lowQualScore : 111111111 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111 1111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 22 000000000 4444444444444 22222 1 4444 88888888 1 77777 4444444 4444 4 5555555 3333333333333333333333333333333333333333333333333333333333 66666666666666666 33 8888888888888888 1 1 1 111111 111 11 222 1 666666666666666666666 222222222 222 111111 3333333333333333333333333333333333333 11 1 1 1 11 2 22222222 1 111 1 333333 4444444444444 1 22222 222 1111 111 1 222222 111 11111 11 11 22222 222 1 11 111 22222 22222 1111 11 11 11 1111 1111111 8888888888888888888 1 9999999999999999 4444444444444444444444444444444444 11 111 11 2222 111 1 1 1 11 1 11 11 1 111 222222 11 2222222222222222222222222222 1 1111 1 1 1 1111111 222222 33333 1
lowQualScore : 11 555555555 8888888888888 88888 0 2 2 2 3 4444 44444444 5 22222 4 6666666 4 1111 2 0 2 3 6 6 0000000 2222222222222222222222222222222222222222222222222222222222 3 44444444444444444 2 88 1111111111111111 6 1 66 5 4 5 444444 000 00 444 8 4 0 444444444444444444444 111111111 000 6 999999 8888888888888888888888888888888888888 77 1 3 3 2 6 8 6 0 8 0 5 00 8 1 8 99999999 5 5 4 1 6 1 2 8 3 5 444 2 000000 6 6 2222222222222 0 33333 55 6 4 555 3 6 2 2222 444 5 555555 111 6 99 6 66666 6 55 99 2 3 88 11111 7 9 222 7 6 1 8 7 7 3 33 8 3 444 6 00000 8 77777 7 8 6 4444 4 11 22 0 5 8 55 7777 5 8888888 6 8 0000000000000000000 2 8888888888888888 8 8 1 9999999999999999999999999999999999 0 4 0 11 000 6 44 1111 8 6 8 444 6 0 5 6 88 5 88 88 5 0 1 666 555555 6 7 1 99 6 88 0 1111111111111111111111111111 3 4444 0 3 5 7777777 333333 22222 1
lowQualScore : .. ......... ............. ..... . . . . . .... ........ . ..... . ....... . .... . . . . . . ....... .......................................................... . ................. . .. ................ . . .. . . . ...... ... .. ... . . . ..................... ......... ... . ...... ..................................... .. . . . . . . . . . . . .. . . . ........ . . . . . . . . . . ... . ...... . . ............. . ..... .. . . ... . . . .... ... . ...... ... . .. . ..... . .. .. . . .. ..... . . ... . . . . . . . .. . . ... . ..... . ..... . . . .... . .. .. . . . .. .... . ....... . . ................... . ................ . . . .................................. . . . .. ... . .. .... . . . ... . . . . .. . .. .. . . . ... ...... . . . .. . .. . ............................ . .... . . . ....... ...... ..... .
lowQualScore : 00 888888888 5555555555555 55555 0 5 5 5 0 0000 00000000 5 00000 0 0000000 0 5555 2 0 5 0 7 7 8888888 7777777777777777777777777777777777777777777777777777777777 3 88888888888888888 5 55 8888888888888888 7 0 00 7 1 7 111111 000 00 666 4 1 9 999999999999999999999 111111111 000 3 222222 7777777777777777777777777777777777777 88 0 3 5 2 4 0 0 2 0 8 6 66 0 6 0 00000000 4 0 6 0 4 4 2 0 0 0 000 8 000000 0 0 0000000000000 0 22222 55 0 0 888 2 0 5 0000 000 3 888888 777 7 22 7 77777 7 88 88 5 2 00 00000 1 2 000 8 7 0 3 5 7 2 88 2 0 000 0 00000 0 00000 8 0 0 8888 6 00 88 6 6 0 88 0000 0 0000000 0 0 8888888888888888888 8 0000000000000000 0 0 4 8888888888888888888888888888888888 6 8 8 00 555 0 88 2222 0 0 0 000 0 5 0 2 33 7 33 33 0 8 0 333 888888 7 8 0 22 0 33 7 2222222222222222222222222222 3 2222 5 3 9 9999999 666666 77777 4
consensus : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA----GACCCGCAC---AAGG-CCCAGNGTCCTGANTCCATCCCTCCAATGGTTCCTGAAAN-AGGAAGAGTCGCAAAGGAGGC-ATGCTCCATNACCGAGGATCATCTGNTGAAGCANCACNCTCGGACAAGGTGT-GGTCCCGGATGACTGGAAACAGNCCCTTGTCACAC-CCAT-CTCC--AAGA-AAGGTGACCGTACAACCC-----------CTGCGA---A-CT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGCTGCGAGAC-ACTTCG----------AACGCATAGTA--CATAGCCAGGTG----ATGA-AC-ATC-TTG-AGCAGCATGGAATTCTTTCAGANNAAACAACATGGCTTTCA-G-AAA--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGGCAAATC--A-T-CGT-AC----AGGA-CCT--TGCTGC---AAGCCTGGATG------CTG-GAGAGCAGATTGATGCT-ACACTCCTAGA-------CTTTAGCAAGGCATTCGACAAGGTTCCTCACCAACGCCTAGCTCAGAAGTTGTC-CCACTACGGCGTCGGGGGCAC-CTTGCTAAACTGGATTAAGAGCTT-CTTGAGTAACCGGCACCA-GAGAGTCCT--------GAGTGACAACCACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGCTCAGTCCTGGG-CCCACTGCTATTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGNTCT-ACTCTTAT-CTA--C-GCAAAATCANGTCAGCGTCAGACTGCAATACCNTACAGGAAGACCTACAGAANTTAGAGGAGTGGGAAAATGAT---TGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCA-TTAGCCACTGTT-AAAA-GGGAAAGTATCTTGGAGTCACCCTATCGGACA-AGCTCTCTTGGANTGACCACGTGGATGTAACCA-AAAGGAANCCAACGCCAGCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAC---C-AACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGGC-CAATACT-CGAGTATGCCTC----ACATGT--C----TGGGATCCG-CATGCTGCC----GTA-----AACATAGACAAGCTAGAACGTG-------TC-CA-GCGTAGGGCGGCTAGGTT-----TTTT------GTTGT---GGCT--AC---AAAACCACAAGCAGTGCAAGCCAAATGA--TCCTTGACTTGGAATGANCTTCCTTGCAGCAGCNCAGAGAAGAAAGCAAGG----TTGTGCT-GATGTACAGGATCATGTACGCACTTGTGGACATACCAGCCGCA-GCA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACTCCGGCCCGCAATTCCCTTCTGCAGGACTGGTGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCGGGCACA--AACTAGAGCTTTC--GTCGCCGTTTTAACCTTAGGTTTTT----TAATCTGACCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-CAN-TGGAGG-AAGAAG
Reference ( gi|2 ) : TTGACACAGAGGGAGTTAGGTGCATAATTGCTAGAATAAC---TA----GACCTGCAC---A-GG-CCCAGGGTCCTGAATCCATCCCTTCAA-GATTCCTGAAATTA-----AGTCGCAAAGGAGGCCATACTCCATAACCGAGAATCATCTCTTGAAGCATC-CAATTGGACAAGATGTTGGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCCGAAAGAGAAGGTGACCGTA-AACCC----------GCTGCGA-CCA-CTGACAGGTCGCTGTC-CTCTGAGCCTCTGAATCTGCCGCGAGACCACTTTG----------AACGCATAGTA-ACATAGCCAGGTG----A----AC-ATAATTG-AGAAGCATGGAATTCTTTCAGAAAAAACAACATGGCTTTCA-G-AGA--CG---GAGGTCTTCTTGTGAAAAGTCAGTTAGCAAATC--ATT-CATAAC----AGGA-CTT--TCTTGC---AAGCCTGGGTG------CTG-G------GATTGATCCTGACACTGCTAAATCCATTACTTTGCCAAAGCACTTCACAAGGTTCCCCACCAACGCCTAGCTCAGAAGATGTC-CTACTACGTCATCAGGGGCAC-CTTGCTAAACTGGATTGGGAGCTT-CTTGAGTAACCGGCTCCA-GAGAGTCCT--------GATTGACAACTACTCATCAGAGCCAGCACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGG-CTCACTGCTCTTTCTTCTGTACATA---AACGATCTGCCGGACAGAATATGATTAATTGCCAGGCTCTTCGCAGATG--AGTCT-TCTCTTAT-CTA--C-GCAAAATCAAGTCAGCGTCAGACTGCAATATCATAGATGAAGATCTACAGAAGTTAGAGGAGTGGGAAAGTGAT---TGGCAGATGTCCTTCAACCCCTCTAAATGAGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTTATAAA-GGGAAAGTATCTTGGAGTCATCCTATTGTATA-AGCACCCTTGGAATGACCACCTGGATGTAACCACAAAGAAAGCCAACGCCAGTCT---CAGCTTTCTCTGG-----AGAAATCTAG-CAAGTCTAC---G-AACTCAGACC-AAATCCCAGTGCTACAA---AACACT--TGTCAGGT-CAATACT-CGATTATGCCTC----ACCTGT--C----TGGAATCCG-CATACTGCC----ATA-----AACATAGATAAGCT-------G-------TC-CA-GCGTAGGGCGGCTAGGTT-----T---------A-------GG----AC---AAAACCACAAGCAATGCAAGCCAAATGA--TCCTTGACTTGGAATGGCTTTCCTCACAGCAGTGCAGAGAAGAAAGCAAGG----TTGTGCT-GATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCTGCA-GCA---TATTTACACCCACTCTGCAGGATCACTCGTGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTATTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTGACTGCAAAGTCCCTCGGGACCTTC------A-GGCAGGGCTCTTAGGCACA--AACTAAAGCTTTT--GTCGCCGTTTC--CCTCCGGTATTC----AAATATG--CACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATTCTCC------GGAGA---GAACCCTGCACT-CATGTGGAAG-AAGAAG
gi|1 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAAC---CAAAAAGACCTGCACCAAA-GG-CC-AGGGTC-TGACTCCATCCCTCCAATG--TCCTAAAAG-AGGAAGAGTCGCAA-GGAGG--A-GCTCCATTACTGAGGAT----TGATGAAGCAACACTCTCGGATAAGGTAT-GGTCACAGATGAC--GAAGCAGGCCCTTCTCACAC-CCAT-CTTC--AAGA-ACGGTAACCGTA-AAACC----------CCTGCAA---A-AT-ACAGACC--TATCTCTCTG-TCCTC--AGTCTGCTGCAAGAC-ACTT-G----------AA-ACATAGTA--CGTAGCCAGGTG----ATGAAAC-TTC-TTG-TGCAGCACCAAATTCTTTCA-AACAATCAACAAAGCTT-CACG-AAC--CG---AAGGTCTT-TTG---AAAGTCAGTTGGCAA-----------TAAC----CGTG-CCTGATCTTGCTCCAAGCCTGGATG------TTG-GAGAGCAGATTGATGCT-ATACTTCTAGA-------CTTTAGCAAGGCATTCGACAAGGTTCCCCACCAACGCCTAGTTCAGAGGTTATC-CCACTAGGGCATCATGGGCAC-CTTGCTAAACTGGTTTAAGAGCTT-CTTGAGTGACCGGCACCA-GAGAGTCCT--------GATTGAAAACCACTCATCAGAGCCAGCACCAGTGACTTCTGGGGTGCCACAGGGCTCAGTCCTGGGCCCCACCTCTCTTTCTTCTGTACATA---AACGATCTGCTGGAGAGAGCAAAATCAACTACCAGGCTCTTCGCAGACGACAGCCT-AC---TATACT-----GCTAAATCAAGTCAGCGTCAGACTGCAATACCTTACGGGAAGACCTACAGAAGTTAGAGGAGTGGGGTAATGAT---TGGCAGATGTCCTCTAACCCCTCTAAATGCGAGGTAT-----TT---AAGAA-GTACCCTGAAGCGC-AATCCGATC--TGCC-AAT-----TAC-ACCCTGCATGGG--CACCATTTAGCCACTGTTAAAAA-GAGAAAGTATCTTAGAGTCACCCTATCGGACA-AGCTCTCTAGGACTGACCACGTG--------------GAAAGTCAACACCAGCCTGAGCAGCCTTCTCCGA-----AGAAATCTAG-CAATTCTACCATGCAACGCAGACT-AAATCCCAGTGCT-TAA--------T--TGTCAGAC-CAATCCT-CAAGTATGCCTC----ATCTGT--CTGCATGGGATCCG-CATACTTCC----GTC-----AATATAGACAAGCT-------AGAACGTTTC-TA-GCGTAGGGCGGCTAGGTT-----T---------GTTGTC--GGGACTAC---AAAACTACAAGTACTACAAGCCAAATGA--TCCTTGACCTGGAATGACCTTCCTTACAGCAGCACAGAGAAGAAAGCAAGGAACCTTGTACT-GATGTACAGGATCATGTACGCACTTGTGGACATACCAGTCGCATGCAGTTTATCTACA-TCATTCTGCAGCATCACTCG-GGACACTCACTCCGATTCGCAATTCCCTTCTGCAGGACTGATGTATATACCGTTATTCCCTCTTCCACTCCGGTATTCGACTA--TGGAACCTGAGCTTTCAGAGCATCTTGTCACTGCAGAGTCCTTCGAGACCTTC------A-AG
gi|5 : tgggccacaacagccatgtcaaaacatcatcgacaatgggagcaacccctttgaagaaactttacagctacatgtacatcaaccgcaaaagatgtgacagtagtggtgatggacactatatgaaaaaggatgccatcggcattagtgacccaaaacttaaaacattccattatagattaacagtttctcaagtgttttttactaaagaagattttcaagaagtccaacaattgacattaaaccttttccagaaatgggaaaccccccaaaaaccctcccatggTTGACACCAAGGGAAT-AGG--CA-AATTGCTAGAAAAAC---TA----GACCTGCAC---A-GGGCCCAGGGTCCTGAATCCATCCCTTCAA-AGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-AT-CTCCATAACCGAGAATCATCT-TTGAAGCATC-CA-TTGGACAAGATGT-GGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCC--AAGA-AAGGTGACCGTACAACCC-----------CTGCGA---A-CT-ACAGGCC--TGTCTCTCTGA-CCTC--GATCTGCCGCGAGAC-ACTT-G----------AACGCATAGTA--CATAGCCAGGTG----A----AC-ATA-TTG-AGAAGCATGGAATTCTTTCAGAAAAAACAACATGGC-TTCA-GAAGA--CG---GAGG---TCTTGTG-AAAGTCAGTTAGC-AATC--A-T-CAT-AC----AGGATCTT--TC-TGC---AAGCCTGGGTG------Ca
gi|12 : ccacaacaactactagtatgtcaaagacataccggtaattgacaatgggagcaaccccaaaaactttacgttcccatcttatcaagaagccaagagtactctccgacagtagtggtgtgatactactgaaaaggatgggaacgctgctacagtgtccaaaactcaaaacattctatataaatgaacgaataaaaattactgccggtttggtcaactagctagaacagcggttgtcagagggttcaaacacacgaccgctaacctgcaaaaaattggtattccttagagtatgaatcacacttccatcTTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAA-AACCTATA----GACTCGCAC---AAGG-CCCAGTGTCCTGA
gi|13 : gtaaatgggcccacagcatctatgtcaaagacataattgacaatgggagcaaccccaaagactttacttccacatcaaaagcaaaatgtgttacagtagtggtgtgacactactgaaaaaggatggcatcgcttacagtgacacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgTTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAA--ACCTATA----GACTCGCAC---AAGG-CCCAGTGTCCTGAc
gi|11 : atgggcccacagcatctatgtcaaagacataattgacaagagggagcaaccccaaagactttacttccacatcaaaagcaaattgtttacagtagtggtgtgacactactgaaaaaggatggcaatcgcttatcagtgacaacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgGGACAAGGTGT-GGTCCCAAATGACTGGAAGCAGGCCCTTGCCACAC-CCAT-CTTCAAAA---AAGGTGACCGTACAACCCGGGGGGGGGGGCTGCAAGCTAGCT-ATAGGC--CTATCTCACTGA-CCTC--AATCTGCTGCAAGACC---TCGGGTGCAAGACAAAACATAGTACACATAGCCAAGCGATGAA----AC-AT-CTTG-AGCAGCATGGAATACTTTCAG-ACAAACAACATGGCTTCAA-G-AAA--CG---AA---TTTCTTGTG-AAAGTCAATTAAC-AATC--A-A-CGT-GC----AGGA-TCT--TGCTGC---AAGCCTGGATG------ct
gi|14 : CAAGGTGT-GGTC--AGATGAATTGGCATAGGAGCTTGTCACAGATCATACTTC-AACGAAGAGGTGACCGCA--------------------CAA-CTT-CTGCCAAGCC--TATCTCGCTAA---CCTAAATATGCTACAAGAC-ACTT-G----------AACACATAGTA--CATAGCCAGGTG----ATGA-ACCAT--TTGGAGCAACATGAACTACATTCAGACCAA-CAGCATGG-TTTCA-GGAAA--TG---AAGACCTT---GTGAAA-GTCAGTTAGC-AATC--A-T-CGT-GC----AGGA-TCT--TGCTGC---AAGCCTG
gi|4 : GTCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AAGA-AAGGTGACTGTACAACCC-----------CTGCGA---A-CT-ACAGGCC--TATCTCTCTGA-CCTC--AATTTGCTGTGCGGC-A-TTTG----------AACGCATATTA--CATAGCCAGGTG----ATGAAAC-ATC-TTG-AGCAGCATGGAATTCTTTCAGACAAA-CAACATGGCTT-CA-G-AAAA-CG---GAGGTCTT---ATGAAA-GTCAGTTGGCAA-TC--ACTGCG---C----AGGA-TCT--TGCTGC---AAACCTTGGTA------CTG-GAGAGCAGATTGATGCT-ACACTCCTAGA-------CTTTAGCAAGACATTTGACAAGGTTCCTCACCAACGCCTAGCTCAGAAGATGTC-CCACTACGGCGTCAGGGGCAC-CTTGCTAAACTGGATTAAGAGCTT-CTTGAGTAACCGGCACCA-GAGAGTCCT--------GAGTGACAACCACTCATCAGGGCCAACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGG-CCCACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCT-ACTCTTAT-CTA--C-GCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGAAGACCTACAGAATTTAGAGAAGTGGGAACATGAT---TGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTT-TAAA------AGTACCTCGGAGTCACCCTATCAGACA-ATCACTCTTGGATTGACCACGTGGATGTAACCAAAAAGGAATCCAACGCCATCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAC---C-AACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGGC-CAATACT-CGAGTATGCCTC----ACATGT--C----TGGGGTCCG-CA-------------------AACATAGACAAGCTAGAACGTG-------TC-AA-GCGTAGGGCGACTAGGTT-----TTTTTATCGTG-------GGCT--AC---AAAATCACAGGCAGTGCAAGCCAAATGA--TCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGCT-GATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACTaat
