--A-----------TAAA------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAAC-A--TTAAATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAA----------GG-GAGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-----A-TA--GCTTGTTGTG---ATA-AGTTGCTGTGGTTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTT---CATC--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGAACAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG--TAATT-AA-TGCTT-ATTTTTATT-AA-AG-TGGTA-----AATTCCAA-TGGA--C-AAA-ACA-TAAATTT-A-C-AGTTTTTATTGAAAATCAAAAAACGGAGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATACC--TGCGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTCAAAAA-A-TCTTTGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAAGACG--ACAT-TACC-GA-G-ATTG-CGCA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGNGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TGAAT-GGTTT--TGA-C---AAAAA--ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--C-TCAA-A--TT--CAA---TTG-TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
finalCons : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-T-A-AAA--G-AG-TG-CAGAATTTTGCTTGGTC-ATA--TT-----------T-GAA-TCA-TTTT-GAGA--AAT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTATA---AAAA-TGA--CTT-AC--A-TGT-A---T-G-AG-A-CATTTN-TGTGAAA--TGTGA-A--CAAGA-T--TAT-A-AG-ATCGAA-A-TTC-ATACTT-TATTTA-CA-T--C-GG-TCTATTN-TTTACGG-AG-TAGC--CC-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---AT-GT--T---ATT-G-TAA----------------------TGC-GC--------AT-TTAA-GC-TCG-AAACG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAA-CAAAGTTTTC-CTTG-TT--GATC--TA-ATCG-TAAACATA----AATTAA-TCT----TG-TTATGAAAC--GATCAAC-G--AAAG-TGCAA-GAAAACT-G-GCAAAAAGG------------AGAGCA-C-ACTAAAATG-GTA--A-ATACAA-TA--TAA-CAGTAAACAG-TA--GA-T-AT---TATT--TATTCCA-------TA--GCT-GTTGTG---ATA-AGTTGCTGTG-TTTTTGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TTTCA----C--GAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTGT------TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGAACAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG--TAATT-AA-TGCTT-ATTTTTT---AA-AG-TGGTAA------TTCCAA-TGGA--C-AAA-ACA-TAAATTTA--C-AGTTTTTATTGAAAATCAAAAAACGG-GAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAATCTTC----GGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTCAAAAA-A-TCTTTGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGGA--GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAG-ATTGAGACGATATCACCAGATGC-----------CA-GAAGAA-T--AAA-TGC-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGNGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TGAAT-GGTTT--TGATA---AAAAA--ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CAC-CAGTACC-G-GTA--C-TCAA-A--TTCCAATGT-----TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): TGTGTATTAAAAAATTGTTATATGTAATTACAAAAAGATTAAATCATCTTTGCTGCATTGTGAGGACATTACATGTACTGTAAGGATCGTAAAGTCACATTGCTACACATACATAAAACTGTACGTAGAACTGTACATATT
Unaligned ( gi|32 ): CTTTAGATATTAGCTGAAAACTCATGGGTTAATCCCAAATTAAATC
Unaligned ( gi|33 ): CAGGGGCGGATCAGGAATTCTGGTGGGGGGAGGGGGGC
Unaligned ( gi|34 ): AAATGACTGACATTTCAAGCAACTGTTTACTA
Alignments
lowQualScore : 111111 111 111111111 22 1 11 11111111111111 1111111111111 22222222222222 222222 1 11 222 55555555555555555555555555555 111111 1111111111 333333 1111 11 22222222222222 1 11 222222 11 2222222 1 111 11 11 11111 11 222 777777777777777777777777777777777777777777777777777777777777777777777777777777 111 1 1 222 1 111111 111 1 22 111 11 2222 222222 1111 111 11 111 111 1 111111 22222222222222 1111 1111111 1111 1 11 1 1 55555555555555 11 111 1 1 1 33333 111 1 2222 222222222222 1111 222222 111 11 4444444444444 1111
lowQualScore : 1 000000 7 3 55 3 44 444 3 222222222 3 555 777 3 3 3 22 3 3 3 3 3 6 3 66 66666666666666 6 6 44 3 44 6666666666666 11111111111111 555 44 6666 000000 6 77777 3 3 3 555 3 0 3 2 3 66666 3 3 6 3 3 1 44 3 44 3 44 3 3 3 6 3 3 3 3 6 6 0 44 6 0 888 6 3 3 44 3 3 3 3 3 6 555 55 111 44 44 3 8888888888 44 55555555555555555555555555555 3 888 3 3 3 3 3 000000 5555555555 3 3 3 3 3 55 888 3 3 333333 3 1111 0 33 8 55 4 4 4 4 4 11111111111111 4 4 4 66 4 4 66 4 3 4 00 4 4 777 66 333333 4 00 8 777 4 4 8 4 4 2222222 4 66 888 1 5 5 1 5 5 66 5 5 4 4 1 4 66 55 4 4 4 4 55 8 4 4 55 55 8 8 6 4 111 8 3 3 00 3 3 3 7 55 7777 8888888 7 3 7 22 00000 4 11 000 1 888888888888888888888888888888888888888888888888888888888888888888888888888888 777 11 0 6 5 99 6 6 6 000 6 6 3 6 999999 6 6 99 6 6 6 6 222 6 1 55 1 6 000 6 99 6 33 5 0000 5 5 5 5 5 0 000000 5 5 5 5555 66 88 777 6 888 5 5 0 333 5 11 5 5 5 3 333 222 2 3 5 1 333333 5 1 5 888 3 66 888 99999999999999 0000 3333333 777 3333 5 88 5 5 66 5 0 5 0 1 33 0 3 0 88888888888888 33 7 777 2 0 0 0 6 55555 8 6 6 000 99 6 1 6 99 4444 6 6 6 5 77 5 5 5 77 5 55 77 999999999999 77 5 5 5 5 5 5 5 2222 5 0 5 3 5 1 444444 000 77 0 5 5 77 5 5 5 3333333333333 5 66 0 5 5 5 5 5 2222 5 5 5 66 2 3 33 5 5 5 5 5 5 66 77 5
lowQualScore : . ...... . . .. . .. ... . ......... . ... ... . . . .. . . . . . . . .. .............. . . .. . .. ............. .............. ... .. .... ...... . ..... . . . ... . . . . . ..... . . . . . . .. . .. . .. . . . . . . . . . . . .. . . ... . . . .. . . . . . . ... .. ... .. .. . .......... .. ............................. . ... . . . . . ...... .......... . . . . . .. ... . . ...... . .... . .. . .. . . . . . .............. . . . .. . . .. . . . .. . . ... .. ...... . .. . ... . . . . . ....... . .. ... . . . . . . .. . . . . . . .. .. . . . . .. . . . .. .. . . . . ... . . . .. . . . . .. .... ....... . . . .. ..... . .. ... . .............................................................................. ... .. . . . .. . . . ... . . . . ...... . . .. . . . . ... . . .. . . ... . .. . .. . .... . . . . . . ...... . . . .... .. .. ... . ... . . . ... . .. . . . . ... ... . . . . ...... . . . ... . .. ... .............. .... ....... ... .... . .. . . .. . . . . . .. . . . .............. .. . ... . . . . . ..... . . . ... .. . . . .. .... . . . . .. . . . .. . .. .. ............ .. . . . . . . . .... . . . . . . ...... ... .. . . . .. . . . ............. . .. . . . . . . .... . . . .. . . .. . . . . . . .. .. .
