lowQualScore : 111111 2222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 7777777777 11111 2222 1111 33333333333333333333333333333333333333333333333 2222222222 111 11 111 111 1 1 111111 22 33 4 66666 5555555555555555555555555555555 1111111111111111111111111111111111111111111111111111111111111111 1 5555555555 1 4 6666666666666666666666666 22 2 8888888888 111111 3333 111 1111111 11111 222 333333 2222 111 11111 111 222 11 22 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222 111 444444444444444444444444444444444444444444444444444 666666666666666 1 1 1 2222222 1 11 333 1 1
lowQualScore : 2 0 0 2 0 1111111111 0 00000 6 3333 88 6 3 77 2222 6 6 7 5 5 11111111111111111111111111111111111111111111111 4444444444 444 88 11 1 111 999 3 6 4 6 7 555555 6 11 00 0 6 99999 6 6666666666666666666666666666666 0000000000000000000000000000000000000000000000000000000000000000 5 0000000000 5 6 0 5555555555555555555555555 11 4 0 2 3333333333 000000 8888 777 8888888 66666 2 8 8 222 8 8 8 000000 6 9999 000 77 22222 77 4 777 6 6 555 6 55 8 8 22 8 66 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 77 6 1 444 444 222222222222222222222222222222222222222222222222222 777777777777777 0 0 2 2 0 4444444 2 2 33 7 111 6 3 5
lowQualScore : . . . . . .......... . ..... . .... .. . . .. .... . . . . . ............................................... .......... ... .. .. . ... ... . . . . . ...... . .. .. . . ..... . ............................... ................................................................ . .......... . . . ......................... .. . . . .......... ...... .... ... ....... ..... . . . ... . . . ...... . .... ... .. ..... .. . ... . . ... . .. . . .. . .. ..................................................................................... . .. . . ... ... ................................................... ............... . . . . . ....... . . .. . ... . . .
lowQualScore : 5 0 0 5 0 8888888888 8 77777 0 5555 33 7 9 99 1111 7 3 5 7 7 00000000000000000000000000000000000000000000000 0000000000 000 88 00 0 777 000 3 7 0 0 0 000000 0 00 00 0 0 00000 0 0000000000000000000000000000000 0000000000000000000000000000000000000000000000000000000000000000 0 0000000000 0 0 0 0000000000000000000000000 00 0 0 5 8888888888 888888 8888 555 5555555 55555 2 0 0 000 0 0 0 555555 7 3333 000 99 55555 00 0 000 7 7 000 7 00 0 0 88 0 00 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 33 7 0 222 888 222222222222222222222222222222222222222222222222222 000000000000000 0 0 5 0 0 2222222 5 8 88 3 000 0 3 0
consensus : TGTNGAAAGAGAAGAATTTNA-TAC-TTA--TTNTCAGAATTGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGT-ACC--ATC-TAT--CCTTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---G-ATCAAA--GAATTAG-TA--AGTT-ACATGAAGANTATGTATTCTGGGATGTCCCAGCCGACAAAGGCTGTGAACAATATTGATTGGTTGTTTGTAAGGTTCATTACTACAACTGCACTTTTAACAACGAACTTTTGGTATTAACTCC-ATCAGTGGTCAATCGTTTACTCACACCTCCTACTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAAAATCATTGCTTCCGTTTTAAACACATTTAATATCCCAGTCAAATGGAACCGGAAGA----ATAGTGAAACTACCGTTACTNTCANTGGATTCAGA--TT---TAAA-ANCCCTT--A-ACAA---AGATA---C-A-TCGCTGGN-TCCAG-TA-AA---TGT-TCC-ACCAA-GCC-NCTNTCTTT-ACTCCT----ACAA---AG--ATA---C-ATC-GCNGGN-TCCAGT-A-AA---TGT-TCCA-CCAA-GCC-CCTNTCTTTA-CTCCTNAC---AAA---ATNA-CTGACAGCTG-T-AAA-----G---CA--ACTT-CAGA---TGGAT--TG-TGCAACT-ACATAAC-TATGCCAGAAGT-GGTGT-AAATCAAA-TGTGGATTCT--NAAAAA--CTCT------------A-------------NAGAA--TTT------G--------AAATCCCAGAAC--TCT-TCTCA-AATC-AAC-AACATCAAAACAT-ATGACTTN-TCAACACCTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
Reference ( gi|2 ) : TATGGAAAAAGTAGAAATTGA-TACCTTAAATTCTCAGAATGGA-TAGAAT---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CAGAATAA-A-AGTGCGT-ACC--ATC-TAT--CGTTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---G-ATCAAA--GAATTAGATA--GGTT-ACATGAAGATTACGTTTTC------GTTCCAGGTGACAAAGTGTGTG-ACAATGTTGTCT--TTGTTTGTAAGGCTCAT--------------TTTTA--AACAAAC--CTGGTATTAACTCCAATT--TGGT-AATCG--TGCTTACA-CTCCAAATG-CTCTTTCAA--AAGATTAAA-TTCT--TCAACATC-CTGTTGCAATTTTACACACATTTAATATCTCAGT-AAATG-----GGAAGAGGGGATA-TG-AGTTACCGTGGCTAT-ACTGGATTC----------TAAA-ACTTCTT----ACAA---AGATA---C-A-TTGCGGGA-TCTAG-TA-AA---TGT-TCC-ACCAA-GCC-CCTGACTTT-ACTCCT----ACAA---AG--ATA---C-ATT-GCAGGA-TCTAGT-A-AA---TGT-TCCT-CCAA-GCC-CCTGACTTTA-CTCCCCAC---ACA---ATTA-TTGATAGCTG-T-AAA-----G---CA--ACTT-CAGA---TGGAT--TG-TGCAACA-ACATAACTTATACCAGAAGT-GGTGT-AAATCAAA-TGTGGATTCT--GAAAAA--CTCT------------A-------------TGGA---TTT------G--------AAATCCCAGACC--TAT-TCTTA-AATC-AAC-AACATCAAAACGT-ATTACTTA-TCAACACTGTACACTACCATTCC--ACACAATA-AATTAAATACTA
gi|1 : TATTGAAAAAGAAGAATGTGAATACCTTA-----TC-GAATGGACTAAAAG---CTATTAAGAAGGTTATTGAAA-TCCCGTATTAG--ACA----TGTACGTACCAG-ATAGT-CGTAACC--ATC-TTC--CGTTCTG-T------G-TTTC----GATTAAA---C------GGAAGT---GAATCAAT--GAATTAGATA--AGTTCACATGAGGAATATGTATTCTGGGATGTCCCAGCCGACAAAGGCTGTGAACAATATTGATTGGTTGTTTGTAAGGTTCATTACTACAACTGCACTTTTAACAACGAACTTTTGGTATTAACTCC-ATCAGTGGTCAATCGTTTACTCACACCTCCTACTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAAAATCATTGCTTCCGTTTTAAACACATTTAATATCCCAGTCAAATGGAACCGGAAGA----ATAGTGAAACTACCGTTACTATCAATGGATTCAAACCTTCA-TAAA-ACCCCTTAAA-ACAA---AGATA---CTATTTGCTGGACTCTAGTTATAA---TGTCTCC-ACCAACGCC-AGTT-CTTTAACTCCTC---ACGA---AA--A
gi|16 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcacaTGTGAAAAGAGAAGAATTTCA-TGT-----ATTTTCAGAATGGG-GGAAAT---GTA---AGAAGAATACGAAAA-GTTCATATAAG--ATG----CAT-CATAACAA-A-AGTAGGT-AAT--ATA-TAT--TCTTTTG-T------G-aatcaaggagcaacttcgagtttgtgaacatacagaattatgccagaagtggtgtaaatcaaaatatggattctttaaaaaactctaaaggaacttctagtggaatttgaaatcccagaactctatcacataatcaaccaacatcaaaacatatgacttattcaacactttacgaccatccgggcacgataaattaaagacaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|13 : AAAGAGGAAAAATTTA-TAA-TTAACCTTTCAGAATTGG-TAAAAAAAAGTAC-AAGAAGAATATTAAAATTCCCGT-TTAGTTACACCCCTAT-TAAAACAATA-AATATTT--CC--ATCATAT--CCTTCTG-TTTACTCG-GTTT----A--TAAA--CC------AAAGGT---G-ATTAAA--AAAGTA
gi|17 : aatagatAAAAATAAAACTTGA-CAC-------TGTCAGAA------AAAA----GTAT-AAGAGAAATATTAAAA-TCCCATGTTGG--AGA----CAT-CAAAACAA-A-AGT------CC-------------TTCTG-T----------------G--TAAA--CC------GGAAGT---G--TGAAA--GAATTGGt
gi|24 : TTGTCAAAAGTGA-TAAAAA---GTGT-AAGGAGAATATCAAAA-TCCCGTTTTAA--ACA----TA
gi|19 : ATTGA-TAAAAT---GTAT-AAGAAGAATATTGAAA-CCCCGAATTAG--AAA----GAT-CAAAAGAA-A-AGTGCAT-ACCATATC-TAA--CCTTCTG-T------G-TATC----
gi|15 : CCCGTATTAG--ACA----TAT-AAGTACAA-A-AGTCCGT-ACC--A-C-TATAGCCTTCTGCT------GCTTTCCTGTG--CAAATTCCTTGCAGAGGAGTCGGG-ATCAGACTGAATTAATTAGGGGTT-A-ATGAA
gi|21 : -A-AGTAAGT-GCC--ATC-CAT--C-------T------G-TTTC----A--TAAA--CC------ATAAGT---G-ATCAAA--GAAAT---TA--AGAT-ACATAAAAATat
gi|11 : CTTT-ACTGGATTCAGAAATTGTATAAA-AATCTTT----ACAA---AGATG---C-A-TCGCTTGT-TCCAG-CA-AG---TGC-TCT-ACCAA-GCC-CTTATCCTT-ACTACTA---ACTA---AC--CTA---C--TA-ACAG----CTATT-A-AAG--TGT-CACT-TCA
gi|6 : tac----------TAAA-AACCCTTCCAAACAA---AGATAACAC-A-TCGCTGGC-TCCAG-TA-AAAAGTGC-TCT-ACCAA-GCCTCCTTTCTTT-ACTgagatactgttgcactacataatccagaagtggtgtcaatcag
gi|23 : tccgaaattgca----------TAAACACTT-TT----ACAAGCGAGGTA---C-A-TTGCAGAA-TCCTG-TA-AA---TAT-TCC-ATCAA-GCttttaactaatactaacagctatcaaagagtcctcttcagagattaaactgtccactacatattccagaagttggtgtcaatcagatgtggattttaaaaactctaaagagattttggataccaaaaatccgagatttctaaaattgaactgcataaaacgtatgaatctaactttacacaacgattcctcacgataaattaaaatctagctttttcggattacatcgataattgctttttaaacaagaacggaacccgaaaaatacgaattttctagtcgttgggaaacagaacacaatatttgtcagaaaacactctgattgcccaacaagtactctaagtagattattaagagca
gi|9 : AA-TA-AAC--TGT-TTCTACCAA-GCT-ACTAAATTT-TCTCTTC---ACAA---AGACATA---A-ATT-GTAG
gi|1 : -ACCCCTTAAAACAA---AG--ATA---CTATTTGCTGGACTCTAGTTATAA---TGTCTCCA-CCAACGCC-AGTT-CTTTAACTCCTCACGAAAAA---ATCA------AG-------GA-----G---CA--ACTT-C-GA-----GTT--TG-TG-AACATACAGAA-TTATGCCAGAAGT-GGTGT-AAATCAAAATATGGATTCTTTAAAAAA--CTCT------------AAAGGAACTTCTAGTGGAA--TTT------G--------AAATCCCAGAAC--TCTATCACATAATC-AACCAACATCAAAACAT-ATGACTTATTCAACACTTTACG--ACCA-TCCGGGCACGATA-AATTAAAGACtggcgaactgatgaaacttcagctggattgtgcccctaaccaatgcctgaagcgacgcaaagcaaatgtaaatattacatttgtaaaatcttaaggtcttcaattataataccctatttcaaataata
gi|23 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcacatattgaaaaagaagaatgtgaataccttatcgaatggactaaaagctattaagaaggttattgaaatcccgtattagacatgtacgtaccagatagtcgtaaccatcttccgttctgtgtttcgattaaacggaagtgaatcaatgaattagataagttcacatgaggaatatgtattctgggatgtcccagccgacaaaggctgtgaacaatattgattggttgtttgtaaggttcattactacaactgcacttttaacaacgaacttttggtattaactccatcagtggtcaatcgtttactcacacctcctactgaccctttcaaagaagacgagatttcttctcaaaatcattgcttccgttttaaacacatttaatatcccagtcaaatggaaccggaagaatagtgaaactaccgttactatcaatggattcaaaccttcataaa-ACTTTT----ACAAGCGAG--GTA---C-ATT-GCAGAA-TCCTGT-A-AA---TAT-TCCA-TCAA-GCaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|11 : taaacT----ACAA---AG--ATG---C-ATC-GCTTGT-TCCAGC-A-AG---TGC-TCTA-CCAA-GCC-CTTATCCTTA-CTACTAAC---TAA---CCTA-CTAACAGCTATT-AAA-----G---TGTCACTT-CAGA-----GATACTGTTGC-ACT-ACATAAT-----CCAGAAGT-GGTGT-CAATCA