gi|3 : acaaggcccagtGTCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AAGA-AAGGTGACTGTACAACCC-----------CTGCGA---A-CT-ACAGGCC--TATCTCTCTGACCC----AATTTGCTGTGCGGC-A-TTTG----------AACGCATATTA--CATAGCCAGGTG----ATGA-AC-ATC-TTG-AGCAGCATGGAATTCTTTCAGACAAA-CAACATGGCTT-CA-G-AAAAACG---GAGGTCTT---ATGAAA-GTCAGTTGGCAA-TC--ACTGCG---C----AGGA-TCT--TGCTGC---AAACTTGG-TA------CTG-GAGAGCAGATTGATGCT-ACACTCCTAGA-------CTTTAGCAAGACATTTGACAAGGTTCCTCACCAACGCCTAGCTCAGAAATTGTC-CCACTACGGCGTCAGGGGCAC-CTTGCTAAACTGGATTAAGAGCTT-CTTGAGTAACCGGCACCAAGAGAGTCCT--------GAGTGACAAC-ACTCATCAGGGC-AACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGG-CCCACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCT-ACTCTTAT-CTAACC-GCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGA-GACCTACAGAATTTAGAGAAGTGGGAAA-TGAT---TGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAAATTACTCAGAAGCG--AATCCAATCATTGCC-AAT-----TACCACCTTGCATGGA--TACCAGTTAGTCACTGTTTTAAA------AGTA-CTCGGAGTCACCCTATCAGAAACATCACTCTTGGATTGACCACGTGGATGTAACCA-AAAGGAATCCAACGCCATCCT---CAGCTTCTTCCGG-----AGAAATCTAG-CAAGTCTAC---C-AACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGGC-CAATACT-CGAGTATGCCTC----ACATGT--C----TGGGGTCCG-CA-------------------AACATAGACAAGCTAGAACGTG-------TCGCAAGCGTAGGGCGACTAGGTT-----TTTTATCGT-G-------GGCT--AC---AAAATCACAGGCAGTGCAAGCCAAATGAAATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGCTTGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACTttg
gi|9 : caaggcccagtAACAGCATGGCTTTCA-G-AAA--CAACCGAA----TCGTGTGAGAG--C------CAAATCTGATT-CCTGACGTTCACGA-C-----CTTGCCAAGAGTATGGATGAACGAACAGCA------AACTGA-CCTGATACTCCTGA---------TTTTTCAAAGGCCTTTATAAGGTTCCTCACAAGCGCCTttgt
gi|6 : cacctcagttcacatgcaaaatctagaacaacatcgtatgtagcaggcaattgcgaccatctagacaacaggacctcacgaattgcACTTTTCTAAAGCATTTGACAAGGTCCAGCACCAGAGACTTCTTCACAAG-TGCCACCACTATCTGATCGGGGAAACACTCTCCAG--TAGACTGCCAGGTTCCTTCAACAACACAC-CCA-GGAAGACGTATGCGAGGGAGTGA-----AGTTAGGAAGGTCA---CCAGTAACATCAGGTGTACCCCAGGGAACAGTCCTCAG-GTCACTCCTATTCCTTGTGTACATC---AATGACTTGCCTGAtctttataatcaaaataacctatggtattcggaacagctctgcattcatgataaggacttttcttgaggccgacacagcagttttattggagaggagtgaagtccaacacagtttcctgtccactccggcgtcccacaaggagcgtcttagacctctgctgttcctctattattaacgacctacctgaggcagta
gi|8 : taaacacatcctgcacactaccatcatcactcacctggaggacttgaacattctgtccgataaccaacatggattccgaaagtaggggtcatgtgaaaatcaactggtcatctgacatcactagaaggaactgttaggcagcttaacacagtagaccaaatcaaatattctgctatatagAAGGCATTCGACAAAGTTCCCCACCAACACCTAGCTCACAAGTCGTC-CCACAACGGCATAGGGGGCAC-CTTGCT-----GGATTAAGAACTT-CTTGAGTGACTGGCACCA-GAGAACTCT--------GATAGACAACCACTCAACAGAGCCAGCACCAGTGATTTCTGGAGTGTCACATGGCTCAGTTCTGGG-CCCACTGCTCGTTCCTCTGTACATAATTAACGATATGCCGGATAGAGCAAAATCAACTACCAGGCTCTTTGCAGACAACAGTCTAT------T-CTA--CTGCAAAATCAA------GTCAGACTGTAATACCTTACAGGAAGACCTACGCAAGTTAGAGGAGTGGAAACATGAT---TGGCAGATGTCCTTCAACATCTCTTAATGTGAGGTA------TTTAAAAGAG-TTACTCGGAAGCGG-AATACAATCATTGCC-AAT-----TAC-ACCCTGC-------TA------------------AAA-GGGAAAGTATCTTGGAGTCTCCCTATCGGACA-AGCTCTCTTGGACTGAatttgtagcttcaactaccagactgtgaaatttcagatcaccagctagaggactctaggatcctacaaaatgaactggacaggatagctggctcatgagcttcaacactgacaaatgcgagatgctgaggatcaccaataagcggaaaaccacacatctccaaatactagtacaccgttcatggagttcccctagcctcgttgaaaacagcgaagtacttgggacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|6 : attgatacaatacatatttctagactttagcaattttaaGGACAG-GATAGCTGGCTCATGAGCTTCAACACTGACAAATGCGAGATG------CT---GAGGA-TCACCAATAAGCGGAAAACCACACATCTCCAAATACTAGTAC-ACCGTTCATGGAGTTCCC--CTAGCCTC-GTTGAAAACAGCGAAGTA-CTTGG
gi|15 : taaacacatcctgcacactaccatcatcactcacctggaggacttgaacattctgtccgataaccaacatggattccgaaagtaggggtcatgtgaaaatcaactggtcatctgacatcactagaaggaactgttaggcagcttaacacagtagaccaaatcaaatattctgctatatagacttttctaaagcatttgacaaggtccagcaccagagacttcttcacaagtgccaccactatctgatcggggaaacactctccagtagactgccaggttccttcaacaacacacccaggaagacgtatgcgagggagtgaagttaggaaggtcaccagtaacatcaggtgtaccccagggaacagtcctcaggtcactcctattccttgtgtacatcaatgacttgcctgaatttgtagcttcaactaccagactgtgaaatttcagatcaccagctagaggactctaggatcctacaaaatgaactTTAACCCCTCTATATGCGAGGTACATGTATT---AAGAA-TAACTCAGAAGTGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGGG-CACCACTTAGCCACTGTTAAAAA-GGGAAAGTATCTTGGAGTCATCCTATCGGACA-AACTCTCTTGGAATGACCACGTGGATGTAACCACCAAAAAgacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|10 : AAATATTTTGGTGTCA-------G-ACA-AGCTCACGTGGAACGAGCATTTGGATGCAACTATAATGGAGATCAACAACAGTCT---AAGCTTTCTACGGATCAAAGAATTCAAGATAGGTCACC---G-ATCCTA-ACCGAAACACCAGTACGTCAGGACAACATTAGCGT-AGGTCCCAT-CTACG--TAGGTCCCAACTACATGTACC----TAGGATCCC-TATGCAGCCAACAATATTGACAACTTAGA-AGGC--------G-------TC-CA-ACAAAGAATGCCAGGGTTTGTTGT---------A-------GG-------------CGACTAGCAATTTGAGTC-----A--TTCGTGACTTATAATG
gi|7 : gAAAAAACCCAACGCCAGCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAT---C-AACCCAGATC-AAATCCCAGTGCTACAA---AACACT--TGTCA------ATACT-CGAGTATGCCTC----AACTGT--C----TGGGATTCGTNNNNNTGCC----GTA-----AACATAGACAAGCTAGAATGTG-------TC-CA-ACGTAGGGTGGCTAGGTT-----T---------GTTGTTGGGG----ACTACAAACCCACAAGAAGTGCAAGCCAAATGA--TCCCTGACCTAGAAGGGCCTTCCTTACAGCAGGGTAGAGAAGAATGCAAGG----TTGTGCT-GATGTACAGGATCATGTACACACTTGTGGACATACCAGTCACA-GCA---TACCTACACCCACTCTGCAGCATCACTCGTGGACACTCACTCCGGCCCGCAATTCCCTTCTGCAGGACTGGTGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTTGACTA--TGGGACC--AGCTTTCAGAGCACCTTGTCACTACAAAGTCCCTCGAGACCTTCCATTTTA-TGCAGGGCTTTAAGGCACATTTACTAGAGCTTTC--GTCGCCGTTTTAACCT--GTTATTT----TAATCTG--CACT-TTCA----CCGCAATTCACAGTCACTGTAAATAT-AGCACTAAGTGCAACAATGCTCC------AGAGA---GAGCCCTGCACT-CATTTGGAAG-GAGAAa
gi|22 : ccTGCT-GATGTACAGGATCATGTACGCACTTGTGAACATACCAGCCGCA-GCA---T
gi|20 : tgtaatgtttaaATAC--CGTTATTCCTTTATCCCTTCCGGTAATCGCCTAGATGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAATCCCTCGAGACCTTCA-----A-GGCAGGGCTATCGGACACA--AACTAGAGCTTTC--GTCGCCGTTTT--C
gi|17 : ACTGCAA-----CT---GAACTCA------A-GCCAGGGCTCTCA--CACA--AACTAGAGCTTTTTCGTCGCTGTTTT--AACTAGGTTTT--------TTTGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-AAC-TGGAGGAAAGAAGacctat
gi|16 : CTGCAAAGACCCT--------TA------A-GACAGGGCTCTCAAGCACA--AACTAGAGCTTTT--GTCGCTGTTTTAACCTAGGTTTTTT----TTACCTG--CACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAATGCGACAATACTCCAGAGAGAGAGA---GAGCCCTGCACT-CAACTGGAGG-GAGAAG
gi|19 : GGACCTTC------AAGGCATGGCTCTCGGGCACA--AACTAGAGCTTTG--GTCACTGTTTTGACCT---GT-TTCTTTTAAGTCTT--CACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCAAGAAGTGTGACAATGCTCC------AGAGA---GAGCCCT-C--------TGGAAG-AAGa
gi|18 : CAGGGCTCTCAGACACA--AACTAGAGCTTTTTCGTCGCTGTTTT--AACTAGGTTTT--------TTTGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-AAC-TGGAGGAAAGAAG
gi|21 : gcCC-TTCGAGACCTTCAAG--ACAGTCATGGTAAATAA-AGCACTAAGTGCGACAATGCTTC------AGAGA---G--CCCTGCAAT-CAATTGGAGG-AACAAGa
gi|23 : gtTAAATGTGACAATGCTCC------AGAGA---G--CCCTGCACTCCAT-TGGAAG-ATGAAGaaa
Alignments
lowQualScore : 11 111 11 333 55555555 33333 11 2 1 222 33333333333 11111111 333333333333 11 1 11 222 1 1 111111 111111111 111111 1 1111111 22222222 1111111 111111 222222222 22222222 11111 111 2222 111 1111 222222 111 11111 1 2 111 11111 111 111 11111 1111 111 1111 1111 222222222222 111 11 11 1111 111 1 11 11 11 22222222 11 2222 4444444444 1 1111 1 2222222 111 111111 1
lowQualScore : 8 11 8 66 666 8 11 3 1 1 0 111 66666666 7 00000 1 0 6 66 1 3 44 2 000 5 4 0 1 1 5 5 77 5 5 5 0 22222222222 66666666 5 77 5 66 5 0 5 888888888888 5 66 5 0 888 5 8 4 4 4 99 4 2 0 4 4 4 00 777 33 333 4 2 4 5 66 777777 66 777777777 3 66 1 66 3 666666 3 77 1 77 1 8888888 11 00000000 22 0 8888888 1 22 5 5 1 2 77 77 5 0 666666 0 77 0 77 5 888888888 3 00000000 0 22222 88 8 0 4 5 44 000 1 3333 111 0 7777 1 1 1 0 1 6 33 222222 000 5 66 5 44444 5 1 8 0 1 222 66666 5 1 5 2 1 111 33 1 111 66666 6 4444 6 3 111 99 99 6 4444 3 99 4444 666666666666 1 000 6 3 2 66 33 99 1 1 7777 6 6 111 1 0 0 33 0 33 33 1 22222222 1 77 55 3 3333 6 99 2222222222 1 2222 1 2222222 777 999999 0
lowQualScore : . .. . .. ... . .. . . . . ... ........ . ..... . . . .. . . .. . ... . . . . . . . .. . . . . ........... ........ . .. . .. . . . ............ . .. . . ... . . . . . .. . . . . . . .. ... .. ... . . . . .. ...... .. ......... . .. . .. . ...... . .. . .. . ....... .. ........ .. . ....... . .. . . . . .. .. . . ...... . .. . .. . ......... . ........ . ..... .. . . . . .. ... . .... ... . .... . . . . . . .. ...... ... . .. . ..... . . . . . ... ..... . . . . . ... .. . ... ..... . .... . . ... .. .. . .... . .. .... ............ . ... . . . .. .. .. . . .... . . ... . . . .. . .. .. . ........ . .. .. . .... . .. .......... . .... . ....... ... ...... .
lowQualScore : 0 00 0 44 444 0 00 8 0 0 7 000 00000000 3 33333 0 7 7 00 0 7 77 0 000 7 3 7 4 0 7 7 99 7 7 7 7 99999999999 11111111 7 99 0 99 0 9 0 222222222222 0 99 0 9 888 0 9 4 4 4 33 4 0 7 4 4 4 66 888 66 888 6 8 6 4 11 222222 77 888888888 4 11 4 99 5 444444 0 99 4 99 7 6666666 33 77777777 11 9 6666666 7 00 7 7 4 7 99 99 0 7 444444 1 99 1 99 7 666666666 9 77777777 7 99999 77 9 3 0 7 99 000 0 0000 222 8 0000 0 0 4 8 0 7 22 111111 000 7 44 7 33333 7 4 6 4 4 000 77777 1 7 7 1 0 666 55 0 777 77777 7 2222 7 5 777 22 22 7 2222 0 22 2222 000000000000 0 222 7 3 5 33 33 22 0 0 0000 7 7 777 2 7 7 88 2 88 88 0 33333333 4 99 77 6 1111 7 22 0000000000 4 1111 4 9999999 555 444444 0
consensus : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAA-GGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATCATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-C-ATC-TTGAGCAGCATGGA-ATTCTTTCAGANCA-AACAACATGGCTTTCA-G-AA-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGGCAAATC--AT------CGTG-CA---------GGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGG-CCCACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGGTCTACTCTTATCTA--CTGCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA-TACCAGTTAGCCACTGTT-A-AAA--GGGAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAAGGAANCCAACGCCAGCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAC----CAACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCAATACTCGA-GTATGCCTC----ACNTGT--C----TGGGATCCG-CATACTGCCGTAAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTNTTGTCGT-GG-CTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCTTAGGTT-T--TTTA-A-TCTG-CCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-CTGGAGG-AAGAAG
Reference ( family-996 ) : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGNGTCCTGANTCCATCCCTCCAATGGTTCCTGAAAN-AGGAAGAGTCGCAAAGGAGGC-ATGCTCCATNACCGAGGATCATCTGNTGAAGCANCACNCTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGNCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTTCG----------AACG-CATAGT--A-CATAGCCAGGTGAT---G-AA-C-ATC-TTGAGCAGCATGGA-ATTCTTTCAGANNA-AACAACATGGCTTTCA-G-AA-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGGCAAATC--AT------CGTA-CA---------GGACCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTCGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCGTCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGCTCAGTCCTGGG-CCCACTGCTATTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGNTCTACTCTTATCTA--C-GCAAAATCANGTCAGCGTCAGACTGCAATACCNTACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA-TACCA-TTAGCCACTGTT-A-AAA--GGGAAAGTATCTTGGAGTCACCCTATCGGACA-AGCTCTCTTGGANTGACCACGTGGATGTAACC-A-AAAGGAANCCAACGCCAGCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAC----CAACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCAATACTCGA-GTATGCCTC----ACATGT--C----TGGGATCCG-CATGCTGCCGTAAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTTTTGTTGT-GG-CTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGANCTTCCTTGCAGCAGCNCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGACATACCAGCCGCA-GCA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACTCCGGCCCGCAATTCCCTTCTGCAGGACTGGTGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCGGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCTTAGGTT-T--TTTA-A-TCTGACCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-NTGGAGG-AAGAAG
gi|1 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCAAAAAGACCTGCACCAAAGGCC-AGGGTC-TGACTCCATCCCTCCAATG--TCCTAAAAG-AGGAAGAGTCGCAA-GGAGG--A-GCTCCATTACTGAGGAT----TGATGAAGCAACACTCTCGGATAAGGT---AT-GGTCACAGATGAC--GAAGCAGGCCCTTCTCACAC-CCAT-CTTC--AA-GA-A-CGGTAACCGTAAAACCC-----------CTGCA----A--AAT-ACAGACC--TATCTCTCTGT-CCTC--AGTCTGC-TGCAAGAC-ACTT-G----------AA-A-CATAGT--A-CGTAGCCAGGTGAT---G-AAAC-TTC-TTGTGCAGCACCAA-ATTCTTTCA-AACA-ATCAACAAAGCTT-CACG-AA-C--CG---AAGGTCTT-TTG---AAAGTCAGTTGGCAA-TA--AC------CGTG-CC---------TGATCTTGCT--CCAAGCCTGGATG--TTGGAGAGCAGATTGA------TGC--T-ATAC--TTCTAGA-------CTTTAGCAA--------GGCATTCGACAAGGTTCCCCACCAACGCC-------TAGTTCAGAGGTTATC-CCACTA-GGGCATCATGGG--CACCTTGC--TAAACTGGTT------TAAGAGC--TTCTTGAGTGACCGGCAC--C-A---------GAGAGTCCT--------GATTGA----AAAC-CACTCATCAGAGCCAGCACCAGTGACTTCTGGGGTGCCACAGGGCTCAGTCCTGGGCCCCACCTCTCTTTCTTCTGTACATA---AACGATCTGCTGGAGAGAGCAAAATCAACTACCAGGCTCTTCGCAGACGACAGCCTAC---TA--TA--CTGCTAAATCAAGTCAGCGTCAGACTGCAATACCTTACGGGAAGACCTACAGAAGTTAGAGGAGTGGG-GTAATGATTGGCAGATGTCCTCTAACCCCTCTAAATGCGAGGTAT-----TT---AAGAA-GTACCCTGAAGCGC-AATCCGATC--TGCC-AAT-----TAC-ACCCTGCATGGG-CACCATTTAGCCACTGTTAA-AAA--GAGAAAGTATCTTAGAGTCACCCTATCGGACA-AGCTCTCTAGGACTGACCACGTGGA---------------AAGTCAACACCAGCCTGAGCAGCCTTCTCCGA-----AGAAATCTAG-CAATTCTACCATGCAACGCAGACT-AAATCCCAGTGCT-TAA--------T--TGTCAGA--CCAATCCTCAA-GTATGCCTC----ATCTGT--CTGCATGGGATCCG-CATACTTCCGTCAATATAGACAAGCTAGAACGTTTC-T-AGCGTAGGGCGGCTAGG-TTTGTTGTCGG-GA-CTACAAAACTACAAGTACTACAAGCCAAATG--ATCCTTGACCTGGAATGACCTTCCTTACAGCAGCACAGAGAAGAAAGCAAGGAACCTTGTAC-TGATGTACAGGATCATGTACGCACTTGTGGACATACCAGTCGCATGCAGTTTATCTACAT-CATTCTGCAGCATCACTCG-GGACACTCACTCCGATTCGCAATTCCCTTCTGCAGGACTGATGTATATACCGTTATTCCCTCTTCCACTCCGGTATTCGACTA--TGGAACCTGAGCTTTCAGAGCATCTTGTCACTGCAGAGTCCTTCGAGACCTTC------A-AG
gi|10 : tgggccacaacagccatgtcaaaacatcatcgacaatgggagcaacccctttgaagaaactttacagctacatgtacatcaaccgcaaaagatgtgacagtagtggtgatggacactatatgaaaaaggatgccatcggcattagtgacccaaaacttaaaacattccattatagattaacagtttctcaagtgttttttactaaagaagattttcaagaagtccaacaattgacattaaaccttttccagaaatgggaaaccccccaaaaaccctcccatggAAATATTTTGGTGTCA--------GACA-AGCTCACGTGGAACGAGCATTTGGATGCAACT-ATAATGGAGATCAACAACAGTCT---AAGCTTTCTACGGATCAAAGAATTCAAGATAGGTC-AC----CGATCCTAACCGAAACACCAGTACGTCAGGACAACATTAGCGT-AGGTCCCA----TCTACGTAGGTCCCAACTACATGTACC----TAGGATCCC-TATGCAGCCAACAATATTGACAACTTAGAAGGCGTC-C-AACAAAGAAT-GCCAGG---GTTTGTTGT-AG--------GCGACTAGCAATTTGAGTC-------ATTCGTGACTTATAATGAa
