lowQualScore : 1111111111111111111111111111111 111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1 2222 3333333333333 11 4444444 9999999 11 3333 111111 33 3333333333333333333333333333333 1 11111111 5555555 7777777777777777777777 1 222 11111 11 222222 444444444444444444444444444444444444444444 1 22222 88888888888888888888888888888888888888888888888888888888888888888888 2222222 33333 88888888888888888888888 111
lowQualScore : 8 999 3 0 0 9999 3 5555555555555 2 33 2 0000000 5 888 5 4 3333333 4 88 33 66 0000 111111 55 3 6 3333333333333333333333333333333 6 2 6 88888888 66 5 0 1111111 3 8 1111111111111111111111 66 3 222 2 8 77777 8 0 11 11 333333 555555555555555555555555555555555555555555 3 99 6 6 3 5 00000 6 22222222222222222222222222222222222222222222222222222222222222222222 3 3 1 6666666 0 55555 1 8 3 22222222222222222222222 3 777 2
lowQualScore : . ... . . . .... . ............. . .. . ....... . ... . . ....... . .. .. .. .... ...... .. . . ............................... . . . ........ .. . . ....... . . ...................... .. . ... . . ..... . . .. .. ...... .......................................... . .. . . . . ..... . .................................................................... . . . ....... . ..... . . . ....................... . ... .
lowQualScore : 3 333 2 0 2 8888 2 6666666666666 3 00 7 2222222 0 888 0 4 7777777 4 99 44 11 6666 999999 00 2 3 3333333333333333333333333333333 0 7 7 88888888 88 6 6 4444444 2 0 0000000000000000000000 66 2 000 8 0 66666 0 8 22 00 000000 222222222222222222222222222222222222222222 2 22 7 7 5 0 00000 4 66666666666666666666666666666666666666666666666666666666666666666666 2 0 4 0000000 6 33333 4 2 5 55555555555555555555555 5 000 8
consensus : NNAGTCTACACTCGGTTA--TAAACAACAA-TTGA-NCAGGGAAAATC------------ATTTTGTAACAA-TAATTCAATTAT--TATGCGGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAGAT-TTAAAAAA--AT-G-TTTCAAGG-TAGAAATTACAAGTTTATTCAAAACTCGAA--C-----TAGTTGAA---TGCTA---CCGCATCGCTGTCATTTCTGAAA-G--AA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTGAAA------CA-----TNC-----ATTTAATTTCGAGTGTTT--TAAAAGAGA-TCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTCAAAN-CA-GG-AGGCCT-ATAGACTAGTTCT---TGAGACTTCC-TTCGAACAA--T-CGTGAA-TGTCGGCATTTACACGTAA-----TTNAGTCTCTTGTAAAAA----A-TCTCTTAAACA-TTTCAC-GAC--------T----------------TNTT----------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAA-GATGAAACCTAACCGACATTGTTTACGTATGACGTCAGCTT--ACGTATGACGT-----TTGCTCCTCTCGGGAG-TTTTTGTTCAA
Reference ( gi|1 ) : ATAGTCTTCACTCGGTTACTTAAACAACAA-TTGA-ACAGGGAAAATC------------ATTTTGTAACAG-TAATTCAGTTATA-TATGCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTATGCATGCATCTGCAAT-AAGTATCCTAGAT-TTAAAAAA--AT-A-TTTCAAGG-TACAAATGCCAAGTTTATTCAAAACTCGAA--TA----TAGTTGAA-GCTCCTAGATCTATATCACAGTCATTTCTGAAA-G--AA-ATTTTAATGACAACGTTACAAATGTCAGAGAAACCAATGGTCCAAAATTAAGG-AATCCACTGAAA------CA-----TCG-----GTTTAATTTCGAGTGTTT--AAAAGGAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTCAAAA-CACGGTAGGCCT-ATAGACTAGTT-TAAATGAGACTTCC-TTCGAACAA--T-CGTGAA-TATCGGCATTTACAGGTAA-----TTCAGTCTCTTGTAAAAAAAATAATCTCTTAAACA-TTTCAC------------T----------------TGCT----------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAA-ACTTAAACCTAACCAACATTGTTTACGTATGACGTCAGCTCAAAC-TATGACGTAAC--TTGCTTCTCTCAGGCG-TTTTCGTTCAA
gi|10 : AGTCTACACTCGGGT---TAAACAACAA-TTTATAT-GGGAAAATC------------ATTTTATAATAA-TAATTCAGT-----TATGCTGAATGG-TAGA---TG-GATATTTAAAGTGAGC--TGC---CATCTGCAAT-AAGTATCCTGAAT-TTAAAAAA--AT-AGTTTCATCG-TAGAAATTACAAGTTTAATCAAAACTCGAA---------ACTAGAA----CCTA---CTGCATCGCTGTCATTT
gi|8 : gGTCTATATTCGGTTA----AACAATAAATTAT-AC-GGGAAA-----------------TTTA-AAC---TAAT---GTTGTAATATGCGAAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAGA--TTAATAAA--AA-G-TTTCAAGC-TAGAAATTACAAGTGTATTCAAAGCTTAAAACTAGGCCTAGTTGAA---TACT--GTGCACATCGCTGTTATTTCTGAAAGG--AA-ATGTTAATGGTAACGTTACAAATGT
gi|16 : GTCTTCACTCGGTTACTTA---AACAA-TTGA-TCAGGGAAA
gi|12 : cataatggcAAACAACAA-CTGA-TGATGGAAAATTGTAACTTCAGTTATTTTGTAACAA-TAATTCATTTAT----T-CGGAATGA-CAAA---TG-AATA-TTAAAGTGCGCTAC-----CATCCGCAAT-ACGTATTACAGA--TTAAAAGA--A--G-TTTCAAGA-TA
gi|11 : cggccATC------------TTTTTGTATCAA-TAAATCAATTAT-----GCAGGATAGCTGCAATCTG-AATA-TTAAAGTGATTTAC-----CATCTGCAAT-AAGTATCACAGAT-AAAAACAA--ATAA-TTCCAAGa
gi|7 : ttcggggttaatctcacaatatcggaaaaacatcataattattttTT------------ATTTTGTAACAA-TAATTCAATTAT-----GGAGAATGT-TAGA---TG-AATA-TTAAAGTAAGCTAC-----CATCTGCAAT-AAGTATCACATAC-ATAAAAAATGAT---TTTCAAGG-CAGAA
gi|14 : atattcggttaaacaaattatcaaacaaactttttacttgat------------ATTTTGCAACAAATAATTCAATT----TACGCAGAATGG-TAGG---TGAAATA-TT--AGTGAGCTA------CAACTGCAGTAAAATATCACAGAT-T--AAAAA--AT----------G-TACAAATtttacacggtttacactgcattgttgtcatttctgaaaggaaatgttgatggtgacgtcacaaatgtcagcgacatttggtccagat
gi|2 : aatcatacaaatttatTTTTGCATCAA-TAATTCAATTAT-----GCAGAATGG-TGGA---GA-AATA-CTATAGTAAATT-----TTCCTCTGCAAT-CATTTTCATGGAT-ATAAACAA--AT-AGTTTCAAAAATAGAAATTACAAGTTTATTCCAAATTCTAA--C-----TAGTTGAATGCTGC---------ATCGCTGTCATTTCTAAAA-A--TC-ATGTTTATGGTGACGTTAGAAATACCAGAAAAATT--TGATTCAAGATTAGAG-AATCCACTAAAA------TA-----T-----------ACATGCGAGTGTTT--TAAAAGAGA-CATCCGCTA----GTTTTTCTTG-CCCCAACATAAA--ATGT------TTTCAAAA-CACG------CT-ACAGGCTAGTT----------CT-------GAACAT--TCCATGAA-TGTCGGTAATTACGCGTAAAAATCTTAGGTCCCTTGTAAAA-----AGTTTCTTTAGCA-TTACACTGATAATTTAGTT----------------TGTTTTTAATGGGGTGTCTTTGCTGTATC-------CTTACTTGCGAGAAGATCGTTAATTTCATCGAAGCTGAGAATA--TGCATCTATCCGACATTGTTTACGTATGACGTCG----------ATGACGT-----TTGCTCCTCTCGGTAG-TTTTCGTTTAAttc
gi|5 : tattcgattaaacagcaaattatgagggggaattttatcgtatatttat-TATGCAGAGTGA-TAGA---TG-AATA-TTAAAGTAAGCTAT-----CATCTGCAAT-AAGTCTCCTAGA--TTAAAAAA--AA-G-CCTCAAGA-AAGAATTTACAGGTTTATTCAAAACACAAA---A----CAGTTGAA------TA---CTGCATCGCTGTCATTTCCG--A-G--GA-ATGTCAATGGCAACGTTGCAAATGTCCG---------CGTTCCAAAATTAAAA-AATCAACTAAAA------CATATATTC------ATTTAATTTCGAGTGTTT--TAAAATAGA-CCTCGATTA----GTTTTTCTCG-CCCCAACATAAA--ATACTCTCAGTTTCAAAT-C---GCAGGCC------ACTAGTTCT---TGAGACTTCC-TTCGACCAA--T-CGTGAA-TATCGGCATc