gi|6 : tacctttactggattcagaaattgtataaaaatctt----ACAA---AG--ATAACAC-ATC-GCTGGC-TCCAGT-A-AAAAGTGC-TCTA-CCAA-GCCTCCTTTCTTTA-CTTTTTA----ACT---AATA-CTAACAGCTA-TCAAA-----GAGTCC--TCTT-CAGAGATTAAAC--TG-TCCA-CT-ACATA--TT---CCAGAAGTTGGTGT-CAATCAGA-TGTGGATTTT---AAAAA--CTCT------------A-------------AAGAGATTTT------GGATACCAAAAATCCGAGAT-----T-TCTAA-AATTGAAC-TGCAT-AAAACGT-ATGA---A-TCTA-ACTTTACACAACGATTCC--TCACGATA-AATTAAAg
gi|9 : tccgaaattgcataaaaacccttccaaAAT-A-AAC--TGT-TTCTACCAA-GCT-ACTAAATTTT-CTCTTCAC---AAAGACATAAATTG-TAGTGG-C-GAACTGATG---AA--ACTT-CAGC---TGGAT--TG-TGC--C---CCTAACCAATGCCTGAAGC-GACGC-AAAGCAAA-TGTAAATatctagctttttcggattacatcgataattgctttttaaacaagaacggaacccgaaaaatacgaattttctagtcgttgggaaacagaacacaatatttgtcagaaaacactctgattgcccaacaagtactctaagtagattattaagagca
gi|5 : -CCTGTATTTA-TTCCCAAC---G-A---ATAT-TTGACAATTG-T-AAA-----GGAGCA--ACTTATAAG---TG--T--TG-GG----A-ATTTA-CATATGCCAGAAGT-GGTAT-TAATCAAA-TGTTGATTCT--CTAAAG--TGCC------------A-------------AAGAAT-TTTAGCAAGG--------AAATTCCAAAAC-------CTCA-TATC-AAC-AACATCAAAACATGATTTTTTT-TCAACATCTTACGCCACCATTCC--CCACGTTATTATTAAAGACattacatttgtaaaatcttaaggtcttcaattataataccctatttcaaataata
gi|10 : ttgaaacagaatactattatttccaattcctgccttgaccaccaA-----G---CA--GCTT-CAGG---CGTAT--TA-TGAAACT-ACATA-----TGCCAGAAGT-GGTGA-AAATCACA-TGTGGATTCT--GAAAAAACCTCTAAAGAACGTCTGA-------------TAAA---TGT------G--------AAATCCCAGAACATTTT-TCTT---ATC-AGC-AACATCGAAACAT-GTGACCTC-TCAACTCCATACATTAaatgttttttaacattattgacaattgatccttcaataaaaatagaaaaaggagcatttatatctagtgatcagccattctagaattactttgttgaactccattctgattttacatgtacttatgtacacacaaatactctgaattgatattaaagcaattctgaagttcccaatttacaatatttttgtagttttgacgattagatcctccaacagtctgttggaattcccacgggcacaaactgtgttcctttgttaatattttttatac
gi|8 : acttttcaatgcaaagttgaaggAAGT-G-TGTCAAATCAGA-TGTG-ATTCT--TAAAA---CTCT------------A-------------
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TCACTTTTGCCTTATGTCAGGTTACATTTTCACAAAACTTTACTTTGCTCCATTGAGAGTATTGAACAAGTTATTAGAAGATGTCAAAGCTAGTCCACAGTTGGATTCTTCAACACCTGAATGCAATGGTTATGGATGTTGCCATCACAGGCTCTTTAAAGTTCCGCAGATTACGGATAATGATCATTCCAAATAGTGCCACTGGTTCCTTAAGCTAAAAGTTTACTAATAACAGAATAGATGCCGTAAACATAAGCAACATTTTTCGTCATCAAAAAAATTCAGTGTCGTATTTCAGCATTTTTTTTTCAATTCAAGTCACCACCCGGCATTTCCTCCAGATATACTTCCACGATCACATCCAAACATGATTCACAAGGAAACTTTATAGTGCCATATTGGCAATCGTATACTTAGTCCACCCACATGTTCTCTTTTTACTGTAGTTCAACTAGCCATGTCATACTTGATATGTTAATATAATTGTTAGAAAATGAGAATTAAGATCACTTTTTTTAAAAGGTCCTAAATTCAAAGAACCTATGTCATTCAATTGACAATATAACATCACCTTCATAATGAATGCTGTCGAAAAGTATGCCAGACGATGGGTCAAATATGAAAA
Unaligned ( gi|4 ): CCATTGGGTCCACATCACATTCGCACCAAACTTTACTCTGTTTCTTTGAAAAATGTTGTATGAATTACAAGAAAAAAAATAAAGCTAGGGCCTTCTTGGATTCCTCAACATGGGAATACAGACTTGATTATATGATTGTGAATATTGCCTATTACAGACTCTTTGTTCCACCGCGCATTAGTGATGAAAGTGAACTCAAGAAACCTCACCGATTCCTACATCTCAAATTTGACAATAAAGTAATTAATGCTGTCAACATCAAAAACATCCTCAATCATAACAAAGTAGTCCTGCATCCCGCTTTATTTTGAGATGAAATCCACACCTTGTATTTCATACAGATATAGTTCCACTATTGCACCCAAGTTATTTGATTACAAGCAGGCGTTGCAGTACCTAGATATTGAACAATTACAGCGAAATGTTCCTCTTCCTCATTTAATTGTGGTCCCGCTGGTCATATTATTACTTGGGATATAAATATAATCCAAAATGAGGACTTCAGTCCCTTATCTTAAAATGTTCTAAATTCCGAAAACCTCGCTCATTTA
Unaligned ( gi|7 ): CTCAATTTTACGCTACGTCAACTGACGATTAGGTTCACACCGGATTTACAAATAGAAATATACTCTGTTTCATAGAGAGTTCTAAATACGTTAATGAAAAAGCCAAAGCTAGTCCATACCTGGAGTTTTCAACACGCGGAACTAAAAATCCAATTTAGGCCATTGCTGGCTCTTTAAATCACCGCAAATTATGGACGGTATACCTTTCGAATCTCACATCTAGTTTCTGAATCTCAAATCACCAACAAATAAATATGTGCCGTCAAAGGCAACGTTTCTCGTTACAAAAAAGTTTAGTCTTATATTCCAAAATATTTCCAGTTCAATGTTATACCTAGTTTTTCCTACAAATAAACTTACACTATTGC
Unaligned ( gi|12 ): CTGGACATGCCATTACTGGTTATATAAGTATAGATGGAAAAATAAAATAAGGGCTGGAATCACTTATTATAAAAGGTCCTAAATTCAGAGAACCTCAGTCACTCAGTTGGAGACAAAACTCCTAACTCCATTATGAATTATTTCGAAGATTATGCTAGTCGATGGGCC
Unaligned ( gi|14 ): TGAAAAGAGGACTCGAGATCACTTATTTCAAAAGATTCCCAACATTGGCGACAGAACTCCATCTCTGTTACAAATTCCGTCGAAGATTATGTCAGACGATTGGGCTATTATATGAAAAGGAAGTCGG
Unaligned ( gi|18 ): TTCTCAATTGACAATACTATTGTAGTTTGACGATCAGGTGTCGTGCATTCAGTTCCTCTTTCTTTTACGAACTCCCGATGGGCACGAATTTTGTGCGCCTTTTTATTATC
Unaligned ( gi|20 ): ATTGAAGGTATTGAGCAAGTTGATTAGACAATATGTCAAGAAGCATAGTCCACAATCCTTGTGTATTTTTCAACATCTCAGAA
Unaligned ( gi|22 ): ACAATTTCTCAGGTATAATTAAATCTAGGCTCTTTCAGATTACAGAATAACTTGCTTTTTAAA
Unaligned ( gi|25 ): ATAAAAAAGTAGTCCTGCATCCCGCCTTTTTAAAGATGAAA
Alignments
lowQualScore : 3333333333 1111 1111 1111111111111111111 111111 111 1 111 1 222222 1 11 55555555555555 11 11 22222 1 11 1 1 11 1 11 1 1 22222 4444 1 1 1 8888888888 3333 111 11 1111 1 1 1 1 2222 11111 11 111 3333333333333333333333333333333333333333333333333333 444444444444444444444444444444444 111 66666666666666666666666666666666666666666 111 3333333333333 111 1
lowQualScore : 0 1 3 4 1 8 7777777777 1 66 5 1111 55 5 2 66 0000 5 1 5 5 88 77 66 0 5 0 66 5 5 8888888888888888888 99 999999 111 6 99 3 6 777 0 2 1 4 999999 2 55 5 4 77 11111111111111 88 88 77777 5 88 5 4 2 5 88 2 5 88 3 5 3 2 3 5 66666 2222 5 5 1 2 1 6666666666 11 3333 777 0 44 0 3333 3 3 44 4 0 0000 55555 8 8 1 11 6 6 888 6 5 5 3 1 5 1 7777777777777777777777777777777777777777777777777777 5 666666666666666666666666666666666 1 5 333 9999 5 99 44 99 22222222222222222222222222222222222222222 111 6 7777777777777 1 6 99 6 6 8 3 99 1 77 3 444 0
lowQualScore : . . . . . . .......... . .. . .... .. . . .. .... . . . . .. .. .. . . . .. . . ................... .. ...... ... . .. . . ... . . . . ...... . .. . . .. .............. .. .. ..... . .. . . . . .. . . .. . . . . . . ..... .... . . . . . .......... .. .... ... . .. . .... . . .. . . .... ..... . . . .. . . ... . . . . . . . .................................................... . ................................. . . ... .... . .. .. .. ......................................... ... . ............. . . .. . . . . .. . .. . ... .
lowQualScore : 7 0 2 4 0 0 9999999999 0 11 7 0000 99 7 2 99 6666 7 0 0 0 22 00 99 1 0 1 99 0 0 6666666666666666666 22 222222 777 7 22 2 0 555 0 5 0 0 000000 5 00 5 0 55 55555555555555 00 55 00000 0 55 0 0 5 5 00 5 5 00 0 5 0 5 0 0 00000 5555 0 5 0 0 0 3333333333 77 0000 777 7 33 7 7777 3 3 77 0 0 8888 22222 0 0 0 88 7 7 333 7 7 7 0 0 7 0 9999999999999999999999999999999999999999999999999999 0 555555555555555555555555555555555 4 0 888 0000 0 22 55 22 77777777777777777777777777777777777777777 777 7 0000000000000 0 7 22 7 7 0 2 00 0 00 2 888 0
consensus : TATGGAAAAAGAAGAANTTGA-TACCT---A--TTNTCAGAATNGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATAA---GTT-ACATGAAGANTACGTNTTCTGGGATGTCCCAGNCGACAAAGNNTGTGAACAATGTTGNCTGGTTGTTTGTAAGGCTCATTACTACAACTGCACTTTTAACAACGAACCTTTGGTATTAACTCCAATCAGTGGTCAATCGTTTGCTCACACCTCCNANTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAANATCACTGCTNCCGTTTTANACACATTTAATATCCCAGTCAAATGGAACCGGAAGAGGGGATAGTGAGACTACCGTTACTATCACTGGATTCAGA--TT---TAAAACTCCTT--A-CAAAGATAC-A-TCGCTGG-NTCTAG-TA-AATGT-TCCACCAA-GCCCNTGTCTTT-ACTCCT----ACAAAGATA---C-ATC-G-CTGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNAC---AAA---ATTACTAA-CAG--CTG-T--AAA-----G---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTAAA-------------G-A-A-----------TTT-------GAAATCCC---AG-AACT---C------T-TCTCA-AA--TC-AA-CAACATCAAAACGT-ATGACTT-NTCAACACTTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
Reference ( family-10 ) : TGTNGAAAGAGAAGAATTTNA-TACTT---A--TTNTCAGAATTGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAG-TAA---GTT-ACATGAAGANTATGTATTCTGGGATGTCCCAGCCGACAAAGGCTGTGAACAATATTGATTGGTTGTTTGTAAGGTTCATTACTACAACTGCACTTTTAACAACGAACTTTTGGTATTAACTCCA-TCAGTGGTCAATCGTTTACTCACACCTCCTACTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAAAATCATTGCTTCCGTTTTAAACACATTTAATATCCCAGTCAAATGGAACCGGAAGA----ATAGTGAAACTACCGTTACTNTCANTGGATTCAGA--TT---TAAAANCCCTT--AACAAAGATAC-A-TCGCTGG-NTCCAG-TA-AATGT-TCCACCAA-GCCNCTNTCTTT-ACTCCT----ACAAAGATA---C-ATC-G-CNGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNAC---AAA---ATNACTGA-CAG--CTG-T--AAA-----G---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTANA-------------G-A-A-----------TTT-------GAAATCCC---AG-AACT---C------T-TCTCA-AA--TC-AA-CAACATCAAAACAT-ATGACTT-NTCAACACCTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
gi|1 : TATTGAAAAAGAAGAATGTGAATACCT-------TATC-GAATGGACTAAAAG---CTATTAAGAAGGTTATTGAAA-TCCCGTATTAG--ACA----TGTACGTACCAG-ATAGT-CGTAACC--ATC-T-T--CCGTTCTG-T------G-TTTC----GATTAAA--C-------GGAAGT---GAATCAAT--GAATTAGATAA---GTTCACATGAGGAATATGTATTCTGGGATGTCCCAGCCGACAAAGGCTGTGAACAATATTGATTGGTTGTTTGTAAGGTTCATTACTACAACTGCACTTTTAACAACGAACTTTTGGTATTAACTCCA-TCAGTGGTCAATCGTTTACTCACACCTCCTACTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAAAATCATTGCTTCCGTTTTAAACACATTTAATATCCCAGTCAAATGGAACCGGAAGA----ATAGTGAAACTACCGTTACTATCAATGGATTCAAACCTTCA-TAAAACCCCTTAAAACAAAGATACTATTTGCTGGACTCTAGTTATAATGTCTCCACCAACGCCAGT-TCTTTAACTCCTC---ACGAAAA