gi|11 : gGGACAAGGT---GT-GGTCCCAAATGACTGGAAGCAGGCCCTTGCCACAC-CCAT-CTTC--AA-AA-A-AGGTGACCGTACAACCCGGGGGGGGGGGCTGCAAGCTA--GCT-ATAGGCC--TATCTCACTGA-CCTC--AATCTGC-TGCAAG---ACCTCGGGTGCAAGACAAAA-CATAGTACA-CATAGCCAAGCGAT---GAAA-C-ATC-TTGAGCAGCATGGA-ATACTTTCAGA-CA-AACAACATGGCTTCAA-G-AA-A--CG---AA---TTTCTTGTG-AAAGTCAATTAAC-AATC--AA------CGTG-CA---------GGATCTTGCT--GCAAGCCTGGATG--
gi|12 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAA-CCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGA
gi|13 : gtaaatgggcccacagcatctatgtcaaagacataattgacaatgggagcaaccccaaagactttacttccacatcaaaagcaaaatgtgttacagtagtggtgtgacactactgaaaaaggatggcatcgcttacagtgacacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgTTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAA--CCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGACTc
gi|14 : atgggcccacagcatctatgtcaaagacataattgacaagagggagcaaccccaaagactttacttccacatcaaaagcaaattgtttacagtagtggtgtgacactactgaaaaaggatggcaatcgcttatcagtgacaacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgCAAGGT---GT-GGTC--AGATGAATTGGCATAGGAGCTTGTCACAGATCATACTTC--AACGA-AGAGGTGACCGCACAACTT-----------CTGC-------------CAAGCC--TATCTCGCTAA-CCTA--AATATGC-TACAAGAC-ACTT-G----------AACA-CATAGT--A-CATAGCCAGGTGAT---G-AA-CCATT-TGGAGCAACATGAA-CTACATTCAGACCA-A-CAGCATGG-TTTCA-GGAA-A--TG---AAGACCTT---GTGAAA-GTCAGTTAGCAA-TC--AT------CGTG-CA---------GGATCTTGCT--GCAAGCCTGAAT
gi|15 : TTAACCCCTCTATATGCGAGGTACATGTATT---AAGAA-TAACTCAGAAGTGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGGGCACCACTTAGCCACTGTT-A-AAAA-GGGAAAGTATCTTGGAGTCATCCTATCGGACA-AACTCTCTTGGAATGACCACGTGGATGTAACC-A-
gi|16 : CTGCAAAGACCCTTAAGAC---------------AGGGCTCTCAAGCACA--AACTAGAGCTTT--TGTCGCTGTTTTAACCT-AGGTT-T--TTTTTA-CCTG--CACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAATGCGACAATACTCCAGAGAGAGAGA---GAGCCCTGCACT-CAA-CTGGAGG-GAGAAGccaaaaa
gi|17 : ACTGCAA-----CT---GAACTCA------A-GCCAGGGCTCTCA--CACA--AACTAGAGCTTTTTCGTCGCTGTTTTAAC--TAGGTT-T--TTT------TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-CTGGAGGAAAGAAGa
gi|18 : CAGGGCTCTCAGACACA--AACTAGAGCTTTTTCGTCGCTGTTTTAAC--TAGGTT-T--TTT------TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-CTGGAGGAAAGAAG
gi|19 : gcGACCTTC------AAGGCATGGCTCTCGGGCACA--AACTAGAGCTTT--GGTCACTGTTTTGACCT---GTT-TCTTTTA-AGTCT--TCACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCAAGAAGTGTGACAATGCTCC------AGAGA---GAGCCCT----------CTGGAAG-AAGa
gi|2 : gTTGACACAGAGGGAGTTAGGTGCATAATTGCTAGAATAAC---TA-GACCTGCAC--A-GGCCCAGGGTCCTGAATCCATCCCTTCAA-GATTCCTGAAATTA-----AGTCGCAAAGGAGGCCATACTCCATAACCGAGAATCATCTCTTGAAGCATC-CAATTGGACAAGAT---GTTGGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCCGAAA-GAGA-AGGTGACCGTA-AACCCG----------CTGCG----ACCACTGACAGGTCGCTGTC-CTCTGAGCCTCTGAATCTGC-CGCGAGACCACTTTG----------AACG-CATAGT--AACATAGCCAGGTGA-------A-C-ATAATTGAGAAGCATGGA-ATTCTTTCAGAAAA-AACAACATGGCTTTCA-G-AG-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTAGCAAATC--ATT-----CATAACA---------GGACTTTCTT--GCAAGCCTGGGTG--CTGG------GATTGA------TCC--TGACAC--TGCTAAATCCATTACTTTGCCAA--------AGCACTTCACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGATGTC-CTACTA-CGTCATCAGGGG--CACCTTGC--TAAACTGGAT------TGGGAGC--TTCTTGAGTAACCGGCTC--C-A---------GAGAGTCCT--------GATTGA----CAAC-TACTCATCAGAGCCAGCACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGG-CTCACTGCTCTTTCTTCTGTACATA---AACGATCTGCCGGACAGAATATGATTAATTGCCAGGCTCTTCGCAGATGA--GTCTTCTCTTATCTA--C-GCAAAATCAAGTCAGCGTCAGACTGCAATATCATAGATGAAGATCTACAGAAGTTAGAGGAGTGGG-AAAGTGATTGGCAGATGTCCTTCAACCCCTCTAAATGAGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA-TACCAGTTAGTCACTGTT-ATAAA--GGGAAAGTATCTTGGAGTCATCCTATTGTATA-AGCACCCTTGGAATGACCACCTGGATGTAACC-ACAAAGAAAGCCAACGCCAGTCT---CAGCTTTCTCTGG-----AGAAATCTAG-CAAGTCTAC----GAACTCAGACC-AAATCCCAGTGCTACAA---AACACT--TGTCAGG--TCAATACTCGA-TTATGCCTC----ACCTGT--C----TGGAATCCG-CATACTGCCATAAACATAGATAAGCT-------GTC-C-AGCGTAGGGCGGCTAGG-TTTA--------GG---ACAAAACCACAAGCAATGCAAGCCAAATG--ATCCTTGACTTGGAATGGCTTTCCTCACAGCAGTGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCTGCA-GCA---TATTTACACCCACTCTGCAGGATCACTCGTGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTATTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTGACTGCAAAGTCCCTCGGGACCTTC------A-GGCAGGGCTCTTAGGCACA--AACTAAAGCTTT--TGTCGCCGTTTC--CCTCCGGTA-T--TCAA-A-TATG--CACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATTCTCC------GGAGA---GAACCCTGCACT-C-ATGTGGAAG-AAGAAG
gi|20 : ATAC--CGTTATTCCTTTATCCCTTCCGGTAATCGCCTAGATGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAATCCCTCGAGACCTTCA-----A-GGCAGGGCTATCGGACACA--AACTAGAGCTTT--CGTCGCCGTTTTCACCT
gi|21 : CC-TTCGAGACCTTCAAGACA--GTCATGGTAAATAA-AGCACTAAGTGCGACAATGCTTC--------AGA---GAGCCCTGCAAT-CAA-TTGGAGG-AACAAGat
gi|22 : gtTGC-TGATGTACAGGATCATGTACGCACTTGTGAACATACCAGCCGCA-GCA---Taaa
gi|23 : tgtaatgtttaaTAAATGTGACAATGCTCC--------AGA---GAGCCCTGCACTCC-A-TTGGAAG-ATGAAG
gi|3 : CAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CC-C--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AA-C-ATC-TTGAGCAGCATGGA-ATTCTTTCAGAC-A-AACAACATGGCTT-CA-G-AA-AAACG---GAGGTCTT---ATGAAA-GTCAGTTGGCAA-TC--AC------TGCG-CA---------GGATCTTGCT--GCAAACTTGG-TA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAATTGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-AA--------GAGAGTCCT--------GAGTGA----CAAC--ACTCATCAGGGC-AACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGG-CCCACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCTACTCTTATCTAACC-GCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGA-GACCTACAGAATTTAGAGAAGTGGG-AAA-TGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAAATTACTCAGAAGCG--AATCCAATCATTGCC-AAT-----TACCACCTTGCATGGA-TACCAGTTAGTCACTGTT-T-TAA------AAGTA-CTCGGAGTCACCCTATCAGAAACATCACTCTTGGATTGACCACGTGGATGTAACC-A-AAAGGAATCCAACGCCATCCT---CAGCTTCTTCCGG-----AGAAATCTAG-CAAGTCTAC----CAACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCAATACTCGA-GTATGCCTC----ACATGT--C----TGGGGTCCG-C----------AAACATAGACAAGCTAGAACGTGTCGCAAGCGTAGGGCGACTAGG-TTTTTTATCGTGGG-CTACAAAATCACAGGCAGTGCAAGCCAAATGAAATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGCTTGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACT
gi|4 : ACAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AAAC-ATC-TTGAGCAGCATGGA-ATTCTTTCAGAC-A-AACAACATGGCTT-CA-G-AA-AA-CG---GAGGTCTT---ATGAAA-GTCAGTTGGCAA-TC--AC------TGCG-CA---------GGATCTTGCT--GCAAACCTTGGTA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAGATGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGG-CCCACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCTACTCTTATCTA--C-GCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGAAGACCTACAGAATTTAGAGAAGTGGG-AACATGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA-TACCAGTTAGTCACTGTT-T-A-------AAAGTACCTCGGAGTCACCCTATCAGACA-ATCACTCTTGGATTGACCACGTGGATGTAACCAA-AAAGGAATCCAACGCCATCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAC----CAACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCAATACTCGA-GTATGCCTC----ACATGT--C----TGGGGTCCG-C----------AAACATAGACAAGCTAGAACGTGTC-A-AGCGTAGGGCGACTAGGTTTTTTTATCGTGGG-CTACAAAATCACAGGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGC-TGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACTttgt
gi|5 : TTGACACCAAGGGAAT-AGG--CA-AATTGCTAGAAAAAC---TA-GACCTGCAC--AGGGCCCAGGGTCCTGAATCCATCCCTTCAA-AGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-AT-CTCCATAACCGAGAATCATCT-TTGAAGCATC-CATT-GGACAAGAT---GT-GGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TGTCTCTCTGA-CCTC--GATCTGC-CGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGG---T---G-AA-C-ATA-TTGAGAAGCATGGA-ATTCTTTCAGAAAA-AACAACATGGC-TTCA-G-AAGA--CG---GAGG---TCTTGTG-AAAGTCAGTTAGC-AATC--AT------CATA-CA---------GGATCTTTCT--GCAAGCCTGGGTG--Cttg
gi|6 : ccacaacaactactagtatgtcaaagacataccggtaattgacaatgggagcaaccccaaaaactttacgttcccatcttatcaagaagccaagagtactctccgacagtagtggtgtgatactactgaaaaggatgggaacgctgctacagtgtccaaaactcaaaacattctatataaatgaacgaataaaaattactgccggtttggtcaactagctagaacagcggttgtcagagggttcaaacacacgaccgctaacctgcaaaaaattggtattccttagagtatgaatcacacttccatc-C-ACC-TGGAGGA-CTTGAACATTCTGTCCGAT-A-ACCAACATGGATTCCG-A-AA-G--TA---GGGGTCAT---GTGAAAA-TCAACTGG----TC--AT------CTGA-CATCACTAGAAGGAACT-GTTAGGCA-GCTTA-ACA--CAGTAGACCAAATCAAATATTCTGC--T-ATA------TAGA-------CTTTTCTAA--------AGCATTTGACAAGGTCCAGCACCAGAGAC-------TTCTTCACAAGT-GCCACCACTATCTG-ATCGGGGAAACACTCTCCAGTAGACTG---------CCAG-GT--TCCTTCAACAAC--ACAC--CCA---------GGAAGACGTATGCGAGGGAGTGA----------AGTTAGGAAGGTCA---CCAGTAACATCAGGTGTACCCCAGGGAACAGTCCTCAG-GTCACTCCTATTCCTTGTGTACATC---AATGACTTGCCTGAATTTGTAGCTTCAACTACCAGACT
gi|6 : taaacacatcctgcacactaccatcatcactCCTACAAAAT-----GAACTGGACAGGATAGCTGGCTCATGAGCTTCAACACTGACAAATGCGAGATG------CT---GAGGA-TCACCAATAAGCGGAAAACCACACATCTCCAAATACTAGTAC-ACCGTTCATGGAGTTCCC-CTAGCCTC-GTT-G-AAAACAGCGAAGTA-CTTGGgtgaaatttcagatcaccagctagaggactctaggatcctacaaaatgaactggacaggatagctggctcatgagcttcaacactgacaaatgcgagatgctgaggatcaccaataagcggaaaaccacacatctccaaatactagtacaccgttcatggagttcccctagcctcgttgaaaacagcgaagtacttgggacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|7 : taaacacatcctgcacactaccatcatcactcacctggaggacttgaacattctgtccgataaccaacatggattccgaaagtaggggtcatgtgaaaatcaactggtcatctgacatcactagaaggaactgttaggcagcttaacacagtagaccaaatcaaatattctgctatatagacttttctaaagcatttgacaaggtccagcaccagagacttcttcacaagtgccaccactatctgatcggggaaacactctccagtagactgccaggttccttcaacaacacacccaggaagacgtatgcgagggagtgaagttaggaaggtcaccagtaacatcaggtgtaccccagggaacagtcctcaggtcactcctattccttgtgtacatcaatgacttgcctgaatttgtagcttcaactaccagactgtgaaatttcagatcaccagctagaggactctaggatCC-A-AAA--AACCCAACGCCAGCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAT----CAACCCAGATC-AAATCCCAGTGCTACAA---AACACT--TGTCA-------ATACTCGA-GTATGCCTC----AACTGT--C----TGGGATTCGTNNNNNTGCCGTAAACATAGACAAGCTAGAATGTGTC-C-AACGTAGGGTGGCTAGG-TTTGTTGTTGG-GGACTACAAACCCACAAGAAGTGCAAGCCAAATG--ATCCCTGACCTAGAAGGGCCTTCCTTACAGCAGGGTAGAGAAGAATGCAAGG----TTGTGC-TGATGTACAGGATCATGTACACACTTGTGGACATACCAGTCACA-GCA---TACCTACACCCACTCTGCAGCATCACTCGTGGACACTCACTCCGGCCCGCAATTCCCTTCTGCAGGACTGGTGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTTGACTA--TGGGACC--AGCTTTCAGAGCACCTTGTCACTACAAAGTCCCTCGAGACCTTCCATTTTA-TGCAGGGCTTTAAGGCACATTTACTAGAGCTTT--CGTCGCCGTTTTAACCT---GTTAT--TTTA-A-TCTG--CACT-TTCA----CCGCAATTCACAGTCACTGTAAATAT-AGCACTAAGTGCAACAATGCTCC------AGAGA---GAGCCCTGCACT-C-ATTTGGAAG-GAGAAgacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|8 : ATTGA------TACAAT-ACATATTTCTAGA-------CTTTAGCAATTTTAAAAGGCATTCGACAAAGTTCCCCACCAACACC-------TAGCTCACAAGTCGTC-CCACAA-CGGCATAGGGGG--CACCTTGC--T-----GGAT------TAAGAAC--TTCTTGAGTGACTGGCAC--C-A---------GAGAACTCT--------GATAGA----CAAC-CACTCAACAGAGCCAGCACCAGTGATTTCTGGAGTGTCACATGGCTCAGTTCTGGG-CCCACTGCTCGTTCCTCTGTACATAATTAACGATATGCCGGATAGAGCAAAATCAACTACCAGGCTCTTTGCAGACAACAGTCTAT-----TCTA--CTGCAAAATCAA------GTCAGACTGTAATACCTTACAGGAAGACCTACGCAAGTTAGAGGAGTGGA-AACATGATTGGCAGATGTCCTTCAACATCTCTTAATGTGAGGTA------TTTAAAAGAG-TTACTCGGAAGCGG-AATACAATCATTGCC-AAT-----TAC-ACCCTGC-----------------------T-A-AAA--GGGAAAGTATCTTGGAGTCTCCCTATCGGACA-AGCTCTCTTGGACTGA
gi|9 : A-CCTC--AGTTCACATGCAAAAT---CTAG----------AACAACATCGT--A-TGTAGC-AGGCAATTGCG-AC-C-ATC-TAGA-CAACA-GGA---CCTCACGAATTGCAACAGCATGGCTTTCA-G-AA-A--CAACCGAA----TCGTGTGAGA--------GCCAAATCTGATTCCTGACGTT-CA---------CGACCTTGCC--AAGAGTATGGATGAAC-GAACAGCAAACTGA------C-C--TGATAC--TCCT-GA-------TTTTTCAAA--------GGCCTTT-ATAAGGTTCCTCACAAGCGCCTTCTTTATAA-TCAAAA--TAAC----CTA-TGGTATTCGGAA--CA----GC--T---CTGCATTCATGATAAGGACTTTTCTTGAG--GCCGACACAGC-AGTTTTATTGGAGAG------------GAGTGAAGTCCAACACAGTT-TCCTGTCCA-----------CTCCGGCGTCCCACAAGGAGC-GTCTTAGA-CCT-CTGCTG-TTCCTCTAT-TATT---AACGACCTACCTGAGGCAGTA
Alignments
lowQualScore : 11 1 111 11 3333333 33333 1 111 1 1 222 33333333333 11111111 2222222222 1 1 1111 1 11 1111111 1 111 111111 111111 1 1111111 22222222 1111111 111111 222222222 22222222 11111 111 222 111 1 222222 111 11111 11 111 11111 111 111 11111 1111 111 1111 1111 222222222222 111 22222222 1111 111 11 11 11 22222222 11 2222 4444444444 1 1111 1 2222222 111 1111111 1
lowQualScore : 8 11 8 0 666 8 11 3 1 3 7 7777777 7 00000 3 999 3 1 2 000 5 4 0 1 1 5 5 77 5 5 5 0 22222222222 66666666 5 77 5 66 5 88 5 1111111111 5 66 5 0 888 5 3 4 4 9999 0 8 4 00 777 5555555 0 7 4 111 66 66 777777 6666 66 1 66 3 666666 3 77 1 77 1 8888888 11 00000000 0 0 8888888 1 22 5 5 2 77 77 5 0 666666 0 77 0 77 5 888888888 3 00000000 0 22222 88 8 0 1 5 22 000 1 222 111 0 8 3 0 1 1 0 1 6 33 222222 000 5 66 5 44444 5 33 55 0 1 222 66666 5 1 5 1 1 111 33 1 111 66666 6 4444 6 3 111 99 99 6 4444 1 99 4444 333333333333 1 000 6 1 44444444 99 3 7777 6 6 111 8 33 0 33 33 1 22222222 77 55 3 3333 6 99 0000000000 1 2222 1 2222222 777 6666666 0
lowQualScore : . .. . . ... . .. . . . . ....... . ..... . ... . . . ... . . . . . . . .. . . . . ........... ........ . .. . .. . .. . .......... . .. . . ... . . . . .... . . . .. ... ....... . . . ... .. .. ...... .... .. . .. . ...... . .. . .. . ....... .. ........ . . ....... . .. . . . .. .. . . ...... . .. . .. . ......... . ........ . ..... .. . . . . .. ... . ... ... . . . . . . . . . .. ...... ... . .. . ..... . .. .. . . ... ..... . . . . . ... .. . ... ..... . .... . . ... .. .. . .... . .. .... ............ . ... . . ........ .. . .... . . ... . .. . .. .. . ........ .. .. . .... . .. .......... . .... . ....... ... ....... .