lowQualScore : 4 555555 3 6 00 3 22 222 1 333333333 1 000 999 1 1 1 77 1 1 1 1 0 1 1 55 00000000000000 2 2 22 1 22 5555555555555 22222222222222 444 22 5555 444444 2 77777 1 1 3 888 3 4 3 4 3 44444 3 3 7 3 3 0 66 3 66 3 66 3 3 3 7 3 3 3 3 7 7 0 66 7 4 999 7 3 3 66 3 3 1 1 1 2 444 22 555 22 22 1 9999999999 22 44444444444444444444444444444 3 555 1 1 1 3 3 555555 9999999999 6 6 6 6 6 00 666 6 6 999999 6 4444 8 55 0 55 0 0 0 4 4 88888888888888 4 4 4 11 4 4 11 4 3 4 66 4 4 888 11 333333 4 66 9 888 4 4 9 4 4 2222222 4 11 888 4 7 7 7 0 0 99 0 0 4 4 9 4 11 66 4 4 0 0 55 0 0 0 55 55 0 0 0 0 000 0 6 6 00 6 6 6 3 00 7777 2222222 3 6 3 33 00000 0 00 000 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 000 88 6 0 5 22 7 7 7 888 7 7 3 7 222222 7 7 22 7 7 7 7 555 7 3 88 0 7 222 7 22 7 00 0 4444 0 0 0 0 0 4 111111 0 0 0 6666 99 22 111 2 888 0 0 4 888 0 99 0 0 0 2 888 000 5 2 7 4 444444 0 4 0 888 2 99 666 11111111111111 6666 2222222 111 0000 0 22 0 0 99 0 1 0 0 0 22 0 2 0 22222222222222 88 0 555 5 5 0 0 0 66666 0 7 7 888 22 7 7 7 22 2222 7 7 7 7 99 7 7 7 99 7 99 99 333333333333 99 7 7 7 7 7 7 7 1111 7 7 7 0 7 7 333333 000 11 7 7 7 99 7 7 7 4444444444444 0 99 4 0 0 0 0 0 8888 0 0 0 99 5 2 88 0 0 0 0 0 0 99 99 7
consensus : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-TA-AAAA-G-AG-T-G-CAGAATTTTGCTTGGTC-ATA--TT-----------T--GAA-TCATTTT-GAGAA--AT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTAT-AAA---AA-TGA-CTTACA-TGT-A---T-G-AGA-CA-T-TTATGTGAAA--TGTGA-A--CAAGA-T--TATA-A-G-ATCGAA-A-TT-C-ATACTT-TATTT-ACA-T-C--GG-TCTATT--NTTT-ACGG-AG-TAGCC--C-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---ATGT--T--ATT-G----T-----AATG--CG--------------------C--------AT-TTAA---GCT-CGAAA-CG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAAC-AAAGTTTTC-CTT-G-TT--GATC--TA-ATCG-TAAACA---T-AAATTAA-TCTTG----TTATGAAAC--GATCAAC-G--AAAG-T-GCAA-GAAAACT-G-GCAAAAA-----------G--GAGAGCA-CA-CTAAAATG-GTA--A-ATACAA-TA--T-AA-CAGTAAACAG-TA--GA-TA-T---TATT--TATTCCA------T-A--GC-TGTTGTG---ATA-AGTTGCT-GT-GTTTT-TGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTT-T---CA-CGAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGAACAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG--TAATT-AA-TGCTT-ATTT---TT-TAA-AG-TGGT-A------AT-TCCAA-TGGA--C-AAA-ACA-TAAA-TTT-A-C-AGTTTTTATTGAAAATCAAAAAAC--GGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAAT-CTT---NGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTCAAAAA-A-TCTTTGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAGATTG-AG-ACGACAT-TACCAGA----TG---C--AAG-A-AGAA-T--AA-A-TG-C-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGNGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TGAAT-GGTTT--TGAC--AAAAA-A-ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--C-TC-AA-ATTCC--AA-TGT--TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
Reference ( family-1008 ) : GGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-TA-AAA--G-AG-T-G-CAGAATTTTGCTTGGTC-ATA--TT-----------T--GAA-TCATTTT-GAGAA--AT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTAT-AAA---AA-TGA-CTTACA-TGT-A---T-G-AGA-CA-T-TTNTGTGAAA--TGTGA-A--CAAGA-T--TATA-A-G-ATCGAA-A-TT-C-ATACTT-TATTT-ACA-T-C--GG-TCTATT--NTTT-ACGG-AG-TAGCC--C-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-NTC---ATGT--T--ATT-G----T-----AATG--CG--------------------C--------AT-TTAA---GCT-CGAAA-CG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAAC-AAAGTTTTC-CTT-G-TT--GATC--TA-ATCG-TAAACA---T-AAATTAA-TCTTG----TTATGAAAC--GATCAAC-G--AAAG-T-GCAA-GAAAACT-G-GCAAAAA-----------G--GAGAGCA-CA-CTAAAATG-GTA--A-ATACAA-TA--T-AA-CAGTAAACAG-TA--GA-TA-T---TATT--TATTCCA------T-A--GC-TGTTGTG---ATA-AGTTGCT-GT-GTTTT-TGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCGTTTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TT-T---CA-CGAATTTTAGAAT-T-A--TTTCAAGGG-AAT-GTCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AATGGAACAAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATTTAAACTGTTTAG--TAATT-AA-TGCTT-ATTT---TT-TAA-AG-TGGT-A------AT-TCCAA-TGGA--C-AAA-ACA-TAAA-TTT-A-C-AGTTTTTATTGAAAATCAAAAAACG-GGAGATCTT-GAA--GATC-TGA--TAC-AATTATTCAAAAAAT-CTT---CGGAGAAGC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA-CAA-A----TTT--AAAA-TTCAAAAA-A-TCTTTGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-NAATG-TATGC-TAA---GATTTC--AATTAAATAAGAGATTG-AG-ACGATAT-CACCAGA----TG---C--CAG-A-AGAA-T--AA-A-TG-C-ACA--TTTGTGAAT-CTAAAT-A-TTGCTTCATATTGNGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCGTATT-TGCAATAT-GTGCACATTGAGA----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TGAAT-GGTTT--TGAT--AAAAA-A-ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATAC------TAT---CA-CCAGTACC-G-GTA--C-TC-AA-ATTCC--AA-TGT--TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAAT
gi|1 : GGGTCACGTGACCC-GTCTAT------T-GGTTAA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCTACGCT-AA-TA-AAA--G-AG-T-G-CAGAATTTTGCTTGGTCTATA--CT-----------T--GAA-TCATTTT-GAGAA--AT-AT--GA------C-------GAA--------------AAAC---T--AC----T------ATTATT-G-----A-T-TATTTAT-AAA---AA-TCA-C-TA-A-TGT-A-----G-AGA-CCTT-TTATGTGAAA--TGTGA-A--GAAGA-T--TATA-A-G-ATCGAA-A--T-C-ATACTTATATTTAACA-T-C--GG-TC-ATTTATTTT-CCGG-AG-TAGCC--T-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTT-TTC---ATGT--T--ATTCG----TCGATAAATG--CG-----------------------------AT-TTAA---GCT-CGAAA-CG-A-TGTAAAT-GC------GGGAATA-ATT----------AGA-TTAAC-AAAGTTTTC-TTT-G-TT--GATC--TA-ATCG-TAAACAGTTT-AAATTAA-TCTTG----TTATGAAACA-GATCAACTG--AAAG-T-GCAA-GAAAACT-G-GCAAAAC-----------GGAGAGAGCA-CA-CTAAAATGCGTA--A-ATACAA-TA--T-AATCAGTAAACAG-TA--GA-TT-T---TATTTATATTCCAAG----T-A--GCTTGTTGTG---ATA-AGTTGCT-GTGGTTTT-TGT-ATGT-------GAAAAA-AAA--CCCG---ACAACAATA--C-AAGAC-ACG--TGT-AA-GAG-GG-T-CAT-GGG--TC-CA-TCGTTCAC-TTGAA-CA-AC--TTA-TCAAC-C-G--CTTACG-A-TTG-TT-T---CATCGAATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--TT----TTG-------TGT-TT-T-AAT--ATA-----TCT-TTATTACCAA--AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAA--ATATAGACTGTTTAGTTTAATT-AA-TTTTTCATTG---TTATAA-AGTTGGCAA------AT-TCCAA-TGGA--C-AAACACA-TAAA-TTT-ATC-AG-TTTGATTGAAAATCAAAAAACGAAAAGATTTT-GAA--GATC-TG---TAC-AATTATTCAAAAAATACCTGTGTGGAGAAGC-A-CA--TTGAAATT-TACAAAATTCTT---ATTG-GAAA-CAA-A----TTT--AAAA-TTCAAACA-A-TCTT--G---AGAAA-C-AATTTA---T-ATT--GAAGTTCTTG-GACGA-ATTG--GCCTTGG-AGGATAGTCAAGCAA-T-TAG---A-AAATGTTAT-C-TAA---GA-TTC--AATTAAA-AAGAGATTG--G-A----AT-TACC-GAGCATTG---CCACAG-A-AGAA-C--AA-A-TT-C-ACAACTTTGTGAAT-CTAAAT-A-TTGCTTCATATGCCGA-AAATTCCAA-CAGCGTT--------------TTTT--A-TT---A-CGTATTATGCAATATAGTGCACATTGAGAATCTATCATGTTT-ATTTT-GAAAG-AC---GTTAA-TGTAT-GGTTT--TGAC---AAAA-A-ATG-ATAA-T--GC-A--TTG---TGAACA--GTCAAG-TGGTAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATC-TCGTAGCGATATCTGGTGGTTT-TATACAA----TAT---CA-CCAGTACCTGCGTACCC-TC-AAGAT-----AACTGT--TTGA-TAATCTAAAG-G-ACAA-C-TAGTA--T-TA-TA-TTAA-AC--T-CAAT-AGG-AAGAACAA-CA-C------AA-T-GATAAACCA--CAACAATAAT
gi|10 : GGGTCACGTGACCCCGTCTAT------T-GGTTTATCT--G-TTC--AGTTAAAG---TGGCGC------------GGG-TAGCGC----T---GATATGA-TCTACGCT-AA-TA-AAAAAG-AG-T-GGCAGAATTT-GCT-GGTC-ATA--TT-----------T--GAAGTCAGTTT-GAGAA--A--AT--GAT-----C-------AGAG-------------AAAC---T--AC----T------TATACTCG-----A-T-GATTTAT-AAT---AA-AGA-CTTGCA-TGT-A---TCGTAGA-TA-T-TTATGTGAAA--TGTGA----CAAGAAT--TA-A-A-G-CTCGAATA-TT-CTATACTT--ATTT-ACA-T-CC-GG-GCTATT--ATTT-ACGGTAG-TCATC--C-G-AGAAGATTACGACTTGC----TGA-AG---TTT-TTC---AGGT--T--ATT-G----G-----TATGTCCG--------------------C--------AT-TTAA---GCT-CGAAA-CG-AGTGTAA-T-GC------GG-AATATTTT----------AGA-TTAAC-AAAGTTTTC-TTT-G-TT--GAT--------------------T-GAATTAA-TCTTG----TTA-GAAACA-GATCAAC-G---AAG-T-CCAA-GAAAACT-G-GCAAAAA-----------G--GAGAGCA--A-CT-AAATG-GT---A-ATATAT-TA--T--A-CAGTAAACAG-TT--GA-TA-TTAATATT--TA-TCCA------T-AG-GC-TGTTGT----ATATAGTTGCTGGT-GTTTT-TGT-ATGT-------GAAAAA-AAA--CCCC---ACt