gi|1 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcaca-ACCCCTTAAAACAAAGATA---CTATTTG-CTGGACTCTAGTTATAA---TGTCTCC-ACCAACGC-CAGTTCTTTAACTCCTCACGAAAAA---ATCA------AG----------GA-----G---CA--A----CTT-C-GA-----GTT--TG-TG-AACATACAGAAT-T-ATGCCA-GAAGT---GGTGT---AAATCAAAATATGGATTCTTTAAAAAA--CTCTAAAGGAACTTCTAGTGG-A-A-----------TTT-------GAAATCCC---AG-AACT---C------TATCACATAA--TC-AACCAACATCAAAACAT-ATGACTTATTCAACACTTTACG--ACCA-TCCGGGCACGATA-AATTAAAGACaatcaaggagcaacttcgagtttgtgaacatacagaattatgccagaagtggtgtaaatcaaaatatggattctttaaaaaactctaaaggaacttctagtggaatttgaaatcccagaactctatcacataatcaaccaacatcaaaacatatgacttattcaacactttacgaccatccgggcacgataaattaaagacaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|10 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcacatattgaaaaagaagaatgtgaataccttatcgaatggactaaaagctattaagaaggttattgaaatcccgtattagacatgtacgtaccagatagtcgtaaccatcttccgttctgtgtttcgattaaacggaagtgaatcaatgaattagataagttcacatgaggaatatgtattctgggatgtcccagccgacaaaggctgtgaacaatattgattggttgtttgtaaggttcattactacaactgcacttttaacaacgaacttttggtattaactccatcagtggtcaatcgtttactcacacctcctactgaccctttcaaagaagacgagatttcttctcaaaatcattgcttccgttttaaacacatttaatatcccagtcaaatggaaccggaagaatagtgaaactaccgttactatcaatggattcaaaccttcataaaA-----G---CA--G----CTT-CAGG---CGTAT--TA-TGAAAC-TACATA------TGCCA-GAAGT---GGTGA---AAATC-ACATGTGGATTC--TGAAAAAACCTCTAAA-------------G-A-ACGTCTGATAAATGT-------GAAATCCC---AG-AACA---T------T-TTTCT-TA--TC-AG-CAACATCGAAACAT-GTGACCT-CTCAACTCCATACaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|11 : acttttcaatgcaaagttgaaggTACCTTTACTGGATTCAGAAATTGTATAAAAATCTTT--A-CAAAGATGC-A-TCGCTTG-TTCCAG-CA-AGTGC-TCTACCAA-GCCCTTATCCTT-ACTACT----Aatta
gi|11 : T----ACAAAGATG---C-ATC-G-CTTGT-TCCAGC-A-AG---TGC-TCT-ACCAAGCC-CTTATCCTTA-CTACTAAC---TAA---CCTACTAA-CAG--CTATT--AAA-----G---TGTCA----CTT-CAGA-----GATACTGTTGC-AC-TACATAAT------CCA-GAAGT---GGTGT---CAATC-Aactaacctactaacagctattaaagtgtcacttcagagatactgttgcactacataatccagaagtggtgtcaatcag
gi|13 : tacctttactggattcagaaattgtataaaaatcttAAAGAGGAAAAATTTA-TAATT---AACCTTTCAGAATTGG-TAAAAAAAAGTAC-AAGAAGAATATTAAAATTCCCGT-TTAGTTACACCCCTAT-TAAAACAATA-AATATTT--CC--ATCATAT--CC-TTCTG-TTTACTCG-GTTT----A--TAAA--CC------AAAGGT---GA-TTAAA--AAAGTAg
gi|15 : aatagatCCCGTATTAG--ACA----TAT-AAGTACAA-A-AGTCCGTA-CC--A-C-TATAGCC-TTCTGCT------GCTTTCCTGTG--CAAATTCCTTGCAGAGGAGTCGGGA-TCAGACTGAATTAA-TTAGGGGTT-A-ATGAAt
gi|16 : TGTGAAAAGAGAAGAATTTCA-TG--T---A--TTTTCAGAATGGG-GGAAAT---GTA---AGAAGAATACGAAAA-GTTCATATAAG--ATG----CAT-CATAACAA-A-AGTAGGTA-AT--ATA-TAT--TC-TTTTG-T------G-at
gi|17 : AAAAATAA-AACTTGA-CACT---------GTCAGAA-------AAAA---GTAT-AAGAGAAATATTAAAA-TCCCATGTTGG--AGA----CAT-CAAAACAA-A-AG-----------------T--CC-TTCTG-T----------------G--TAAA--CC------GGAAGT---G--TGAAA--GAATTGG-
gi|19 : ATTGA-TAAAAT---GTAT-AAGAAGAATATTGAAA-CCCCGAATTAG--AAA----GAT-CAAAAGAA-A-AGTGCATA-CCATATC-TAA--CC-TTCTG-T------G-TATC----
gi|2 : TATGGAAAAAGTAGAAATTGA-TACCTTAAA--TTCTCAGAATGGA-TAGAAT---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CAGAATAA-A-AGTGCGTA-CC--ATC-TAT--CG-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATAG---GTT-ACATGAAGATTACGTTTTC------GTTCCAGGTGACAAAGTGTGTGA-CAATGTTGTCT--TTGTTTGTAAGGCTCATT--------------TTTAA--ACAAACCT--GGTATTAACTCCAATT--TGGT-AATCGT--GCTTACAC-TCCAAATG-CTCTTTCAAA--AGATTAAATT-CTTC--AACATC-CTGTTGCAATTTTACACACATTTAATATCTCAGT-AAATGG-----GAAGAGGGGATA-TGAG-TTACCGTGGCTAT-ACTGGATTC----------TAAAACTTCTT--A-CAAAGATAC-A-TTGCGGG-ATCTAG-TA-AATGT-TCCACCAA-GCCCCTGACTTT-ACTCCT----ACAAAGATA---C-ATT-G-CAGGA-TCTAGT-A-AA---TGT-TCC-TCCAAGCC-CCTGACTTTA-CTCCCCAC---ACA---ATTATTGA-TAG--CTG-T--AAA-----G---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-AACATAACTT-ATACCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TGAAAAA--CTCTAT--------------G-G-A-----------TTT-------GAAATCCC---AG-ACCT---A------T-TCTTA-AA--TC-AA-CAACATCAAAACGT-ATTACTT-ATCAACACTGTACACTACCATTCC--ACACAATA-AATTAAATAC
gi|21 : -A-AGTAAGTG-CC--ATC-CAT--C--------T------G-TTTC----A--TAAA--CC------ATAAGT---GA-TCAAA--GAA--AT-TAA---GAT-ACATAAAAAta
gi|24 : --TTGTCAAAAGTGA-TAAAAA---GTGT-AAGGAGAATATCAAAA-TCCCGTTTTAA--ACA----TAt
gi|5 : CC-ACCA-----CCTGTATTTA-TTCCCAAC---GAAT--ATT--TGA-CAA--TTG-T--AAA-----GGAGCA--A----CTTATAAG---TG--T--TG-GGAATT-TACATA------TGCCA-GAAGT---GGTAT---TAATC-AAATGTTGATTC--TCTAAAG--TGCCAAA-------------G-A-A-----------TTTTAGCAAGGAAATTCC---AA-AAC--------------CTCA-TA--TC-AA-CAACATCAAAACATGATTTTTT-TTCAACATCTTACGCCACCATTCC--CCACGTTATTATTAAAGAC
gi|6 : ttgaaacagaatactattatttccaattcctgccttga----ACAAAGATAACAC-ATC-G-CTGGC-TCCAGT-A-AAAAGTGC-TCT-ACCAAGCCTCCTTTCTTTA-CTTTTTAA---CTA---AT-ACTAA-CAG--CTA-TC-AAA-----GAGTCC--T----CTT-CAGAGATTAAAC--TG-TCCA-C-TACATA------TTCCA-GAAGTT--GGTGT---CAATC-AGATGTGGATT---TTAAAAA--CTCTAAA-------------G-AGA-----------TTT-------TGGATACC---AA-AAAT---CCGAGATT-TCTAA-AA--TTGAA-CTGCAT-AAAACGT-ATGA----ATCTA-ACTTTACACAACGATTCC--TCACGATA-AATTAAAaatgttttttaacattattgacaattgatccttcaataaaaatagaaaaaggagcatttatatctagtgatcagccattctagaattactttgttgaactccattctgattttacatgtacttatgtacacacaaatactctgaattgatattaaagcaattctgaagttcccaatttacaatatttttgtagttttgacgattagatcctccaacagtctgttggaattcccacgggcacaaactgtgttcctttgttaatattttttatac
gi|8 : tccgaaattgcataaaaacccttccaaA---T-ATC-GTCTG---TCCAGT-A-GG--------CT-ACCAAGCT-C-TTTCTTTA-CTTTTGG----ATA---ACTACTAAACAGGCCTA-TCAAAA-----G----A--ATCCTCTT-CAG------GAT------------------AC-T-GTTCCATGAAGTTCAAGTGTGTCAAATC-AGATGTG-ATTC--TT-AAAA--CTCTAAA-------------ACA-G-----------CTT-------AAAATTTTTGAAGAAACTATAC------T-T-TCA-AAAGTC-AG-CTACAatctagctttttcggattacatcgataattgctttttaaacaagaacggaacccgaaaaatacgaattttctagtcgttgggaaacagaacacaatatttgtcagaaaacactctgattgcccaacaagtactctaagtagattattaagagca
gi|9 : cAAT-A-AAC--TGT-TTCTACCAAGCT-ACTAAATTTT-CTCTTCAC---AAAGACATAAATTG-TAG--TGG-C--GAACTGATG---AA--A----CTT-CAGC---TGGAT--TG-TGC--C---CCTAAC-CAATGCCT-GAAGC---GACGC---AAAGC-AAATGTAAATga
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCACTTTTGCCTTATGTCAGGTTACATTTTCACAAAACTTTACTTTGCTCCATTGAGAGTATTGAACAAGTTATTAGAAGATGTCAAAGCTAGTCCACAGTTGGATTCTTCAACACCTGAATGCAATGGTTATGGATGTTGCCATCACAGGCTCTTTAAAGTTCCGCAGATTACGGATAATGATCATTCCAAATAGTGCCACTGGTTCCTTAAGCTAAAAGTTTACTAATAACAGAATAGATGCCGTAAACATAAGCAACATTTTTCGTCATCAAAAAAATTCAGTGTCGTATTTCAGCATTTTTTTTTCAATTCAAGTCACCACCCGGCATTTCCTCCAGATATACTTCCACGATCACATCCAAACATGATTCACAAGGAAACTTTATAGTGCCATATTGGCAATCGTATACTTAGTCCACCCACATGTTCTCTTTTTACTGTAGTTCAACTAGCCATGTCATACTTGATATGTTAATATAATTGTTAGAAAATGAGAATTAAGATCACTTTTTTTAAAAGGTCCTAAATTCAAAGAACCTATGTCATTCAATTGACAATATAACATCACCTTCATAATGAATGCTGTCGAAAAGTATGCCAGACGATGGGTCAAATATGAAAA
Unaligned ( gi|4 ): CCATTGGGTCCACATCACATTCGCACCAAACTTTACTCTGTTTCTTTGAAAAATGTTGTATGAATTACAAGAAAAAAAATAAAGCTAGGGCCTTCTTGGATTCCTCAACATGGGAATACAGACTTGATTATATGATTGTGAATATTGCCTATTACAGACTCTTTGTTCCACCGCGCATTAGTGATGAAAGTGAACTCAAGAAACCTCACCGATTCCTACATCTCAAATTTGACAATAAAGTAATTAATGCTGTCAACATCAAAAACATCCTCAATCATAACAAAGTAGTCCTGCATCCCGCTTTATTTTGAGATGAAATCCACACCTTGTATTTCATACAGATATAGTTCCACTATTGCACCCAAGTTATTTGATTACAAGCAGGCGTTGCAGTACCTAGATATTGAACAATTACAGCGAAATGTTCCTCTTCCTCATTTAATTGTGGTCCCGCTGGTCATATTATTACTTGGGATATAAATATAATCCAAAATGAGGACTTCAGTCCCTTATCTTAAAATGTTCTAAATTCCGAAAACCTCGCTCATTTA
Unaligned ( gi|7 ): CTCAATTTTACGCTACGTCAACTGACGATTAGGTTCACACCGGATTTACAAATAGAAATATACTCTGTTTCATAGAGAGTTCTAAATACGTTAATGAAAAAGCCAAAGCTAGTCCATACCTGGAGTTTTCAACACGCGGAACTAAAAATCCAATTTAGGCCATTGCTGGCTCTTTAAATCACCGCAAATTATGGACGGTATACCTTTCGAATCTCACATCTAGTTTCTGAATCTCAAATCACCAACAAATAAATATGTGCCGTCAAAGGCAACGTTTCTCGTTACAAAAAAGTTTAGTCTTATATTCCAAAATATTTCCAGTTCAATGTTATACCTAGTTTTTCCTACAAATAAACTTACACTATTGC
Unaligned ( gi|12 ): CTGGACATGCCATTACTGGTTATATAAGTATAGATGGAAAAATAAAATAAGGGCTGGAATCACTTATTATAAAAGGTCCTAAATTCAGAGAACCTCAGTCACTCAGTTGGAGACAAAACTCCTAACTCCATTATGAATTATTTCGAAGATTATGCTAGTCGATGGGCC
Unaligned ( gi|14 ): TGAAAAGAGGACTCGAGATCACTTATTTCAAAAGATTCCCAACATTGGCGACAGAACTCCATCTCTGTTACAAATTCCGTCGAAGATTATGTCAGACGATTGGGCTATTATATGAAAAGGAAGTCGG
Unaligned ( gi|18 ): TTCTCAATTGACAATACTATTGTAGTTTGACGATCAGGTGTCGTGCATTCAGTTCCTCTTTCTTTTACGAACTCCCGATGGGCACGAATTTTGTGCGCCTTTTTATTATC
Unaligned ( gi|20 ): ATTGAAGGTATTGAGCAAGTTGATTAGACAATATGTCAAGAAGCATAGTCCACAATCCTTGTGTATTTTTCAACATCTCAGAA
Unaligned ( gi|22 ): ACAATTTCTCAGGTATAATTAAATCTAGGCTCTTTCAGATTACAGAATAACTTGCTTTTTAAA
Unaligned ( gi|23 ): TAAACACTTTTACAAGCGAGGTACATTGCAGAATCCTGTAAATATTCCATCAAGC
Unaligned ( gi|25 ): ATAAAAAAGTAGTCCTGCATCCCGCCTTTTTAAAGATGAAA
Alignments
lowQualScore : 3333333333 1111 1111 1111111111111111111 111111 111 11 1 222222 1 11 55555555555555 11 11 22222 1 11 1 1 11 1 11 1 1 22222 2222 1 1 1 8888888888 222 111 11 1111 1 1 1 1 2222 11111 11 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 666666666666666666666666666666666666666 111 3333333333333 22222222 111 1
lowQualScore : 3 1 8 9999999999 1 44 5 1111 55 5 2 66 0000 5 1 5 5 88 77 66 0 5 0 66 5 5 8888888888888888888 99 999999 111 6 99 1 3 33 0 2 1 1 999999 1 22 5 1 77 11111111111111 88 88 22222 5 88 5 1 1 5 88 2 5 88 1 5 1 2 1 5 66666 2222 5 5 2 6666666666 333 777 0 44 3333 3 3 1 2 0 0000 55555 8 8 11 6 6 888 6 5 5 3 1 5 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 5 333 9999 5 99 44 99 222222222222222222222222222222222222222 111 6 7777777777777 1 6 99 6 6 6 00000000 77 3 444 0
lowQualScore : . . . .......... . .. . .... .. . . .. .... . . . . .. .. .. . . . .. . . ................... .. ...... ... . .. . . .. . . . . ...... . .. . . .. .............. .. .. ..... . .. . . . . .. . . .. . . . . . . ..... .... . . . .......... ... ... . .. .... . . . . . .... ..... . . .. . . ... . . . . . . . ............................................................................................... . . ... .... . .. .. .. ....................................... ... . ............. . . .. . . . ........ .. . ... .