lowQualScore : 0 00 0 6 444 0 00 8 0 7 3 7777777 3 33333 3 000 3 0 0 000 7 3 7 4 3 7 7 99 7 7 7 7 99999999999 11111111 7 99 0 99 0 22 0 9999999999 0 99 0 5 888 0 3 4 4 4444 7 9 4 66 888 9999999 0 3 4 222 11 11 222222 9999 11 4 99 5 444444 0 99 4 99 7 6666666 33 77777777 7 4 6666666 7 00 7 7 7 99 99 0 7 444444 1 99 1 99 7 666666666 9 77777777 7 99999 77 9 3 0 7 44 000 0 000 222 8 0 6 6 4 4 8 0 7 22 111111 000 7 44 7 33333 7 66 77 4 4 000 77777 1 7 7 0 0 666 55 0 777 77777 7 2222 7 5 777 22 22 7 2222 0 22 2222 777777777777 0 222 7 0 00000000 22 2 0000 7 7 777 8 88 2 88 88 0 33333333 99 77 6 1111 7 22 0000000000 4 1111 4 9999999 555 4444444 0
consensus : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAANGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTCTTTCAGA-CA-AACAACATGGCTTTCA-GAA-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGG-CAAAT--C--AT------CGC--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGG-CCCACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGGTCTACTCTTATCTA-CCGCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTT-A-AAA--GGGAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAAGGAANCCAACGCCAGCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAC----CAACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCAATACTCGA-GTATGCCTC----ACNTGT--C----TGGGATCCG-CATACTGCCGTAAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTGTTGTCG--GG-CTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCTTAGGTT-T--TTTA-A-TCTG-CCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
Reference ( family-996 ) : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAAGGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTCTTTCAGANCA-AACAACATGGCTTTCA-GAA-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGG-CAAAT--C--AT------CGT--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGG-CCCACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGGTCTACTCTTATCTA-CTGCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTT-A-AAA--GGGAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAAGGAANCCAACGCCAGCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAC----CAACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCAATACTCGA-GTATGCCTC----ACNTGT--C----TGGGATCCG-CATACTGCCGTAAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTNTTGTCGT-GG-CTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCTTAGGTT-T--TTTA-A-TCTG-CCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
gi|1 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCAAAAAGACCTGCACCAAAGGCC-AGGGTC-TGACTCCATCCCTCCAATGT-CCTAAAAG-AGGAAGAGTCGCAA-GGAGG--A-GCTCCATTACTGAGGATTGAT-----GAAGCAACACTCTCGGATAAGGT---AT-GGTCACAGATGAC--GAAGCAGGCCCTTCTCACAC-CCAT-CTTC--AA-GA-A-CGGTAACCGTAAAACCC-----------CTGCA----A--AAT-ACAGACC--TATCTCTCTGT-CCTC--AGTCTGC-TGCAAGAC-ACTT-G----------AA-A-CATAGT--A-CGTAGCCAGGTGAT---G-AAACTTC-TTGTGCAGCACCAA-ATTCTTTCA-AACA-ATCAACAAAGCTT-CACGAA-C--CG---AAGGTCTT-TTG---AAAGTCAGTTGG-CAA-T--A--AC------CGT--G-CCTGATCTTGCT--CCAAGCCTGGATG--TTGGAGAGCAGATTGA------TGC--T-ATAC--TTCTAGA-------CTTTAGCAA--------GGCATTCGACAAGGTTCCCCACCAACGCC-------TAGTTCAGAGGTTATC-CCACTA-GGGCATCATGGG--CACCTTGC--TAAACTGGTT------TAAGAGC--TTCTTGAGTGACCGGCAC--C-A---------GAGAGTCCT--------GATTGA----AAAC-CACTCATCAGAGCCAGCACCAGTGACTTCTGGGGTGCCACAGGGCTCAGTCCTGGGCCCCACCTCTCTTTCTTCTGTACATA---AACGATCTGCTGGAGAGAGCAAAATCAACTACCAGGCTCTTCGCAGACGACAGCCTAC---TA--TA-CTGCTAAATCAAGTCAGCGTCAGACTGCAATACCTTACGGGAAGACCTACAGAAGTTAGAGGAGTGGG-GTAATGATTGGCAGATGTCCTCTAACCCCTCTAAATGCGAGGTAT-----TT---AAGAA-GTACCCTGAAGCGC-AATCCGATC--TGCC-AAT-----TAC-ACCCTGCATGGG--CACCATTTAGCCACTGTTAA-AAA--GAGAAAGTATCTTAGAGTCACCCTATCGGACA-AGCTCTCTAGGACTGACCACGTGGA---------------AAGTCAACACCAGCCTGAGCAGCCTTCTCCGA-----AGAAATCTAG-CAATTCTACCATGCAACGCAGACT-AAATCCCAGTGCT-TAA--------T--TGTCAGA--CCAATCCTCAA-GTATGCCTC----ATCTGT--CTGCATGGGATCCG-CATACTTCCGTCAATATAGACAAGCTAGAACGTTTC-T-AGCGTAGGGCGGCTAGG-TTTGTTGTCGG-GA-CTACAAAACTACAAGTACTACAAGCCAAATG--ATCCTTGACCTGGAATGACCTTCCTTACAGCAGCACAGAGAAGAAAGCAAGGAACCTTGTAC-TGATGTACAGGATCATGTACGCACTTGTGGACATACCAGTCGCATGCAGTTTATCTACAT-CATTCTGCAGCATCACTCG-GGACACTCACTCCGATTCGCAATTCCCTTCTGCAGGACTGATGTATATACCGTTATTCCCTCTTCCACTCCGGTATTCGACTA--TGGAACCTGAGCTTTCAGAGCATCTTGTCACTGCAGAGTCCTTCGAGACCTTC------A-AG
gi|10 : tgggccacaacagccatgtcaaaacatcatcgacaatgggagcaacccctttgaagaaactttacagctacatgtacatcaaccgcaaaagatgtgacagtagtggtgatggacactatatgaaaaaggatgccatcggcattagtgacccaaaacttaaaacattccattatagattaacagtttctcaagtgttttttactaaagaagattttcaagaagtccaacaattgacattaaaccttttccagaaatgggaaaccccccaaaaaccctcccatggAAATATTTTGGTGTCA--------GACA-AGCTCACGTGGAACGAGCATTTGGATGCAACT-ATAATGGAGATCAACAACAGTCT---AAGCTTTCTACGGATCAAAGAATTCAAGATAGGTC-AC----CGATCCTAACCGAAACACCAGTACGTCAGGACAACATTAGCGT-AGGTCCCA----TCTACGTAGGTCCCAACTACATGTACC----TAGGATCCC-TATGCAGCCAACAATATTGACAACTTAGAAGGCGTC-C-AACAAAGAATGCCAGGG-TTTGTTGT------------AGGCGACTAGCAATTTGAGTC-------ATTCGTGACTTATAATGAa
gi|11 : gGGACAAGGT---GT-GGTCCCAAATGACTGGAAGCAGGCCCTTGCCACAC-CCAT-CTTC--AA-AA-A-AGGTGACCGTACAACCCGGGGGGGGGGGCTGCAAGCTA--GCT-ATAGGCC--TATCTCACTGA-CCTC--AATCTGC-TGCAAGAC--CTC-GGGTGCAAGACAAAA-CATAGTACA-CATAGCCAAGCGAT---GAAA-CATC-TTGAGCAGCATGGA-ATACTTTCAGA-CA-AACAACATGGCTTCAA-GAA-A--CG---AA---TTTCTTGTG-AAAGTCAATTAA-C-AAT--C--AA------CGT--G-CAGGATCTTGCT--GCAAGCCTGGATG--
gi|12 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAG-AAAACCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGA
gi|13 : gtaaatgggcccacagcatctatgtcaaagacataattgacaatgggagcaaccccaaagactttacttccacatcaaaagcaaaatgtgttacagtagtggtgtgacactactgaaaaaggatggcatcgcttacagtgacacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgTTGACACCAAGGGAGT-AGC--CA-AATTGCTAG--AAACCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGACTc
gi|14 : atgggcccacagcatctatgtcaaagacataattgacaagagggagcaaccccaaagactttacttccacatcaaaagcaaattgtttacagtagtggtgtgacactactgaaaaaggatggcaatcgcttatcagtgacaacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgCAAGGT---GT-GGTC--AGATGAATTGGCATAGGAGCTTGTCACAGATCATACTTC--AACGA-AGAGGTGACCGCACAACTT-----------CTGC-------------CAAGCC--TATCTCGCTAA-CCTA--AATATGC-TACAAGAC-ACTT-G----------AACA-CATAGT--A-CATAGCCAGGTGAT---G-AACCATT-TGGAGCAACATGAA-CTACATTCAGACC--AACAGCATGG-TTTCAGGAA-A--TG---AAGA---CCTTGTG-AAAGTCAGTTAG-C-AAT--C--AT------CGT--G-CAGGATCTTGCT--GCAAGCCTGAAT
gi|15 : TTAACCCCTCTATATGCGAGGTACATGTATT---AAGAA-TAACTCAGAAGTGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGGG-CACCACTTAGCCACTGTT-A-AAAA-GGGAAAGTATCTTGGAGTCATCCTATCGGACA-AACTCTCTTGGAATGACCACGTGGATGTAACC-A-
gi|16 : CTGCAAAGACCCTTAAGAC---------------AGGGCTCTCAAGCACA--AACTAGAGCTTT--TGTCGCTGTTTTAACCT-AGGTT-T--TTTTTA-CCTG-C-ACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAATGCGACAATACTCCAGAGAGAGAGA---GAGCCCTGCACT-CAA-C-TGGAGG-GAGAAGccaaaaa
gi|17 : ACTGCAA-----CT---GAACTCA------A-GCCAGGGCTCTCA--CACA--AACTAGAGCTTTTTCGTCGCTGTTTTAAC--TAGGTT-T--TTT------TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-C-TGGAGGAAAGAAGa
gi|18 : CAGGGCTCTCAGACACA--AACTAGAGCTTTTTCGTCGCTGTTTTAAC--TAGGTT-T--TTT------TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-C-TGGAGGAAAGAAG
gi|19 : gcGACCTTC------AAGGCATGGCTCTCGGGCACA--AACTAGAGCTTT--GGTCACTGTTTTGACCT---GTT-TCTTTTA-AGTCT--TCACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCAAGAAGTGTGACAATGCTCC------AGAGA---GAGCCCT----------C-TGGAAG-AAGa
gi|2 : gTTGACACAGAGGGAGTTAGGTGCATAATTGCTAGAATAAC---TA-GACCTGCAC--A-GGCCCAGGGTCCTGAATCCATCCCTTCAAGATTCCTGAAATTA-----AGTCGCAAAGGAGGCCATACTCCATAACCGAGAATC-ATCTCTTGAAGCATC-CAATTGGACAAGAT---GTTGGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCCGAAA-GAGA-AGGTGACCGTA-AACCCG----------CTGCG----ACCACTGACAGGTCGCTGTC-CTCTGAGCCTCTGAATCTGC-CGCGAGACCACTTTG----------AACG-CATAGT--AACATAGCCAGG---T---G-AA-CATAATTGAGAAGCATGGA-ATTCTTTCAGAAAA-AACAACATGGCTTTCA-GAG-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTAG-CAAAT--C--ATT-----CAT--AACAGGACTTTCTT--GCAAGCCTGGGTG--CTGG------GATTGA------TCC--TGACAC--TGCTAAATCCATTACTTTGCCAA--------AGCACTTCACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGATGTC-CTACTA-CGTCATCAGGGG--CACCTTGC--TAAACTGGAT------TGGGAGC--TTCTTGAGTAACCGGCTC--C-A---------GAGAGTCCT--------GATTGA----CAAC-TACTCATCAGAGCCAGCACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGG-CTCACTGCTCTTTCTTCTGTACATA---AACGATCTGCCGGACAGAATATGATTAATTGCCAGGCTCTTCGCAGATGA--GTCTTCTCTTATCTA-C-GCAAAATCAAGTCAGCGTCAGACTGCAATATCATAGATGAAGATCTACAGAAGTTAGAGGAGTGGG-AAAGTGATTGGCAGATGTCCTTCAACCCCTCTAAATGAGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTT-ATAAA--GGGAAAGTATCTTGGAGTCATCCTATTGTATA-AGCACCCTTGGAATGACCACCTGGATGTAACC-ACAAAGAAAGCCAACGCCAGTCT---CAGCTTTCTCTGG-----AGAAATCTAG-CAAGTCTAC----GAACTCAGACC-AAATCCCAGTGCTACAA---AACACT--TGTCAGG--TCAATACTCGA-TTATGCCTC----ACCTGT--C----TGGAATCCG-CATACTGCCATAAACATAGATAAGCT-------GTC-C-AGCGTAGGGCGGCTAGG-TTTA--------GG---ACAAAACCACAAGCAATGCAAGCCAAATG--ATCCTTGACTTGGAATGGCTTTCCTCACAGCAGTGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCTGCA-GCA---TATTTACACCCACTCTGCAGGATCACTCGTGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTATTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTGACTGCAAAGTCCCTCGGGACCTTC------A-GGCAGGGCTCTTAGGCACA--AACTAAAGCTTT--TGTCGCCGTTTC--CCTCCGGTA-T--TCAA-A-TATG--CACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATTCTCC------GGAGA---GAACCCTGCACT-C-A-TGTGGAAG-AAGAAG
gi|20 : ATAC--CGTTATTCCTTTATCCCTTCCGGTAATCGCCTAGATGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAATCCCTCGAGACCTTCA-----A-GGCAGGGCTATCGGACACA--AACTAGAGCTTT--CGTCGCCGTTTTCACCT
gi|21 : CC-TTCGAGACCTTCAAGACA--GTCATGGTAAATAA-AGCACTAAGTGCGACAATGCTTC--------AGA---GAGCCCTGCAAT-CAA-T-TGGAGG-AACAAGat
gi|22 : gtTGC-TGATGTACAGGATCATGTACGCACTTGTGAACATACCAGCCGCA-GCA---Taaa
gi|23 : tgtaatgtttaaTAAATGTGACAATGCTCC--------AGA---GAGCCCTGCACTCC-A-T-TGGAAG-ATGAAG
gi|3 : CAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CC-C--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTCTTTCAGA-CA-AACAACATGGCTT-CA-GAA-AAACG---GAGGTCTT---ATGAAA-GTCAGTTGG-CAA-T--C--AC------TGC--G-CAGGATCTTGCT--GCAAACTTGG-TA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAATTGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-AA--------GAGAGTCCT--------GAGTGA----CAAC--ACTCATCAGGGC-AACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGG-CCCACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCTACTCTTATCTAACCGCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGA-GACCTACAGAATTTAGAGAAGTGGG-AAA-TGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAAATTACTCAGAAGCG--AATCCAATCATTGCC-AAT-----TACCACCTTGCATGGA--TACCAGTTAGTCACTGTT-T-TAA------AAGTA-CTCGGAGTCACCCTATCAGAAACATCACTCTTGGATTGACCACGTGGATGTAACC-A-AAAGGAATCCAACGCCATCCT---CAGCTTCTTCCGG-----AGAAATCTAG-CAAGTCTAC----CAACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCAATACTCGA-GTATGCCTC----ACATGT--C----TGGGGTCCG-C----------AAACATAGACAAGCTAGAACGTGTCGCAAGCGTAGGGCGACTAGG-TTTTTTATCGTGGG-CTACAAAATCACAGGCAGTGCAAGCCAAATGAAATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGCTTGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACT
gi|4 : ACAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AAACATC-TTGAGCAGCATGGA-ATTCTTTCAGA-CA-AACAACATGGCTT-CA-GAA-AA-CG---GAGGTCTT---ATGAAA-GTCAGTTGG-CAA-T--C--AC------TGC--G-CAGGATCTTGCT--GCAAACCTTGGTA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAGATGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGG-CCCACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCTACTCTTATCTA-C-GCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGAAGACCTACAGAATTTAGAGAAGTGGG-AACATGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTT-T-A-------AAAGTACCTCGGAGTCACCCTATCAGACA-ATCACTCTTGGATTGACCACGTGGATGTAACCAA-AAAGGAATCCAACGCCATCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAC----CAACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCAATACTCGA-GTATGCCTC----ACATGT--C----TGGGGTCCG-C----------AAACATAGACAAGCTAGAACGTGTC-A-AGCGTAGGGCGACTAGGTTTTTTTATCGTGGG-CTACAAAATCACAGGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGC-TGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACTttgt
gi|5 : TTGACACCAAGGGAAT-AGG--CA-AATTGCTAGAAAAAC---TA-GACCTGCAC--AGGGCCCAGGGTCCTGAATCCATCCCTTCAAAGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-AT-CTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CATT-GGACAAGAT---GT-GGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TGTCTCTCTGA-CCTC--GATCTGC-CGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGG---T---G-AA-CATA-TTGAGAAGCATGGA-ATTCTTTCAGAAAA-AACAACATGGC-TTCA-GAAGA--CG---GAGG---TCTTGTG-AAAGTCAGTTAG-C-AAT--C--AT------CAT--A-CAGGATCTTTCT--GCAAGCCTGGGTG--Cttg
gi|6 : ccacaacaactactagtatgtcaaagacataccggtaattgacaatgggagcaaccccaaaaactttacgttcccatcttatcaagaagccaagagtactctccgacagtagtggtgtgatactactgaaaaggatgggaacgctgctacagtgtccaaaactcaaaacattctatataaatgaacgaataaaaattactgccggtttggtcaactagctagaacagcggttgtcagagggttcaaacacacgaccgctaacctgcaaaaaattggtattccttagagtatgaatcacacttccatc-CACC-TGGAGGA-CTTGAACATTCTGTCCGAT-A-ACCAACATGGATTCCG-AAA-G--TA---GGGGTCAT---GTGAAAA-TCAACTGGTCATCTGAC--AT------CACTAG-AAGGAACT-GTTAGGCA-GCTTA-ACA--CAGTAGACCAAATCAAATATTCTGC--T-ATA------TAGA-------CTTTTCTAA--------AGCATTTGACAAGGTCCAGCACCAGAGAC-------TTCTTCACAAGT-GCCACCACTATCTG-ATCGGGGAAACACTCTCCAGTAGACTG---------CCAG-GT--TCCTTCAACAAC--ACAC--CCA---------GGAAGACGTATGCGAGGGAGTGA----------AGTTAGGAAGGTCA---CCAGTAACATCAGGTGTACCCCAGGGAACAGTCCTCAG-GTCACTCCTATTCCTTGTGTACATC---AATGACTTGCCTGAATTTGTAGCTTCAACTACCAGACT
gi|6 : taaacacatcctgcacactaccatcatcactCCTACAAAAT-----GAACTGGACAGGATAGCTGGCTCATGAGCTTCAACACTGACAAATGCGAGATG------CT---GAGGA-TCACCAATAAGCGGAAAACCACACATCTCCAAATACTAGTAC-ACCGTTCATGGAGTTCCC--CTAGCCTC-GTT-G-AAAACAGCGAAGTA-CTTGGgtgaaatttcagatcaccagctagaggactctaggatcctacaaaatgaactggacaggatagctggctcatgagcttcaacactgacaaatgcgagatgctgaggatcaccaataagcggaaaaccacacatctccaaatactagtacaccgttcatggagttcccctagcctcgttgaaaacagcgaagtacttgggacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|7 : taaacacatcctgcacactaccatcatcactcacctggaggacttgaacattctgtccgataaccaacatggattccgaaagtaggggtcatgtgaaaatcaactggtcatctgacatcactagaaggaactgttaggcagcttaacacagtagaccaaatcaaatattctgctatatagacttttctaaagcatttgacaaggtccagcaccagagacttcttcacaagtgccaccactatctgatcggggaaacactctccagtagactgccaggttccttcaacaacacacccaggaagacgtatgcgagggagtgaagttaggaaggtcaccagtaacatcaggtgtaccccagggaacagtcctcaggtcactcctattccttgtgtacatcaatgacttgcctgaatttgtagcttcaactaccagactgtgaaatttcagatcaccagctagaggactctaggatCC-A-AAA--AACCCAACGCCAGCCT---CAGCTTTCTCCGG-----AGAAATCTAG-CAAGTCTAT----CAACCCAGATC-AAATCCCAGTGCTACAA---AACACT--TGTCA-------ATACTCGA-GTATGCCTC----AACTGT--C----TGGGATTCGTNNNNNTGCCGTAAACATAGACAAGCTAGAATGTGTC-C-AACGTAGGGTGGCTAGG-TTTGTTGTTGG-GGACTACAAACCCACAAGAAGTGCAAGCCAAATG--ATCCCTGACCTAGAAGGGCCTTCCTTACAGCAGGGTAGAGAAGAATGCAAGG----TTGTGC-TGATGTACAGGATCATGTACACACTTGTGGACATACCAGTCACA-GCA---TACCTACACCCACTCTGCAGCATCACTCGTGGACACTCACTCCGGCCCGCAATTCCCTTCTGCAGGACTGGTGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTTGACTA--TGGGACC--AGCTTTCAGAGCACCTTGTCACTACAAAGTCCCTCGAGACCTTCCATTTTA-TGCAGGGCTTTAAGGCACATTTACTAGAGCTTT--CGTCGCCGTTTTAACCT---GTTAT--TTTA-A-TCTG--CACT-TTCA----CCGCAATTCACAGTCACTGTAAATAT-AGCACTAAGTGCAACAATGCTCC------AGAGA---GAGCCCTGCACT-C-ATT-TGGAAG-GAGAAgacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|8 : ATTGA------TACAAT-ACATATTTCTAGA-------CTTTAGCAATTTTAAAAGGCATTCGACAAAGTTCCCCACCAACACC-------TAGCTCACAAGTCGTC-CCACAA-CGGCATAGGGGG--CACCTTGC--T-----GGAT------TAAGAAC--TTCTTGAGTGACTGGCAC--C-A---------GAGAACTCT--------GATAGA----CAAC-CACTCAACAGAGCCAGCACCAGTGATTTCTGGAGTGTCACATGGCTCAGTTCTGGG-CCCACTGCTCGTTCCTCTGTACATAATTAACGATATGCCGGATAGAGCAAAATCAACTACCAGGCTCTTTGCAGACAACAGTCTAT-----TCTA-CTGCAAAATCAA------GTCAGACTGTAATACCTTACAGGAAGACCTACGCAAGTTAGAGGAGTGGA-AACATGATTGGCAGATGTCCTTCAACATCTCTTAATGTGAGGTA------TTTAAAAGAG-TTACTCGGAAGCGG-AATACAATCATTGCC-AAT-----TAC-ACCCTGC------------------------T-A-AAA--GGGAAAGTATCTTGGAGTCTCCCTATCGGACA-AGCTCTCTTGGACTGA
gi|9 : A-CCTC--AGTTCACATGCAAAAT--CTA-G----------AACAACATCGT--A-TGTAGC-AGGCAATTGCG-AC-CATC-TAGA-CAACA-GGA---CCTCACGAATTGCAACAGCATGGCTTTCA-GAA-A--CAACCGAA----TCGTGTGAGA--------GC-CAAAT--CTGATTCCTGACGT--T-CACGACCTTGCC--AAGAGTATGGATGAAC-GAACAGCAAACTGA------C-C--TGATAC--TCCT-GA-------TTTTTCAAA--------GGCCTTT-ATAAGGTTCCTCACAAGCGCCTTCTTTATAA-TCAAAA--TAAC----CTA-TGGTATTCGGAA--CA----GC--T---CTGCATTCATGATAAGGACTTTTCTTGAG--GCCGACACAGC-AGTTTTATTGGAGAG------------GAGTGAAGTCCAACACAGTT-TCCTGTCCA-----------CTCCGGCGTCCCACAAGGAGC-GTCTTAGA-CCT-CTGCTG-TTCCTCTAT-TATT---AACGACCTACCTGAGGCAGTA
Alignments
lowQualScore : 11 1 111 11 3333333 33333 1 111 1 1 222 33333333333 11111111 2222222222 1 1 11111 1 11 1111111 1 111 111111 111111 1 1111111 22222222 1111111 111111 222222222 22222222 11111 111 222 111 111111 111 11111 11 222222 111 111 11111 1111 111 1111 1111 222222222222 111 222222222 1111 111 11 11 11 22222222 11 2222 4444444444 1 1111 1 2222222 111 1111111 1
lowQualScore : 8 11 8 0 666 8 11 3 1 1 7 7777777 7 00000 3 999 3 1 2 000 5 4 0 1 1 5 5 77 5 5 5 0 22222222222 66666666 5 77 5 66 5 88 5 1111111111 5 66 5 0 888 5 3 4 4 11111 4 0 4 0 8 4 00 777 5555555 0 7 4 111 66 66 777777 77777 66 1 66 3 666666 3 77 1 77 1 8888888 11 00000000 0 0 8888888 1 22 5 5 2 77 77 5 0 666666 0 77 0 77 5 888888888 3 00000000 0 22222 88 8 0 1 5 22 000 1 222 7777 444 0 1 1 0 1 6 33 666666 555 5 66 5 44444 5 33 55 0 1 66 222222 5 1 5 1 1 555 000 1 111 66666 6 4444 6 3 111 99 99 6 4444 1 99 4444 333333333333 1 000 6 1 000000000 99 3 7777 6 6 111 8 33 0 33 33 1 22222222 77 55 3 3333 6 99 0000000000 1 2222 1 2222222 777 6666666 0
lowQualScore : . .. . . ... . .. . . . . ....... . ..... . ... . . . ... . . . . . . . .. . . . . ........... ........ . .. . .. . .. . .......... . .. . . ... . . . . ..... . . . . . . .. ... ....... . . . ... .. .. ...... ..... .. . .. . ...... . .. . .. . ....... .. ........ . . ....... . .. . . . .. .. . . ...... . .. . .. . ......... . ........ . ..... .. . . . . .. ... . ... .... ... . . . . . . .. ...... ... . .. . ..... . .. .. . . .. ...... . . . . . ... ... . ... ..... . .... . . ... .. .. . .... . .. .... ............ . ... . . ......... .. . .... . . ... . .. . .. .. . ........ .. .. . .... . .. .......... . .... . ....... ... ....... .