gi|11 : cgTCAAAAAAT-CTT---GCGAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT------G-GAAA-CAA-A----TTT--AAAA--TAAAAAA-A-TCTCTGG---AGAAA-C-AAATGA---T-ATT--G-CGTTCTTG-GA-GAC-TT---GCCTTGGCC-GATA-TC-AGCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAGATTGAAG-ACAATAT-CACGAGA----TG---C--CAG-A-AGAA-T--AA-A--G-C-ACA--TTTGTGAAT-CTAAAT-ATTTGCTTCATATTGCG--AAATT-C-A-CAGCGTT-------------ATTTTTAATTTTAAACC--AAT-TGCAATAT-GTGCACATTGAG-----ATCATTGAT-ATTTT-GAAAG-ACA--GT--A-TGAAT-CGGTT--TGAC--AAAAA-A-ATGAACAG-T--GC-ATTTTG-TTTGAA-A--G-CAAATT--TAGAA------------TAA--TTAAA-ATAGT-G-CACC-ATA-T-GT----ATA-CTCGT-GT-T-CATAC------TCT---CA--CAGTA-C-G-GTA--CTTC-AA-AT--------TGG--TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TATTTAA-AC--TCCAATCAGGT--TTAAAT-CT-CTG-TA-AA-T-A--AGACCA--C-ACAA
gi|12 : cgacacacaGGGCCACGTGACGCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-GT-GGCGC-CA---------GGG-TAGCGC---CT---TAAATGAATCTACGCT-AA-TA-AAAA-G-AG-T-G-CAGAACTT-GCTTAGCC-ATA--TT-----------TT-GAA-TCATTTT-GAGGA--ATGATAAGAT-----ATTTTAAAAAA--------------AAACAAAC--AC----CA-----TATATT-G-----A-T-TATTTAT-AAA---AA-TTA-CTTACA-TGT-A---T-T-AGA-TA-T-TTCTGACAAA--TATAA-A--CAAGA-C--TATA-A-G-ATCGAA-A-TT-C-ATACTT-TATTT-ACT-TCC--GG-TATATG--TTTT-ACGG-AG-AAGCC--C-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGATGT--T--AGT-G----T-----AACG--CGCTCAAAGAAAGGTAAA----C--------AT-TTAA---GCT-CGAAA-CG-A-TGTAAAT-GC------GGGAATATCTTAAACTAACAAAGA-TTAAC-AAAGATTGT-CTT-A-TT--GATC--TA-TTCG-TAAAC------AAATTAA-TCTTG----TTATGAAAC--GATGAAC-G--AAAG-T-GCGT-GAAAACatacatgtt
gi|13 : cgGAAGGGAAGAATTTAAACTGTT-AG--TAATTTAACTGCTT-AATTCTATT-CAA-AG-TGGT-A------ATCTCCAA-TGGAACC-AAA-ACA-TAAT-TTT-A-CCAGTTTTTACTGAAATGCACAAAACC-GGAGATCTTTGAA--GATC-TGA--TACTAATCA---AAAAAAT-CCT---TGGAGAAGCCA-CAATTTGAAA-T-TACAAAA-TCTT---G--G-GAAAACAATA----TTTTAAAAA-TTCAAAAA---TCTTTGG---AGAAATC-AAATTA---TTATTT-G-AGTTGCTGTGA-GACATTTGTGCCTTGG-A-GATAGTCAAGCAC-T-TAGACAA-GAATG-TCTGCTTAAAATGATTTCAGAGTTAAAAAAGACATTG-AC-ACT-TA--AACAAGA----TG---C--AAGTATAGAATT--AACA-TGCC-ACA--TCT-T----------T-A-TTGCTTCgga
gi|14 : agacagagagagagagaGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCAC-CA---------GGG-TAGCGC---CT---CAAATGAATCTACGCT-AA-TATAAA--A-CG-T-G-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T--GAA-TCATTTT-GAGAT--AT-AT--GAT-----C-------AGA--------------AAAC---TCAAT----TCAATTCTATACT-G-----A-T-TATTTAT-AAA---AA-TGA-CTTACA-TGT-A---T-G-AGA-CA-T-TTCTGTGAAA--TAATA-A--CAAAA-T--TATA-A-G-ATCGAA-ATTT-C-ATACTT-TATTT-ACATT-C--GG-TCCATT--TTTT-ACGG-AG-TAGCC--C-G-AGAAGAT-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGATGT--T--ATT-GTAATT-----AATG--CG--------------------CATTTAATGAT-TTAA---GCT-CGGAA-CG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAAC-AAAGATTTC-CTT-G-TT--GACC--TA-ATCG-TAAAC------AAATTAA-TCTGG----TTAcaggtcagaatccaggaaatttctggttagtggggggggggggggggc
gi|15 : cgg---GCT-TGAAA-CG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAAC-AAAGTTTTC-CTT-T-TT--GATC--TA-ATTG-TAAACA------AATTAA-TCTTG----TTATAAAAC--GATCAAC-G--AAAG-T-TCAA-GAAAACT-C-GCAAAAA-----------G--GAGATCA-CA-CCAAAATG-GTA--A-ATCCAA-TA--T-AA-CAGTAAACAG-TA--GA-TA-T---AATT--TATTCCATACATGT-A--GC-TGTTGTG---ATA-AGTTGCT-GT-GTTTT-TGT-ATGT-------GAAAAA-AAA--CCCA---ACGATATTA-TT-ATTAC-A-G--TGT-AA-GA-----------GGG--TC-CA-TTGTTTAA-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTGTTT-T---CA-CGAATTTTAGAAT-T-A--TTTCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTATTGACAA--AA---AACAAAACAA
gi|16 : -T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAATACATGTACATGTAA--TTAAA-AT-GT-GACA-C-ATACT-GT----ATA-CTGGT-GTCT-CATAC------TATCCCCA-CTAGTAAC-C-GTA--C-TC-AA-ATTTCCAAA-TGTTCTTTG-T--TCAAACG-GAACCACC-TA-TA--T-TA-TA-TTAA-AC--TCCAATCA-CTATTAAAAA-CT-CTGATA-AA-A-A--AACCCA--C-ACAaacaaaaaaggagagagagagaagagattgactgtt