lowQualScore : 2 0 0 3333333333 0 44 7 0000 99 7 2 99 6666 7 0 0 0 22 00 99 1 0 1 99 0 0 6666666666666666666 22 222222 777 7 22 7 5 88 0 5 0 0 000000 0 00 5 0 55 55555555555555 00 55 55555 0 55 0 0 0 5 00 5 5 00 0 5 0 5 0 0 00000 5555 0 5 0 3333333333 333 777 7 33 7777 3 3 0 0 0 8888 22222 0 0 88 7 7 333 7 7 7 0 0 7 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4 0 888 0000 0 22 55 22 555555555555555555555555555555555555555 777 7 0000000000000 0 7 22 7 7 4 88888888 00 2 888 0
consensus : TATGGAAAAAGAAGAANTTGA-TACCT---A--TTNTCAGAATNGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGANTACGTNTTCTGGGATGTCCCAGNCGACAAAGNNTGTGAACAATGTTGNCTGGTTGTTTGTAAGGCTCATTACTACAACTGCACTTTTAACAACGAACCTTTGGTATTAACTCCAATCAGTGGTCAATCGTTTGCTCACACCTCCNANTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAANATCACTGCTNCCGTTTTANACACATTTAATATCCCAGTCAAATGGAACCGGAAGAGGGGATAGTGAGACTACCGTTACTATCACTGGATTCAGA--TT---TAAAACTCCTT---ACAAAGATAC-A-TCGCTGG-NTCTAG-TA-AATGT-TCCACCAA-GCCCNTGTCTTT-ACTCCT----ACAAAGATA---C-ATC-G-CTGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNA-C---AAA-------ATT--ACTGA-C-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTAAA-------------G-A-A-----------TTT-------GAAATCCC---AG-AACT---C------T-TCTCA-AA--TC-AA-CAACATCAAAACGTATGA---CTT-NTCAACACTTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
Reference ( family-10 ) : TATGGAAAAAGAAGAANTTGA-TACCT---A--TTNTCAGAATNGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--AGTT-ACATGAAGANTACGTNTTCTGGGATGTCCCAGNCGACAAAGNNTGTGAACAATGTTGNCTGGTTGTTTGTAAGGCTCATTACTACAACTGCACTTTTAACAACGAACCTTTGGTATTAACTCCAATCAGTGGTCAATCGTTTGCTCACACCTCCNANTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAANATCACTGCTNCCGTTTTANACACATTTAATATCCCAGTCAAATGGAACCGGAAGAGGGGATAGTGAGACTACCGTTACTATCACTGGATTCAGA--TT---TAAAACTCCTT---ACAAAGATAC-A-TCGCTGG-NTCTAG-TA-AATGT-TCCACCAA-GCCCNTGTCTTT-ACTCCT----ACAAAGATA---C-ATC-G-CTGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNA-C---AAA-------ATT--ACTAA-C-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTAAA-------------G-A-A-----------TTT-------GAAATCCC---AG-AACT---C------T-TCTCA-AA--TC-AA-CAACATCAAAACGTATGA---CTT-NTCAACACTTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
gi|1 : TATTGAAAAAGAAGAATGTGAATACCT-------TATC-GAATGGACTAAAAG---CTATTAAGAAGGTTATTGAAA-TCCCGTATTAG--ACA----TGTACGTACCAG-ATAGT-CGTAACC--ATC-T-T--CCGTTCTG-T------G-TTTC----GATTAAA--C-------GGAAGT---GAATCAAT--GAATTAGATA--AGTTCACATGAGGAATATGTATTCTGGGATGTCCCAGCCGACAAAGGCTGTGAACAATATTGATTGGTTGTTTGTAAGGTTCATTACTACAACTGCACTTTTAACAACGAACTTTTGGTATTAACTCCA-TCAGTGGTCAATCGTTTACTCACACCTCCTACTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAAAATCATTGCTTCCGTTTTAAACACATTTAATATCCCAGTCAAATGGAACCGGAAGA----ATAGTGAAACTACCGTTACTATCAATGGATTCAAACCTTCA-TAAAACCCCTTAAAACAAAGATACTATTTGCTGGACTCTAGTTATAATGTCTCCACCAACGCCAGT-TCTTTAACTCCTC---ACGAAAA
gi|1 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcaca-ACCCCTTAAAACAAAGATA---CTATTTG-CTGGACTCTAGTTATAA---TGTCTCC-ACCAACGC-CAGTTCTTTAACTCCTCA-CGAAAAA-------ATC--A-------AG----------GAG---CA--A----CTT-C-GA-----GTT--TG-TG-AACATACAGAAT-T-ATGCCA-GAAGT---GGTGT---AAATCAAAATATGGATTCTTTAAAAAA--CTCTAAAGGAACTTCTAGTGG-A-A-----------TTT-------GAAATCCC---AG-AACT---C------TATCACATAA--TC-AACCAACATCAAAACATATGA---CTTATTCAACACTTTACG--ACCA-TCCGGGCACGATA-AATTAAAGACaatcaaggagcaacttcgagtttgtgaacatacagaattatgccagaagtggtgtaaatcaaaatatggattctttaaaaaactctaaaggaacttctagtggaatttgaaatcccagaactctatcacataatcaaccaacatcaaaacatatgacttattcaacactttacgaccatccgggcacgataaattaaagacaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|10 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcacatattgaaaaagaagaatgtgaataccttatcgaatggactaaaagctattaagaaggttattgaaatcccgtattagacatgtacgtaccagatagtcgtaaccatcttccgttctgtgtttcgattaaacggaagtgaatcaatgaattagataagttcacatgaggaatatgtattctgggatgtcccagccgacaaaggctgtgaacaatattgattggttgtttgtaaggttcattactacaactgcacttttaacaacgaacttttggtattaactccatcagtggtcaatcgtttactcacacctcctactgaccctttcaaagaagacgagatttcttctcaaaatcattgcttccgttttaaacacatttaatatcccagtcaaatggaaccggaagaatagtgaaactaccgttactatcaatggattcaaaccttcataaaAG---CA--G----CTT-CAGG---CGTAT--TA-TGAAAC-TACATA------TGCCA-GAAGT---GGTGA---AAATC-ACATGTGGATTC--TGAAAAAACCTCTAAA-------------G-A-ACGTCTGATAAATGT-------GAAATCCC---AG-AACA---T------T-TTTCT-TA--TC-AG-CAACATCGAAACATGTGA---CCT-CTCAACaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|11 : acttttcaatgcaaagttgaaggTACCTTTACTGGATTCAGAAATTGTATAAAAATCTTT---ACAAAGATGC-A-TCGCTTG-TTCCAG-CA-AGTGC-TCTACCAA-GCCCTTATCCTT-ACTACT----Atccatacatta
gi|11 : T----ACAAAGATG---C-ATC-G-CTTGT-TCCAGC-A-AG---TGC-TCT-ACCAAGCC-CTTATCCTTA-CTACTAA-C---TAA-------CCT--ACTAA-C-AG--CTATT--AAAG---TGTCA----CTT-CAGA-----GATACTGTTGC-AC-TACATAAT------CCA-GAAGT---GGTGT---CAATC-Aactaacctactaacagctattaaagtgtcacttcagagatactgttgcactacataatccagaagtggtgtcaatcag
gi|13 : tacctttactggattcagaaattgtataaaaatcttAAAGAGGAAAAATTTA-TAATT---AACCTTTCAGAATTGG-TAAAAAAAAGTAC-AAGAAGAATATTAAAATTCCCGT-TTAGTTACACCCCTAT-TAAAACAATA-AATATTT--CC--ATCATAT--CC-TTCTG-TTTACTCG-GTTT----A--TAAA--CC------AAAGGT---GA-TTAAA--AAAGTAg
gi|15 : aatagatCCCGTATTAG--ACA----TAT-AAGTACAA-A-AGTCCGTA-CC--A-C-TATAGCC-TTCTGCT------GCTTTCCTGTG--CAAATTCCTTGCAGAGGAGTCGGGA-TCAGACTGAATTAATTAGGGGTT-A-ATGAAt
gi|16 : TGTGAAAAGAGAAGAATTTCA-TG--T---A--TTTTCAGAATGGG-GGAAAT---GTA---AGAAGAATACGAAAA-GTTCATATAAG--ATG----CAT-CATAACAA-A-AGTAGGTA-AT--ATA-TAT--TC-TTTTG-T------G-at
gi|17 : AAAAATAA-AACTTGA-CAC---------TGTCAGAA-------AAAA---GTAT-AAGAGAAATATTAAAA-TCCCATGTTGG--AGA----CAT-CAAAACAA-A-AG-----------------T--CC-TTCTG-T----------------G--TAAA--CC------GGAAGT---G--TGAAA--GAATTGG
gi|19 : ATTGA-TAAAAT---GTAT-AAGAAGAATATTGAAA-CCCCGAATTAG--AAA----GAT-CAAAAGAA-A-AGTGCATA-CCATATC-TAA--CC-TTCTG-T------G-TATC----
gi|2 : TATGGAAAAAGTAGAAATTGA-TACCTTAAA--TTCTCAGAATGGA-TAGAAT---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CAGAATAA-A-AGTGCGTA-CC--ATC-TAT--CG-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGATTACGTTTTC------GTTCCAGGTGACAAAGTGTGTGA-CAATGTTGTCT--TTGTTTGTAAGGCTCATT--------------TTTAA--ACAAACCT--GGTATTAACTCCAATT--TGGT-AATCGT--GCTTACAC-TCCAAATG-CTCTTTCAAA--AGATTAAATT-CTTC--AACATC-CTGTTGCAATTTTACACACATTTAATATCTCAGT-AAATGG-----GAAGAGGGGATA-TGAG-TTACCGTGGCTAT-ACTGGATTC----------TAAAACTTCTT---ACAAAGATAC-A-TTGCGGG-ATCTAG-TA-AATGT-TCCACCAA-GCCCCTGACTTT-ACTCCT----ACAAAGATA---C-ATT-G-CAGGA-TCTAGT-A-AA---TGT-TCC-TCCAAGCC-CCTGACTTTA-CTCCCCA-C---ACA-------ATT--ATTGA-T-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-AACATAACTT-ATACCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TGAAAAA--CTCT-AT-------------G-G-A-----------TTT-------GAAATCCC---AG-ACCT---A------T-TCTTA-AA--TC-AA-CAACATCAAAACGTATTA---CTT-ATCAACACTGTACACTACCATTCC--ACACAATA-AATTAAATAC
gi|21 : -A-AGTAAGTG-CC--ATC-CAT--C--------T------G-TTTC----A--TAAA--CC------ATAAGT---GA-TCAAA--GAAAT---TA--AGAT-ACATAAAAAta
gi|24 : --TTGTCAAAAGTGA-TAAAAA---GTGT-AAGGAGAATATCAAAA-TCCCGTTTTAA--ACA----TAt
gi|5 : CC-ACCA-----CCTGTATTTA-TTCCCAA-C---GAAT------ATT----TGA-C-AA--TTG-T--AAAGGAGCA--A----CTTATAAG---TG--T--TG-GGAATT-TACATA------TGCCA-GAAGT---GGTAT---TAATC-AAATGTTGATTC--TCTAAAG--TGCCAAA-------------G-A-A-----------TTTTAGCAAGGAAATTCC---AA-AAC--------------CTCA-TA--TC-AA-CAACATCAAAAC--ATGATTTTTT-TTCAACATCTTACGCCACCATTCC--CCACGTTATTATTAAAGAC