lowQualScore : 0 00 0 6 444 0 00 8 0 0 3 7777777 3 33333 3 000 3 0 0 000 7 3 7 4 3 7 7 99 7 7 7 7 99999999999 11111111 7 99 0 99 0 22 0 9999999999 0 99 0 5 888 0 3 4 4 11111 4 1 4 7 9 4 66 888 9999999 0 3 4 222 11 11 222222 66666 11 4 99 5 444444 0 99 4 99 7 6666666 33 77777777 7 4 6666666 7 00 7 7 7 99 99 0 7 444444 1 99 1 99 7 666666666 9 77777777 7 99999 77 9 3 0 7 44 000 0 000 0000 444 6 4 4 8 0 7 22 444444 777 7 44 7 33333 7 66 77 4 4 33 444444 1 7 7 0 0 999 222 0 777 77777 7 2222 7 5 777 22 22 7 2222 0 22 2222 777777777777 0 222 7 0 222222222 22 2 0000 7 7 777 8 88 2 88 88 0 33333333 99 77 6 1111 7 22 0000000000 4 1111 4 9999999 555 4444444 0
consensus : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAANGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTTTCA-GAA-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGG-CAAAT--C--AT------CGC--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGGCCC-ACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGGTCTACTCTTATCTA-CCGCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTTA-AAA--GG-GAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAA-GGAANCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CNTGT--CTG----GGATCCG-CATACTGCCGTAAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTGTTGTC--GGG--CTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCTTAGGTT-T--TTTA-A-TCTG-CCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
Reference ( family-996 ) : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAANGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTTTCA-GAA-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGG-CAAAT--C--AT------CGC--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGGCCC-ACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGGTCTACTCTTATCTA-CCGCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTTA-AAA--GG-GAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAA-GGAANCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CNTGT--CTG----GGATCCG-CATACTGCCGTAAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTGTTGTC--GGG--CTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCTTAGGTT-T--TTTA-A-TCTG-CCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
gi|1 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCAAAAAGACCTGCACCAAAGGCC-AGGGTC-TGACTCCATCCCTCCAATGT-CCTAAAAG-AGGAAGAGTCGCAA-GGAGG--A-GCTCCATTACTGAGGATTGAT-----GAAGCAACACTCTCGGATAAGGT---AT-GGTCACAGATGAC--GAAGCAGGCCCTTCTCACAC-CCAT-CTTC--AA-GA-A-CGGTAACCGTAAAACCC-----------CTGCA----A--AAT-ACAGACC--TATCTCTCTGT-CCTC--AGTCTGC-TGCAAGAC-ACTT-G----------AA-A-CATAGT--A-CGTAGCCAGGTGAT---G-AAACTTC-TTGTGCAGCACCAA-ATTC-----TTTCAA-ACAAT-CAACAAAGCTT-CACGAA-C--CG---AAGGTCTT-TTG---AAAGTCAGTTGG-CAA-T--A--AC------CGT--G-CCTGATCTTGCT--CCAAGCCTGGATG--TTGGAGAGCAGATTGA------TGC--T-ATAC--TTCTAGA-------CTTTAGCAA--------GGCATTCGACAAGGTTCCCCACCAACGCC-------TAGTTCAGAGGTTATC-CCACTA-GGGCATCATGGG--CACCTTGC--TAAACTGGTT------TAAGAGC--TTCTTGAGTGACCGGCAC--C-A---------GAGAGTCCT--------GATTGA----AAAC-CACTCATCAGAGCCAGCACCAGTGACTTCTGGGGTGCCACAGGGCTCAGTCCTGGGCCCCACCTCTCTTTCTTCTGTACATA---AACGATCTGCTGGAGAGAGCAAAATCAACTACCAGGCTCTTCGCAGACGACAGCCTACT---AT--A-CTGCTAAATCAAGTCAGCGTCAGACTGCAATACCTTACGGGAAGACCTACAGAAGTTAGAGGAGTGGG-GTAATGATTGGCAGATGTCCTCTAACCCCTCTAAATGCGAGGTA------TTT--AAGAA-GTACCCTGAAGCGC-AATCCGATC--TGCC-AAT-----TAC-ACCCTGCATGGG--CACCATTTAGCCACTGTTA-AAA--AGAGAAAGTATCTTAGAGTCACCCTATCGGACA-AGCTCTCTAGGACTGACCACGTGGA----------------AAGTCAACACCAGCCTGAGCAGCCTTCTCCGAA-----GAAATCTAG-CAATTCTACCATGCAACGCAGACT-AAATCCCAGTGCT-TAA--------T--TGTCAGA--CCA-ATCCTCAAGTATGCCTCA----TCTGT--CTGCATGGGATCCG-CATACTTCCGTCAATATAGACAAGCTAGAACGTTTC-T-AGCGTAGGGCGGCTAGG-TTTGTTGTC--GGGA-CTACAAAACTACAAGTACTACAAGCCAAATG--ATCCTTGACCTGGAATGACCTTCCTTACAGCAGCACAGAGAAGAAAGCAAGGAACCTTGTAC-TGATGTACAGGATCATGTACGCACTTGTGGACATACCAGTCGCATGCAGTTTATCTACAT-CATTCTGCAGCATCACTCG-GGACACTCACTCCGATTCGCAATTCCCTTCTGCAGGACTGATGTATATACCGTTATTCCCTCTTCCACTCCGGTATTCGACTA--TGGAACCTGAGCTTTCAGAGCATCTTGTCACTGCAGAGTCCTTCGAGACCTTC------A-AG
gi|10 : tgggccacaacagccatgtcaaaacatcatcgacaatgggagcaacccctttgaagaaactttacagctacatgtacatcaaccgcaaaagatgtgacagtagtggtgatggacactatatgaaaaaggatgccatcggcattagtgacccaaaacttaaaacattccattatagattaacagtttctcaagtgttttttactaaagaagattttcaagaagtccaacaattgacattaaaccttttccagaaatgggaaaccccccaaaaaccctcccatggAAATATTTTGGTGTCA--------GACA-AGCTCACGTGGAACGAGCATTTGGATGCAACT-A-TAATGGAGATCAACAACAGTCT---AAGCTTTCTACGGATCAAAGAATTCAAGATAGGTC-ACCG----ATCCTAACCGAAACACCAGTACGTCAGGACAACATTAGCGT-AGGTCCCATCTAC----GTAGGTCCCAACTACATGTACCTA----GGATCCC-TATGCAGCCAACAATATTGACAACTTAGAAGGCGTC-C-AACAAAGAATGCCAGGG-TTTGTTGTA--GG-----------CGACTAGCAATTTGAGTC-------ATTCGTGACTTATAATGAa
gi|11 : gGGACAAGGT---GT-GGTCCCAAATGACTGGAAGCAGGCCCTTGCCACAC-CCAT-CTTC--AA-AA-A-AGGTGACCGTACAACCCGGGGGGGGGGGCTGCAAGCTA--GCT-ATAGGCC--TATCTCACTGA-CCTC--AATCTGC-TGCAAGAC--CTC-GGGTGCAAGACAAAA-CATAGTACA-CATAGCCAAGCGAT---GAAA-CATC-TTGAGCAGCATGGA-ATAC-----TTTCAG-ACAAA-CAACATGGCTTCAA-GAA-A--CG---AA---TTTCTTGTG-AAAGTCAATTAA-C-AAT--C--AA------CGT--G-CAGGATCTTGCT--GCAAGCCTGGATG--
gi|12 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAG-AAAACCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGA
gi|13 : gtaaatgggcccacagcatctatgtcaaagacataattgacaatgggagcaaccccaaagactttacttccacatcaaaagcaaaatgtgttacagtagtggtgtgacactactgaaaaaggatggcatcgcttacagtgacacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgTTGACACCAAGGGAGT-AGC--CA-AATTGCTAG--AAACCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGACTc
gi|14 : atgggcccacagcatctatgtcaaagacataattgacaagagggagcaaccccaaagactttacttccacatcaaaagcaaattgtttacagtagtggtgtgacactactgaaaaaggatggcaatcgcttatcagtgacaacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgCAAGGT---GT-GGTC--AGATGAATTGGCATAGGAGCTTGTCACAGATCATACTTC--AACGA-AGAGGTGACCGCACAACTT-----------CTGC-------------CAAGCC--TATCTCGCTAA-CCTA--AATATGC-TACAAGAC-ACTT-G----------AACA-CATAGT--A-CATAGCCAGGTGAT---G-AACCATT-TGGAGCAACATGAA-CTAC-----ATTCAG-ACCAA-CAGCATGG-TTTCAGGAA-A--TG---AAGA---CCTTGTG-AAAGTCAGTTAG-C-AAT--C--AT------CGT--G-CAGGATCTTGCT--GCAAGCCTGAAT
gi|15 : TTAACCCCTCTATATGCGAGGTACATGTATT---AAGAA-TAACTCAGAAGTGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGGG-CACCACTTAGCCACTGTTA-AAAA-GG-GAAAGTATCTTGGAGTCATCCTATCGGACA-AACTCTCTTGGAATGACCACGTGGATGTAACC-A-
gi|16 : CTGCAAAGACCCTTAAGAC---------------AGGGCTCTCAAGCACA--AACTAGAGCTTT--TGTCGCTGTTTTAACCT-AGGTT-T--TTTTTA-CCTG-C-ACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAATGCGACAATACTCCAGAGAGAGAGA---GAGCCCTGCACT-CAA-C-TGGAGG-GAGAAGccaaaaa
gi|17 : ACTGCAA-----CT---GAACTCA------A-GCCAGGGCTCTCA--CACA--AACTAGAGCTTTTTCGTCGCTGTTTTAAC--TAGGTT-T--TTT------TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-C-TGGAGGAAAGAAGa
gi|18 : CAGGGCTCTCAGACACA--AACTAGAGCTTTTTCGTCGCTGTTTTAAC--TAGGTT-T--TTT------TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-C-TGGAGGAAAGAAG
gi|19 : gcGACCTTC------AAGGCATGGCTCTCGGGCACA--AACTAGAGCTTT--GGTCACTGTTTTGACCT---GTT-TCTTTTA-AGTCT--TCACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCAAGAAGTGTGACAATGCTCC------AGAGA---GAGCCCT----------C-TGGAAG-AAGa
gi|2 : gTTGACACAGAGGGAGTTAGGTGCATAATTGCTAGAATAAC---TA-GACCTGCAC--A-GGCCCAGGGTCCTGAATCCATCCCTTCAAGATTCCTGAAATTA-----AGTCGCAAAGGAGGCCATACTCCATAACCGAGAATC-ATCTCTTGAAGCATC-CAATTGGACAAGAT---GTTGGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCCGAAA-GAGA-AGGTGACCGTA-AACCCG----------CTGCG----ACCACTGACAGGTCGCTGTC-CTCTGAGCCTCTGAATCTGC-CGCGAGACCACTTTG----------AACG-CATAGT--AACATAGCCAGG---T---G-AA-CATAATTGAGAAGCATGGA-ATTC-----TTTCAG-AAAAAACAACATGGCTTTCA-GAG-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTAG-CAAAT--C--ATT-----CAT--AACAGGACTTTCTT--GCAAGCCTGGGTG--CTGG------GATTGA------TCC--TGACAC--TGCTAAATCCATTACTTTGCCAA--------AGCACTTCACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGATGTC-CTACTA-CGTCATCAGGGG--CACCTTGC--TAAACTGGAT------TGGGAGC--TTCTTGAGTAACCGGCTC--C-A---------GAGAGTCCT--------GATTGA----CAAC-TACTCATCAGAGCCAGCACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGGCTC-ACTGCTCTTTCTTCTGTACATA---AACGATCTGCCGGACAGAATATGATTAATTGCCAGGCTCTTCGCAGATGA--GTCTTCTCTTATCTA-C-GCAAAATCAAGTCAGCGTCAGACTGCAATATCATAGATGAAGATCTACAGAAGTTAGAGGAGTGGG-AAAGTGATTGGCAGATGTCCTTCAACCCCTCTAAATGAGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTTATAAA--GG-GAAAGTATCTTGGAGTCATCCTATTGTATA-AGCACCCTTGGAATGACCACCTGGATGTAACC-ACAAA-GAAAGCCAACGCCAGTCT---CAGCTTTCTCTGGA-----GAAATCTAG-CAAGTCTACGA----ACTCAGACC-AAATCCCAGTGCTACAA---AACACT--TGTCAGG--TCA-ATACTCGATTATGCCTCA----CCTGT--CTG----GAATCCG-CATACTGCCATAAACATAGATAAGCT-------GTC-C-AGCGTAGGGCGGCTAGG-TTTA--------GG----ACAAAACCACAAGCAATGCAAGCCAAATG--ATCCTTGACTTGGAATGGCTTTCCTCACAGCAGTGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCTGCA-GCA---TATTTACACCCACTCTGCAGGATCACTCGTGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTATTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTGACTGCAAAGTCCCTCGGGACCTTC------A-GGCAGGGCTCTTAGGCACA--AACTAAAGCTTT--TGTCGCCGTTTC--CCTCCGGTA-T--TCAA-A-TATG--CACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATTCTCC------GGAGA---GAACCCTGCACT-C-A-TGTGGAAG-AAGAAG
gi|20 : ATAC--CGTTATTCCTTTATCCCTTCCGGTAATCGCCTAGATGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAATCCCTCGAGACCTTCA-----A-GGCAGGGCTATCGGACACA--AACTAGAGCTTT--CGTCGCCGTTTTCACCT
gi|21 : CC-TTCGAGACCTTCAAGACA--GTCATGGTAAATAA-AGCACTAAGTGCGACAATGCTTC--------AGA---GAGCCCTGCAAT-CAA-T-TGGAGG-AACAAGat
gi|22 : gtTGC-TGATGTACAGGATCATGTACGCACTTGTGAACATACCAGCCGCA-GCA---Taaa
gi|23 : tgtaatgtttaaTAAATGTGACAATGCTCC--------AGA---GAGCCCTGCACTCC-A-T-TGGAAG-ATGAAG
gi|3 : CAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CC-C--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTT-CA-GAA-AAACG---GAGGTCTT---ATGAAA-GTCAGTTGG-CAA-T--C--AC------TGC--G-CAGGATCTTGCT--GCAAACTTGG-TA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAATTGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-AA--------GAGAGTCCT--------GAGTGA----CAAC--ACTCATCAGGGC-AACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGGCCC-ACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCTACTCTTATCTAACCGCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGA-GACCTACAGAATTTAGAGAAGTGGG-AAA-TGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAAATTACTCAGAAGCG--AATCCAATCATTGCC-AAT-----TACCACCTTGCATGGA--TACCAGTTAGTCACTGTTT-TAA-------AAGTA-CTCGGAGTCACCCTATCAGAAACATCACTCTTGGATTGACCACGTGGATGTAACC-A-AAA-GGAATCCAACGCCATCCT---CAGCTTCTTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CATGT--CTG----GGGTCCG-C----------AAACATAGACAAGCTAGAACGTGTCGCAAGCGTAGGGCGACTAGG-TTTTTTATCGTGGG--CTACAAAATCACAGGCAGTGCAAGCCAAATGAAATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGCTTGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACT
gi|4 : ACAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AAACATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTT-CA-GAA-AA-CG---GAGGTCTT---ATGAAA-GTCAGTTGG-CAA-T--C--AC------TGC--G-CAGGATCTTGCT--GCAAACCTTGGTA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAGATGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGGCCC-ACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCTACTCTTATCTA--CGCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGAAGACCTACAGAATTTAGAGAAGTGGG-AACATGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTTT-A--------AAAGTACCTCGGAGTCACCCTATCAGACA-ATCACTCTTGGATTGACCACGTGGATGTAACCAA-AAA-GGAATCCAACGCCATCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CATGT--CTG----GGGTCCG-C----------AAACATAGACAAGCTAGAACGTGTC-A-AGCGTAGGGCGACTAGGTTTTTTTATCGTGGG--CTACAAAATCACAGGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGC-TGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACTttgt
gi|5 : TTGACACCAAGGGAAT-AGG--CA-AATTGCTAGAAAAAC---TA-GACCTGCAC--AGGGCCCAGGGTCCTGAATCCATCCCTTCAAAGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-AT-CTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CATT-GGACAAGAT---GT-GGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TGTCTCTCTGA-CCTC--GATCTGC-CGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGG---T---G-AA-CATA-TTGAGAAGCATGGA-ATTC-----TTTCAGAAAAAA-CAACATGGC-TTCA-GAAGA--CG---GAGG---TCTTGTG-AAAGTCAGTTAG-C-AAT--C--AT------CAT--A-CAGGATCTTTCT--GCAAGCCTGGGTG--Cttg
gi|6 : ccacaacaactactagtatgtcaaagacataccggtaattgacaatgggagcaaccccaaaaactttacgttcccatcttatcaagaagccaagagtactctccgacagtagtggtgtgatactactgaaaaggatgggaacgctgctacagtgtccaaaactcaaaacattctatataaatgaacgaataaaaattactgccggtttggtcaactagctagaacagcggttgtcagagggttcaaacacacgaccgctaacctgcaaaaaattggtattccttagagtatgaatcacacttccatc-CACC-TGGAGGA-CTTGAACATTC-----TGTCCG-ATAAC-CAACATGGATTCCG-AAA-G--TA---GGGGTCAT---GTGAAAA-TCAACTGGTCATCTGAC--AT------CACTAG-AAGGAACT-GTTAGGCA-GCTTA-ACA--CAGTAGACCAAATCAAATATTCTGC--T-ATA------TAGA-------CTTTTCTAA--------AGCATTTGACAAGGTCCAGCACCAGAGAC-------TTCTTCACAAGT-GCCACCACTATCTG-ATCGGGGAAACACTCTCCAGTAGACTG---------CCAG-GT--TCCTTCAACAAC--ACAC--CCA---------GGAAGACGTATGCGAGGGAGTGA----------AGTTAGGAAGGTCA---CCAGTAACATCAGGTGTACCCCAGGGAACAGTCCTCAGGTC-ACTCCTATTCCTTGTGTACATC---AATGACTTGCCTGAATTTGTAGCTTCAACTACCAGACT
gi|6 : taaacacatcctgcacactaccatcatcactCCTACAAAAT-----GAACTGGACAGGATAGCTGGCTCATGAGCTTCAACACTGACAAATGCGAGATG------CT---GAGGA-TCACCAATAAGCGGAAAACCACACATCTCCAAATACTAGTAC-ACCGTTCATGGAGTTCCC--CTAGCCTC-GTTG-AAAACAG-CGAAGTA-CTTGGgtgaaatttcagatcaccagctagaggactctaggatcctacaaaatgaactggacaggatagctggctcatgagcttcaacactgacaaatgcgagatgctgaggatcaccaataagcggaaaaccacacatctccaaatactagtacaccgttcatggagttcccctagcctcgttgaaaacagcgaagtacttgggacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|7 : taaacacatcctgcacactaccatcatcactcacctggaggacttgaacattctgtccgataaccaacatggattccgaaagtaggggtcatgtgaaaatcaactggtcatctgacatcactagaaggaactgttaggcagcttaacacagtagaccaaatcaaatattctgctatatagacttttctaaagcatttgacaaggtccagcaccagagacttcttcacaagtgccaccactatctgatcggggaaacactctccagtagactgccaggttccttcaacaacacacccaggaagacgtatgcgagggagtgaagttaggaaggtcaccagtaacatcaggtgtaccccagggaacagtcctcaggtcactcctattccttgtgtacatcaatgacttgcctgaatttgtagcttcaactaccagactgtgaaatttcagatcaccagctagaggactctaggatCC-A-AAA---AACCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTATCA----ACCCAGATC-AAATCCCAGTGCTACAA---AACACT--TGTCA--------ATACTCGAGTATGCCTCA----ACTGT--CTG----GGATTCGTNNNNNTGCCGTAAACATAGACAAGCTAGAATGTGTC-C-AACGTAGGGTGGCTAGG-TTTGTTGTT--GGGGACTACAAACCCACAAGAAGTGCAAGCCAAATG--ATCCCTGACCTAGAAGGGCCTTCCTTACAGCAGGGTAGAGAAGAATGCAAGG----TTGTGC-TGATGTACAGGATCATGTACACACTTGTGGACATACCAGTCACA-GCA---TACCTACACCCACTCTGCAGCATCACTCGTGGACACTCACTCCGGCCCGCAATTCCCTTCTGCAGGACTGGTGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTTGACTA--TGGGACC--AGCTTTCAGAGCACCTTGTCACTACAAAGTCCCTCGAGACCTTCCATTTTA-TGCAGGGCTTTAAGGCACATTTACTAGAGCTTT--CGTCGCCGTTTTAACCT---GTTAT--TTTA-A-TCTG--CACT-TTCA----CCGCAATTCACAGTCACTGTAAATAT-AGCACTAAGTGCAACAATGCTCC------AGAGA---GAGCCCTGCACT-C-ATT-TGGAAG-GAGAAgacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|8 : ATTGA------TACAAT-ACATATTTCTAGA-------CTTTAGCAATTTTAAAAGGCATTCGACAAAGTTCCCCACCAACACC-------TAGCTCACAAGTCGTC-CCACAA-CGGCATAGGGGG--CACCTTGC--T-----GGAT------TAAGAAC--TTCTTGAGTGACTGGCAC--C-A---------GAGAACTCT--------GATAGA----CAAC-CACTCAACAGAGCCAGCACCAGTGATTTCTGGAGTGTCACATGGCTCAGTTCTGGGCCC-ACTGCTCGTTCCTCTGTACATAATTAACGATATGCCGGATAGAGCAAAATCAACTACCAGGCTCTTTGCAGACAACAGTCTAT-----TCTA-CTGCAAAATCAA------GTCAGACTGTAATACCTTACAGGAAGACCTACGCAAGTTAGAGGAGTGGA-AACATGATTGGCAGATGTCCTTCAACATCTCTTAATGTGAGGTA------TTTAAAAGAG-TTACTCGGAAGCGG-AATACAATCATTGCC-AAT-----TAC-ACCCTGC------------------------TA-AAA--GG-GAAAGTATCTTGGAGTCTCCCTATCGGACA-AGCTCTCTTGGACTGA
gi|9 : A-CCTC--AGTTCACATGCAAAAT--CTA-G----------AACAACATCGT--A-TGTAGC-AGGCAATTGCG-AC-CATC-TAGA-CAACA-GGA-CCTCACGAATTGCA------A-CAGCATGGCTTTCA-GAA-A--CAACCGAA----TCGTGTGAGA--------GC-CAAAT--CTGATTCCTGACGT--T-CACGACCTTGCC--AAGAGTATGGATGAAC-GAACAGCAAACTGA------C-C--TGATAC--TCCT-GA-------TTTTTCAAA--------GGCCTTT-ATAAGGTTCCTCACAAGCGCCTTCTTTATAA-TCAAAA--TAAC----CTA-TGGTATTCGGAA--CA----GC--T---CTGCATTCATGATAAGGACTTTTCTTGAG--GCCGACACAGC-AGTTTTATTGGAGAG------------GAGTGAAGTCCAACACAGTT-TCCTGTCCA-----------CTCCGGCGTCCCACAAGGAGC-GTCTTAGACCT--CTGCTG-TTCCTCTAT-TATT---AACGACCTACCTGAGGCAGTA
Alignments
lowQualScore : 11 1 111 11 3333333 33333 1 111 1 1 222 33333333333 11111111 2222222222 1 1 11111 1 11 1111111 1 111 111111 111111 1 1111111 22222222 1111111 111111 222222222 22222222 11111 111 222 111 111111 111 11111 11 222222 111 111 11111 1111 111 1111 1111 222222222222 111 222222222 1111 111 11 11 11 22222222 11 2222 4444444444 1 1111 1 2222222 111 1111111 1
lowQualScore : 8 11 8 0 666 8 11 3 1 1 7 7777777 7 00000 3 999 3 1 2 000 5 4 0 1 1 5 5 77 5 5 5 0 22222222222 66666666 5 77 5 66 5 88 5 1111111111 5 66 5 0 888 5 3 4 4 11111 4 0 4 0 8 4 00 777 5555555 0 7 4 111 66 66 777777 77777 66 1 66 3 666666 3 77 1 77 1 8888888 11 00000000 0 0 8888888 1 22 5 5 2 77 77 5 0 666666 0 77 0 77 5 888888888 3 00000000 0 22222 88 8 0 1 5 22 000 1 222 7777 444 0 1 1 0 1 6 33 666666 555 5 66 5 44444 5 33 55 0 1 66 222222 5 1 5 1 1 555 000 1 111 66666 6 4444 6 3 111 99 99 6 4444 1 99 4444 333333333333 1 000 6 1 000000000 99 3 7777 6 6 111 8 33 0 33 33 1 22222222 77 55 3 3333 6 99 0000000000 1 2222 1 2222222 777 6666666 0
lowQualScore : . .. . . ... . .. . . . . ....... . ..... . ... . . . ... . . . . . . . .. . . . . ........... ........ . .. . .. . .. . .......... . .. . . ... . . . . ..... . . . . . . .. ... ....... . . . ... .. .. ...... ..... .. . .. . ...... . .. . .. . ....... .. ........ . . ....... . .. . . . .. .. . . ...... . .. . .. . ......... . ........ . ..... .. . . . . .. ... . ... .... ... . . . . . . .. ...... ... . .. . ..... . .. .. . . .. ...... . . . . . ... ... . ... ..... . .... . . ... .. .. . .... . .. .... ............ . ... . . ......... .. . .... . . ... . .. . .. .. . ........ .. .. . .... . .. .......... . .... . ....... ... ....... .