gi|4 : atA-TTAAAGTGAGCT--GC---CATCTGAAAT-A--TATACAACATCTTAAAAAG--A----------------AAAT----AGT-----CAAAACTTCAA--C-----TAGTTGAATGCTGC---------ATCGCAGTAATATCTAAAA-GTCAA-CGTTTA-CGATAAACTTAC------CAGAGAAATC--TGATGTAAAATTAAGA-AATGCGATGAAA------CA-----TAGCATCCATTTGATTTTGAGTGTTT--CTGAAGAGA-TTATCGTTC----GTTATTCTTG-CCCCAAC----A--ATAT------TTTCAAAT-CAA---AAGCAT-ATATTTTTTTT-TTTATG---------TTAGAACCA--T-CATGAA-TGTCGGATTTTACACGTAT-----TTTAGTCTCTTGTGAAAAaaacgc
gi|3 : AAGTTTATTCAAAACTCAAA--TC----TAGTTGA------CTA---CTGCATCGCTGTCATTTCTGAAA-G--GAGATGTTAATGGTAATGGTACAAATGTCAGAGAAGCCA------TAATATTAAGGCAATCCACTGAAAACATATCA-----TCC-----ATTTGATTT------------AAAGGATAGTCTCCGTTAAGTTGTTTTTCTCGTCCCCAACATCAATGATGC------TTTCAAAAACATGGTAGGCCTGAAAGAC-AGTC-C---TCAGATTTTCGTTTGAAAAAAAT-ACTGAAATGTGGTTGTCTGAATGTAA-----AGAAGTCT-------------------CTTAAACATTTTCAC------------T----------------TTTT----------TGTC-TTGCCGTGCCTTACGTGCTAACTTGCTAGAAGATCGTTAATATCATCAGAGCTTGGAA-GATGAAATCTAACCGATATTGTTT-------ATGTCAGCTT-AAT-TATG-TATAACATTTGCTTCTCTCAGGAT-TTTTTGTTAAAgtattagtaagtagttcaccgataatttagttcattttt
gi|7 : GTCATTTCTGAAA-GG-AA-ATGTTGATGGTGACGTCACAAATGTCAGCGACATT--TGGTCCAGAc
gi|6 : atattcggttaaacaaattatcaaacaaactttttacttgatttattttgtaacaataattcaattatggagaatgttagatgaatattaaagtaagctaccatctgcaataagtatcacatacataaaaaatgattttcaaggcagaatttacacggtttacactgcattgtt-AATCCACTGGGA------CA-----TAC-----ATTTA--TT--ATTGTTTTAAAAAAGAGA-TCTCCGTTC----GTTTTTCTCA-CCCCTACATACA--ATGC------TTTCAAA----------------T-GACTAGTTCT---TGAAACTTCC-TTCGGACAA--T-CGTTAA-TGTCGGCATTTACACGCAA-----TTTAGTCTCTTATAAAAAAG-TA---TCTTAAACA-TGTTACGAACTT------T----------------TG-T----------TGTATTTGCCGTTAC-------CTTACTTGCTAGAAGATCATTAATTTCTTCCGAGCAGGGAA-GATGATGCCTAACCGACATTGTTTATGTATGACGTCAGCTT--ACGTATTTCGT-----TCGCTTCTCTCGGGTGTTTTTTGTTCAAt
gi|9 : taattA--T-CGTGAA-TGTCGGCATTTATACGTAA-----TTCGGTCTCTTGTAAAG-------TCTCTTAAACA-TTTCAC------------TGATAATTTAGTTAACTTTTT----------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCACCGGAGCTGGGAA-GATGAAACCTAACAGACATTGTTTACGTATGACGTCAGCTT--ACGTATGACGTCGT--CAGCTTCTCTCGGGAG-TTTTTGTTCAc
gi|13 : TTGCCGTGTT-------CTTACTTGCGAAAAGATCGGTAATTTCATCGGAGCTAGGAA-GATGAAACCTATCTTGCATTGTTTTTGTATA---------------TATGACGT-----CTGCTCCTCTCGGGAA-ATTTTGTTC
gi|17 : GAAAATCGTTAATTTCATCGAAACTGGAAA-GATGAAACgt
gi|15 : GTATACATATGACGCCTGCTT--ACGTGTGACGT-----TTTCTCCTCTTGGGAG-TTTT
Alignments
lowQualScore : 3333 222222222222 33333 11111 22222 11 222222222 33333333333333 111111 111 3333333 11 1111 111111 55555555555555 22222222222222 11111 111 2222222222 888888888888888888888888888888888888888888 2222222 11111111111 11111111
lowQualScore : 4 4444 3 777 0 999999999999 0 5 66666 3 4 777 4 4 00000 4 4 66 1 11111 77 1 5 0 3 00 444444444 99999999999999 222222 0 3 000 0 5 6 6 8888888 44 3 2 99 6 4444 6 99 999999 6 1 11111111111111 1 22222222222222 1 5 1 66666 55 111 5555555555 6 555555555555555555555555555555555555555555 0 1111111 1 0 11 88888888888 22222222 5
lowQualScore : . .... . ... . ............ . . ..... . . ... . . ..... . . .. . ..... .. . . . . .. ......... .............. ...... . . ... . . . . ....... .. . . .. . .... . .. ...... . . .............. . .............. . . . ..... .. ... .......... . .......................................... . ....... . . .. ........... ........ .
lowQualScore : 0 0000 2 000 8 333333333333 9 0 44444 4 4 888 4 0 00000 0 0 33 1 55555 22 4 0 1 4 44 555555555 44444444444444 000000 6 2 888 3 2 7 7 5555555 33 7 5 22 7 2222 7 22 222222 7 0 33333333333333 0 88888888888888 0 7 7 77777 22 777 2222222222 7 222222222222222222222222222222222222222222 8 7777777 7 7 00 11111111111 00000000 7
consensus : NNAGTCTNCACTCGGTTACTTAAACAACAATTGATNAGGGAAAATC------------ATTTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATATT-AAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAAT-G--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA--TGCTA---C-TGCATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACAT-A-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA-GG-AGGCCT-A-AGACTAGTTCT---TGAGACTTCC-TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTCGGTCTCT---TGTAAA-A-----AG-T-CTCTTAAACATTTCAC-------------GA--------CTTTT-T----------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
Reference ( family-980 ) : NNAGTCTACACTCGGTTA--TAAACAACAATTGANCAGGGAAAATC------------ATTTTGTAACAA-TAATTCAATTAT--TATGCGGAATGG-TAGA---TG-AATATT-AAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAAT-G--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA--TGCTA---C-CGCATCGCTGTCATTTCTGAAA-G-AA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACAT-N-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-TCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA-GG-AGGCCT-ATAGACTAGTTCT---TGAGACTTCC-TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTNAGTCTCT---TGTAAA-A-----AA-T-CTCTTAAACATTTCAC-------------GA--------CTTNT-T----------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTTGTTCAA
gi|1 : AGTCTTCACTCGGTTACTTAAACAACAATTGAACAGGGAAAATC------------ATTTTGTAACAG-TAATTCAGTTATA-TATGCAGAATGG-TAGA---TG-AATATT-AAAGTGAGCTATGCATGCATCTGCAAT-AAGTATCCTAG-AT-TTAAAAAAAT-A--TTTCAAGG-TACAAATGCCA-AGTTTATTCAAAACTCG-AA-------TATAGTTGAAGCTCCTAGATC-TATATCACAGTCATTTCTGAAA-G-AA-ATTTTAATGACAACGTTACAAATGTCAGAGAAACCAATGGTCCAAAATTAAGG-AATCCACTG-AAACAT-C-----GGTTTAATTTCGAGTGTTTAAAAG--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAAACACGGTAGGCCT-ATAGACTAGTT-TAAATGAGACTTCC-TTCGAACAAT-CGTGAATATCGGCATTTACAGGTAA-----TTCAGTCTCT---TGTAAA-AAAAATAA-T-CTCTTAAACATTTC----------------A--------CTTGC-T----------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAACTTAAACCTAACCAACATTGTTTACGTATGACGTCAGC----TCAAAC-TATGACGTAACT-T--GCTTCTCTCAGGCG-TTTTCGTTCAA