gi|6 : ttgaaacagaatactattatttccaattcctgccttga----ACAAAGATAACAC-ATC-G-CTGGC-TCCAGT-A-AAAAGTGC-TCT-ACCAAGCCTCCTTTCTTTA-CTTTTTAAC---TAA---------T--ACTAA-C-AG--CTA-TC-AAAGAGTCC--T----CTT-CAGAGATTAAAC--TG-TCCA-C-TACATA------TTCCA-GAAGTT--GGTGT---CAATC-AGATGTGGATT---TTAAAAA--CTCTAAA-------------G-AGA-----------TTT-------TGGATACC---AA-AAAT---CCGAGATT-TCTAA-AA--TTGAA-CTGCAT-AAAACGTATGA-------ATCTA-ACTTTACACAACGATTCC--TCACGATA-AATTAAAaatgttttttaacattattgacaattgatccttcaataaaaatagaaaaaggagcatttatatctagtgatcagccattctagaattactttgttgaactccattctgattttacatgtacttatgtacacacaaatactctgaattgatattaaagcaattctgaagttcccaatttacaatatttttgtagttttgacgattagatcctccaacagtctgttggaattcccacgggcacaaactgtgttcctttgttaatattttttatac
gi|8 : tccgaaattgcataaaaacccttccaaA---T-ATC-GTCTG---TCCAGT-A-GG--------CT-ACCAAGCT-C-TTTCTTTA-CTTTTGG-----ATA-------ACT--ACTAAAC-AGGCCTA-TCAAAAG----A--ATCCTCTT-CAG------GAT------------------AC-T-GTTCCATGAAGTTCAAGTGTGTCAAATC-AGATGTG-ATTC--TT-AAAA--CTCTAAA-------------ACA-G-----------CTT-------AAAATTTTTGAAGAAACTATAC------T-T-TCA-AAAGTC-AG-CTACAatctagctttttcggattacatcgataattgctttttaaacaagaacggaacccgaaaaatacgaattttctagtcgttgggaaacagaacacaatatttgtcagaaaacactctgattgcccaacaagtactctaagtagattattaagagca
gi|9 : cAAT-A-AAC--TGT-TTCTACCAAGCT-ACTAAATTTT-CTCTTCA-C---AAAGACATAAATTGTAGTGG-CGAA--CTG-----ATG---AA--A----CTT-CAGC---TGGAT--TG-TGC--C---CCTAAC-CAATGCCT-GAAGC---GACGC---AAAGC-AAATGTAAATga
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCACTTTTGCCTTATGTCAGGTTACATTTTCACAAAACTTTACTTTGCTCCATTGAGAGTATTGAACAAGTTATTAGAAGATGTCAAAGCTAGTCCACAGTTGGATTCTTCAACACCTGAATGCAATGGTTATGGATGTTGCCATCACAGGCTCTTTAAAGTTCCGCAGATTACGGATAATGATCATTCCAAATAGTGCCACTGGTTCCTTAAGCTAAAAGTTTACTAATAACAGAATAGATGCCGTAAACATAAGCAACATTTTTCGTCATCAAAAAAATTCAGTGTCGTATTTCAGCATTTTTTTTTCAATTCAAGTCACCACCCGGCATTTCCTCCAGATATACTTCCACGATCACATCCAAACATGATTCACAAGGAAACTTTATAGTGCCATATTGGCAATCGTATACTTAGTCCACCCACATGTTCTCTTTTTACTGTAGTTCAACTAGCCATGTCATACTTGATATGTTAATATAATTGTTAGAAAATGAGAATTAAGATCACTTTTTTTAAAAGGTCCTAAATTCAAAGAACCTATGTCATTCAATTGACAATATAACATCACCTTCATAATGAATGCTGTCGAAAAGTATGCCAGACGATGGGTCAAATATGAAAA
Unaligned ( gi|4 ): CCATTGGGTCCACATCACATTCGCACCAAACTTTACTCTGTTTCTTTGAAAAATGTTGTATGAATTACAAGAAAAAAAATAAAGCTAGGGCCTTCTTGGATTCCTCAACATGGGAATACAGACTTGATTATATGATTGTGAATATTGCCTATTACAGACTCTTTGTTCCACCGCGCATTAGTGATGAAAGTGAACTCAAGAAACCTCACCGATTCCTACATCTCAAATTTGACAATAAAGTAATTAATGCTGTCAACATCAAAAACATCCTCAATCATAACAAAGTAGTCCTGCATCCCGCTTTATTTTGAGATGAAATCCACACCTTGTATTTCATACAGATATAGTTCCACTATTGCACCCAAGTTATTTGATTACAAGCAGGCGTTGCAGTACCTAGATATTGAACAATTACAGCGAAATGTTCCTCTTCCTCATTTAATTGTGGTCCCGCTGGTCATATTATTACTTGGGATATAAATATAATCCAAAATGAGGACTTCAGTCCCTTATCTTAAAATGTTCTAAATTCCGAAAACCTCGCTCATTTA
Unaligned ( gi|7 ): CTCAATTTTACGCTACGTCAACTGACGATTAGGTTCACACCGGATTTACAAATAGAAATATACTCTGTTTCATAGAGAGTTCTAAATACGTTAATGAAAAAGCCAAAGCTAGTCCATACCTGGAGTTTTCAACACGCGGAACTAAAAATCCAATTTAGGCCATTGCTGGCTCTTTAAATCACCGCAAATTATGGACGGTATACCTTTCGAATCTCACATCTAGTTTCTGAATCTCAAATCACCAACAAATAAATATGTGCCGTCAAAGGCAACGTTTCTCGTTACAAAAAAGTTTAGTCTTATATTCCAAAATATTTCCAGTTCAATGTTATACCTAGTTTTTCCTACAAATAAACTTACACTATTGC
Unaligned ( gi|12 ): CTGGACATGCCATTACTGGTTATATAAGTATAGATGGAAAAATAAAATAAGGGCTGGAATCACTTATTATAAAAGGTCCTAAATTCAGAGAACCTCAGTCACTCAGTTGGAGACAAAACTCCTAACTCCATTATGAATTATTTCGAAGATTATGCTAGTCGATGGGCC
Unaligned ( gi|14 ): TGAAAAGAGGACTCGAGATCACTTATTTCAAAAGATTCCCAACATTGGCGACAGAACTCCATCTCTGTTACAAATTCCGTCGAAGATTATGTCAGACGATTGGGCTATTATATGAAAAGGAAGTCGG
Unaligned ( gi|18 ): TTCTCAATTGACAATACTATTGTAGTTTGACGATCAGGTGTCGTGCATTCAGTTCCTCTTTCTTTTACGAACTCCCGATGGGCACGAATTTTGTGCGCCTTTTTATTATC
Unaligned ( gi|20 ): ATTGAAGGTATTGAGCAAGTTGATTAGACAATATGTCAAGAAGCATAGTCCACAATCCTTGTGTATTTTTCAACATCTCAGAA
Unaligned ( gi|22 ): ACAATTTCTCAGGTATAATTAAATCTAGGCTCTTTCAGATTACAGAATAACTTGCTTTTTAAA
Unaligned ( gi|23 ): TAAACACTTTTACAAGCGAGGTACATTGCAGAATCCTGTAAATATTCCATCAAGC
Unaligned ( gi|25 ): ATAAAAAAGTAGTCCTGCATCCCGCCTTTTTAAAGATGAAA
Alignments
lowQualScore : 3333333333 1111 1111 1111111111111111111 111111 111 11 1 222222 1 11 55555555555555 11 11 1 11 1 11 1 1 11 1 11 1 1 22222 2222 1 1 1 8888888888 222 111 11 1111 1 1 1 1 2222 11111 11 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 666666666666666666666666666666666666666 111 3333333333333 22222222 111 1
lowQualScore : 3 1 8 9999999999 1 44 5 1111 55 5 2 66 0000 5 1 5 5 88 77 66 0 5 0 66 5 5 8888888888888888888 99 999999 111 6 99 1 3 33 0 2 1 1 999999 1 22 5 1 77 11111111111111 88 88 5 88 5 88 5 1 1 5 88 2 5 88 1 5 1 2 1 5 66666 2222 5 5 2 6666666666 333 777 0 44 3333 3 3 1 2 0 0000 55555 8 8 11 6 6 888 6 5 5 3 1 5 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 5 333 9999 5 99 44 99 222222222222222222222222222222222222222 111 6 7777777777777 1 6 99 6 6 6 00000000 77 3 444 0
lowQualScore : . . . .......... . .. . .... .. . . .. .... . . . . .. .. .. . . . .. . . ................... .. ...... ... . .. . . .. . . . . ...... . .. . . .. .............. .. .. . .. . .. . . . . .. . . .. . . . . . . ..... .... . . . .......... ... ... . .. .... . . . . . .... ..... . . .. . . ... . . . . . . . ............................................................................................... . . ... .... . .. .. .. ....................................... ... . ............. . . .. . . . ........ .. . ... .
lowQualScore : 2 0 0 3333333333 0 44 7 0000 99 7 2 99 6666 7 0 0 0 22 00 99 1 0 1 99 0 0 6666666666666666666 22 222222 777 7 22 7 5 88 0 5 0 0 000000 0 00 5 0 55 55555555555555 00 55 5 00 0 55 0 0 0 5 00 5 5 00 0 5 0 5 0 0 00000 5555 0 5 0 3333333333 333 777 7 33 7777 3 3 0 0 0 8888 22222 0 0 88 7 7 333 7 7 7 0 0 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 0 888 0000 0 22 55 22 555555555555555555555555555555555555555 777 7 0000000000000 0 7 22 7 7 4 88888888 00 2 888 0
consensus : TATGGAAAAAGAAGAANTTGA-TACCT---A--TTNTCAGAATNGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGANTACGTNTTCTGGGATGTCCCAGNCGACAAAGNNTGTGAACAATGTTGNCTGGTTGTTTGTAAGGCTCATTACTACAACTGCACTTTTAACAACGAACCTTTGGTATTAACTCCAATCAGTGGTCAATCGTTTGCTCACACCTCCNANTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAANATCACTGCTNCCGTTTTANACACATTTAATATCCCAGTCAAATGGAACCGGAAGAGGGGATAGTGAGACTACCGTTACTATCACTGGATTCAGA--TT---TAAAACTCCTT---ACAAAGATAC-A-TCGCTGG-NTCTAG-TA-AATGT-TCCACCAA-GCCCNTGTCTTT-ACTCCT----ACAAAGATA---C-ATC-G-CTGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNA-C---AAA-------ATT--ACTGA-C-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTAAA-------------G-A-A-----------TTT-------GAAATCCC---AG-AACT---C------T-TCTCA-AA--TC-AA-CAACATCAAAACGTATGA---CTT-NTCAACACTTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
Reference ( family-10 ) : TATGGAAAAAGAAGAANTTGA-TACCT---A--TTNTCAGAATNGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGANTACGTNTTCTGGGATGTCCCAGNCGACAAAGNNTGTGAACAATGTTGNCTGGTTGTTTGTAAGGCTCATTACTACAACTGCACTTTTAACAACGAACCTTTGGTATTAACTCCAATCAGTGGTCAATCGTTTGCTCACACCTCCNANTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAANATCACTGCTNCCGTTTTANACACATTTAATATCCCAGTCAAATGGAACCGGAAGAGGGGATAGTGAGACTACCGTTACTATCACTGGATTCAGA--TT---TAAAACTCCTT---ACAAAGATAC-A-TCGCTGG-NTCTAG-TA-AATGT-TCCACCAA-GCCCNTGTCTTT-ACTCCT----ACAAAGATA---C-ATC-G-CTGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNA-C---AAA-------ATT--ACTGA-C-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTAAA-------------G-A-A-----------TTT-------GAAATCCC---AG-AACT---C------T-TCTCA-AA--TC-AA-CAACATCAAAACGTATGA---CTT-NTCAACACTTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
gi|1 : TATTGAAAAAGAAGAATGTGAATACCT-------TATC-GAATGGACTAAAAG---CTATTAAGAAGGTTATTGAAA-TCCCGTATTAG--ACA----TGTACGTACCAG-ATAGT-CGTAACC--ATC-T-T--CCGTTCTG-T------G-TTTC----GATTAAA--C-------GGAAGT---GAATCAAT--GAATTAGATA--AGTTCACATGAGGAATATGTATTCTGGGATGTCCCAGCCGACAAAGGCTGTGAACAATATTGATTGGTTGTTTGTAAGGTTCATTACTACAACTGCACTTTTAACAACGAACTTTTGGTATTAACTCC-ATCAGTGGTCAATCGTTTACTCACACCTCCTACTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAAAATCATTGCTTCCGTTTTAAACACATTTAATATCCCAGTCAAATGGAACCGGAAGA----ATAGTGAAACTACCGTTACTATCAATGGATTCAAACCTTCA-TAAAACCCCTTAAAACAAAGATACTATTTGCTGGACTCTAGTTATAATGTCTCCACCAACGCCAGT-TCTTTAACTCCTC---ACGAAAA