gi|17 : CC--AA-AGT--TTTG-T--TTAAACG-T-ACCC-C-TA-TA--TGTA-TA---AATAC--T-CAATCAGGTAATT-AAA-CTGCTG-TA-AAGTAA--AAACCA--T-tgcatggtaaaatggaacccacaataataataaatatatattaggatgtagaattagatactagcaaatcatggcgttaaactcctttagaagcaaagactcactatcaccaagtgatggactttcatattctttcttgaattgttggcaaattgtgctatattcttaattaaattcgttatgaaagatgtgaatttcaaaaatgatctaaa
gi|18 : AGCGC---CT---GAAATGAATGTACGCT-AA-TA-AAA--GGAG-T-G-CAGAATTT-GCTTAGTC-ATA--TT-----------TT-GAA-CCATTTT-GAGAA--AT-----GAT-----C-------AGATATTTCAATGAACAAAAC---T--AC----T------TATATT-G-----A-T-TATTTAT-AAA---AAATTA-CTTACA-AGT-A---T-T-AGA-TA-T-TTCTGACAAA--TGTGA-A--CAAGA-C--TTTA-A-G-ATCGAA-A-TT-C-ATACTT-TATTT-ACATT-C--GG-TCTATT--ATTT-ACAG-AG-TAGCC--C-G-AGAAGAC-GCGACT-GCAT-CCGA-AG---TTT-GTCAAGATGT--T--ATT-G----T-----AACG--CGCTCTTGTAAAGAAAAGTGAAC--------AT-TTAA---GCT-CGAAA-CG-A-TGTAAAT-acatgtacatcaatagaacccacaaataaataatatattggaatgatacatattaggatgtacgaaatttagaggagcaagcaggcgtttaacctctttagagaaggcaagactgcactatcaccataggtgataggacttcgatactcgtcattgtcgatagggaggtagttgtgttctgcagaaattgcgctaaatagtaatatcttacattaaagtcacatatgatagatgtgaatttcaaaaatggtctaaaatgactt
gi|19 : GGGTCACGTGACCCAGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-AGTGGCGG-AG---------GGG-TAGCGC---CC---GAAATGAATCTACACT-AA-TA-AAAA-G-AG-T-G-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T--GAA-TCGTTTT-GAGAA--AT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTAT-AAA---AA-TGA-CTTACA-TGT-A---T-G-AGA-CA-T-TTCTGTGA--------A-A--CAAGA-TAATATA-A-G-ATCGAA-A-TT-C-ATACTT-TATTT-ACA-T-CT-GGTTCTATT--TTTT-ACTG-AG-TAGCC--C-G-AGAAGAT-GCGACT-GTAT-CCGA-AG---TTT-GAC---AAG----------------------ATG------------------------------------TTAA---GCT-AGAAA-CG-
gi|2 : acgGGGTCACGTGACCCCGTCTAT------TTGGTTTA-CTTGG-CTCTCAGTTAAA--GTTGGCGCGCG---------GGG-TAGCGC---CTTAAGAAATGAATCTACGCT-AA-TA-AAAA-G-AG-T-G-CAGAATTCTG-TTGGTC-ATAGTTT-----------T--GAAATCATTTT-GAGAA--AT-AT--GAT-------------AGA--------------AAAC---T--ACCTTAT------TAT-TT-G-----A-T-TATT-AT-AAA---AA-TGAACTTACA-TGTCA---T-G-AAA-TA-TGTTATGTGGAAATTGTGA-A--CAAGA-T--TATA-A-G-ATTGAACA-TT-C-ATACTT-TATTT-ACA-T-CC-GGCTCTATT--ATTTTACGG-AG-TAGCC--C-GCAGAAGAT-ACGACT-GCAT-C-GA-AG---TTT-TTC---ATGT--T--ATT-G----T-----AATG--CG--------------------C--------AT-TTAAA--GCT-CGAAA-CG-A-TGTAAATTGC------GGGGAAATTTT----------AGAATTAAC-AAAGTTGTC-TTT-G-TTTGAATC--TA-ATCGCTAAATA---TTAAATTAAATCTTG----TTATGAAACACGATCAAC-G--AAAGCT-GCAATGAAAACTTG-GCAAACG-----------G--GAGAGCAGCA-CTAAAATG-GTA--A--TACAA-TAGAT-AAACAGTAAACAG-TATAGA-TA-T---TATT--ATTTCCA------T-A--GC-TGTTATGTTGGTA-AGTTGC--GT-GTTTT-TGTCATGTTGA----AAAAAA-AAA--CACG---ACAACAATA-TT-A-GAC-A-G--TGTTAACGAGCGGCTCCATAGGG--TC-CA-TCGTTTAC-TTGAA-CAAGC--TGA-TCAAAAC-G--TT--CGCA-ATG-TTCT---CC-CGAATTTTAGAAC-T-A--TTTCAAGGG-AAT-GTCAAGTT-TCTTGA--TTTTGCTTG----T--TGT-TT-TGAAT--ATA-----TCT-TT-----------ATGGACCAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAC--ATT--AACTG-TTAG--TAATT-TA-TGCTT-ATTTTA-TT-TAACAGTTGGT-A------AT-TCCAA-TGGA--CAAAA-ACA-TAAA-TTT-A-C-AGTTTTTATTGAAAATTCAAAAAC--GGAGATATT-GAAAGAATCTTGACTTAC-AACT-TTCAAAAAAT-CTT---TGGAGAAGC-ACCA-TTTGAAA-TCTACAAAAATCTTGGAG--G-GAAA-CAC-ATTGGTTT--AAAATTTCAAAAACA-TCTTTGGAGAAGAAA-CAAAATTAATTT-ATTTGG-AGCTGATT-GA-GACATG---GCCTTGG-A-GATAGTCAAGCACTT-TAG---ACAAATG-TATGC-TAA---GATTTC--AATTAAATAAGAGATT------TGACAT-TACCAGA----TGATTT--AAG-A-AGAATT--AA-ATTG-C-ACA--TTTGTGAAT-C--AATAA-TTGC
gi|20 : acgGAATTTTAGAAT-T-A--TTACAAGGG-AAT-ATCAGGTT-TC-TGA--TT----TTG----T--TGT-AT-T-AAT--ATG-----TC--TAATTGA
gi|20 : AGAGAA-----TAA-CTGAT-AG--TACTC-AA-TGTTT-ATTT---TT-TGA-AA-TGGT-A------AC-TCCAG-TGGA--C-AAA-ACA-T--A-TTTGA-C-A-TTTTTATTGAAAATT-AAAAAC--GGAGATCTT-GAA--------AA--TAC-AATattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatagagaataactgatagtactcaatgtttattttttgaaatggtaactccagtggacaaaacatatttgacatttttattgaaaattaaaaacggagatcttgaaaatacaat