lowQualScore : 0 00 0 6 444 0 00 8 0 0 3 7777777 3 33333 3 000 3 0 0 000 7 3 7 4 3 7 7 99 7 7 7 7 99999999999 11111111 7 99 0 99 0 22 0 9999999999 0 99 0 5 888 0 3 4 4 11111 4 1 4 7 9 4 66 888 9999999 0 3 4 222 11 11 222222 66666 11 4 99 5 444444 0 99 4 99 7 6666666 33 77777777 7 4 6666666 7 00 7 7 7 99 99 0 7 444444 1 99 1 99 7 666666666 9 77777777 7 99999 77 9 3 0 7 44 000 0 000 0000 444 6 4 4 8 0 7 22 444444 777 7 44 7 33333 7 66 77 4 4 33 444444 1 7 7 0 0 999 222 0 777 77777 7 2222 7 5 777 22 22 7 2222 0 22 2222 777777777777 0 222 7 0 222222222 22 2 0000 7 7 777 8 88 2 88 88 0 33333333 99 77 6 1111 7 22 0000000000 4 1111 4 9999999 555 4444444 0
consensus : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAANGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTTTCA-GAA-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGG-CAAAT--C--AT------CGC--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGGCCC-ACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGGTCTACTCTTATCTA-CCGCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTTA-AAA--GG-GAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAA-GGAANCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CNTGT--CTG----GGATCCG-CATACTGCCGTAAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTGTTGTC--GGG--CTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCTTAGGTT-T--TTTA-A-TCTG-CCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
Reference ( family-996 ) : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAANGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTTTCA-GAA-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGG-CAAAT--C--AT------CGC--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGGCCC-ACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGGTCTACTCTTATCTA-CCGCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTTA-AAA--GG-GAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAA-GGAANCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CNTGT--CTG----GGATCCG-CATACTGCCGTAAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTGTTGTC--GGG--CTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCTTAGGTT-T--TTTA-A-TCTG-CCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
gi|1 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCAAAAAGACCTGCACCAAAGGCC-AGGGTC-TGACTCCATCCCTCCAATGT-CCTAAAAG-AGGAAGAGTCGCAA-GGAGG--A-GCTCCATTACTGAGGATTGAT-----GAAGCAACACTCTCGGATAAGGT---AT-GGTCACAGATGAC--GAAGCAGGCCCTTCTCACAC-CCAT-CTTC--AA-GA-A-CGGTAACCGTAAAACCC-----------CTGCA----A--AAT-ACAGACC--TATCTCTCTGT-CCTC--AGTCTGC-TGCAAGAC-ACTT-G----------AA-A-CATAGT--A-CGTAGCCAGGTGAT---G-AAACTTC-TTGTGCAGCACCAA-ATTC-----TTTCAA-ACAAT-CAACAAAGCTT-CACGAA-C--CG---AAGGTCTT-TTG---AAAGTCAGTTGG-CAA-T--A--AC------CGT--G-CCTGATCTTGCT--CCAAGCCTGGATG--TTGGAGAGCAGATTGA------TGC--T-ATAC--TTCTAGA-------CTTTAGCAA--------GGCATTCGACAAGGTTCCCCACCAACGCC-------TAGTTCAGAGGTTATC-CCACTA-GGGCATCATGGG--CACCTTGC--TAAACTGGTT------TAAGAGC--TTCTTGAGTGACCGGCAC--C-A---------GAGAGTCCT--------GATTGA----AAAC-CACTCATCAGAGCCAGCACCAGTGACTTCTGGGGTGCCACAGGGCTCAGTCCTGGGCCCCACCTCTCTTTCTTCTGTACATA---AACGATCTGCTGGAGAGAGCAAAATCAACTACCAGGCTCTTCGCAGACGACAGCCTACT---AT--A-CTGCTAAATCAAGTCAGCGTCAGACTGCAATACCTTACGGGAAGACCTACAGAAGTTAGAGGAGTGGG-GTAATGATTGGCAGATGTCCTCTAACCCCTCTAAATGCGAGGTA------TTT--AAGAA-GTACCCTGAAGCGC-AATCCGATC--TGCC-AAT-----TAC-ACCCTGCATGGG--CACCATTTAGCCACTGTTA-AAA--AGAGAAAGTATCTTAGAGTCACCCTATCGGACA-AGCTCTCTAGGACTGACCACGTGGA----------------AAGTCAACACCAGCCTGAGCAGCCTTCTCCGAA-----GAAATCTAG-CAATTCTACCATGCAACGCAGACT-AAATCCCAGTGCT-TAA--------T--TGTCAGA--CCA-ATCCTCAAGTATGCCTCA----TCTGT--CTGCATGGGATCCG-CATACTTCCGTCAATATAGACAAGCTAGAACGTTTC-T-AGCGTAGGGCGGCTAGG-TTTGTTGTC--GGGA-CTACAAAACTACAAGTACTACAAGCCAAATG--ATCCTTGACCTGGAATGACCTTCCTTACAGCAGCACAGAGAAGAAAGCAAGGAACCTTGTAC-TGATGTACAGGATCATGTACGCACTTGTGGACATACCAGTCGCATGCAGTTTATCTACAT-CATTCTGCAGCATCACTCG-GGACACTCACTCCGATTCGCAATTCCCTTCTGCAGGACTGATGTATATACCGTTATTCCCTCTTCCACTCCGGTATTCGACTA--TGGAACCTGAGCTTTCAGAGCATCTTGTCACTGCAGAGTCCTTCGAGACCTTC------A-AG
gi|10 : tgggccacaacagccatgtcaaaacatcatcgacaatgggagcaacccctttgaagaaactttacagctacatgtacatcaaccgcaaaagatgtgacagtagtggtgatggacactatatgaaaaaggatgccatcggcattagtgacccaaaacttaaaacattccattatagattaacagtttctcaagtgttttttactaaagaagattttcaagaagtccaacaattgacattaaaccttttccagaaatgggaaaccccccaaaaaccctcccatggAAATATTTTGGTGTCA--------GACA-AGCTCACGTGGAACGAGCATTTGGATGCAACT-A-TAATGGAGATCAACAACAGTCT---AAGCTTTCTACGGATCAAAGAATTCAAGATAGGTC-ACCG----ATCCTAACCGAAACACCAGTACGTCAGGACAACATTAGCGT-AGGTCCCATCTAC----GTAGGTCCCAACTACATGTACCTA----GGATCCC-TATGCAGCCAACAATATTGACAACTTAGAAGGCGTC-C-AACAAAGAATGCCAGGG-TTTGTTGTA--GG-----------CGACTAGCAATTTGAGTC-------ATTCGTGACTTATAATGAa
gi|11 : gGGACAAGGT---GT-GGTCCCAAATGACTGGAAGCAGGCCCTTGCCACAC-CCAT-CTTC--AA-AA-A-AGGTGACCGTACAACCCGGGGGGGGGGGCTGCAAGCTA--GCT-ATAGGCC--TATCTCACTGA-CCTC--AATCTGC-TGCAAGAC--CTC-GGGTGCAAGACAAAA-CATAGTACA-CATAGCCAAGCGAT---GAAA-CATC-TTGAGCAGCATGGA-ATAC-----TTTCAG-ACAAA-CAACATGGCTTCAA-GAA-A--CG---AA---TTTCTTGTG-AAAGTCAATTAA-C-AAT--C--AA------CGT--G-CAGGATCTTGCT--GCAAGCCTGGATG--
gi|12 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAG-AAAACCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGA
gi|13 : gtaaatgggcccacagcatctatgtcaaagacataattgacaatgggagcaaccccaaagactttacttccacatcaaaagcaaaatgtgttacagtagtggtgtgacactactgaaaaaggatggcatcgcttacagtgacacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgTTGACACCAAGGGAGT-AGC--CA-AATTGCTAG--AAACCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGACTc
gi|14 : atgggcccacagcatctatgtcaaagacataattgacaagagggagcaaccccaaagactttacttccacatcaaaagcaaattgtttacagtagtggtgtgacactactgaaaaaggatggcaatcgcttatcagtgacaacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgCAAGGT---GT-GGTC--AGATGAATTGGCATAGGAGCTTGTCACAGATCATACTTC--AACGA-AGAGGTGACCGCACAACTT-----------CTGC-------------CAAGCC--TATCTCGCTAA-CCTA--AATATGC-TACAAGAC-ACTT-G----------AACA-CATAGT--A-CATAGCCAGGTGAT---G-AACCATT-TGGAGCAACATGAA-CTAC-----ATTCAG-ACCAA-CAGCATGG-TTTCAGGAA-A--TG---AAGA---CCTTGTG-AAAGTCAGTTAG-C-AAT--C--AT------CGT--G-CAGGATCTTGCT--GCAAGCCTGAAT
gi|15 : TTAACCCCTCTATATGCGAGGTACATGTATT---AAGAA-TAACTCAGAAGTGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGGG-CACCACTTAGCCACTGTTA-AAAA-GG-GAAAGTATCTTGGAGTCATCCTATCGGACA-AACTCTCTTGGAATGACCACGTGGATGTAACC-A-
gi|16 : CTGCAAAGACCCTTAAGAC---------------AGGGCTCTCAAGCACA--AACTAGAGCTTT--TGTCGCTGTTTTAACCT-AGGTT-T--TTTTTA-CCTG-C-ACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAATGCGACAATACTCCAGAGAGAGAGA---GAGCCCTGCACT-CAA-C-TGGAGG-GAGAAGccaaaaa
gi|17 : ACTGCAA-----CT---GAACTCA------A-GCCAGGGCTCTCA--CACA--AACTAGAGCTTTTTCGTCGCTGTTTTAAC--TAGGTT-T--TTT------TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-C-TGGAGGAAAGAAGa
gi|18 : CAGGGCTCTCAGACACA--AACTAGAGCTTTTTCGTCGCTGTTTTAAC--TAGGTT-T--TTT------TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-C-TGGAGGAAAGAAG
gi|19 : gcGACCTTC------AAGGCATGGCTCTCGGGCACA--AACTAGAGCTTT--GGTCACTGTTTTGACCT---GTT-TCTTTTA-AGTCT--TCACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCAAGAAGTGTGACAATGCTCC------AGAGA---GAGCCCT----------C-TGGAAG-AAGa
gi|2 : gTTGACACAGAGGGAGTTAGGTGCATAATTGCTAGAATAAC---TA-GACCTGCAC--A-GGCCCAGGGTCCTGAATCCATCCCTTCAAGATTCCTGAAATTA-----AGTCGCAAAGGAGGCCATACTCCATAACCGAGAATC-ATCTCTTGAAGCATC-CAATTGGACAAGAT---GTTGGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCCGAAA-GAGA-AGGTGACCGTA-AACCCG----------CTGCG----ACCACTGACAGGTCGCTGTC-CTCTGAGCCTCTGAATCTGC-CGCGAGACCACTTTG----------AACG-CATAGT--AACATAGCCAGG---T---G-AA-CATAATTGAGAAGCATGGA-ATTC-----TTTCAG-AAAAAACAACATGGCTTTCA-GAG-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTAG-CAAAT--C--ATT-----CAT--AACAGGACTTTCTT--GCAAGCCTGGGTG--CTGG------GATTGA------TCC--TGACAC--TGCTAAATCCATTACTTTGCCAA--------AGCACTTCACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGATGTC-CTACTA-CGTCATCAGGGG--CACCTTGC--TAAACTGGAT------TGGGAGC--TTCTTGAGTAACCGGCTC--C-A---------GAGAGTCCT--------GATTGA----CAAC-TACTCATCAGAGCCAGCACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGGCTC-ACTGCTCTTTCTTCTGTACATA---AACGATCTGCCGGACAGAATATGATTAATTGCCAGGCTCTTCGCAGATGA--GTCTTCTCTTATCTA-C-GCAAAATCAAGTCAGCGTCAGACTGCAATATCATAGATGAAGATCTACAGAAGTTAGAGGAGTGGG-AAAGTGATTGGCAGATGTCCTTCAACCCCTCTAAATGAGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTTATAAA--GG-GAAAGTATCTTGGAGTCATCCTATTGTATA-AGCACCCTTGGAATGACCACCTGGATGTAACC-ACAAA-GAAAGCCAACGCCAGTCT---CAGCTTTCTCTGGA-----GAAATCTAG-CAAGTCTACGA----ACTCAGACC-AAATCCCAGTGCTACAA---AACACT--TGTCAGG--TCA-ATACTCGATTATGCCTCA----CCTGT--CTG----GAATCCG-CATACTGCCATAAACATAGATAAGCT-------GTC-C-AGCGTAGGGCGGCTAGG-TTTA--------GG----ACAAAACCACAAGCAATGCAAGCCAAATG--ATCCTTGACTTGGAATGGCTTTCCTCACAGCAGTGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCTGCA-GCA---TATTTACACCCACTCTGCAGGATCACTCGTGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTATTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTGACTGCAAAGTCCCTCGGGACCTTC------A-GGCAGGGCTCTTAGGCACA--AACTAAAGCTTT--TGTCGCCGTTTC--CCTCCGGTA-T--TCAA-A-TATG--CACC-TTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATTCTCC------GGAGA---GAACCCTGCACT-C-A-TGTGGAAG-AAGAAG
gi|20 : ATAC--CGTTATTCCTTTATCCCTTCCGGTAATCGCCTAGATGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAATCCCTCGAGACCTTCA-----A-GGCAGGGCTATCGGACACA--AACTAGAGCTTT--CGTCGCCGTTTTCACCT
gi|21 : CC-TTCGAGACCTTCAAGACA--GTCATGGTAAATAA-AGCACTAAGTGCGACAATGCTTC--------AGA---GAGCCCTGCAAT-CAA-T-TGGAGG-AACAAGat
gi|22 : gtTGC-TGATGTACAGGATCATGTACGCACTTGTGAACATACCAGCCGCA-GCA---Taaa
gi|23 : tgtaatgtttaaTAAATGTGACAATGCTCC--------AGA---GAGCCCTGCACTCC-A-T-TGGAAG-ATGAAG
gi|3 : CAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CC-C--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTT-CA-GAA-AAACG---GAGGTCTT---ATGAAA-GTCAGTTGG-CAA-T--C--AC------TGC--G-CAGGATCTTGCT--GCAAACTTGG-TA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAATTGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-AA--------GAGAGTCCT--------GAGTGA----CAAC--ACTCATCAGGGC-AACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGGCCC-ACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCTACTCTTATCTAACCGCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGA-GACCTACAGAATTTAGAGAAGTGGG-AAA-TGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAAATTACTCAGAAGCG--AATCCAATCATTGCC-AAT-----TACCACCTTGCATGGA--TACCAGTTAGTCACTGTTT-TAA-------AAGTA-CTCGGAGTCACCCTATCAGAAACATCACTCTTGGATTGACCACGTGGATGTAACC-A-AAA-GGAATCCAACGCCATCCT---CAGCTTCTTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CATGT--CTG----GGGTCCG-C----------AAACATAGACAAGCTAGAACGTGTCGCAAGCGTAGGGCGACTAGG-TTTTTTATCGTGGG--CTACAAAATCACAGGCAGTGCAAGCCAAATGAAATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGCTTGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACT
gi|4 : ACAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AAACATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTT-CA-GAA-AA-CG---GAGGTCTT---ATGAAA-GTCAGTTGG-CAA-T--C--AC------TGC--G-CAGGATCTTGCT--GCAAACCTTGGTA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAGATGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGGCCC-ACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--GTTCTACTCTTATCTA--CGCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGAAGACCTACAGAATTTAGAGAAGTGGG-AACATGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTTT-A--------AAAGTACCTCGGAGTCACCCTATCAGACA-ATCACTCTTGGATTGACCACGTGGATGTAACCAA-AAA-GGAATCCAACGCCATCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CATGT--CTG----GGGTCCG-C----------AAACATAGACAAGCTAGAACGTGTC-A-AGCGTAGGGCGACTAGGTTTTTTTATCGTGGG--CTACAAAATCACAGGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGC-TGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACTttgt
gi|5 : TTGACACCAAGGGAAT-AGG--CA-AATTGCTAGAAAAAC---TA-GACCTGCAC--AGGGCCCAGGGTCCTGAATCCATCCCTTCAAAGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-AT-CTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CATT-GGACAAGAT---GT-GGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TGTCTCTCTGA-CCTC--GATCTGC-CGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGG---T---G-AA-CATA-TTGAGAAGCATGGA-ATTC-----TTTCAGAAAAAA-CAACATGGC-TTCA-GAAGA--CG---GAGG---TCTTGTG-AAAGTCAGTTAG-C-AAT--C--AT------CAT--A-CAGGATCTTTCT--GCAAGCCTGGGTG--Cttg
gi|6 : ccacaacaactactagtatgtcaaagacataccggtaattgacaatgggagcaaccccaaaaactttacgttcccatcttatcaagaagccaagagtactctccgacagtagtggtgtgatactactgaaaaggatgggaacgctgctacagtgtccaaaactcaaaacattctatataaatgaacgaataaaaattactgccggtttggtcaactagctagaacagcggttgtcagagggttcaaacacacgaccgctaacctgcaaaaaattggtattccttagagtatgaatcacacttccatc-CACC-TGGAGGA-CTTGAACATTC-----TGTCCG-ATAAC-CAACATGGATTCCG-AAA-G--TA---GGGGTCAT---GTGAAAA-TCAACTGGTCATCTGAC--AT------CACTAG-AAGGAACT-GTTAGGCA-GCTTA-ACA--CAGTAGACCAAATCAAATATTCTGC--T-ATA------TAGA-------CTTTTCTAA--------AGCATTTGACAAGGTCCAGCACCAGAGAC-------TTCTTCACAAGT-GCCACCACTATCTG-ATCGGGGAAACACTCTCCAGTAGACTG---------CCAG-GT--TCCTTCAACAAC--ACAC--CCA---------GGAAGACGTATGCGAGGGAGTGA----------AGTTAGGAAGGTCA---CCAGTAACATCAGGTGTACCCCAGGGAACAGTCCTCAGGTC-ACTCCTATTCCTTGTGTACATC---AATGACTTGCCTGAATTTGTAGCTTCAACTACCAGACT