gi|1 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcaca-ACCCCTTAAAACAAAGATA---CTATTTG-CTGGACTCTAGTTATAA---TGTCTCC-ACCAACGC-CAGTTCTTTAACTCCTCA-CGAAAAA-------ATC--A-------AG----------GAG---CA--A----CTT-C-GA-----GTT--TG-TG-AACATACAGAAT-T-ATGCCA-GAAGT---GGTGT---AAATCAAAATATGGATTCTTTAAAAAA--CTCTAAAGGAACTTCTAGTGG-A-A-----------TTT-------GAAATCCC---AG-AACT---C------TATCACATAA--TC-AACCAACATCAAAACATATGA---CTTATTCAACACTTTACG--ACCA-TCCGGGCACGATA-AATTAAAGACaatcaaggagcaacttcgagtttgtgaacatacagaattatgccagaagtggtgtaaatcaaaatatggattctttaaaaaactctaaaggaacttctagtggaatttgaaatcccagaactctatcacataatcaaccaacatcaaaacatatgacttattcaacactttacgaccatccgggcacgataaattaaagacaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|10 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcacatattgaaaaagaagaatgtgaataccttatcgaatggactaaaagctattaagaaggttattgaaatcccgtattagacatgtacgtaccagatagtcgtaaccatcttccgttctgtgtttcgattaaacggaagtgaatcaatgaattagataagttcacatgaggaatatgtattctgggatgtcccagccgacaaaggctgtgaacaatattgattggttgtttgtaaggttcattactacaactgcacttttaacaacgaacttttggtattaactccatcagtggtcaatcgtttactcacacctcctactgaccctttcaaagaagacgagatttcttctcaaaatcattgcttccgttttaaacacatttaatatcccagtcaaatggaaccggaagaatagtgaaactaccgttactatcaatggattcaaaccttcataaaAG---CA--G----CTT-CAGG---CGTAT--TA-TGAAAC-TACATA------TGCCA-GAAGT---GGTGA---AAATC-ACATGTGGATTC--TGAAAAAACCTCTAAA-------------G-A-ACGTCTGATAAATGT-------GAAATCCC---AG-AACA---T------T-TTTCT-TA--TC-AG-CAACATCGAAACATGTGA---CCT-CTCAACaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|11 : acttttcaatgcaaagttgaaggTACCTTTACTGGATTCAGAAATTGTATAAAAATCTTT---ACAAAGATGC-A-TCGCTTG-TTCCAG-CA-AGTGC-TCTACCAA-GCCCTTATCCTT-ACTACT----Atccatacatta
gi|11 : T----ACAAAGATG---C-ATC-G-CTTGT-TCCAGC-A-AG---TGC-TCT-ACCAAGCC-CTTATCCTTA-CTACTAA-C---TAA-------CCT--ACTAA-C-AG--CTATT--AAAG---TGTCA----CTT-CAGA-----GATACTGTTGC-AC-TACATAAT------CCA-GAAGT---GGTGT---CAATC-Aactaacctactaacagctattaaagtgtcacttcagagatactgttgcactacataatccagaagtggtgtcaatcag
gi|13 : tacctttactggattcagaaattgtataaaaatcttAAAGAGGAAAAATTTA-TAATT---AACCTTTCAGAATTGG-TAAAAAAAAGTAC-AAGAAGAATATTAAAATTCCCGT-TTAGTTACACCCCTAT-TAAAACAATA-AATATTT--CC--ATCATAT--CC-TTCTG-TTTACTCG-GTTT----A--TAAA--CC------AAAGGT---GA-TTAAA--AAAGTAg
gi|15 : aatagatCCCGTATTAG--ACA----TAT-AAGTACAA-A-AGTCCGTA-CC--A-C-TATAGCC-TTCTGCT------GCTTTCCTGTG--CAAATTCCTTGCAGAGGAGTCGGGA-TCAGACTGAATTAATTAGGGGTT-A-ATGAAt
gi|16 : TGTGAAAAGAGAAGAATTTCA-TG--T---A--TTTTCAGAATGGG-GGAAAT---GTA---AGAAGAATACGAAAA-GTTCATATAAG--ATG----CAT-CATAACAA-A-AGTAGGTA-AT--ATA-TAT--TC-TTTTG-T------G-at
gi|17 : AAAAATAA-AACTTGA-CAC---------TGTCAGAA-------AAAA---GTAT-AAGAGAAATATTAAAA-TCCCATGTTGG--AGA----CAT-CAAAACAA-A-AG-----------------T--CC-TTCTG-T----------------G--TAAA--CC------GGAAGT---G--TGAAA--GAATTGG
gi|19 : ATTGA-TAAAAT---GTAT-AAGAAGAATATTGAAA-CCCCGAATTAG--AAA----GAT-CAAAAGAA-A-AGTGCATA-CCATATC-TAA--CC-TTCTG-T------G-TATC----
gi|2 : TATGGAAAAAGTAGAAATTGA-TACCTTAAA--TTCTCAGAATGGA-TAGAAT---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CAGAATAA-A-AGTGCGTA-CC--ATC-TAT--CG-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGATTACGTTTTC------GTTCCAGGTGACAAAGTGTGTGA-CAATGTTGTCT--TTGTTTGTAAGGCTCATT--------------TTTAA--ACAAACCT--GGTATTAACTCCAATT--TGGT-AATCGT--GCTTACAC-TCCAAATG-CTCTTTCAAA--AGATTAAATT-CTTC--AACATC-CTGTTGCAATTTTACACACATTTAATATCTCAGT-AAATGG-----GAAGAGGGGATA-TGAG-TTACCGTGGCTAT-ACTGGATTC----------TAAAACTTCTT---ACAAAGATAC-A-TTGCGGG-ATCTAG-TA-AATGT-TCCACCAA-GCCCCTGACTTT-ACTCCT----ACAAAGATA---C-ATT-G-CAGGA-TCTAGT-A-AA---TGT-TCC-TCCAAGCC-CCTGACTTTA-CTCCCCA-C---ACA-------ATT--ATTGA-T-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-AACATAACTT-ATACCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TGAAAAA--CTCT-AT-------------G-G-A-----------TTT-------GAAATCCC---AG-ACCT---A------T-TCTTA-AA--TC-AA-CAACATCAAAACGTATTA---CTT-ATCAACACTGTACACTACCATTCC--ACACAATA-AATTAAATAC
gi|21 : -A-AGTAAGTG-CC--ATC-CAT--C--------T------G-TTTC----A--TAAA--CC------ATAAGT---GA-TCAAA--GAAAT---TA--AGAT-ACATAAAAAta
gi|24 : --TTGTCAAAAGTGA-TAAAAA---GTGT-AAGGAGAATATCAAAA-TCCCGTTTTAA--ACA----TAt
gi|5 : CC-ACCA-----CCTGTATTTA-TTCCCAA-C---GAAT------ATT----TGA-C-AA--TTG-T--AAAGGAGCA--A----CTTATAAG---TG--T--TG-GGAATT-TACATA------TGCCA-GAAGT---GGTAT---TAATC-AAATGTTGATTC--TCTAAAG--TGCCAAA-------------G-A-A-----------TTTTAGCAAGGAAATTCC---AA-AAC--------------CTCA-TA--TC-AA-CAACATCAAAAC--ATGATTTTTT-TTCAACATCTTACGCCACCATTCC--CCACGTTATTATTAAAGAC
gi|6 : ttgaaacagaatactattatttccaattcctgccttga----ACAAAGATAACAC-ATC-G-CTGGC-TCCAGT-A-AAAAGTGC-TCT-ACCAAGCCTCCTTTCTTTA-CTTTTTAAC---TAA---------T--ACTAA-C-AG--CTA-TC-AAAGAGTCC--T----CTT-CAGAGATTAAAC--TG-TCCA-C-TACATA------TTCCA-GAAGTT--GGTGT---CAATC-AGATGTGGATT---TTAAAAA--CTCTAAA-------------G-AGA-----------TTT-------TGGATACC---AA-AAAT---CCGAGATT-TCTAA-AA--TTGAA-CTGCAT-AAAACGTATGA-------ATCTA-ACTTTACACAACGATTCC--TCACGATA-AATTAAAaatgttttttaacattattgacaattgatccttcaataaaaatagaaaaaggagcatttatatctagtgatcagccattctagaattactttgttgaactccattctgattttacatgtacttatgtacacacaaatactctgaattgatattaaagcaattctgaagttcccaatttacaatatttttgtagttttgacgattagatcctccaacagtctgttggaattcccacgggcacaaactgtgttcctttgttaatattttttatac
gi|8 : tccgaaattgcataaaaacccttccaaA---T-ATC-GTCTG---TCCAGT-A-GG--------CT-ACCAAGCT-C-TTTCTTTA-CTTTTGG-----ATA-------ACT--ACTAAAC-AGGCCTA-TCAAAAG----A--ATCCTCTT-CAG------GAT------------------AC-T-GTTCCATGAAGTTCAAGTGTGTCAAATC-AGATGTG-ATTC--TT-AAAA--CTCTAAA-------------ACA-G-----------CTT-------AAAATTTTTGAAGAAACTATAC------T-T-TCA-AAAGTC-AG-CTACAatctagctttttcggattacatcgataattgctttttaaacaagaacggaacccgaaaaatacgaattttctagtcgttgggaaacagaacacaatatttgtcagaaaacactctgattgcccaacaagtactctaagtagattattaagagca
gi|9 : cAAT-A-AAC--TGT-TTCTACCAAGCT-ACTAAATTTT-CTCTTCA-C---AAAGACATAAATTGTAGTGG-CGAA--CTG-----ATG---AA--A----CTT-CAGC---TGGAT--TG-TGC--C---CCTAAC-CAATGCCT-GAAGC---GACGC---AAAGC-AAATGTAAATga
blockSeqs : A A . CCTTAAAT T TT . AAAA C T A TT CCCC . A T . AT A AT A AG . C TTACTCGGTTTA TT TTGCAG CGG . CT A T GG . C T T . G TG . T . . . . A . . . . A A . . T . . C . G A C . . GGGG . . T AGAAATTGTA . A T CA . . T A . TAAA ACAC . T T . . AAG . T T T A . A CAAAGACATAAATTGTAGTGGCGAACTGATGAAACTTCAGCTGGATTGTGCCCCTAACCAA G T TCA GTCA . . GA AC GAACGTCTGATAAATGT TGA A TCCGAGATT T . AG G . A TTTTTTT CT T A T
blockSeqs : G T . ATTAACC T TG . T T . A . . . G . . CC A . . . . . GCTTTCCTGTG . . . . . A A . . C . . . A A TA . . C G . . C . . A . . C . . . C G . C CTAACCTACTAACAGCTATTAAAGTGTCACTTCAGAGATACTGTTGCACTACATAAT A . T A . . GA . GAATTTTAGCAAG . . TATACT C . . . . G CCTC CC T C .
blockSeqs : G C . TAT G TT . A T . G . . . T . . AG A . . . . . GTTTCG . . . . . G . . . . . . C . . C . . . . . . C G . A CACAATTATTGATAGCTGTAAAGCAACTTCAGATGGATTGTGCAACAACATAACTTA G . . C . . CT . GAGATTT . . ATT C . . . . G CTTA CA T T .
blockSeqs : . A . C C TG . T T . A . . . A . . GC A . . . . . GTTTCA . . . . . A . T . . . . . . . . . C T . T ACTAATACTAACAGCTATCAAAGAGTCCTCTTCAGAGATTAAACTGTCCACTACATA T . . A . . TA . ACAGCTT . . TAT C . . . . . A
blockSeqs : G GT . T T . A . . . A . . GC G . . . . . G . . . . . . . . . . . . . C T . G CGAATATTTGACAATTGTAAAGGAGCAACTTATAAGTGTTGGGAATTTACATA T . . T . . T . GGATTT . . . . . . . .
blockSeqs : . . A . . T . . . G . . AA . . . . . . . . . A . C ATAACTACTAAACAGGCCTATCAAAAGAATCCTCTTCAGGATACTG G . . C .
blockSeqs : . . . . . . . . . . . . . . . A .