gi|21 : gaattttagaattattacaagggaatatcaggtttctgattttgttgtattaatatgtctaattgaattcgttgattttggctattgttaagacgtcctcttttcgtactttgaaaatgactgacatttcaagcaactgtttaccatgaattttgacgaccggtatacatgtatttcctggacaaaaatTTGAGA----TCTATGTTTTATTTTTGAAAG-ACAAGGT--AGTGAATTGGTTT--TGATCTAAAAA-ATATG-ATAA-TTGGCGATTTTG-TTTGAA-ATTG-CAAA-T----GAA------------TAA--TCAAA--T-GT-GACA-CGATA-T-GT----ATA-CT-------T-TAT----------C---CA-CTAGTACC-G-GTA--C-TC-AA-ATT-------GGT--TTTGTT--TCAAACGTG-ACCA-CTTA-TAT-T-TATTA-TCAA-ACATTCCAATCAGG-AAT--AAT-CT-CTG-TATAA-T-A--
gi|22 : TCAAAAAAT-CTT---GCGAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT------G-GAAA-CAA-A----TTT--AAAA--TAAAAAA-A-TCTCTGG---AGAAA-C-AAATGA---T-ATT--G-CGTTCTTG-GA-GAC-TT---GCCTTGGCC-GATA-TC-AGCAC-TATAG---A-CAATG-TATGC-TAA---GATTTC--AATTAAAT--GAGATTGAAG-ACAATAT-CACGAGA----TG---C--CAG-A-AGAA-T--AA-A--G-C-ACA--TTTGTGAAT-CTAAAT-ATTTGCTTtatagggaccatcacattacatgtaaaa
gi|23 : acaT-GAAAGGACG--AG--A-TGA-T-GGTTTGCCAATC-AAAAATA-ATG-ATAACT--GC-ATTTTGGTTTGAA-A--G-CAA--T--TAGAA------------TAT--TTAAA-AT-GTTGACA-C-ATA-T-------ATA-CTGGT-GTCTGCATAC------TAT---CATCCAGTACC-G--TA--C-TC-AA-ATT----AG------TTTG-T--TC-AACG-G-ACCA-C-TA-TAATC-TA-TA-TTAA-A---TCCAATCAGGTAATTAAAATCT-CTG-TA-AA-T-A--AGACCACCC-ACAATA
gi|24 : CATGATCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTCAAAA-G-TGGCGC-CG---------GGT-AAGCGC---AT---GAAATGAATTTACGCT-AATTC-AAA--C-AG-T-G-CAGAA-TTTGCTTGGTC-ATA--TTTTGAATGTTTAT--GAA-TCATTTT-GAGAA--AT-TT--TAT-----C-------AGA--------------AAAC---G--AC----C------TATATT-G-----A-T-Tca
gi|25 : G-GA-TCCAT-GGG--T---------TTAC-TTGAA-CA-GC--TGACTTAAC-C-A--TT--CG-A-TTGTTT-T---CA-AGAA-TTTAGAAT-TAA--TTACAAGGG-AATAGCAAAGTT-TC-T----TT----TTGATTTT--TGT-TTGTAAATA-ACG-----TCT-TTATTGAgagatgaaaaatta
gi|26 : -A-G--TGT-AA-GAG-AG-TTCAT-GGG--TC-CA-TTGTTTAT-TTGAA-CA-GC--TGA-TTAAC-C-T--TT--CG-A-TTGTTT-T---CA-AGAATTTTAGAAA-T-T--TTACAAGGA-AAT-AGCAAGTT-TC-TGA---T----TTG----T--TGT-TT-G-AAT--ATGCAGTATTT-ATATTGAattcgttgattttggcatcgttaagacgtcctctttttc
gi|27 : A-CA-GC--TGA-TCAAC-C-G--TT--CG-A-TTG-TT-TT--CA-CTAATTTTAGAAT-T-A--TTCCAAGGG-AAT-AGCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TTT-TTATTGACAA--AA---AACAAAattcgttgattttggctattgtta
gi|29 : ATTCAAAAA-T-CAT---GGAAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCTT---G--G-GAAA---A-T----TTT--AAAA-TTCAAAAT-A-TCTT-GG---AGATA-C-AAATTA---T-ATT--G-AGTTCTGG-GA-GACATT---GCCTTGG-A-GATAGTCAAGccaccaccccccaaaggaaaagagagagagagaagagaataactgtta
gi|3 : caaTC--AGTTAAAA-AGTGGCGC-CG---------GGGATAGCGC---CTT--GAAATGAATCTACG-T-AA-TA-AAAA-G-AG-T-G-CAGAAATTTGCTTGGTC-ATA--TT-----------T--GAA-TCATTTTTGAGA----T-AT--GATTCAGAC-------AGA--------------AAAC---T--AC----TG-----TATATT---------T-TATTTAT-AAA---A--TGA-CTTACA-TGT-A---T-G-AGAACA-T-TTATGTGAAA--TGTGA-A--CAAGA-T--TATA-A-GCATCGAA-A-TTTC-ATACTT-TATTTTACA-T-C--CG-TC-ATT--ATTTTACGG-AG-TAGCC--C-G-A-AAGAT-ACGACT-GCAT-CCGA-AGAATTTT-CAT---ATGT--T--ATT-G----T-----AATG--CGG-------------------C--------AT-TTAA---GCT-C-AAA-CA-A-TGTACAT-GC------GGGAATAGTTT----------AGA-TTAAC-AAAGTTT---CTT-G-TT--GAT---TATCTCG-TAAATA---A-TAATTA--TCTTC----TTATGAAAC--GATCAAC-G--AAAG-T-GCAG-AACAACT-G-GCAAAAC-----------A--GAGAGCA-CA-CCAAAATG-GTA--ATACACAA-TA--TTAA-CAGTAAACAGCTA--GA-TA-T---TATT--TATTCCA------TTA--GC-TGTTGTG---TTA-AGTTGCT-GT-GTTTT-TGT-ATGT-------GAAAAA-AAAACCCTG---ACAACAATA-TT-AAGACAA-G--TGT-AA-GAG-GG-TCCAT-GGG--TC-CA-TCG-TTAC-TTGAA-CA-GC--TGA-TCAAC-C-G--TT--CG-ATTTG-TT-T---CA-CGAATTTTAG-AT-T-A--TTTCAAGGG-AAT-GTGAAGTT-TC-TGA--TT----TTG----T--TGTGTT-T-AATA-ATA-----TCTATTATTGAC
gi|3 : AGAA--TTTTAA--TGTT-AG--TAATT-AA-TGCTT-ATTT---AT-TAA-AG-TGGT-A------AT-TCCAAGTGGA--C-AAA-ACACTAAATTTT-A-C-AGTTTTTATTGAAAATC-AAAAAC--GGAGATCTT-GAA--GATC-TGA--TAC-AATTAC---AAAAAT-CTT----GGAGAAGC-A-CA-TTTG-AA-T-TACAAAAATCTT---G--G-GAAA-CAA-AT---TTT--AAAA-TTC-AAAA-A-TC-TTGG---AAATA-C-AA--TAT--T-ATT--A-AGTTCTTG-GA--ACATT---GCCTT-G-A-GAT-GTCAAGCAC-T-TAG---ACAAATG-TATGC-TAA---GA-TTC--AATTAAATAAGAGATT-------GACAT-TACCAGA----TG---C--AAG---AGAT-A--AA-A-TG-CAATA--TTTGTGAATCCTAAAT-A-TTGCTTcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaattttaatgttagtaattaatgcttatttattaaagtggtaattccaagtggacaaaacactaaattttacagtttttattgaaaatcaaaaacggagatcttgaagatctgatacaattacaaaaatcttggagaagcacatttgaattacaaaaatcttgggaaacaaattttaaaattcaaaaatcttggaaatacaatattattaagttcttggaacattgccttgagatgtcaagcacttagacaaatgtatgctaagattcaattaaataagagattgacattaccagatgcaagagataaaatgcaatatttgtgaatcctaaatattgctt