gi|10 : atAGTCTACACTCGGGT---TAAACAACAATTTATATGGGAAAATC------------ATTTTATAATAA-TAATTCAGTTAT-----GCTGAATGG-TAGA---TG-GATATTTAAAGTGAGCTGC-----CATCTGCAAT-AAGTATCCTGA-AT-TTAAAAAAATAG--TTTCATCG-TAGAAATTACA-AGTTTAATCAAAACTCGAAA-------C-TA---GAA--C-CTA---C-TGCATCGCTGTCATTT
gi|11 : gATC------------TTTTTGTATCAA-TAAATCAATTAT-----GCAGGATAGCTGCAATCTG-AATATT-AAAGTGATTTAC-----CATCTGCAAT-AAGTATCACAG-AT-AAAAACAAATAA--TTCCAAG
gi|12 : ttcggggttaatctcacaatatcggaaaaacatcataattattttAAACAACAACTGATGATGGAAAATTGTAACTTCAGTTATTTTGTAACAA-TAATTCATTTAT--T---CGGAATGA-CAAA---TG-AATATT-AAAGTGCGCTAC-----CATCCGCAAT-ACGTATTACAG-A--TTAAAAGAA--G--TTTCAAGA-TA
gi|13 : cggccTTGCCGTGTT-------CTTACTTGCGAAAAGATCGGTAATTTCATCGGAGCTAGGAAGATGAAACCTATCTTGCATTGTTTTTGTAT-------------------ATATGACGT---C-T--GCTCCTCTCGGGAA-ATTTTGTTCa
gi|14 : ------------ATTTTGCAACAAATAATTCAATT----TACGCAGAATGG-TAGG---TGAAATATT---AGTGAGCTAC-----AA-CTGCAGTAAAATATCACAG-AT-T--AAAAAAT-G--Tgt
gi|15 : aatcatacaaatttatGTATACATATGACGCCTGC----TT--ACGTGTGACGT---T-T--TCTCCTCTTGGGAG-TTTTacaaatttc
gi|16 : GTCTTCACTCGGTTACTTAAACAA---TTGATCAGGGAAA
gi|17 : cataatggcGAAAATCGTTAATTTCATCGAAACTGGAAAGATGAAAC
gi|2 : TTTTGCATCAA-TAATTCAATTAT-----GCAGAATGG-TGGA---GA-AATACT-ATAGTAAATTTT-----CCTCTGCAAT-CATTTTCATGG-AT-ATAAACAAATAG--TTTCAAAAATAGAAATTACA-AGTTTATTCCAAATTCT-AA-------C-TAGTTGAA--TGCT-------GCATCGCTGTCATTTCTAAAA-A-TC-ATGTTTATGGTGACGTTAGAAATACCAGAAAAATT--TGATTCAAGATTAGAG-AATCCACTA-AAATAT-A-----CA------TGCGAGTGTTTTAAAA--GAGA-CATCCGCTA----GTTTTTCTTG-CCCCAACATAAA--ATGT------TTTC-AAAACA-CG-----CT-ACAGGCTAGTTCT-----------------GAACATTCCATGAATGTCGGTAATTACGCGTAAAAATCTTAGGTCCCT---TGTAAA-A-----AG-T-TTCTTTAGCATTACACT------------GATAATTTAGTTTGT-TTTTAATGGGGTGTCTTTGCTGTATC-------CTTACTTGCGAGAAGATCGTTAATTTCATCGAAGCTGAGAATATG-CATCTATCCGACATTGTTTACGTATGACGTCG--------------ATGACGT---T-T--GCTCCTCTCGGTAG-TTTTCGTTTAA
gi|3 : tattcgattaaacagcaaattatgagggggaattttatcgtatatttatA-AGTTTATTCAAAACTCA-AAT------C-TAGTTGA-----CTA---C-TGCATCGCTGTCATTTCTGAAA-G-GAGATGTTAATGGTAATGGTACAAATGTCAGAGAAGCC----AT--AATATTAAGGCAATCCACTGAAAACATAT-----CATCCA--TTTGA----TTTAAAG--GATAGTCTCCGTTAAGTTGTTTTTCTCGTCCCCAACATCAATGATGC------TTTCAAAAACATGGTAGGCCTGAAAGAC-AGTCCT---C-AGATTTTCGTTTGAAAAA------AAT------ACTGAAATGTGG-----TTG----TCTGAATGTAAAGA-----AG-T-CTCTTAAACATTTT-C--------------A--------CTTTT-T----------TGTC-TTGCCGTGCCTTACGTGCTAACTTGCTAGAAGATCGTTAATATCATCAGAGCTTGGAAGATGAAATCTAACCGATATTGTTT-------ATGTCAGCTTAATT--ATGTATAACAT---T-T--GCTTCTCTCAGGAT-TTTTTGTTAAAc
gi|4 : ATT-AAAGTGAGCTGC-----CATCTGAAAT-A--TAT-ACAACATCTTAAAAAGA-----------------AAAT-----AGT-----CAAAACTTC-AA-------C-TAGTTGAA--TGCT-------GCATCGCAGTAATATCTAAAA-GTCA-ACGTTTACGATAAACTTAC------CAGAGAAATC--TGATGTAAAATTAAGA-AATGCGATG-AAACAT-AGCATCCATTTGATTTTGAGTGTTTCTGAA--GAGA-TTATCGTTC----GTTATTCTTG-CCCCAAC----A--ATAT------TTTC-AAATCA--A-AAGCAT-ATATTTTTTTTTT---TATG-------TTAGAACCAT-CATGAATGTCGGATTTTACACGTAT-----TTTAGTCTCT---TGTGAA-A-----AG-TATTAGTAAGTAGTTCAC-------------c
gi|5 : AT--TATGCAGAGTGA-TAGA---TG-AATATT-AAAGTAAGCTAT-----CATCTGCAAT-AAGTCTCCTAG-AT-TAAAAAAAA--G--CCTCAAGA-AAGAATTTACA-GGTTTATTCAAAACACA-AA-------A-CAGTTGAA--TACT-------GCATCGCTGTCATTTCCGA---G-GA-ATGTCAATGGCAACGTTGCAAATGTCCG---------CGTTCCAAAATTAAAA-AATCAACTA-AAACAT-ATATT-CATTTAATTTCGAGTGTTTTAAAA--TAGA-CCTCGATTA----GTTTTTCTCG-CCCCAACATAAA--ATACTCTCAGTTTC-AAATC--GC-AGGCC------ACTAGTTCT---TGAGACTTCC-TTCGACCAAT-CGTGAATATCGGCATcgataatttagttcattttt
gi|6 : -AATCCACTG-GGACAT-A-----CATTTA--TT--ATTGTTTTAAAAAAGAGA-TCTCCGTTC----GTTTTTCTCA-CCCCTACATACA--ATGC------TTTC-AAAT----------------GACTAGTTCT---TGAAACTTCC-TTCGGACAAT-CGTTAATGTCGGCATTTACACGCAA-----TTTAGTCTCT---TATAAA-A-----AAGT-ATCTTAAACATGTTAC-------------GAA-------CTTTTGT----------TGTATTTGCCGTTAC-------CTTACTTGCTAGAAGATCATTAATTTCTTCCGAGCAGGGAAGATGATGCCTAACCGACATTGTTTATGTATGACGTCAGC----TT--ACGTATTTCGT---T-C--GCTTCTCTCGGGTGTTTTTTGTTCAAaaacgc
gi|7 : taattTT------------ATTTTGTAACAA-TAATTCAATTAT-----GGAGAATGT-TAGA---TG-AATATT-AAAGTAAGCTAC-----CATCTGCAAT-AAGTATCACAT-AC-AT-AAAAAAT-GATTTTCAAGG-CAGAATTTACACGGTTTA--CA-------------------------------------C-TGCATTGTTGTCATTTCTGAAAGG-AA-ATGTTGATGGTGACGTCACAAATGTCAGCGACATT--TGGTCCAGAc
gi|8 : atattcggttaaacaaattatcaaacaaactttttacttgatGTCTATATTCGGTTA----AACAATAAATTATACGGGAAA-----------------TTTA-AAC---TAAT---GTTGTAATATGCGAAATGG-TAGA---TG-AATATT-AAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-A--TTAATAAAAA-G--TTTCAAGC-TAGAAATTACA-AGTGTATTCAAAGCTTA-AAACTAGGCC-TAGTTGAA--TACTG---TGCACATCGCTGTTATTTCTGAAAGG-AA-ATGTTAATGGTAACGTTACAAATGTt
gi|9 : AT-CGTGAATGTCGGCATTTATACGTAA-----TTCGGTCTCT---TGTAAA-G--------T-CTCTTAAACATTTCACTGATAATTTAGTTAA--------CTTTT-T----------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCACCGGAGCTGGGAAGATGAAACCTAACAGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---CGTCAGCTTCTCTCGGGAG-TTTTTGTTCA
Alignments
lowQualScore : 111 55555555555555555555555555555 44444 11111 22222 11 222222222 333333333333 1 111 33333 11 1111 111111 6666666666666666 2222222222222222 11111 11 222222222 888888888888888888888888888888 2222222 2222222 11111111111 11111111
lowQualScore : 1 222 2 2 1 11111111111111111111111111111 0 5 1 88888 4 777 4 4 00000 4 4 66 1 11111 77 1 5 0 3 00 444444444 222222222222 66 1 6666 0 3 000 0 5 6 6 77777 44 3 2 99 6 4444 6 99 999999 6 1 8888888888888888 1 7777777777777777 1 5 1 66666 00 6 444444444 6 333333333333333333333333333333 8 6666666 0 1111111 1 0 11 88888888888 22222222 5 0
lowQualScore : . ... . . . ............................. . . . ..... . ... . . ..... . . .. . ..... .. . . . . .. ......... ............ .. . .... . . ... . . . . ..... .. . . .. . .... . .. ...... . . ................ . ................ . . . ..... .. . ......... . .............................. . ....... . ....... . . .. ........... ........ . .