blockSeqCons : NC******** T* AC A* GTTTCG************* **** C**** N* ** GAGATTT******************************** TCANT******** CCTN****
originalCons : TATGGAAAAAGAAGAANTTGA-TACCT---A--TTNTCAGAATNGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGANTACGTNTTCTGGGATGTCCCAGNCGACAAAGNNTGTGAACAATGTTGNCTGGTTGTTTGTAAGGCTCATTACTACAACTGCACTTTTAACAACGAACCTTTGGTATTAACTCCAATCAGTGGTCAATCGTTTGCTCACACCTCCNANTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAANATCACTGCTNCCGTTTTANACACATTTAATATCCCAGTCAAATGGAACCGGAAGAGGGGATAGTGAGACTACCGTTACTATCACTGGATTCAGA--TT---TAAAACTCCTT---ACAAAGATAC-A-TCGCTGG-NTCTAG-TA-AATGT-TCCACCAA-GCCCNTGTCTTT-ACTCCT----ACAAAGATA---C-ATC-G-CTGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNA-C---AAA-------ATT--ACTGA-C-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTAAA-------------G-A-A-----------TTT-------GAAATCCC---AG-AACT---C------T-TCTCA-AA--TC-AA-CAACATCAAAACGTATGA---CTT-NTCAACACTTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
finalCons : TATGGAAAAAGAAGAANTTGA-TANC--------TNTCAGAATNGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-TGTTTCG-------------TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGANTACGTNTTCTGGGATGTCCCAGNCGACAAAGNNTGTGAACAATGTTGNCTGGTTGTTTGTAAGGCTCATTACTACAACTGCACTTTTAACAACGAACCTTTGGTATTAACTCCAATCAGTGGTCAATCGTTTGCTCACACCTCCNANTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAANATCACTGCTNCCGTTTTANACACATTTAATATCCCAGTCAAATGGAACCGGAAGAGGGGATAGTGAGACTACCGTTACTATCACTGGATTCAGA--TT---TAAAACTCCTT---ACAAAGATAC-A-TCGCTGG-NTCTAG-TA-AATGT-TCCACCAA-GCCCNTGTCTTT-ACTCCT----ACAAAGATAC----ATC-G-CTGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNA-C---AAA-------ATT--ACTGA-C-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTAAAGAGATTT--------------------------------GAAATCCC---AG-AACTCANT--------TCTCA-AA--TC-AA-CAACATCAAAACGTATGACCTN----TCAACACTTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCACTTTTGCCTTATGTCAGGTTACATTTTCACAAAACTTTACTTTGCTCCATTGAGAGTATTGAACAAGTTATTAGAAGATGTCAAAGCTAGTCCACAGTTGGATTCTTCAACACCTGAATGCAATGGTTATGGATGTTGCCATCACAGGCTCTTTAAAGTTCCGCAGATTACGGATAATGATCATTCCAAATAGTGCCACTGGTTCCTTAAGCTAAAAGTTTACTAATAACAGAATAGATGCCGTAAACATAAGCAACATTTTTCGTCATCAAAAAAATTCAGTGTCGTATTTCAGCATTTTTTTTTCAATTCAAGTCACCACCCGGCATTTCCTCCAGATATACTTCCACGATCACATCCAAACATGATTCACAAGGAAACTTTATAGTGCCATATTGGCAATCGTATACTTAGTCCACCCACATGTTCTCTTTTTACTGTAGTTCAACTAGCCATGTCATACTTGATATGTTAATATAATTGTTAGAAAATGAGAATTAAGATCACTTTTTTTAAAAGGTCCTAAATTCAAAGAACCTATGTCATTCAATTGACAATATAACATCACCTTCATAATGAATGCTGTCGAAAAGTATGCCAGACGATGGGTCAAATATGAAAA
Unaligned ( gi|4 ): CCATTGGGTCCACATCACATTCGCACCAAACTTTACTCTGTTTCTTTGAAAAATGTTGTATGAATTACAAGAAAAAAAATAAAGCTAGGGCCTTCTTGGATTCCTCAACATGGGAATACAGACTTGATTATATGATTGTGAATATTGCCTATTACAGACTCTTTGTTCCACCGCGCATTAGTGATGAAAGTGAACTCAAGAAACCTCACCGATTCCTACATCTCAAATTTGACAATAAAGTAATTAATGCTGTCAACATCAAAAACATCCTCAATCATAACAAAGTAGTCCTGCATCCCGCTTTATTTTGAGATGAAATCCACACCTTGTATTTCATACAGATATAGTTCCACTATTGCACCCAAGTTATTTGATTACAAGCAGGCGTTGCAGTACCTAGATATTGAACAATTACAGCGAAATGTTCCTCTTCCTCATTTAATTGTGGTCCCGCTGGTCATATTATTACTTGGGATATAAATATAATCCAAAATGAGGACTTCAGTCCCTTATCTTAAAATGTTCTAAATTCCGAAAACCTCGCTCATTTA
Unaligned ( gi|7 ): CTCAATTTTACGCTACGTCAACTGACGATTAGGTTCACACCGGATTTACAAATAGAAATATACTCTGTTTCATAGAGAGTTCTAAATACGTTAATGAAAAAGCCAAAGCTAGTCCATACCTGGAGTTTTCAACACGCGGAACTAAAAATCCAATTTAGGCCATTGCTGGCTCTTTAAATCACCGCAAATTATGGACGGTATACCTTTCGAATCTCACATCTAGTTTCTGAATCTCAAATCACCAACAAATAAATATGTGCCGTCAAAGGCAACGTTTCTCGTTACAAAAAAGTTTAGTCTTATATTCCAAAATATTTCCAGTTCAATGTTATACCTAGTTTTTCCTACAAATAAACTTACACTATTGC
Unaligned ( gi|12 ): CTGGACATGCCATTACTGGTTATATAAGTATAGATGGAAAAATAAAATAAGGGCTGGAATCACTTATTATAAAAGGTCCTAAATTCAGAGAACCTCAGTCACTCAGTTGGAGACAAAACTCCTAACTCCATTATGAATTATTTCGAAGATTATGCTAGTCGATGGGCC
Unaligned ( gi|14 ): TGAAAAGAGGACTCGAGATCACTTATTTCAAAAGATTCCCAACATTGGCGACAGAACTCCATCTCTGTTACAAATTCCGTCGAAGATTATGTCAGACGATTGGGCTATTATATGAAAAGGAAGTCGG
Unaligned ( gi|18 ): TTCTCAATTGACAATACTATTGTAGTTTGACGATCAGGTGTCGTGCATTCAGTTCCTCTTTCTTTTACGAACTCCCGATGGGCACGAATTTTGTGCGCCTTTTTATTATC
Unaligned ( gi|20 ): ATTGAAGGTATTGAGCAAGTTGATTAGACAATATGTCAAGAAGCATAGTCCACAATCCTTGTGTATTTTTCAACATCTCAGAA
Unaligned ( gi|22 ): ACAATTTCTCAGGTATAATTAAATCTAGGCTCTTTCAGATTACAGAATAACTTGCTTTTTAAA
Unaligned ( gi|23 ): TAAACACTTTTACAAGCGAGGTACATTGCAGAATCCTGTAAATATTCCATCAAGC
Unaligned ( gi|25 ): ATAAAAAAGTAGTCCTGCATCCCGCCTTTTTAAAGATGAAA
Alignments
lowQualScore : 444444444444444 1111 1111 1111111111111111111 111111 111 11 1 222222 1 11 55555555555555 11 11 22222 1 11 1 1 11 1 11 1 1 22222 2222 1 1 1 8888888888 222 111 11 1111 1 1 1 1 2222 11111 11 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 111 6666666666666666 2222222 111 4444444444 22222222 111 1
lowQualScore : 3 1 8 777777777777777 44 5 1111 55 5 2 66 0000 5 1 5 5 88 77 66 0 5 0 66 5 5 8888888888888888888 99 999999 111 6 99 1 3 33 0 2 1 1 999999 1 22 5 1 77 11111111111111 88 88 22222 5 88 5 1 1 5 88 2 5 88 1 5 1 2 1 5 66666 2222 5 5 2 6666666666 333 777 0 44 3333 3 3 1 2 0 0000 55555 8 8 11 6 6 888 6 5 5 3 1 5 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 5 333 9999 5 99 1 000 8888888888888888 1111111 111 6 2222222222 1 6 99 6 6 6 66666666 77 3 444 0
lowQualScore : . . . ............... .. . .... .. . . .. .... . . . . .. .. .. . . . .. . . ................... .. ...... ... . .. . . .. . . . . ...... . .. . . .. .............. .. .. ..... . .. . . . . .. . . .. . . . . . . ..... .... . . . .......... ... ... . .. .... . . . . . .... ..... . . .. . . ... . . . . . . . ............................................................................................... . . ... .... . .. . ... ................ ....... ... . .......... . . .. . . . ........ .. . ... .
lowQualScore : 2 0 0 888888888888888 44 7 0000 99 7 2 99 6666 7 0 0 0 22 00 99 1 0 1 99 0 0 6666666666666666666 22 222222 777 7 22 7 5 88 0 5 0 0 000000 0 00 5 0 55 55555555555555 00 55 55555 0 55 0 0 0 5 00 5 5 00 0 5 0 5 0 0 00000 5555 0 5 0 3333333333 333 777 7 33 7777 3 3 0 0 0 8888 22222 0 0 88 7 7 333 7 7 7 0 0 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 0 888 0000 0 22 0 888 7777777777777777 7777777 777 7 2222222222 0 7 22 7 7 4 66666666 00 2 888 0
consensus : TATGGAAAAAGAAGAANTTGA-TAC-----CTT------TCAGAATNGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGANTACGTNTTCTGGGATGTCCCAGNCGACAAAGNNTGTGAACAATGTTGNCTGGTTGTTTGTAAGGCTCATTACTACAACTGCACTTTTAACAACGAACCTTTGGTATTAACTCCAATCAGTGGTCAATCGTTTGCTCACACCTCCNANTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAANATCACTGCTNCCGTTTTANACACATTTAATATCCCAGTCAAATGGAACCGGAAGAGGGGATAGTGAGACTACCGTTACTATCACTGGATTCAGA--TT---TAAAACTCCTT---ACAAAGATAC-A-TCGCTGG-NTCTAG-TA-AATGT-TCCACCAA-GCCCNTGTCTTT-ACTCCT----ACAAAGATA---C-ATC-G-CTGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNA-C---AAA-------ATT--ACTGA-C-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTAAAG----------AG----ATTT-------GAAATCCC---AG-AACT-C----ATTTCTCA-AA--TC-AA-CAACATCAAAACGTATGA---CTT-NTCAACACTTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
Reference ( family-10 ) : TATGGAAAAAGAAGAANTTGA-TAN-----CTN------TCAGAATNGA-TAAAAN---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CANAACAA-A-AGTACGTA-CC--ATC-TAT--CC-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGANTACGTNTTCTGGGATGTCCCAGNCGACAAAGNNTGTGAACAATGTTGNCTGGTTGTTTGTAAGGCTCATTACTACAACTGCACTTTTAACAACGAACCTTTGGTATTAACTCCAATCAGTGGTCAATCGTTTGCTCACACCTCCNANTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAANATCACTGCTNCCGTTTTANACACATTTAATATCCCAGTCAAATGGAACCGGAAGAGGGGATAGTGAGACTACCGTTACTATCACTGGATTCAGA--TT---TAAAACTCCTT---ACAAAGATAC-A-TCGCTGG-NTCTAG-TA-AATGT-TCCACCAA-GCCCNTGTCTTT-ACTCCT----ACAAAGATA---C-ATC-G-CTGGN-TCCAGT-A-AA---TGT-TCC-ACCAAGCC-CCTNTCTTTA-CTCCTNA-C---AAA-------ATT--ACTGA-C-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-TACATAAC-T-ATGCCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TNAAAAA--CTCTAAAG----------AG----ATTT-------GAAATCCC---AG-AACT-C----ANTTCTCA-AA--TC-AA-CAACATCAAAACGTATGA---CCT-NTCAACACTTTACGCNACCATTCC--NCACGATA-AATTAAAGAC
gi|1 : TATTGAAAAAGAAGAATGTGAATAC-----CTTA-----TC-GAATGGACTAAAAG---CTATTAAGAAGGTTATTGAAA-TCCCGTATTAG--ACA----TGTACGTACCAG-ATAGT-CGTAACC--ATC-T-T--CCGTTCTG-T------G-TTTC----GATTAAA--C-------GGAAGT---GAATCAAT--GAATTAGATA--AGTTCACATGAGGAATATGTATTCTGGGATGTCCCAGCCGACAAAGGCTGTGAACAATATTGATTGGTTGTTTGTAAGGTTCATTACTACAACTGCACTTTTAACAACGAACTTTTGGTATTAACTCCA-TCAGTGGTCAATCGTTTACTCACACCTCCTACTGACCCTTTCAAAGAAGACGAGATTTCTTCTCAAAATCATTGCTTCCGTTTTAAACACATTTAATATCCCAGTCAAATGGAACCGGAAGA----ATAGTGAAACTACCGTTACTATCAATGGATTCAAACCTTCA-TAAAACCCCTTAAAACAAAGATACTATTTGCTGGACTCTAGTTATAATGTCTCCACCAACGCCAGT-TCTTTAACTCCTC---ACGAAAA