gi|30 : tcagttaaaaagtggcgccggggatagcgccttgaaatgaatctacgtaataaaaagagtgcagaaatttgcttggtcatatttgaatcatttttgagatatgattcagacagaaaactactgtatattttatttataaaatgacttacatgtatgagaacatttatgtgaaatgtgaacaagattataagcatcgaaatttcatactttattttacatccgtcattattttacggagtagcccgaaagatacgactgcatccgaagaattttcatatgttattgtaatgcggcatttaagctcaaacaatgtacatgcgggaatagtttagattaacaaagtttcttgttgattatctcgtaaataataattatcttcttatgaaacgatcaacgaaagtgcagaacaactggcaaaacagagagcacaccaaaatggtaatacacaatattaacagtaaacagctagatattatttattccattagctgttgtgttaagttgctgtgtttttgtatgtgaaaaaaaaaccctgacaacaatattaagacaagtgtaagagggtccatgggtccatcgttacttgaacagctgatcaaccgttcgatttgtttcacgaattttagattatttcaagggaatgtgaagtttctgattttgttgtgtttaataatatctattattgaccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTCACGTGACCCCGTCTATTACTAGT-AGTTTA-CT--G-TTC--AGTCAAAG---TGGTGC-AG---------GGG-TAGCAC---CT---CAAATGAAT
gi|31 : gtca-GCGACT-GCAT-CCGA-AG---TTT-ATCAAGATGT--TAAATT-G----T-----AACG--CG--------------------C--------
gi|4 : TTAG--TAATT-AA-TGTTT-ATTT---TT-CAA-AG-TGGT-ACATGTAAT-TCCAG-TGGA--C-AAA-ACA-TAAA-TTT---T-AGTTTTTATTGAAAATTAAAAA-CG-G-AGATCTT-AAA--GATC-TGA--TAC-AATTA---AAAACAT-CT----CGGAGAAAC-A-CA-TTTGAAA-T-TACAAAAATCCT---G--GAGAAA-CAA-A----TTT--AAAT-TTCAAAAA-AATCTTGGG---AGAAA-C-AAATTA---T-ATT--G-AGTTCTTG-GA-GACATT---GCCTTGG-A-GATAGTCAAGCAC-T-TAG---A-CAA----------------ATT-C--AATAAAATAAGAGCATG-AC-ATTACATGTACCAGA----TG---C--ACG-A-AGAA-T--AA-A-TG-C-ACA--TTTGTGAAT-TTAGAT-A-TTGCTTCATATTGAGA-AAATT-CAA-CAGCGTT-------------ATTTT--ATTT---ACCATATT-TGCAATAT-GTGCACAATGAG-----ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TG-AT-GGTTT--TGAC--GAAAA-A-----ATAA-T--TT-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TAA--TTAAA-AT-GT-GACA-C-ATA-T-GT----ATA-CTGAT-GTCT-CATACTACATGTAT---CA--CAGTACC-G-GTA--C-TC-AA-ATTTCCAAA-TGT--TTTG-T--TCAAACG-G-ACCA-C-TA-TA--T-TA-TA-TTAA-AC--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtcaaagaa
gi|5 : tgGGGTC-CGTGACCCCGTCTCT------TCGGTTTA-CT--GCTTC--AGTTAAAAAGTTGGCGC-CGTCCGAGGCTGGT-TAGCGCAACCT---GAAATGAATCTACGCT-AA-TA-AAAA-G-AG-TTG-CAGAATTTTG-TTGGTC-A-A--TT-----------TATGAA-TCATTTTAGAGAACAAT-AT--GAT-----C-------AGA--------------AA-C---T--AC----TGTA---TATATTCG-----C-TCTATTTAT-AAACAAAA-TGA-CTT-----GT-AAACT-G-AGA-CA-T-TTATGTGAAA--TG-GA-AAGTACAG-T--TATA-AAG-ATCGAA-T-TA-C-ATACTT-TATTT-ACA-T-CCCGG-TCTATA--ATT--ACGG-AGCTAGCCTCC-G-AGAAGAT-ACGAC--GCAT-CCGA-AG---TTT-TTC---GAGTACT--GCT-G----T-----AATG--CG--------------------C--------ATATTAA---GCTTCGAAAACG-A-TGTAAAT-GCATAAGGGGGAATATTTT----------AGA-TTAACCAAAGTTTTC-TTTTG-TT--GATC--TA-ATCG-TAAATAAT-T-ACATTAA-TCTTACGTATGATGAAAC--GATCAAC-GGCAAAG-TTGCAA-GAAAACT-GCGCCAAAACAGGCGCGGGGG--AAGAGCA-CAACTAAA-TG-GTA--A-ATCCAACTA--T-AA-CAGTAA-CAG-AAT-GA-TAAT---TATT--TATTCCA------T-A--GC-TTGTGTA---TTA-AGTTGCT-GT-GTTTG-TGT-ATGTTGGAAGAGAAAAACAAA--CCCGCGCACAACCATATTT-AAGAC-A-GACTGT-AA-GAG-GG-TCAAT-AGGCTTCGCAGTCGTTTACTTTGAACCA-GCCTCGATTCAAC-C-GTTTT--CGTATTTG-TT-TTCCCACCGAATTTTAACATCT-A--TTTCAAGGGCAAT-GTCACGTTGTCTTGAGCTT----TTG----TTGTGT-TT-T-AATCAATA-----TCT-TTATTTACcatgtagaatggaacgcacaatatgataaatattgagtatacgtattaggatgtagaatttagagtagcaaatcatggcgtttgaactcctaagcaagaatggctatcaccaaggtgatggcttcatattctctgatttatcgagagggaggcagtgtgttgcaaattgtgctgtattctaaattaattttgaaagatgtgaatttcaaaaatggtcataaag