gi|6 : taaacacatcctgcacactaccatcatcactCCTACAAAAT-----GAACTGGACAGGATAGCTGGCTCATGAGCTTCAACACTGACAAATGCGAGATG------CT---GAGGA-TCACCAATAAGCGGAAAACCACACATCTCCAAATACTAGTAC-ACCGTTCATGGAGTTCCC--CTAGCCTC-GTTG-AAAACAG-CGAAGTA-CTTGGgtgaaatttcagatcaccagctagaggactctaggatcctacaaaatgaactggacaggatagctggctcatgagcttcaacactgacaaatgcgagatgctgaggatcaccaataagcggaaaaccacacatctccaaatactagtacaccgttcatggagttcccctagcctcgttgaaaacagcgaagtacttgggacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|7 : taaacacatcctgcacactaccatcatcactcacctggaggacttgaacattctgtccgataaccaacatggattccgaaagtaggggtcatgtgaaaatcaactggtcatctgacatcactagaaggaactgttaggcagcttaacacagtagaccaaatcaaatattctgctatatagacttttctaaagcatttgacaaggtccagcaccagagacttcttcacaagtgccaccactatctgatcggggaaacactctccagtagactgccaggttccttcaacaacacacccaggaagacgtatgcgagggagtgaagttaggaaggtcaccagtaacatcaggtgtaccccagggaacagtcctcaggtcactcctattccttgtgtacatcaatgacttgcctgaatttgtagcttcaactaccagactgtgaaatttcagatcaccagctagaggactctaggatCC-A-AAA---AACCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTATCA----ACCCAGATC-AAATCCCAGTGCTACAA---AACACT--TGTCA--------ATACTCGAGTATGCCTCA----ACTGT--CTG----GGATTCGTNNNNNTGCCGTAAACATAGACAAGCTAGAATGTGTC-C-AACGTAGGGTGGCTAGG-TTTGTTGTT--GGGGACTACAAACCCACAAGAAGTGCAAGCCAAATG--ATCCCTGACCTAGAAGGGCCTTCCTTACAGCAGGGTAGAGAAGAATGCAAGG----TTGTGC-TGATGTACAGGATCATGTACACACTTGTGGACATACCAGTCACA-GCA---TACCTACACCCACTCTGCAGCATCACTCGTGGACACTCACTCCGGCCCGCAATTCCCTTCTGCAGGACTGGTGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTTGACTA--TGGGACC--AGCTTTCAGAGCACCTTGTCACTACAAAGTCCCTCGAGACCTTCCATTTTA-TGCAGGGCTTTAAGGCACATTTACTAGAGCTTT--CGTCGCCGTTTTAACCT---GTTAT--TTTA-A-TCTG--CACT-TTCA----CCGCAATTCACAGTCACTGTAAATAT-AGCACTAAGTGCAACAATGCTCC------AGAGA---GAGCCCTGCACT-C-ATT-TGGAAG-GAGAAgacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|8 : ATTGA------TACAAT-ACATATTTCTAGA-------CTTTAGCAATTTTAAAAGGCATTCGACAAAGTTCCCCACCAACACC-------TAGCTCACAAGTCGTC-CCACAA-CGGCATAGGGGG--CACCTTGC--T-----GGAT------TAAGAAC--TTCTTGAGTGACTGGCAC--C-A---------GAGAACTCT--------GATAGA----CAAC-CACTCAACAGAGCCAGCACCAGTGATTTCTGGAGTGTCACATGGCTCAGTTCTGGGCCC-ACTGCTCGTTCCTCTGTACATAATTAACGATATGCCGGATAGAGCAAAATCAACTACCAGGCTCTTTGCAGACAACAGTCTAT-----TCTA-CTGCAAAATCAA------GTCAGACTGTAATACCTTACAGGAAGACCTACGCAAGTTAGAGGAGTGGA-AACATGATTGGCAGATGTCCTTCAACATCTCTTAATGTGAGGTA------TTTAAAAGAG-TTACTCGGAAGCGG-AATACAATCATTGCC-AAT-----TAC-ACCCTGC------------------------TA-AAA--GG-GAAAGTATCTTGGAGTCTCCCTATCGGACA-AGCTCTCTTGGACTGA
gi|9 : A-CCTC--AGTTCACATGCAAAAT--CTA-G----------AACAACATCGT--A-TGTAGC-AGGCAATTGCG-AC-CATC-TAGA-CAACA-GGA-CCTCACGAATTGCA------A-CAGCATGGCTTTCA-GAA-A--CAACCGAA----TCGTGTGAGA--------GC-CAAAT--CTGATTCCTGACGT--T-CACGACCTTGCC--AAGAGTATGGATGAAC-GAACAGCAAACTGA------C-C--TGATAC--TCCT-GA-------TTTTTCAAA--------GGCCTTT-ATAAGGTTCCTCACAAGCGCCTTCTTTATAA-TCAAAA--TAAC----CTA-TGGTATTCGGAA--CA----GC--T---CTGCATTCATGATAAGGACTTTTCTTGAG--GCCGACACAGC-AGTTTTATTGGAGAG------------GAGTGAAGTCCAACACAGTT-TCCTGTCCA-----------CTCCGGCGTCCCACAAGGAGC-GTCTTAGACCT--CTGCTG-TTCCTCTAT-TATT---AACGACCTACCTGAGGCAGTA
blockSeqs : T TG T A CTA . . A C G T TA A CCATA . CTC . A T CCA T G A G A A GA C G G GGGGGGGGGGG AAGCTA G GC G TG A CA T GGTGCAAGAC A AC A C TGC A C A C ACGAA A A C G G AA ACC GTCTTCT A A T AAA GA TG TCCTGA CTAG AG A AA T ATATTC C AA G AT G TCCATTA GC TTTTAAAA TTCTTTA C AT A T A AA AG A TCATGA TT AG C GTTTTATTG T ATGCGAGG AGTCC AC G T . CT ATT A ACA TCTT ACC A T G C AG CATGTA TAA A GA A ACTAG C GT AC T AT ACAGC T T C T A AC TGG A . TCAAA A . G T GAC AG TC T ACTA A AC . TNNNNNTGCCGT G GCA T G CGTGGGC AA G . T . . T . GA . T CATTTTA TT TT A CTCC A CT AAGTCTT C AGAC A G GAG CATG A
blockSeqs : . . . A CTA . . A A A T A A CAT . CT . T . CCA . G A G . . . . . . G GACC . . . . . A . . . . . T . . A . . . . . T . . A . TTTCT A A . ATC . . T TAA . A . T . G . G . C . AG . . C TT . . A . . A . . . . A T . C T A T . AT . T A TCTT CT A A T . CA . . . G . . . G AG T A AGGG T T . T A AA GA G . . . . . A . . . . . C . . TATGCAGCCAA C C . A CGTGGGC . T . . . . A . . . C AA . TT A TA . . AATATG C . A G GAG CAAT A
blockSeqs : . . . . . . . G A . . G A T . . . . . . . GA . . . . . A . . . . . T . . . . . . . . T . . . . GTCTT A A . AAA . . . TG . G . T . G . . . C . AG . . C AT . . A . . A . . . . . T . C C A T . AT . T G TCTT C A A T . GA . . . G . . . . AG T T GGG T C . A A A GG T . . . . . A . . . . . A . . CATACTGCCAT C C . T TGGGGAC . T . . . . A . . . C AA . . G TA . . AATCTG . . . A . CCAT .
blockSeqs : . . . . . . . . . . G G T . . . . . . . GA . . . . . A . . . . . T . . . . . . . . T . . . . GTCTT A A . AA . . . TG . G . A . G . . . T . TC . . T TC . . G . . A . . . . . A . C C G A . AT . T G . C T G T . CA . . . G . . . . AG T T GGG C C . A T A GG T . . . . . A . . . . . A . . C T A . T AGG . G . . . . T C A . . C CT . . TGAC . . . G . CATT .
blockSeqs : . . . G T . . . . . . . GA . . . . . A . . . . . C . . . . . . . . C . . . . GTCAT A A . AA . . . CG . G . . . A . . . C . AG . . C T . . G . . . . . . . . C . C . . C . CG . A G . A . . . G . . . . . . G . T C . A T A . C . . . . . A . . . . . C . . C . C . G GG . . . . . A . . A CT . . TGAC . . . A . AAC .
blockSeqs : . . . A T . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . ACCT . . . AA . . . CG . A . . . . . . . . TC . . . T . . C . . . . . . . . . . . . . A . G . . . . . . . . . . . A . . . . T C A . . . . . . . . . AAC .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . GTCT . . . AA . . . TA . A . . . . C .
blockSeqs : . . . . . . . . . . . TCG . . . AA . . . TT . .
blockSeqCons : ** GTCT*** G** TCTT C** *** GGG*** A** GG* *** **** **** CATGCGCCG*** CGTGGGC** **** *** CN** AATTGAC*** G******
originalCons : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAANGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTTTCA-GAA-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTGG-CAAAT--C--AT------CGC--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGGCCC-ACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGACGGTCTACTCTTATCTA-CCGCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTTA-AAA--GG-GAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAA-GGAANCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CNTGT--CTG----GGATCCG-CATACTGCCGTAAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTGTTGTC--GGG--CTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCTTAGGTT-T--TTTA-A-TCTG-CCACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
finalCons : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAANGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTTTCA-GAA-A--CG---GAGGTCT---TGTGAAAAGTCAGTTGG-CAAAT--C--AT------CGC--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGGCCC-ACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACGG--GTCTACTCTTATCTAC--GCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTTA-AAAGGG---AAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACCA--AAAGG-AANCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CNTGT--CTG----GGATCCGCATGCGCCG---AAACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTGTTGTCGTGGGC--TACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGCTTT--CGTCGCCGTTTTAACCN--GGTT-T--TTTAATTGAC---CACC-TTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCCG------GAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
Alignments
lowQualScore : 11 1 111 11 3333333 33333 1 111 1 1 222 33333333333 11111111 2222222222 1 1 11111 1 11 1 111 111111 111111 1 1111111 22222222 1111111 111111 222222222 22222222 11111 111 22222 11111 111111 111 11111 11 222222 111 111 11111 1111 111 1111 1111 66666666666666 111 1 11 1111 111 11 11 11 22222222 11 111 333333333 1 1111 1 2222222 111 1111111 1
lowQualScore : 8 11 8 0 666 8 11 3 1 1 7 7777777 7 00000 3 999 3 1 2 000 5 4 0 1 1 5 5 77 5 5 5 0 22222222222 66666666 5 77 5 66 5 88 5 1111111111 5 66 5 0 888 5 3 4 4 11111 4 0 4 0 8 4 00 777 777 7 2 4 111 66 66 777777 77777 66 1 66 3 666666 3 77 1 77 1 8888888 11 00000000 0 0 8888888 1 22 5 5 2 77 77 5 0 666666 0 77 0 77 5 888888888 3 00000000 0 22222 88 8 0 1 5 22 000 1 11111 7777 8 44444 0 1 1 0 1 6 33 666666 555 5 66 5 44444 5 33 55 0 1 66 222222 5 1 5 1 1 555 000 1 111 66666 6 4444 6 3 111 99 99 6 4444 1 99 4444 99999999999999 1 000 6 1 0 6 11 3 7777 6 6 111 8 33 0 33 33 1 22222222 77 55 1 111 6 444444444 1 2222 1 2222222 777 6666666 0
lowQualScore : . .. . . ... . .. . . . . ....... . ..... . ... . . . ... . . . . . . . .. . . . . ........... ........ . .. . .. . .. . .......... . .. . . ... . . . . ..... . . . . . . .. ... ... . . . ... .. .. ...... ..... .. . .. . ...... . .. . .. . ....... .. ........ . . ....... . .. . . . .. .. . . ...... . .. . .. . ......... . ........ . ..... .. . . . . .. ... . ..... .... . ..... . . . . . . .. ...... ... . .. . ..... . .. .. . . .. ...... . . . . . ... ... . ... ..... . .... . . ... .. .. . .... . .. .... .............. . ... . . . . .. . .... . . ... . .. . .. .. . ........ .. .. . ... . ......... . .... . ....... ... ....... .
lowQualScore : 0 00 0 6 444 0 00 8 0 0 3 7777777 3 33333 3 000 3 0 0 000 7 3 7 4 3 7 7 99 7 7 7 7 99999999999 11111111 7 99 0 99 0 22 0 9999999999 0 99 0 5 888 0 3 4 4 11111 4 1 4 7 9 4 66 888 888 3 8 4 222 11 11 222222 66666 11 4 99 5 444444 0 99 4 99 7 6666666 33 77777777 7 4 6666666 7 00 7 7 7 99 99 0 7 444444 1 99 1 99 7 666666666 9 77777777 7 99999 77 9 3 0 7 44 000 0 66666 0000 0 88888 6 4 4 8 0 7 22 444444 777 7 44 7 33333 7 66 77 4 4 33 444444 1 7 7 0 0 999 222 0 777 77777 7 2222 7 5 777 22 22 7 2222 0 22 2222 00000000000000 0 222 7 0 4 4 00 2 0000 7 7 777 8 88 2 88 88 0 33333333 99 77 0 777 7 777777777 4 1111 4 9999999 555 4444444 0
consensus : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAANGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTTTCA-GAA-A--CG---GAGGTCTT---GTGAAAAGTCAGTTGG-CAAAT--C--AT------CGC--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGGCCC-ACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACG--A--GTCTACTCTTAT-CTA--C-GCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTTA-AAA--GG-GAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAA-GGAANCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CNTGT--CTG----GGATCCGCATAC--G-CCGTA-AACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTGTTGTCGTGGGCTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGC--TTTCGTCGCCGTTTTAACCNGG---TT-TTTTAAT-TG-CCA-CCTTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
Reference ( family-996 ) : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCTATA-GACCCGCAC--AAGGCCCAGGGTCCTGANTCCATCCCTTCAANGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-ATGCTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CANTCGGACAAGGT---GT-GGTCCCGGATGACTGGAAACAGTCCCTTGTCACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATCTGC-TGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGGCGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTTTCA-GAA-A--CG---GAGGTCTT---GTGAAAAGTCAGTTGG-CAAAT--C--AT------CGC--G-CAGGATCTTGCT--GCAAGCCTGGATG--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GGCATTTGACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGTTGTC-CCACTA-CGGCATCGGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAGCACCAGTGACCTCTGGAGTGCCACAGGGNTCAGTCCTGGGCCC-ACTGCTNTTTCTTCTGTACATA---AACGATCTGCCGGAGAGAGCAAANTCAACTACCAGGCTCTTCGCAGACG--G--GTCTACTCTTAT-CTA--C-GCAAAATCAAGTCAGCGTCAGACTGCAATACCATACAGGAAGACCTACAGAANTTAGAGGAGTGGG-AAAATGATTGGCAGATGTCCTTCAACCCCTCTAAATGCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGCCACTGTTA-AAA--GG-GAAAGTATCTTGGAGTCACCCTATCGGACA-AGCNCTCTTGGANTGACCACGTGGATGTAACC-A-AAA-GGAANCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGCTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CNTGT--CTG----GGATCCGCATGC--G-CCG-A-AACATAGACAAGCTAGAACGTGTC-C-AGCGTAGGGCGGCTAGG-TTTGTTGTCGTGGGCTACAAAACCACAAGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGACCTTCCTTACAGCAGCGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCCGCA-GCA---TATCTACATCCACTCTGCAGCATCACTCGNGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAGTCCCTCGAGACCTTC------A-GGCAGGGCTCTCAGGCACA--AACTAGAGC--TTTCGTCGCCGTTTTAACCNGG---TT-TTTTAAT-TGACCA-CCTTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATGCTCC------GGAGA---GAGCCCTGCACT-C-A-C-TGGAGG-AAGAAG
gi|1 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAGAAAAACCAAAAAGACCTGCACCAAAGGCC-AGGGTC-TGACTCCATCCCTCCAATGT-CCTAAAAG-AGGAAGAGTCGCAA-GGAGG--A-GCTCCATTACTGAGGATTGAT-----GAAGCAACACTCTCGGATAAGGT---AT-GGTCACAGATGAC--GAAGCAGGCCCTTCTCACAC-CCAT-CTTC--AA-GA-A-CGGTAACCGTAAAACCC-----------CTGCA----A--AAT-ACAGACC--TATCTCTCTGT-CCTC--AGTCTGC-TGCAAGAC-ACTT-G----------AA-A-CATAGT--A-CGTAGCCAGGTGAT---G-AAACTTC-TTGTGCAGCACCAA-ATTC-----TTTCAA-ACAAT-CAACAAAGCTT-CACGAA-C--CG---AAGGTCTT---TTGAAA-GTCAGTTGG-CAA-T--A--AC------CGT--G-CCTGATCTTGCT--CCAAGCCTGGATG--TTGGAGAGCAGATTGA------TGC--T-ATAC--TTCTAGA-------CTTTAGCAA--------GGCATTCGACAAGGTTCCCCACCAACGCC-------TAGTTCAGAGGTTATC-CCACTA-GGGCATCATGGG--CACCTTGC--TAAACTGGTT------TAAGAGC--TTCTTGAGTGACCGGCAC--C-A---------GAGAGTCCT--------GATTGA----AAAC-CACTCATCAGAGCCAGCACCAGTGACTTCTGGGGTGCCACAGGGCTCAGTCCTGGGCCCCACCTCTCTTTCTTCTGTACATA---AACGATCTGCTGGAGAGAGCAAAATCAACTACCAGGCTCTTCGCAGACG--ACAGCCTACT---ATACT-----GCTAAATCAAGTCAGCGTCAGACTGCAATACCTTACGGGAAGACCTACAGAAGTTAGAGGAGTGGG-GTAATGATTGGCAGATGTCCTCTAACCCCTCTAAATGCGAGGTA------TTT--AAGAA-GTACCCTGAAGCGC-AATCCGATC--TGCC-AAT-----TAC-ACCCTGCATGGG--CACCATTTAGCCACTGTTA-AAA--AGAGAAAGTATCTTAGAGTCACCCTATCGGACA-AGCTCTCTAGGACTGACCACGTGGA----------------AAGTCAACACCAGCCTGAGCAGCCTTCTCCGAA-----GAAATCTAG-CAATTCTACCATGCAACGCAGACT-AAATCCCAGTGCT-TAA--------T--TGTCAGA--CCA-ATCCTCAAGTATGCCTCA----TCTGT--CTGCATGGGATCCGCATAC--TTCCGTC-AATATAGACAAGCTAGAACGTTTC-T-AGCGTAGGGCGGCTAGG-TTTGTTGTCG-GGACTACAAAACTACAAGTACTACAAGCCAAATG--ATCCTTGACCTGGAATGACCTTCCTTACAGCAGCACAGAGAAGAAAGCAAGGAACCTTGTAC-TGATGTACAGGATCATGTACGCACTTGTGGACATACCAGTCGCATGCAGTTTATCTACAT-CATTCTGCAGCATCACTCG-GGACACTCACTCCGATTCGCAATTCCCTTCTGCAGGACTGATGTATATACCGTTATTCCCTCTTCCACTCCGGTATTCGACTA--TGGAACCTGAGCTTTCAGAGCATCTTGTCACTGCAGAGTCCTTCGAGACCTTC------A-AG