lowQualScore : 0 666 2 5 0 22222222222222222222222222222 9 0 1 22222 4 888 4 0 00000 0 0 33 1 55555 22 4 0 1 4 44 555555555 444444444444 99 4 9999 6 2 888 3 2 7 7 55555 33 7 5 22 7 2222 7 22 222222 7 0 5555555555555555 0 3333333333333333 0 7 7 77777 00 7 222222222 7 222222222222222222222222222222 0 0000000 8 7777777 7 7 00 11111111111 00000000 7 7
consensus : NNAGTCTNCACTCGGTTACTTAAACAACAANTNATNAGGGAAAAT-----C------------AT---------TTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAAT-G--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA--T-CTA---CTG--CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA-GG-AGGCCT--A-AGACTAGTTCT---TGAGACTTCC---TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAA-A-----A-GT-CTCTTAAACATTTCAC-------------GA-C-----------TTTT-T-------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
Reference ( family-980 ) : NNAGTCTNCACTCGGTTACTTAAACAACAATTGATNAGGGAAAAT-----C------------AT---------TTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAAT-G--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA--TGCTA---CTG--CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA-GG-AGGCCT--A-AGACTAGTTCT---TGAGACTTCC---TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAA-A-----A-GT-CTCTTAAACATTTCAC-------------GA-C-----------TTTT-T-------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
gi|1 : AGTCTTCACTCGGTTACTTAAACAACAATTGAACAGGGAAAAT-----C------------AT---------TTTGTAACAG-TAATTCAGTTATA-TATGCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTATGCATGCATCTGCAAT-AAGTATCCTAG-AT-TTAAAAAAAT-A--TTTCAAGG-TACAAATGCCA-AGTTTATTCAAAACTCG-AA-------TATAGTTGAAGCTCCTAGATCTA--TATCACAGTCATTTCTGAAA-G-AA-ATTTTAATGACAACGTTACAAATGTCAGAGAAACCAATGGTCCAAAATTAAGG-AATCCACTG-AAACATC-----GGTTTAATTTCGAGTGTTTAAAAG--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAAACACGGTAGGCCT--ATAGACTAGTT-TAAATGAGACTTCC---TTCGAACAAT-CGTGAATATCGGCATTTACAGGTAA-----TTCAGTCT-CTTGTAAA-AAAAATA-AT-CTCTTAAACATTTC----------------A-C-----------TTGC-T-------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAACTTAAACCTAACCAACATTGTTTACGTATGACGTCAGC----TCAAAC-TATGACGTAACT-T--GCTTCTCTCAGGCG-TTTTCGTTCAA
gi|10 : atAGTCTACACTCGGGT---TAAACAACAATTTATATGGGAAAAT-----C------------AT---------TTTATAATAA-TAATTCAGTTAT-----GCTGAATGG-TAGA---TG-GATATTTAAAGTGAGCTGC-----CATCTGCAAT-AAGTATCCTGA-AT-TTAAAAAAATAG--TTTCATCG-TAGAAATTACA-AGTTTAATCAAAACTCGAAA-------C-TA---GAA--C-CTA---CTG--CATCGCTGTCATTT
gi|11 : gAT-----C------------TT---------TTTGTATCAA-TAAATCAATTAT-----GCAGGATAGCTGCAATCTG-AATA-TTAAAGTGATTTAC-----CATCTGCAAT-AAGTATCACAG-AT-AAAAACAAATAA--TTCCAAG
gi|12 : ttcggggttaatctcacaatatcggaaaaacatcataattattttAAACAACAACTGATGATGGAAAAT-----TGTAACTTCAGTTAT---------TTTGTAACAA-TAATTCATTTAT--T---CGGAATGA-CAAA---TG-AATA-TTAAAGTGCGCTAC-----CATCCGCAAT-ACGTATTACAG-A--TTAAAAGAA--G--TTTCAAGA-TA
gi|13 : cggccTTGCCGTGTT-------CTTACTTGCGAAAAGATCGGTAATTTCATCGGAGCTAGGAAGATGAAACCTATCTTGCATTGTTTTTGTAT-------------------ATATGACGT---C-T--GCTCCTCTCGGGAA-ATTTTGTTCa
gi|14 : ------------AT---------TTTGCAACAAATAATTCAATT----TACGCAGAATGG-TAGG---TGAAATA-TT--AGTGAGCTAC-----AA-CTGCAGTAAAATATCACAG-AT-T--AAAAAAT-G--Tgt
gi|15 : aatcatacaaatttatGTATACATATGACGCCTGC----TT--ACGTGTGACGT---T-T--TCTCCTCTTGGGAG-TTTTacaaatttc
gi|16 : GTCTTCACTCGGTTACTTA---AACAATTGATCAGGGAAA
gi|17 : cataatggcGAAAATCGTTAATTTCATCGAAACTGGAAAGATGAAAC
gi|2 : TTAAACAGCAAATTATGAGGGGGAATTTTATC------------GTATATTTATTTTTGCATCAA-TAATTCAATTAT-----GCAGAATGG-TGGA---GA-AATA-CTATAGTAAATTTT-----CCTCTGCAAT-CATTTTCATGG-AT-ATAAACAAATAG--TTTCAAAAATAGAAATTACA-AGTTTATTCCAAATTCT-AA-------C-TAGTTGAA--TGCT------G--CATCGCTGTCATTTCTAAAA-A-TC-ATGTTTATGGTGACGTTAGAAATACCAGAAAAATT--TGATTCAAGATTAGAG-AATCCACTA-AAATATA-----CA------TGCGAGTGTTTTAAAA--GAGA-CATCCGCTA----GTTTTTCTTG-CCCCAACATAAA--ATGT------TTTC-AAAACA-CG-----CT--ACAGGCTAGTTCT-------------------GAACATTCCATGAATGTCGGTAATTACGCGTAAAAATCTTAGGTCC-CTTGTAAA-A-----A-GT-TTCTTTAGCATTACACT------------GA-TAATTTAGTTTGTTTT-TAATGGGGTGTCTTTGCTGTATC-------CTTACTTGCGAGAAGATCGTTAATTTCATCGAAGCTGAGAATATG-CATCTATCCGACATTGTTTACGTATGACGTCG--------------ATGACGT---T-T--GCTCCTCTCGGTAG-TTTTCGTTTAA
gi|3 : tattcgaA-AGTTTATTCAAAACTCA-AAT------C-TAGTTGA-----CTA---CTG--CATCGCTGTCATTTCTGAAA-G-GAGATGTTAATGGTAATGGTACAAATGTCAGAGAAGCC----AT--AATATTAAGGCAATCCACTGAAAACATAT----CATCCA--TTTGA----TTTAAAG--GATAGTCTCCGTTAAGTTGTTTTTCTCGTCCCCAACATCAATGATGC------TTTCAAAAACATGGTAGGCCTGAA-AGAC-AGTCCT---C-AGATTTTCG--TTTGAAAAA------AAT------ACTGAAATGTGG-----TT--GTCTGAATGTAAAGA-----A-GT-CTCTTAAACATTTT-C--------------A-C-----------TTTT-T-------TGTC-TTGCCGTGCCTTACGTGCTAACTTGCTAGAAGATCGTTAATATCATCAGAGCTTGGAAGATGAAATCTAACCGATATTGTTT-------ATGTCAGCTTAATT--ATGTATAACAT---T-T--GCTTCTCTCAGGAT-TTTTTGTTAAAc
gi|4 : A-TTAAAGTGAGCTGC-----CATCTGAAAT-A--TAT-ACAACATCTTAAAAAGA-----------------AAAT-----AGT-----CAAAACTTC-AA-------C-TAGTTGAA--TGCT------G--CATCGCAGTAATATCTAAAA-GTCA-ACGTTTACGATAAACTTAC------CAGAGAAATC--TGATGTAAAATTAAGA-AATGCGATG-AAACATAGCATCCATTTGATTTTGAGTGTTTCTGAA--GAGA-TTATCGTTC----GTTATTCTTG-CCCCAAC----A--ATAT------TTTC-AAATCA--A-AAGCAT--A-----TATTTTT---T----TTTTTATGTTAGAACCAT-CATGAATGTCGGATTTTACACGTAT-----TTTAGTCT-CTTGTGAA-A-----A-GTATTAGTAAGTAGTTCAC-------------c
gi|5 : AT--TATGCAGAGTGA-TAGA---TG-AATA-TTAAAGTAAGCTAT-----CATCTGCAAT-AAGTCTCCTAG-AT-TAAAAAAAA--G--CCTCAAGA-AAGAATTTACA-GGTTTATTCAAAACACA-AA-------A-CAGTTGAA--T---A---CTG--CATCGCTGTCATTTCCGA---G-GA-ATGTCAATGGCAACGTTGCAAATGTCCG---------CGTTCCAAAATTAAAA-AATCAACTA-AAACATATATT-CATTTAATTTCGAGTGTTTTAAAA--TAGA-CCTCGATTA----GTTTTTCTCG-CCCCAACATAAA--ATACTCTCAGTTTC-AAATC--GC-AGGCC-------ACTAGTTCT---TGAGACTTCC---TTCGACCAAT-CGTGAATATCGGCATcgataatttagttcattttt