gi|1 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcaca-ACCCCTTAAAACAAAGATA---CTATTTG-CTGGACTCTAGTTATAA---TGTCTCC-ACCAACGC-CAGTTCTTTAACTCCTCA-CGAAAAA-------ATC--A-------AG----------GAG---CA--A----CTT-C-GA-----GTT--TG-TG-AACATACAGAAT-T-ATGCCA-GAAGT---GGTGT---AAATCAAAATATGGATTCTTTAAAAAA--CTCTAAAGGAACTTCT--AGTGGAATTT-------GAAATCCC---AG-AACT-C-----TATCACATAA--TC-AACCAACATCAAAACATATGA---CTTATTCAACACTTTACG--ACCA-TCCGGGCACGATA-AATTAAAGACaatcaaggagcaacttcgagtttgtgaacatacagaattatgccagaagtggtgtaaatcaaaatatggattctttaaaaaactctaaaggaacttctagtggaatttgaaatcccagaactctatcacataatcaaccaacatcaaaacatatgacttattcaacactttacgaccatccgggcacgataaattaaagacaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|10 : tggacatgtcattacaggtttgattgtaaatatagtttgaaatgagggatctcaagatcaacttatttcaaaaggttcccaaattccagagaacctcagtcatttattgagcgacagaacttcatctccattatgattctgtcgaagatgtactggccagacgatgaggtcacatattgaaaaagaagaatgtgaataccttatcgaatggactaaaagctattaagaaggttattgaaatcccgtattagacatgtacgtaccagatagtcgtaaccatcttccgttctgtgtttcgattaaacggaagtgaatcaatgaattagataagttcacatgaggaatatgtattctgggatgtcccagccgacaaaggctgtgaacaatattgattggttgtttgtaaggttcattactacaactgcacttttaacaacgaacttttggtattaactccatcagtggtcaatcgtttactcacacctcctactgaccctttcaaagaagacgagatttcttctcaaaatcattgcttccgttttaaacacatttaatatcccagtcaaatggaaccggaagaatagtgaaactaccgttactatcaatggattcaaaccttcataaaAG---CA--G----CTT-CAGG---CGTAT--TA-TGAAAC-TACATA------TGCCA-GAAGT---GGTGA---AAATC-ACATGTGGATTC--TGAAAAAACCTCTAAAGAACGTCTGATAA----ATGT-------GAAATCCC---AG-AA---C----ATTTTTCT-TA--TC-AG-CAACATCGAAACATGTGA---CCT-CTCAACaaggactttgctaaacatataggacagttgcttctttaacaaaaatggaaaaaggaaatattcttatctagtgatcaaccattcctcaaaaattattttgttaaactccactctgaggatttctccgttcacctgatca
gi|11 : acttttcaatgcaaagttgaaggTACCTTTACTGGATTCAGAAATTGTATAAAAATCTTT---ACAAAGATGC-A-TCGCTTG-TTCCAG-CA-AGTGC-TCTACCAA-GCCCTTATCCTT-ACTACT----Atccatacatta
gi|11 : T----ACAAAGATG---C-ATC-G-CTTGT-TCCAGC-A-AG---TGC-TCT-ACCAAGCC-CTTATCCTTA-CTACTAA-C---TAA-------CCT--ACTAA-C-AG--CTATT--AAAG---TGTCA----CTT-CAGA-----GATACTGTTGC-AC-TACATAAT------CCA-GAAGT---GGTGT---CAATC-Aactaacctactaacagctattaaagtgtcacttcagagatactgttgcactacataatccagaagtggtgtcaatcag
gi|13 : tacctttactggattcagaaattgtataaaaatcttAAAGAGGAAAAATTTA-TAATTAACCTT------TCAGAATTGG-TAAAAAAAAGTAC-AAGAAGAATATTAAAATTCCCGT-TTAGTTACACCCCTAT-TAAAACAATA-AATATTT--CC--ATCATAT--CC-TTCTG-TTTACTCG-GTTT----A--TAAA--CC------AAAGGT---GA-TTAAA--AAAGTAg
gi|15 : aatagatCCCGTATTAG--ACA----TAT-AAGTACAA-A-AGTCCGTA-CC--A-C-TATAGCC-TTCTGCT------GCTTTCCTGTG--CAAATTCCTTGCAGAGGAGTCGGGA-TCAGACTGAATTAATTAGGGGTT-A-ATGAAt
gi|16 : TGTGAAAAGAGAAGAATTTCA-TGTA----TTT------TCAGAATGGG-GGAAAT---GTA---AGAAGAATACGAAAA-GTTCATATAAG--ATG----CAT-CATAACAA-A-AGTAGGTA-AT--ATA-TAT--TC-TTTTG-T------G-at
gi|17 : AAAAATAA-AACTTGA-CA------CTG------TCAGAA-------AAAA---GTAT-AAGAGAAATATTAAAA-TCCCATGTTGG--AGA----CAT-CAAAACAA-A-AG-----------------T--CC-TTCTG-T----------------G--TAAA--CC------GGAAGT---G--TGAAA--GAATTGG
gi|19 : ATTGA-TAAAAT---GTAT-AAGAAGAATATTGAAA-CCCCGAATTAG--AAA----GAT-CAAAAGAA-A-AGTGCATA-CCATATC-TAA--CC-TTCTG-T------G-TATC----
gi|2 : TATGGAAAAAGTAGAAATTGA-TAC-----CTTAAATTCTCAGAATGGA-TAGAAT---GTAT-AAGAAGAATATTAAAA-TCCCGTATTAG--ACA----TAT-CAGAATAA-A-AGTGCGTA-CC--ATC-TAT--CG-TTCTG-T------G-TTTC----G--TAAA--CC------GGAAGT---GA-TCAAA--GAATTAGATA--GGTT-ACATGAAGATTACGTTTTC------GTTCCAGGTGACAAAGTGTGTGA-CAATGTTGTCT--TTGTTTGTAAGGCTCATT--------------TTTAA--ACAAACCT--GGTATTAACTCCAATT--TGGT-AATCGT--GCTTACAC-TCCAAATG-CTCTTTCAAA--AGATTAAATT-CTTC--AACATC-CTGTTGCAATTTTACACACATTTAATATCTCAGT-AAATGG-----GAAGAGGGGATA-TGAG-TTACCGTGGCTAT-ACTGGATTC----------TAAAACTTCTT---ACAAAGATAC-A-TTGCGGG-ATCTAG-TA-AATGT-TCCACCAA-GCCCCTGACTTT-ACTCCT----ACAAAGATA---C-ATT-G-CAGGA-TCTAGT-A-AA---TGT-TCC-TCCAAGCC-CCTGACTTTA-CTCCCCA-C---ACA-------ATT--ATTGA-T-AG--CTG-T--AAAG---CA--A----CTT-CAGA---TGGAT--TG-TGCAAC-AACATAACTT-ATACCA-GAAGT---GGTGT---AAATC-AAATGTGGATTC--TGAAAAA--CTCT--AT----------GG----ATTT-------GAAATCCC---AG-ACCT-------ATTCTTA-AA--TC-AA-CAACATCAAAACGTATTA---CTT-ATCAACACTGTACACTACCATTCC--ACACAATA-AATTAAATAC
gi|21 : -A-AGTAAGTG-CC--ATC-CAT--C--------T------G-TTTC----A--TAAA--CC------ATAAGT---GA-TCAAA--GAAAT---TA--AGAT-ACATAAAAAta
gi|24 : TG------TCAAAAGTGA-TAAAAA---GTGT-AAGGAGAATATCAAAA-TCCCGTTTTAA--ACA----TAt
gi|5 : tCC-ACCA-----CCTGTATTTA-TTCCCAA-C---GAAT------ATT----TGA-C-AA--TTG-T--AAAGGAGCA--A----CTTATAAG---TG--T--TG-GGAATT-TACATA------TGCCA-GAAGT---GGTAT---TAATC-AAATGTTGATTC--TCTAAAG--TGCCAAAG----------A-----ATTTTAGCAAGGAAATTCC---AA-AAC-----------CTCA-TA--TC-AA-CAACATCAAAAC--ATGATTTTTT-TTCAACATCTTACGCCACCATTCC--CCACGTTATTATTAAAGAC
gi|6 : ttgaaacagaatactattatttccaattcctgccttga----ACAAAGATAACAC-ATC-G-CTGGC-TCCAGT-A-AAAAGTGC-TCT-ACCAAGCCTCCTTTCTTTA-CTTTTTAAC---TAA---------T--ACTAA-C-AG--CTA-TC-AAAGAGTCC--T----CTT-CAGAGATTAAAC--TG-TCCA-C-TACATA------TTCCA-GAAGTT--GGTGT---CAATC-AGATGTGGATT---TTAAAAA--CTCTAAAG----------AG----ATTT-------TGGATACC---AA-AAAT-CCGAGATTTCTAA-AA--TTGAA-CTGCAT-AAAACGTATGA-------ATCTA-ACTTTACACAACGATTCC--TCACGATA-AATTAAAaatgttttttaacattattgacaattgatccttcaataaaaatagaaaaaggagcatttatatctagtgatcagccattctagaattactttgttgaactccattctgattttacatgtacttatgtacacacaaatactctgaattgatattaaagcaattctgaagttcccaatttacaatatttttgtagttttgacgattagatcctccaacagtctgttggaattcccacgggcacaaactgtgttcctttgttaatattttttatac
gi|8 : tccgaaattgcataaaaacccttccaaA---T-ATC-GTCTG---TCCAGT-A-GG--------CT-ACCAAGCT-C-TTTCTTTA-CTTTTGG-----ATA-------ACT--ACTAAAC-AGGCCTA-TCAAAAG----A--ATCCTCTT-CAG------GAT------------------AC-T-GTTCCATGAAGTTCAAGTGTGTCAAATC-AGATGTG-ATTC--TTAAAA---CTCTAAAA----------CA----GCTT-------AAAATTTTTGAAGAAACTAT----ACTT-TCA-AAAGTC-AG-CTACAatctagctttttcggattacatcgataattgctttttaaacaagaacggaacccgaaaaatacgaattttctagtcgttgggaaacagaacacaatatttgtcagaaaacactctgattgcccaacaagtactctaagtagattattaagagca
gi|9 : cAAT-A-AAC--TGT-TTCTACCAAGCT-ACTAAATTTT-CTCTTCA-C---AAAGACATAAATTGTAGTGG-CGAA--CTG-----ATG---AA--A----CTT-CAGC---TGGAT--TG-TGC--C---CCTAAC-CAATGCCT-GAAGC---GACGC---AAAGC-AAATGTAAATga
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCACTTTTGCCTTATGTCAGGTTACATTTTCACAAAACTTTACTTTGCTCCATTGAGAGTATTGAACAAGTTATTAGAAGATGTCAAAGCTAGTCCACAGTTGGATTCTTCAACACCTGAATGCAATGGTTATGGATGTTGCCATCACAGGCTCTTTAAAGTTCCGCAGATTACGGATAATGATCATTCCAAATAGTGCCACTGGTTCCTTAAGCTAAAAGTTTACTAATAACAGAATAGATGCCGTAAACATAAGCAACATTTTTCGTCATCAAAAAAATTCAGTGTCGTATTTCAGCATTTTTTTTTCAATTCAAGTCACCACCCGGCATTTCCTCCAGATATACTTCCACGATCACATCCAAACATGATTCACAAGGAAACTTTATAGTGCCATATTGGCAATCGTATACTTAGTCCACCCACATGTTCTCTTTTTACTGTAGTTCAACTAGCCATGTCATACTTGATATGTTAATATAATTGTTAGAAAATGAGAATTAAGATCACTTTTTTTAAAAGGTCCTAAATTCAAAGAACCTATGTCATTCAATTGACAATATAACATCACCTTCATAATGAATGCTGTCGAAAAGTATGCCAGACGATGGGTCAAATATGAAAA
Unaligned ( gi|4 ): CCATTGGGTCCACATCACATTCGCACCAAACTTTACTCTGTTTCTTTGAAAAATGTTGTATGAATTACAAGAAAAAAAATAAAGCTAGGGCCTTCTTGGATTCCTCAACATGGGAATACAGACTTGATTATATGATTGTGAATATTGCCTATTACAGACTCTTTGTTCCACCGCGCATTAGTGATGAAAGTGAACTCAAGAAACCTCACCGATTCCTACATCTCAAATTTGACAATAAAGTAATTAATGCTGTCAACATCAAAAACATCCTCAATCATAACAAAGTAGTCCTGCATCCCGCTTTATTTTGAGATGAAATCCACACCTTGTATTTCATACAGATATAGTTCCACTATTGCACCCAAGTTATTTGATTACAAGCAGGCGTTGCAGTACCTAGATATTGAACAATTACAGCGAAATGTTCCTCTTCCTCATTTAATTGTGGTCCCGCTGGTCATATTATTACTTGGGATATAAATATAATCCAAAATGAGGACTTCAGTCCCTTATCTTAAAATGTTCTAAATTCCGAAAACCTCGCTCATTTA
Unaligned ( gi|7 ): CTCAATTTTACGCTACGTCAACTGACGATTAGGTTCACACCGGATTTACAAATAGAAATATACTCTGTTTCATAGAGAGTTCTAAATACGTTAATGAAAAAGCCAAAGCTAGTCCATACCTGGAGTTTTCAACACGCGGAACTAAAAATCCAATTTAGGCCATTGCTGGCTCTTTAAATCACCGCAAATTATGGACGGTATACCTTTCGAATCTCACATCTAGTTTCTGAATCTCAAATCACCAACAAATAAATATGTGCCGTCAAAGGCAACGTTTCTCGTTACAAAAAAGTTTAGTCTTATATTCCAAAATATTTCCAGTTCAATGTTATACCTAGTTTTTCCTACAAATAAACTTACACTATTGC
Unaligned ( gi|12 ): CTGGACATGCCATTACTGGTTATATAAGTATAGATGGAAAAATAAAATAAGGGCTGGAATCACTTATTATAAAAGGTCCTAAATTCAGAGAACCTCAGTCACTCAGTTGGAGACAAAACTCCTAACTCCATTATGAATTATTTCGAAGATTATGCTAGTCGATGGGCC
Unaligned ( gi|14 ): TGAAAAGAGGACTCGAGATCACTTATTTCAAAAGATTCCCAACATTGGCGACAGAACTCCATCTCTGTTACAAATTCCGTCGAAGATTATGTCAGACGATTGGGCTATTATATGAAAAGGAAGTCGG
Unaligned ( gi|18 ): TTCTCAATTGACAATACTATTGTAGTTTGACGATCAGGTGTCGTGCATTCAGTTCCTCTTTCTTTTACGAACTCCCGATGGGCACGAATTTTGTGCGCCTTTTTATTATC
Unaligned ( gi|20 ): ATTGAAGGTATTGAGCAAGTTGATTAGACAATATGTCAAGAAGCATAGTCCACAATCCTTGTGTATTTTTCAACATCTCAGAA
Unaligned ( gi|22 ): ACAATTTCTCAGGTATAATTAAATCTAGGCTCTTTCAGATTACAGAATAACTTGCTTTTTAAA
Unaligned ( gi|23 ): TAAACACTTTTACAAGCGAGGTACATTGCAGAATCCTGTAAATATTCCATCAAGC
Unaligned ( gi|25 ): ATAAAAAAGTAGTCCTGCATCCCGCCTTTTTAAAGATGAAA