gi|10 : tgggccacaacagccatgtcaaaacatcatcgacaatgggagcaacccctttgaagaaactttacagctacatgtacatcaaccgcaaaagatgtgacagtagtggtgatggacactatatgaaaaaggatgccatcggcattagtgacccaaaacttaaaacattccattatagattaacagtttctcaagtgttttttactaaagaagattttcaagaagtccaacaattgacattaaaccttttccagaaatgggaaaccccccaaaaaccctcccatggAAATATTTTGGTGTCA--------GACA-AGCTCACGTGGAACGAGCATTTGGATGCAACT-A-TAATGGAGATCAACAACAGTCT---AAGCTTTCTACGGATCAAAGAATTCAAGATAGGTC-ACCG----ATCCTAACCGAAACACCAGTACGTCAGGACAACATTAGCGT-AGGTCCCATCTAC----GTAGGTCCCAACTACATGTACCTA----GGATCCCTATGCA-G-CCA-ACAATATTGACAACTTAGAAGGCGTC-C-AACAAAGAATGCCAGGG-TTTGTTGTa
gi|11 : gGGACAAGGT---GT-GGTCCCAAATGACTGGAAGCAGGCCCTTGCCACAC-CCAT-CTTC--AA-AA-A-AGGTGACCGTACAACCCGGGGGGGGGGGCTGCAAGCTA--GCT-ATAGGCC--TATCTCACTGA-CCTC--AATCTGC-TGCAAGAC--CTC-GGGTGCAAGACAAAA-CATAGTACA-CATAGCCAAGCGAT---GAAA-CATC-TTGAGCAGCATGGA-ATAC-----TTTCAG-ACAAA-CAACATGGCTTCAA-GAA-A--CG---AATTTCTT---GTG-AAAGTCAATTAA-C-AAT--C--AA------CGT--G-CAGGATCTTGCT--GCAAGCCTGGATG--aggcgactagcaatttgagtcattcgtgacttataatga
gi|12 : TTGACACCAAGGGAGT-AGC--CA-AATTGCTAG-AAAACCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGA
gi|13 : gtaaatgggcccacagcatctatgtcaaagacataattgacaatgggagcaaccccaaagactttacttccacatcaaaagcaaaatgtgttacagtagtggtgtgacactactgaaaaaggatggcatcgcttacagtgacacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgTTGACACCAAGGGAGT-AGC--CA-AATTGCTAG--AAACCTATA-GACTCGCAC--AAGGCCCAGTGTCCTGACTc
gi|14 : atgggcccacagcatctatgtcaaagacataattgacaagagggagcaaccccaaagactttacttccacatcaaaagcaaattgtttacagtagtggtgtgacactactgaaaaaggatggcaatcgcttatcagtgacaacaaaacatctattatgaacgaatagttctgcagtgttttcactaaagaaaatttgtcaagatgaccaactttcatgCAAGGT---GT-GGTC--AGATGAATTGGCATAGGAGCTTGTCACAGATCATACTTC--AACGA-AGAGGTGACCGCACAACTT-----------CTGC-------------CAAGCC--TATCTCGCTAA-CCTA--AATATGC-TACAAGAC-ACTT-G----------AACA-CATAGT--A-CATAGCCAGGTGAT---G-AACCATT-TGGAGCAACATGAA-CTAC-----ATTCAG-ACCAA-CAGCATGG-TTTCAGGAA-A--TG---AAGACCTT---GTG-AAAGTCAGTTAG-C-AAT--C--AT------CGT--G-CAGGATCTTGCT--GCAAGCCTGAAT
gi|15 : TTAACCCCTCTATATGCGAGGTACATGTATT---AAGAA-TAACTCAGAAGTGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGGG-CACCACTTAGCCACTGTTA-AAAA-GG-GAAAGTATCTTGGAGTCATCCTATCGGACA-AACTCTCTTGGAATGACCACGTGGATGTAACC-A-
gi|16 : CTGCAAAGACCCTTAAGAC---------------AGGGCTCTCAAGCACA--AACTAGAGC--TTTTGTCGCTGTTTTAACCTAGGTTTT-TTTTACC-TG--CA-CCTTCA----CTGCAAGACACAGTCACTGTAAATAT-AGCACTAAATGCGACAATACTCCAGAGAGAGAGA---GAGCCCTGCACT-CAA-C-TGGAGG-GAGAAGccaaaaa
gi|17 : ACTGCAA-----CT---GAACTCA------A-GCCAGGGCTCTCA--CACA--AACTAGAGCTTTTTCGTCGCTGTTTTAACTAGG---TT-TTT---T-TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-C-TGGAGGAAAGAAGa
gi|18 : CAGGGCTCTCAGACACA--AACTAGAGCTTTTTCGTCGCTGTTTTAACTAGG---TT-TTT---T-TGACCACCCTTCA----CTGCAAGACACAGTCACTGTAAATATAAGCACTAAATGCGACAATACTCA------GGAGAGAGGAGCCCTGCACT-A-A-C-TGGAGGAAAGAAG
gi|19 : gcGACCTTC------AAGGCATGGCTCTCGGGCACA--AACTAGAGC--TTTGGTCACTGTTTTGACCTGT---TTCTTTTAAG-TCTTCA-CCTTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCAAGAAGTGTGACAATGCTCC------AGAGA---GAGCCCT----------C-TGGAAG-AAGa
gi|2 : gTTGACACAGAGGGAGTTAGGTGCATAATTGCTAGAATAAC---TA-GACCTGCAC--A-GGCCCAGGGTCCTGAATCCATCCCTTCAAGATTCCTGAAATTA-----AGTCGCAAAGGAGGCCATACTCCATAACCGAGAATC-ATCTCTTGAAGCATC-CAATTGGACAAGAT---GTTGGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCCGAAA-GAGA-AGGTGACCGTA-AACCCG----------CTGCG----ACCACTGACAGGTCGCTGTC-CTCTGAGCCTCTGAATCTGC-CGCGAGACCACTTTG----------AACG-CATAGT--AACATAGCCAGG---T---G-AA-CATAATTGAGAAGCATGGA-ATTC-----TTTCAG-AAAAAACAACATGGCTTTCA-GAG-A--CG---GAGGTCTTCTTGTGAAAAGTCAGTTAG-CAAAT--C--ATT-----CAT--AACAGGACTTTCTT--GCAAGCCTGGGTG--CTGG------GATTGA------TCC--TGACAC--TGCTAAATCCATTACTTTGCCAA--------AGCACTTCACAAGGTTCCCCACCAACGCC-------TAGCTCAGAAGATGTC-CTACTA-CGTCATCAGGGG--CACCTTGC--TAAACTGGAT------TGGGAGC--TTCTTGAGTAACCGGCTC--C-A---------GAGAGTCCT--------GATTGA----CAAC-TACTCATCAGAGCCAGCACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGGCTC-ACTGCTCTTTCTTCTGTACATA---AACGATCTGCCGGACAGAATATGATTAATTGCCAGGCTCTTCGCAGATG--A--GTCTTCTCTTAT-CTA--C-GCAAAATCAAGTCAGCGTCAGACTGCAATATCATAGATGAAGATCTACAGAAGTTAGAGGAGTGGG-AAAGTGATTGGCAGATGTCCTTCAACCCCTCTAAATGAGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTTATAAA--GG-GAAAGTATCTTGGAGTCATCCTATTGTATA-AGCACCCTTGGAATGACCACCTGGATGTAACC-ACAAA-GAAAGCCAACGCCAGTCT---CAGCTTTCTCTGGA-----GAAATCTAG-CAAGTCTACGA----ACTCAGACC-AAATCCCAGTGCTACAA---AACACT--TGTCAGG--TCA-ATACTCGATTATGCCTCA----CCTGT--CTG----GAATCCGCATACT-G-CCATA-AACATAGATAAGC-------TGTC-C-AGCGTAGGGCGGCTAGG-TTTA-------GG---ACAAAACCACAAGCAATGCAAGCCAAATG--ATCCTTGACTTGGAATGGCTTTCCTCACAGCAGTGCAGAGAAGAAAGCAAGG----TTGTGC-TGATGTACAGGATCATGTACGCACTTGTGGGCATACCAGCTGCA-GCA---TATTTACACCCACTCTGCAGGATCACTCGTGGACACTCACTCCGGCTCGCAATTCCCTTCTGCAGGACTGATGTATAT--CGTTATTCCTTATTCCCCTCCGGTATTCGACTA--TGGAACC--AGCTTTCAGAGCACCTTGTGACTGCAAAGTCCCTCGGGACCTTC------A-GGCAGGGCTCTTAGGCACA--AACTAAAGC--TTTTGTCGCCGTTTCCCTCCGG---TA-TTCAAATATG--CA-CCTTCA----CTGCAAGGCACAGTCACTGTAAATAT-AGCACTAAGTGCGACAATTCTCC------GGAGA---GAACCCTGCACT-C-A-TGTGGAAG-AAGAAG
gi|20 : ATAC--CGTTATTCCTTTATCCCTTCCGGTAATCGCCTAGATGGAACC--AGCTTTCAGAGCACCTTGTCACTGCAAAATCCCTCGAGACCTTCA-----A-GGCAGGGCTATCGGACACA--AACTAGAGC--TTTCGTCGCCGTTTTCACC
gi|21 : -CCTTCGAGACCTTCAAGACA--GTCATGGTAAATAA-AGCACTAAGTGCGACAATGCTTC--------AGA---GAGCCCTGCAAT-CAA-T-TGGAGG-AACAAGtat
gi|22 : gtTGC-TGATGTACAGGATCATGTACGCACTTGTGAACATACCAGCCGCA-GCA---Taaa
gi|23 : tgtaatgtttaaTAAATGTGACAATGCTCC--------AGA---GAGCCCTGCACTCC-A-T-TGGAAG-ATGAAG
gi|3 : CAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CC-C--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AA-CATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTT-CA-GAA-AAACG---GAGGTCTT---ATGAAA-GTCAGTTGG-CAA-T--C--AC------TGC--G-CAGGATCTTGCT--GCAAACTTGG-TA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAATTGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-AA--------GAGAGTCCT--------GAGTGA----CAAC--ACTCATCAGGGC-AACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGGCCC-ACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--G--TTCTACTCTTAT-CTAACC-GCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGA-GACCTACAGAATTTAGAGAAGTGGG-AAA-TGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAAATTACTCAGAAGCG--AATCCAATCATTGCC-AAT-----TACCACCTTGCATGGA--TACCAGTTAGTCACTGTTT-TAA-------AAGTA-CTCGGAGTCACCCTATCAGAAACATCACTCTTGGATTGACCACGTGGATGTAACC-A-AAA-GGAATCCAACGCCATCCT---CAGCTTCTTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CATGT--CTG----GGGTCCGC------------A-AACATAGACAAGCTAGAACGTGTCGCAAGCGTAGGGCGACTAGG-TTTTTTATCGTGGGCTACAAAATCACAGGCAGTGCAAGCCAAATGAAATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGCTTGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACT
gi|4 : ACAAGGCCCAGT-G-TCCTGACTGACTGTAAACAGTCCCTTGTTACAT-CCAT-ATCC--AA-GA-A-AGGTGACTGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TATCTCTCTGA-CCTC--AATTTGC-TGTGCGGC-ATTT-G----------AACG-CATATT--A-CATAGCCAGGTGAT---G-AAACATC-TTGAGCAGCATGGA-ATTC-----TTTCAG-ACAAA-CAACATGGCTT-CA-GAA-AA-CG---GAGGTCTT---ATGAAA-GTCAGTTGG-CAA-T--C--AC------TGC--G-CAGGATCTTGCT--GCAAACCTTGGTA--CTGGAGAGCAGATTGA------TGC--T-ACAC--TCCTAGA-------CTTTAGCAA--------GACATTTGACAAGGTTCCTCACCAACGCC-------TAGCTCAGAAGATGTC-CCACTA-CGGCGTCAGGGG--CACCTTGC--TAAACTGGAT------TAAGAGC--TTCTTGAGTAACCGGCAC--C-A---------GAGAGTCCT--------GAGTGA----CAAC-CACTCATCAGGGCCAACACCAGTGACCTCTGGAGTGCCATAGGGTTCAATCCTGGGCCC-ACTGCTATTTCTTCTGTACATA---AACGATCTCCCGGAGAGAGCAAATTTAATTACCAGGCTCTTCGCAGACG--G--TTCTACTCTTAT-CTA--C-GCAAAATCACGTCAGCGTCAGACTGCAATACCATACAAGAAGACCTACAGAATTTAGAGAAGTGGG-AACATGATTGGCAGATGTCCTTCAACCCCTCTAAATTCGAGGTA------TT---AAGAA-TTACTCAGAAGCGG-AATCCAATCATTGCC-AAT-----TAC-ACCCTGCATGGA--TACCAGTTAGTCACTGTTT-A--------AAAGTACCTCGGAGTCACCCTATCAGACA-ATCACTCTTGGATTGACCACGTGGATGTAACCAA-AAA-GGAATCCAACGCCATCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTACCA----ACCCAGACC-AAATCCCAGTGTTACAA---AACATT--TGTCAGG--CCA-ATACTCGAGTATGCCTCA----CATGT--CTG----GGGTCCGC------------A-AACATAGACAAGCTAGAACGTGTC-A-AGCGTAGGGCGACTAGGTTTTTTTATCGTGGGCTACAAAATCACAGGCAGTGCAAGCCAAATG--ATCCTTGACTTGGAATGAGCTTCCTTGCAGCAGCTCAGAGAAGAAAACAAGG----TTGTGC-TGATTTACAGGATCATGTACGCACTTGTGGGCATACCAGCCACA-ACA---TATCCACATCCACTCTGCAGCACCACTCGAGGACACTCACTttgt
gi|5 : TTGACACCAAGGGAAT-AGG--CA-AATTGCTAGAAAAAC---TA-GACCTGCAC--AGGGCCCAGGGTCCTGAATCCATCCCTTCAAAGTTCCTGAAAT-A-----AGTCGCAAAGGAGGC-AT-CTCCATAACCGAGAATC-ATCT-TTGAAGCATC-CATT-GGACAAGAT---GT-GGTCCCAGATGACTGGAAACAGTCCCTTGTTACAC-CCAT-CTCC--AA-GA-A-AGGTGACCGTACAACCC-----------CTGCG----A--ACT-ACAGGCC--TGTCTCTCTGA-CCTC--GATCTGC-CGCGAGAC-ACTT-G----------AACG-CATAGT--A-CATAGCCAGG---T---G-AA-CATA-TTGAGAAGCATGGA-ATTC-----TTTCAGAAAAAA-CAACATGGC-TTCA-GAAGA--CG---GAGGTCTT---GTG-AAAGTCAGTTAG-C-AAT--C--AT------CAT--A-CAGGATCTTTCT--GCAAGCCTGGGTG--Cttg
gi|6 : ccacaacaactactagtatgtcaaagacataccggtaattgacaatgggagcaaccccaaaaactttacgttcccatcttatcaagaagccaagagtactctccgacagtagtggtgtgatactactgaaaaggatgggaacgctgctacagtgtccaaaactcaaaacattctatataaatgaacgaataaaaattactgccggtttggtcaactagctagaacagcggttgtcagagggttcaaacacacgaccgctaacctgcaaaaaattggtattccttagagtatgaatcacacttccatc-CACC-TGGAGGA-CTTGAACATTC-----TGTCCG-ATAAC-CAACATGGATTCCG-AAA-G--TA---GGGGTCAT---GTGAAAA-TCAACTGGTCATCTGAC--AT------CACTAG-AAGGAACT-GTTAGGCA-GCTTA-ACA--CAGTAGACCAAATCAAATATTCTGC--T-ATA------TAGA-------CTTTTCTAA--------AGCATTTGACAAGGTCCAGCACCAGAGAC-------TTCTTCACAAGT-GCCACCACTATCTG-ATCGGGGAAACACTCTCCAGTAGACTG---------CCAG-GT--TCCTTCAACAAC--ACAC--CCA---------GGAAGACGTATGCGAGGGAGTGA----------AGTTAGGAAGGTCA---CCAGTAACATCAGGTGTACCCCAGGGAACAGTCCTCAGGTC-ACTCCTATTCCTTGTGTACATC---AATGACTTGCCTGAATTTGTAGCTTCAACTACCAGACT
gi|6 : taaacacatcctgcacactaccatcatcactCCTACAAAAT-----GAACTGGACAGGATAGCTGGCTCATGAGCTTCAACACTGACAAATGCGAGATG------CT---GAGGA-TCACCAATAAGCGGAAAACCACACATCTCCAAATACTAGTAC-ACCGTTCATGGAGTTCCC--CTAGCCTC-GTTG-AAAACAG-CGAAGTA-CTTGGgtgaaatttcagatcaccagctagaggactctaggatcctacaaaatgaactggacaggatagctggctcatgagcttcaacactgacaaatgcgagatgctgaggatcaccaataagcggaaaaccacacatctccaaatactagtacaccgttcatggagttcccctagcctcgttgaaaacagcgaagtacttgggacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|7 : taaacacatcctgcacactaccatcatcactcacctggaggacttgaacattctgtccgataaccaacatggattccgaaagtaggggtcatgtgaaaatcaactggtcatctgacatcactagaaggaactgttaggcagcttaacacagtagaccaaatcaaatattctgctatatagacttttctaaagcatttgacaaggtccagcaccagagacttcttcacaagtgccaccactatctgatcggggaaacactctccagtagactgccaggttccttcaacaacacacccaggaagacgtatgcgagggagtgaagttaggaaggtcaccagtaacatcaggtgtaccccagggaacagtcctcaggtcactcctattccttgtgtacatcaatgacttgcctgaatttgtagcttcaactaccagactgtgaaatttcagatcaccagctagaggactctaggatCC-A-AAA---AACCCAACGCCAGCCT---CAGCTTTCTCCGGA-----GAAATCTAG-CAAGTCTATCA----ACCCAGATC-AAATCCCAGTGCTACAA---AACACT--TGTCA--------ATACTCGAGTATGCCTCA----ACTGT--CTG----GGATTCGTNNNNNTG-CCGTA-AACATAGACAAGCTAGAATGTGTC-C-AACGTAGGGTGGCTAGG-TTTGTTGTTGGGGACTACAAACCCACAAGAAGTGCAAGCCAAATG--ATCCCTGACCTAGAAGGGCCTTCCTTACAGCAGGGTAGAGAAGAATGCAAGG----TTGTGC-TGATGTACAGGATCATGTACACACTTGTGGACATACCAGTCACA-GCA---TACCTACACCCACTCTGCAGCATCACTCGTGGACACTCACTCCGGCCCGCAATTCCCTTCTGCAGGACTGGTGTATAT--CGTTATTCCTTCTTCCCCTCCGGTATTTGACTA--TGGGACC--AGCTTTCAGAGCACCTTGTCACTACAAAGTCCCTCGAGACCTTCCATTTTA-TGCAGGGCTTTAAGGCACATTTACTAGAGC--TTTCGTCGCCGTTTTAACCTGT---TA-TTTTAATCTG--CA-CTTTCA----CCGCAATTCACAGTCACTGTAAATAT-AGCACTAAGTGCAACAATGCTCC------AGAGA---GAGCCCTGCACT-C-ATT-TGGAAG-GAGAAgacttaacatcagtaccaatcagtttaggattctatcacgcagagggagaccaa
gi|8 : ATTGA------TACAAT-ACATATTTCTAGA-------CTTTAGCAATTTTAAAAGGCATTCGACAAAGTTCCCCACCAACACC-------TAGCTCACAAGTCGTC-CCACAA-CGGCATAGGGGG--CACCTTGC--T-----GGAT------TAAGAAC--TTCTTGAGTGACTGGCAC--C-A---------GAGAACTCT--------GATAGA----CAAC-CACTCAACAGAGCCAGCACCAGTGATTTCTGGAGTGTCACATGGCTCAGTTCTGGGCCC-ACTGCTCGTTCCTCTGTACATAATTAACGATATGCCGGATAGAGCAAAATCAACTACCAGGCTCTTTGCAGACAACA--GTCTAT-----T-CTA--CTGCAAAATCAA------GTCAGACTGTAATACCTTACAGGAAGACCTACGCAAGTTAGAGGAGTGGA-AACATGATTGGCAGATGTCCTTCAACATCTCTTAATGTGAGGTA------TTTAAAAGAG-TTACTCGGAAGCGG-AATACAATCATTGCC-AAT-----TAC-ACCCTGC------------------------TA-AAA--GG-GAAAGTATCTTGGAGTCTCCCTATCGGACA-AGCTCTCTTGGACTGA
gi|9 : A-CCTC--AGTTCACATGCAAAAT--CTA-G----------AACAACATCGT--A-TGTAGC-AGGCAATTGCG-AC-CATC-TAGA-CAACA-GGA-CCTCACGAATTGCA------A-CAGCATGGCTTTCA-GAA-A--CAACCGA-ATCGT---GTGAGA--------GC-CAAAT--CTGATTCCTGACGT--T-CACGACCTTGCC--AAGAGTATGGATGAAC-GAACAGCAAACTGA------C-C--TGATAC--TCCT-GA-------TTTTTCAAA--------GGCCTTT-ATAAGGTTCCTCACAAGCGCCTTCTTTATAA-TCAAAA--TAAC----CTA-TGGTATTCGGAA--CA----GC--T---CTGCATTCATGATAAGGACTTTTCTTGAG--GCCGACACAGC-AGTTTTATTGGAGAG------------GAGTGAAGTCCAACACAGTT-TCCTGTCCA-----------CTCCGGCGTCCCACAAGGAGC-GTCTTAGACCT--CTGCTG-TTCCTCTAT-TATT---AACGACCTACCTGAGGCAGTA