gi|6 : -AATCCACTG-GGACATA-----CATTTA--TT--ATTGTTTTAAAAAAGAGA-TCTCCGTTC----GTTTTTCTCA-CCCCTACATACA--ATGC------TTTC-AAAT-----------------GACTAGTTCT---TGAAACTTCC---TTCGGACAAT-CGTTAATGTCGGCATTTACACGCAA-----TTTAGTCT-CTTATAAA-A-----AAGT-ATCTTAAACATGTTAC-------------GAAC-----------TTTTGT-------TGTATTTGCCGTTAC-------CTTACTTGCTAGAAGATCATTAATTTCTTCCGAGCAGGGAAGATGATGCCTAACCGACATTGTTTATGTATGACGTCAGC----TT--ACGTATTTCGT---T-C--GCTTCTCTCGGGTGTTTTTTGTTCAAaaacgc
gi|7 : taattT-----T------------AT---------TTTGTAACAA-TAATTCAATTAT-----GGAGAATGT-TAGA---TG-AATA-TTAAAGTAAGCTAC-----CATCTGCAAT-AAGTATCACAT-AC-AT-AAAAAAT-GATTTTCAAGG-CAGAATTTACACGGTTTA--CA-------------------------------------CTG--CATTGTTGTCATTTCTGAAAGG-AA-ATGTTGATGGTGACGTCACAAATGTCAGCGACATT--TGGTCCAGAc
gi|8 : atattcggttaaacaaattatcaaacaaactttttacttgatGTCTATATTCGGTTA----AACAATAAATTATACGGGAAA-------------------------------TTTA-AAC---TAAT---GTTGTAATATGCGAAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-A--TTAATAAAAA-G--TTTCAAGC-TAGAAATTACA-AGTGTATTCAAAGCTTA-AAACTAGGCC-TAGTTGAA--TACTG----TGCACATCGCTGTTATTTCTGAAAGG-AA-ATGTTAATGGTAACGTTACAAATGTt
gi|9 : AT-CGTGAATGTCGGCATTTATACGTAA-----TTCGGTCT-CTTGTAAA---------GT-CTCTTAAACATTTCACTGATAATTTAGTTAA-C-----------TTTT-T-------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCACCGGAGCTGGGAAGATGAAACCTAACAGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---CGTCAGCTTCTCTCGGGAG-TTTTTGTTCA
Alignments
lowQualScore : 111 777777777777777777777777777777777777777777 44444 11111 22222 11 222222222 33333333333 1111 1 111 33333 11 1111 111111 6666666666666666 2222222222222222 11111 11 222222222 888888888888888888888888888888 2222222 2222222 11111111111 11111111
lowQualScore : 1 888 1 1 1 1 222222222222222222222222222222222222222222 0 5 1 88888 4 777 4 4 00000 4 4 66 1 11111 77 1 5 0 3 00 444444444 66666666666 0000 1 6666 0 3 000 0 5 6 6 77777 44 3 2 99 6 4444 6 99 999999 6 1 8888888888888888 1 7777777777777777 1 5 1 66666 00 6 444444444 6 333333333333333333333333333333 8 6666666 0 1111111 1 0 11 88888888888 22222222 5 0
lowQualScore : . ... . . . . .......................................... . . . ..... . ... . . ..... . . .. . ..... .. . . . . .. ......... ........... .... . .... . . ... . . . . ..... .. . . .. . .... . .. ...... . . ................ . ................ . . . ..... .. . ......... . .............................. . ....... . ....... . . .. ........... ........ . .
lowQualScore : 0 888 4 0 0 0 444444444444444444444444444444444444444444 9 0 1 22222 4 888 4 0 00000 0 0 33 1 55555 22 4 0 1 4 44 555555555 11111111111 6666 4 9999 6 2 888 3 2 7 7 55555 33 7 5 22 7 2222 7 22 222222 7 0 5555555555555555 0 3333333333333333 0 7 7 77777 00 7 222222222 7 222222222222222222222222222222 0 0000000 8 7777777 7 7 00 11111111111 00000000 7 7
consensus : NNAGTCTNCACTCGGTTACTTAAACAACAANTTATNAGGGAAA-----------AT-----C------------AT---------TTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAAT-G--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA---TCTA---CTG----CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA-GG-AGGCCT--A-AGACTAGTTCT---TGAGACTTCC---TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAA-A-----A-GT-CTCTTAAACATTTCAC-------------GA-C-----------TTTT-T-------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
Reference ( family-980 ) : NNAGTCTNCACTCGGTTACTTAAACAACAANTNATNAGGGAAA-----------AT-----C------------AT---------TTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAAT-G--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA---TCTA---CTG----CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA-GG-AGGCCT--A-AGACTAGTTCT---TGAGACTTCC---TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAA-A-----A-GT-CTCTTAAACATTTCAC-------------GA-C-----------TTTT-T-------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
gi|1 : AGTCTTCACTCGGTTACTTAAACAACAATTGAACAGGGAAA-----------AT-----C------------AT---------TTTGTAACAG-TAATTCAGTTATA-TATGCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTATGCATGCATCTGCAAT-AAGTATCCTAG-AT-TTAAAAAAAT-A--TTTCAAGG-TACAAATGCCA-AGTTTATTCAAAACTCG-AA-------TATAGTTGAAGCTCCTAGATCTA----TATCACAGTCATTTCTGAAA-G-AA-ATTTTAATGACAACGTTACAAATGTCAGAGAAACCAATGGTCCAAAATTAAGG-AATCCACTG-AAACATC-----GGTTTAATTTCGAGTGTTTAAAAG--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAAACACGGTAGGCCT--ATAGACTAGTT-TAAATGAGACTTCC---TTCGAACAAT-CGTGAATATCGGCATTTACAGGTAA-----TTCAGTCT-CTTGTAAA-AAAAATA-AT-CTCTTAAACATTTC----------------A-C-----------TTGC-T-------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAACTTAAACCTAACCAACATTGTTTACGTATGACGTCAGC----TCAAAC-TATGACGTAACT-T--GCTTCTCTCAGGCG-TTTTCGTTCAA
gi|10 : atAGTCTACACTCGGGT---TAAACAACAATTTATATGGGAAA-----------AT-----C------------AT---------TTTATAATAA-TAATTCAGTTAT-----GCTGAATGG-TAGA---TG-GATATTTAAAGTGAGCTGC-----CATCTGCAAT-AAGTATCCTGA-AT-TTAAAAAAATAG--TTTCATCG-TAGAAATTACA-AGTTTAATCAAAACTCGAAA-------C-TA---GAA---CCTA---CTG----CATCGCTGTCATTT
gi|11 : g-----------AT-----C------------TT---------TTTGTATCAA-TAAATCAATTAT-----GCAGGATAGCTGCAATCTG-AATA-TTAAAGTGATTTAC-----CATCTGCAAT-AAGTATCACAG-AT-AAAAACAAATAA--TTCCAAG