gi|6 : cgGGGTCACGTGACCCCGTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GTTGGCGC-CG---------GGG-TAGCGC---CT---GAAATGAATCCACGCT-AA-TA-AAA--G-AGAT-G-CAGAA-TTTGCTTGGTC-ATAT-TT-----------T--GAA-TCATTTT-GAG-A--AT-AT---AT-----CG------AAA--------------AAAC---T--AC----T------TATATT-G-----AGT-TATTTATAAAA---AA-TCA-CCT--A-TGT-----T-G-AGACCA-T-TTATGTGAAT--TGTGAGA--CAAGA-T--TATATA-G-ATCGAA-A--T-C-ATACTT-TATTT-AAA-TCC--GG-TCTATTA-TTTT-ACGG-AG-TAGCC--T-G-AGAAGAT-ACGACT-GCAT-CCGAGAG---TTTAGTC---ATA------GTT-G----T-----AAT---CG--------------------C--------GA-TAAAGCGGCT-CGAAA-CG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAAC-AAAGTTTTC-ATT-T-GT--GATCTATA-ATCG-TAAACAT--T-AAATTAA-TCTTGT---TTATAA-----GAACAACAG--AAAG-T-GCAA-GAAAACT-G-GCAAAAG-----------C--GAGAGCA-CA-CTAAAAC--GTA--A-ATACAA-TA--T-AATCAGTAAACAG-TA--GATTA-T---T-TT--TATTCCAG-----T-ACTGCTTGTTG-G---AT--AGTTGCT-GTGGTTTT-TGT-ATGT-------GAAAAA-AAA--CCCG---ACAAC-ATA-TTCAAGAC-A-G--TGT-TA-GAG-GG-CTCAT-GGG--T--CA-TCGTTCAC-TAGAA-CA-AC--TTA-TCAAC-CGG--TT--C--A-TTG-TT-T---CA-TCGATTTTAGAAT-T-AGTTTTCAAGGA-AAT-GTCAAGTT-TC-TGA--------TTG----T--TGTGTT-T-AAT--A
gi|7 : cg-TTC--AGTCAAAG---TGGCGT-CG---------GGG-TAGCGT---CT---CAAATGAATCTACGCT-AG-TA-AAAA-G-AG-T-G-CAGAA-GTTGCTTGGTC-ATAT-TT-----------T--GAA-TCATTTT-GAGAA--AT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-G-----A-T-TATTTAT-AAA---AA-TTA-CTTACA-TGT-A---T-G-AGA-CA-T-TTCTGTGAAA--TATGA-A--CAACA-T--TATA-A-G-ATCGAA-A-TT-C-ATACTT-TATTT-ACA-TCC--GG-TCTATT--TTTT-ACGG-AG-TAGTC--C-A-AGAAGAT-GCGACT-GCAT-CTGA-AG-------------ATGT--T--ATT-G----T-----ATTG--CG--------------------C--------AT-TTAA---GCT-CGAAA-CG-A-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAAC-AAAGTTCTC-CTT-G-TT--GATC--TA-ATCG-TAAAC------AAATTAA-TCTTG----TTATGA---------AAC-G--AAAG-G-GCAA-GGAAACT-G-GCAAAAA-----------G--GAGAGCA-CA-CCAAAATG-GCA--A-ATACAA-TA--T-AA-CAGTAAACAG-TA--GA-TA-T---TGTT--TATTCCA------T-A--GT-TGTTGTG---ATA-AGTTGCT-GT-G-TTT-TGT-ATGT-------GAAAAA-A------CG---ACAACAATA-TT-AAGAC-A-G--TGT-AA-GAT-GG-TCCAT-GGA--TC-CA-TTGTTTAC-TTGAG-CA-TC--TGA-TTAAC-C-G--TT--CG-A-TTGTTT-T---CA-CGAATTTTAGAAT-T-A--TTTCAAGGG-AAT-ATCAAGTT-TC-TGA--TT----TTG----T--TGT-TT-T-AAT--ATG-----TCT-TTGTTAGTAATTAATG
gi|8 : -TATAC-CAA---TATATC--AATAAAACA------TG-AGCATGATAT--ACCAGA----TG---C--ATG-A-AGAA-TGTAA-A-TG-A-ACA--TTTGTGAAT-TTAAAT-A-TTGCTTCATACTGAGAGAAATA-CAATCAGCGCTATTTCACTCCGGGATTTC--ACTT---ACCATATT-TACAACAT-TTGCACA--GAGAG---ATCATGTTT-ATTTT-GAAAG-ACA--GT--A-TG-AT-GATTT--TGA---AAAGA-A-ATG-ATAA-T--GC-ATTTTG-TTTGAA-A--G-CAAA-T--TAGAA------------TTATTTTAAACAT-GT-GACA-C-ATA-T-GT----ATA-CTGGT-GTCT-CATTC------TAT---CA--AAGTACC-G-GTA--C-TTAAA-ATTCC--AATTTT--TTTG-T--TCAAAAG-G-ACCA-C-CA-TG--G-TA-TA-TCAA-AT--TCCAATCAGGTAATTAAAA-CT-CTG-TA-AA-T-A--AAACCA--C-ACAATAtttat
gi|9 : GGGTCACG-GACCC-GTCTAT------T-GGTTTA-CT--G-TTC--AGTTAAAA-GT-GGCGC-CG---------GG--TAGCGC---CT---GAAATGAATCTACGCTGAA-TA-AAA--G-AG-T-G-CAGAATTT-GCTTGGTC-ATA--TT-----------T--TAA--AATTTT-GAGAA--AT-AT--GAT-----C-------AGA--------------AAAC---T--AC----T------TATATT-GTATATA-T-TATTTA--AAA---AC-TG------CATTGT-T---T-G-AGA-CA-T-TTATGTGAAA--TGTGA-A--CAAGA-T--TATA-A-G-ATCGAA-A-TT-C-ATACTT-TATTT-ACA-T-C--GG-TCTATT--ATTT-ACGG-AG-TAGCC--CGG-AGAAG-T-ACGACT-GCATGCCAA-AG---TTT-TTC---ATGT--T--ATT-G----T-----TATG--CG--------------------C--------AT-TAAA---GCT-CGAAA-CGAA-TGTAAAT-GC------GGGAATATTTT----------AGA-TTAAC-AAAGGTTTCTTTT-GTTT--GAT-------TC---------------ATTAA-TCTT-----TAATGAAAC--GATCAAC-G--AAAT-T-GCAA-GGAAACT-G-GCAAAAA-----------G--GAGAGCA-CA-CTAAAGTG-CTAATA-ATA-AT-TA--T-AC-AAGTAATCAG-TT--GA-TA-T---TATT--TATTCCA------T-A--GC-TGTTGTG---ATA-AATTGCT-GT-GTTTTGTTT-ATGT-------GAAAAA-AAA--catgtaaaatggaacccacaatataataaatattgagtatacatgcatctttaggatataggatttagaattgcaaaacacggtatttaaactactaagcaagactgactatcatcaagtaaatgatgatttgtcgagagggaggcaattgtgctgtattcttaattaaagctcattacgaaaggtgtgaattttaaaaatgatctaaacatga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): TGTGTATTAAAAAATTGTTATATGTAATTACAAAAAGATTAAATCATCTTTGCTGCATTGTGAGGACATTACATGTACTGTAAGGATCGTAAAGTCACATTGCTACACATACATAAAACTGTACGTAGAACTGTACATATT
Unaligned ( gi|32 ): CTTTAGATATTAGCTGAAAACTCATGGGTTAATCCCAAATTAAATC
Unaligned ( gi|33 ): CAGGGGCGGATCAGGAATTCTGGTGGGGGGAGGGGGGC
Unaligned ( gi|34 ): AAATGACTGACATTTCAAGCAACTGTTTACTA