gi|12 : ttcggggttaatctcacaatatcggaaaaacatcataattattttAAACAACAACTGATGATGGAAA-----------AT-----TGTAACTTCAGTTAT---------TTTGTAACAA-TAATTCATTTAT--T---CGGAATGA-CAAA---TG-AATA-TTAAAGTGCGCTAC-----CATCCGCAAT-ACGTATTACAG-A--TTAAAAGAA--G--TTTCAAGA-TA
gi|13 : cggccTTGCCGTGTT-------CTTACTTGCGAAAAGATCGGTAATTTCATCGGAGCTAGGAAGATGAAACCTATCTTGCATTGTTTTTGTAT-------------------ATATGACGT---C-T--GCTCCTCTCGGGAA-ATTTTGTTCa
gi|14 : ------------AT---------TTTGCAACAAATAATTCAATT----TACGCAGAATGG-TAGG---TGAAATA-TT--AGTGAGCTAC-----AA-CTGCAGTAAAATATCACAG-AT-T--AAAAAAT-G--Tgt
gi|15 : aatcatacaaatttatGTATACATATGACGCCTGC----TT--ACGTGTGACGT---T-T--TCTCCTCTTGGGAG-TTTTacaaatttc
gi|16 : GTCTTCACTCGGTTACTTA---AACAATTGATCAGGGAAA-----------
gi|17 : cataatggcGAAAATCGTTAATTTCATCGAAACTGGAAAGATGAAAC
gi|2 : TTAAACAGCAAATTATGAGGGGGA-----------ATTTTATC------------GTATATTTATTTTTGCATCAA-TAATTCAATTAT-----GCAGAATGG-TGGA---GA-AATA-CTATAGTAAATTTT-----CCTCTGCAAT-CATTTTCATGG-AT-ATAAACAAATAG--TTTCAAAAATAGAAATTACA-AGTTTATTCCAAATTCT-AA-------C-TAGTTGAA---T--G---CTG----CATCGCTGTCATTTCTAAAA-A-TC-ATGTTTATGGTGACGTTAGAAATACCAGAAAAATT--TGATTCAAGATTAGAG-AATCCACTA-AAATATA-----CA------TGCGAGTGTTTTAAAA--GAGA-CATCCGCTA----GTTTTTCTTG-CCCCAACATAAA--ATGT------TTTC-AAAACA-CG-----CT--ACAGGCTAGTTCT-------------------GAACATTCCATGAATGTCGGTAATTACGCGTAAAAATCTTAGGTCC-CTTGTAAA-A-----A-GT-TTCTTTAGCATTACACT------------GA-TAATTTAGTTTGTTTT-TAATGGGGTGTCTTTGCTGTATC-------CTTACTTGCGAGAAGATCGTTAATTTCATCGAAGCTGAGAATATG-CATCTATCCGACATTGTTTACGTATGACGTCG--------------ATGACGT---T-T--GCTCCTCTCGGTAG-TTTTCGTTTAA
gi|3 : tattcgaA-AGTTTATTCAAAACTCA-AAT------C-TAGTTGA-----CTA---CTG----CATCGCTGTCATTTCTGAAA-G-GAGATGTTAATGGTAATGGTACAAATGTCAGAGAAGCC----AT--AATATTAAGGCAATCCACTGAAAACATAT----CATCCA--TTTGA----TTTAAAG--GATAGTCTCCGTTAAGTTGTTTTTCTCGTCCCCAACATCAATGATGC------TTTCAAAAACATGGTAGGCCTGAA-AGAC-AGTCCT---C-AGATTTTCG--TTTGAAAAA------AAT------ACTGAAATGTGG-----TT--GTCTGAATGTAAAGA-----A-GT-CTCTTAAACATTTT-C--------------A-C-----------TTTT-T-------TGTC-TTGCCGTGCCTTACGTGCTAACTTGCTAGAAGATCGTTAATATCATCAGAGCTTGGAAGATGAAATCTAACCGATATTGTTT-------ATGTCAGCTTAATT--ATGTATAACAT---T-T--GCTTCTCTCAGGAT-TTTTTGTTAAAc
gi|4 : A-TTAAAGTGAGCTGC-----CATCTGAAAT-A--TAT-ACAACATCTTAAAAAGA-----------------AAAT-----AGT-----CAAAACTTC-AA-------C-TAGTTGAA---T--G---CTG----CATCGCAGTAATATCTAAAA-GTCA-ACGTTTACGATAAACTTAC------CAGAGAAATC--TGATGTAAAATTAAGA-AATGCGATG-AAACATAGCATCCATTTGATTTTGAGTGTTTCTGAA--GAGA-TTATCGTTC----GTTATTCTTG-CCCCAAC----A--ATAT------TTTC-AAATCA--A-AAGCAT--A-----TATTTTT---T----TTTTTATGTTAGAACCAT-CATGAATGTCGGATTTTACACGTAT-----TTTAGTCT-CTTGTGAA-A-----A-GTATTAGTAAGTAGTTCAC-------------c
gi|5 : AT--TATGCAGAGTGA-TAGA---TG-AATA-TTAAAGTAAGCTAT-----CATCTGCAAT-AAGTCTCCTAG-AT-TAAAAAAAA--G--CCTCAAGA-AAGAATTTACA-GGTTTATTCAAAACACA-AA-------A-CAGTTGAA---T--A---CTG----CATCGCTGTCATTTCCGA---G-GA-ATGTCAATGGCAACGTTGCAAATGTCCG---------CGTTCCAAAATTAAAA-AATCAACTA-AAACATATATT-CATTTAATTTCGAGTGTTTTAAAA--TAGA-CCTCGATTA----GTTTTTCTCG-CCCCAACATAAA--ATACTCTCAGTTTC-AAATC--GC-AGGCC-------ACTAGTTCT---TGAGACTTCC---TTCGACCAAT-CGTGAATATCGGCATcgataatttagttcattttt
gi|6 : -AATCCACTG-GGACATA-----CATTTA--TT--ATTGTTTTAAAAAAGAGA-TCTCCGTTC----GTTTTTCTCA-CCCCTACATACA--ATGC------TTTC-AAAT-----------------GACTAGTTCT---TGAAACTTCC---TTCGGACAAT-CGTTAATGTCGGCATTTACACGCAA-----TTTAGTCT-CTTATAAA-A-----AAGT-ATCTTAAACATGTTAC-------------GAAC-----------TTTTGT-------TGTATTTGCCGTTAC-------CTTACTTGCTAGAAGATCATTAATTTCTTCCGAGCAGGGAAGATGATGCCTAACCGACATTGTTTATGTATGACGTCAGC----TT--ACGTATTTCGT---T-C--GCTTCTCTCGGGTGTTTTTTGTTCAAaaacgc
gi|7 : taattATTCGGTTA-------AACAAATTATCAAACAAACTTTTTACTTGAT-----TT-----------AT---------TTTGTAACAA-TAATTCAATTAT-----GGAGAATGT-TAGA---TG-AATA-TTAAAGTAAGCTAC-----CATCTGCAAT-AAGTATCACAT-AC-AT-AAAAAAT-GATTTTCAAGG-CAGAATTTACACGGTTTA------------------------------------CA---CTG----CATTGTTGTCATTTCTGAAAGG-AA-ATGTTGATGGTGACGTCACAAATGTCAGCGACATT--TGGTCCAGAc
gi|8 : atGTCTATATTCGGTTA----AACAATAAATTATACGGGAAA------------------------------------------TTTA-AAC---TAAT---GTTGTAATATGCGAAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-A--TTAATAAAAA-G--TTTCAAGC-TAGAAATTACA-AGTGTATTCAAAGCTTA-AAACTAGGCC-TAGTTGAA-----TA---CTGTGCACATCGCTGTTATTTCTGAAAGG-AA-ATGTTAATGGTAACGTTACAAATGTt
gi|9 : AT-CGTGAATGTCGGCATTTATACGTAA-----TTCGGTCT-CTTGTAAA---------GT-CTCTTAAACATTTCACTGATAATTTAGTTAA-C-----------TTTT-T-------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCACCGGAGCTGGGAAGATGAAACCTAACAGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---CGTCAGCTTCTCTCGGGAG-TTTTTGTTCA
Alignments
lowQualScore : 111 777777777777777777777777777777777777777777 44444 11111 22222 11 222222222 33333333333 1111 1 111 33333 11 1111 111111 6666666666666666 2222222222222222 11111 11 222222222 888888888888888888888888888888 2222222 2222222 11111111111 11111111
lowQualScore : 1 888 1 1 1 1 222222222222222222222222222222222222222222 0 5 1 88888 4 777 4 4 00000 4 4 66 1 11111 77 1 5 0 3 00 444444444 66666666666 0000 1 6666 0 3 000 0 5 6 6 77777 44 3 2 99 6 4444 6 99 999999 6 1 8888888888888888 1 7777777777777777 1 5 1 66666 00 6 444444444 6 333333333333333333333333333333 8 6666666 0 1111111 1 0 11 88888888888 22222222 5 0
lowQualScore : . ... . . . . .......................................... . . . ..... . ... . . ..... . . .. . ..... .. . . . . .. ......... ........... .... . .... . . ... . . . . ..... .. . . .. . .... . .. ...... . . ................ . ................ . . . ..... .. . ......... . .............................. . ....... . ....... . . .. ........... ........ . .
lowQualScore : 0 888 4 0 3 0 444444444444444444444444444444444444444444 9 0 1 22222 4 888 4 0 00000 0 0 33 1 55555 22 4 0 1 4 44 555555555 11111111111 6666 4 9999 6 2 888 3 2 7 7 55555 33 7 5 22 7 2222 7 22 222222 7 0 5555555555555555 0 3333333333333333 0 7 7 77777 00 7 222222222 7 222222222222222222222222222222 0 0000000 8 7777777 7 7 00 11111111111 00000000 7 7
consensus : NNAGTCTNCACTCGGTTACTTAAACAACAANTTATNAGGGAAA-----------AT-----C------------AT---------TTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAAT-G--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA---TCTA---CTG----CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA-GG-AGGCCT--A-AGACTAGTTCT---TGAGACTTCC---TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAA-A-----A-GT-CTCTTAAACATTTCAC-------------GA-C-----------TTTT-T-------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
Reference ( family-980 ) : NNAGTCTNCACTCGGTTACTTAAACAACAANTTATNAGGGAAA-----------AT-----C------------AT---------TTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAAT-G--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA---TCTA---CTG----CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA-GG-AGGCCT--A-AGACTAGTTCT---TGAGACTTCC---TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAA-A-----A-GT-CTCTTAAACATTTCAC-------------GA-C-----------TTTT-T-------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
gi|1 : AGTCTTCACTCGGTTACTTAAACAACAATTGAACAGGGAAA-----------AT-----C------------AT---------TTTGTAACAG-TAATTCAGTTATA-TATGCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTATGCATGCATCTGCAAT-AAGTATCCTAG-AT-TTAAAAAAAT-A--TTTCAAGG-TACAAATGCCA-AGTTTATTCAAAACTCG-AA-------TATAGTTGAAGCTCCTAGATCTA----TATCACAGTCATTTCTGAAA-G-AA-ATTTTAATGACAACGTTACAAATGTCAGAGAAACCAATGGTCCAAAATTAAGG-AATCCACTG-AAACATC-----GGTTTAATTTCGAGTGTTTAAAAG--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAAACACGGTAGGCCT--ATAGACTAGTT-TAAATGAGACTTCC---TTCGAACAAT-CGTGAATATCGGCATTTACAGGTAA-----TTCAGTCT-CTTGTAAA-AAAAATA-AT-CTCTTAAACATTTC----------------A-C-----------TTGC-T-------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAACTTAAACCTAACCAACATTGTTTACGTATGACGTCAGC----TCAAAC-TATGACGTAACT-T--GCTTCTCTCAGGCG-TTTTCGTTCAA
gi|10 : atAGTCTACACTCGGGT---TAAACAACAATTTATATGGGAAA-----------AT-----C------------AT---------TTTATAATAA-TAATTCAGTTAT-----GCTGAATGG-TAGA---TG-GATATTTAAAGTGAGCTGC-----CATCTGCAAT-AAGTATCCTGA-AT-TTAAAAAAATAG--TTTCATCG-TAGAAATTACA-AGTTTAATCAAAACTCGAAA-------C-TA---GAA---CCTA---CTG----CATCGCTGTCATTT
gi|11 : g-----------AT-----C------------TT---------TTTGTATCAA-TAAATCAATTAT-----GCAGGATAGCTGCAATCTG-AATA-TTAAAGTGATTTAC-----CATCTGCAAT-AAGTATCACAG-AT-AAAAACAAATAA--TTCCAAG
gi|12 : ttcggggttaatctcacaatatcggaaaaacatcataattattttAAACAACAACTGATGATGGAAA-----------AT-----TGTAACTTCAGTTAT---------TTTGTAACAA-TAATTCATTTAT--T---CGGAATGA-CAAA---TG-AATA-TTAAAGTGCGCTAC-----CATCCGCAAT-ACGTATTACAG-A--TTAAAAGAA--G--TTTCAAGA-TA
gi|13 : cggccTTGCCGTGTT-------CTTACTTGCGAAAAGATCGGTAATTTCATCGGAGCTAGGAAGATGAAACCTATCTTGCATTGTTTTTGTAT-------------------ATATGACGT---C-T--GCTCCTCTCGGGAA-ATTTTGTTCa
gi|14 : ------------AT---------TTTGCAACAAATAATTCAATT----TACGCAGAATGG-TAGG---TGAAATA-TT--AGTGAGCTAC-----AA-CTGCAGTAAAATATCACAG-AT-T--AAAAAAT-G--Tgt
gi|15 : aatcatacaaatttatGTATACATATGACGCCTGC----TT--ACGTGTGACGT---T-T--TCTCCTCTTGGGAG-TTTTacaaatttc
gi|16 : GTCTTCACTCGGTTACTTA---AACAATTGATCAGGGAAA-----------
gi|17 : cataatggcGAAAATCGTTAATTTCATCGAAACTGGAAAGATGAAAC
gi|2 : TTAAACAGCAAATTATGAGGGGGA-----------ATTTTATC------------GTATATTTATTTTTGCATCAA-TAATTCAATTAT-----GCAGAATGG-TGGA---GA-AATA-CTATAGTAAATTTT-----CCTCTGCAAT-CATTTTCATGG-AT-ATAAACAAATAG--TTTCAAAAATAGAAATTACA-AGTTTATTCCAAATTCT-AA-------C-TAGTTGAA---T--G---CTG----CATCGCTGTCATTTCTAAAA-A-TC-ATGTTTATGGTGACGTTAGAAATACCAGAAAAATT--TGATTCAAGATTAGAG-AATCCACTA-AAATATA-----CA------TGCGAGTGTTTTAAAA--GAGA-CATCCGCTA----GTTTTTCTTG-CCCCAACATAAA--ATGT------TTTC-AAAACA-CG-----CT--ACAGGCTAGTTCT-------------------GAACATTCCATGAATGTCGGTAATTACGCGTAAAAATCTTAGGTCC-CTTGTAAA-A-----A-GT-TTCTTTAGCATTACACT------------GA-TAATTTAGTTTGTTTT-TAATGGGGTGTCTTTGCTGTATC-------CTTACTTGCGAGAAGATCGTTAATTTCATCGAAGCTGAGAATATG-CATCTATCCGACATTGTTTACGTATGACGTCG--------------ATGACGT---T-T--GCTCCTCTCGGTAG-TTTTCGTTTAA
gi|3 : tattcgaA-AGTTTATTCAAAACTCA-AAT------C-TAGTTGA-----CTA---CTG----CATCGCTGTCATTTCTGAAA-G-GAGATGTTAATGGTAATGGTACAAATGTCAGAGAAGCC----AT--AATATTAAGGCAATCCACTGAAAACATAT----CATCCA--TTTGA----TTTAAAG--GATAGTCTCCGTTAAGTTGTTTTTCTCGTCCCCAACATCAATGATGC------TTTCAAAAACATGGTAGGCCTGAA-AGAC-AGTCCT---C-AGATTTTCG--TTTGAAAAA------AAT------ACTGAAATGTGG-----TT--GTCTGAATGTAAAGA-----A-GT-CTCTTAAACATTTT-C--------------A-C-----------TTTT-T-------TGTC-TTGCCGTGCCTTACGTGCTAACTTGCTAGAAGATCGTTAATATCATCAGAGCTTGGAAGATGAAATCTAACCGATATTGTTT-------ATGTCAGCTTAATT--ATGTATAACAT---T-T--GCTTCTCTCAGGAT-TTTTTGTTAAAc
gi|4 : A-TTAAAGTGAGCTGC-----CATCTGAAAT-A--TAT-ACAACATCTTAAAAAGA-----------------AAAT-----AGT-----CAAAACTTC-AA-------C-TAGTTGAA---T--G---CTG----CATCGCAGTAATATCTAAAA-GTCA-ACGTTTACGATAAACTTAC------CAGAGAAATC--TGATGTAAAATTAAGA-AATGCGATG-AAACATAGCATCCATTTGATTTTGAGTGTTTCTGAA--GAGA-TTATCGTTC----GTTATTCTTG-CCCCAAC----A--ATAT------TTTC-AAATCA--A-AAGCAT--A-----TATTTTT---T----TTTTTATGTTAGAACCAT-CATGAATGTCGGATTTTACACGTAT-----TTTAGTCT-CTTGTGAA-A-----A-GTATTAGTAAGTAGTTCAC-------------c
gi|5 : AT--TATGCAGAGTGA-TAGA---TG-AATA-TTAAAGTAAGCTAT-----CATCTGCAAT-AAGTCTCCTAG-AT-TAAAAAAAA--G--CCTCAAGA-AAGAATTTACA-GGTTTATTCAAAACACA-AA-------A-CAGTTGAA---T--A---CTG----CATCGCTGTCATTTCCGA---G-GA-ATGTCAATGGCAACGTTGCAAATGTCCG---------CGTTCCAAAATTAAAA-AATCAACTA-AAACATATATT-CATTTAATTTCGAGTGTTTTAAAA--TAGA-CCTCGATTA----GTTTTTCTCG-CCCCAACATAAA--ATACTCTCAGTTTC-AAATC--GC-AGGCC-------ACTAGTTCT---TGAGACTTCC---TTCGACCAAT-CGTGAATATCGGCATcgataatttagttcattttt
gi|6 : -AATCCACTG-GGACATA-----CATTTA--TT--ATTGTTTTAAAAAAGAGA-TCTCCGTTC----GTTTTTCTCA-CCCCTACATACA--ATGC------TTTC-AAAT-----------------GACTAGTTCT---TGAAACTTCC---TTCGGACAAT-CGTTAATGTCGGCATTTACACGCAA-----TTTAGTCT-CTTATAAA-A-----AAGT-ATCTTAAACATGTTAC-------------GAAC-----------TTTTGT-------TGTATTTGCCGTTAC-------CTTACTTGCTAGAAGATCATTAATTTCTTCCGAGCAGGGAAGATGATGCCTAACCGACATTGTTTATGTATGACGTCAGC----TT--ACGTATTTCGT---T-C--GCTTCTCTCGGGTGTTTTTTGTTCAAaaacgc
gi|7 : taattATTCGGTTA-------AACAAATTATCAAACAAACTTTTTACTTGAT-----TT-----------AT---------TTTGTAACAA-TAATTCAATTAT-----GGAGAATGT-TAGA---TG-AATA-TTAAAGTAAGCTAC-----CATCTGCAAT-AAGTATCACAT-AC-AT-AAAAAAT-GATTTTCAAGG-CAGAATTTACACGGTTTA------------------------------------CA---CTG----CATTGTTGTCATTTCTGAAAGG-AA-ATGTTGATGGTGACGTCACAAATGTCAGCGACATT--TGGTCCAGAc
gi|8 : atGTCTATATTCGGTTA----AACAATAAATTATACGGGAAA------------------------------------------TTTA-AAC---TAAT---GTTGTAATATGCGAAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-A--TTAATAAAAA-G--TTTCAAGC-TAGAAATTACA-AGTGTATTCAAAGCTTA-AAACTAGGCC-TAGTTGAA-----TA---CTGTGCACATCGCTGTTATTTCTGAAAGG-AA-ATGTTAATGGTAACGTTACAAATGTt
gi|9 : AT-CGTGAATGTCGGCATTTATACGTAA-----TTCGGTCT-CTTGTAAA---------GT-CTCTTAAACATTTCACTGATAATTTAGTTAA-C-----------TTTT-T-------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCACCGGAGCTGGGAAGATGAAACCTAACAGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---CGTCAGCTTCTCTCGGGAG-TTTTTGTTCA
blockSeqs : A ACT A T T A ATTTTATCGTATATTTATT A G AATAT C ATC A T . A C TC T TGAT AA T C A GA ACTAGGCC ACCTA TGCA G GAG A T T C A GCATC AT C G AA G AGTT T TG TCTCAG A A ATGGTAGGCCTGAAA C CAGATTTTCG T C G AAATC AG G GAA A ACTGATAATTTAGTTAAC G AATGGGG TTACGTG T TG TTAATTATG CGTCA T
blockSeqs : T A A C G G ATTGTAACTTCAGTTAT . A TAC . . . . . . . T A TAG G T . T T TC ATG . G TCA A T G . . TATT AT T G . . . . . . . A AAAAGCATA C TGAGACTTCC A . G . TA . AAA . ACTGATAATTTAGTTTG . . . A AG TTACG CT .
blockSeqs : A A A T G C CTTTTTACTTGATTTAT . T TAT . . . . . . . T T TAA A T . T A C CTA . . TC A C C . . T . T G . . . . . . . T ACGCTACA T TGAAACTTCC C . A . TA . AA . ACGAAC . . . A AG TTACG TT .
blockSeqs : . A A T G ATCAT . A T . . . . . . . T T TAG A T . T C C ATG . . GA C T C . . . . C T . . . . . . . T GCAGGCC C TTTTTTATG C . G . CG . AA . CAC . . . A AG TTACG TT .
blockSeqs : . A T C ATCTT . A . . . . . . . . T T TG G T . T A C ATA . . AA . . . . . . . . . . . . . . . . T . C . . . G . . . . . . A G A TT .
blockSeqs : . A T A . . A . . . . . . . . T A AG C . . . A A ATA . . AA . . . . . TC .
blockSeqs : . G . . . . . . . . C T G . . . . . CA .
blockSeqs : . . . . . . . . . T G
blockSeqs : . . . . . . .
blockSeqCons : A** TA*** ***** TAG** C******** ATA******** T** ** ANAGGCCACA****** CGAAACTTCC****** AA******* ACGAAC************************ TTACG****** TT******
originalCons : NNAGTCTNCACTCGGTTACTTAAACAACAANTTATNAGGGAAA-----------AT-----C------------AT---------TTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAAT-G--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA---TCTA---CTG----CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA-GG-AGGCCT--A-AGACTAGTTCT---TGAGACTTCC---TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAA-A-----A-GT-CTCTTAAACATTTCAC-------------GA-C-----------TTTT-T-------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
finalCons : NNAGTCTNCACTCGGTTA--TAAACAACAANTTATNAGGGAAA-----------AT-----C------------AT---------TTTGTAACAA-TAATTCAGTTATTA---GCAGAATGG-TAGA---TG-AATA-TTAAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAATAG--TTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AAC--------TAGTTGAATA--------CTG----CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATCT--GATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTA--TTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCANAGGCCACA------GACTAGTTCTCGAAACTTCC------TTCGAACAAT-CGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAAAA-------GT-CTCTTAAACATTTCACGAAC------------------------TTTT-T-------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGCTTACG------TATGACGTTT------GCTCCTCTCGGGAG-TTTTCGTTCAA
Alignments
lowQualScore : 33333 777777777777777777777777777777777777777777 44444 11111 1 11 222222222 11111 1111 1 111 4444444444444 1111 111111 5555555555555555 222222222 1111 11111 11 11111 9999999999999999999999999999999999999 2222222 11111111111 11111111
lowQualScore : 1 66666 1 1 1 222222222222222222222222222222222222222222 0 5 1 88888 4 777 4 4 00000 4 4 8888 0 2 77 1 5 0 00 00 444444444 99999 888 0000 1 6666 0 3 000 0 5 6 6 4444444444444 3 2 99 6 4444 6 99 999999 6 1 1111111111111111 444444444 2222 1 1 66666 00 6 1 6 6 66666 6 2222222222222222222222222222222222222 0 1111111 1 0 11 88888888888 22222222 5 0
lowQualScore : . ..... . . . .......................................... . . . ..... . ... . . ..... . . .... . . .. . . . .. .. ......... ..... ... .... . .... . . ... . . . . ............. . . .. . .... . .. ...... . . ................ ......... .... . . ..... .. . . . . ..... . ..................................... . ....... . . .. ........... ........ . .
lowQualScore : 0 55555 0 3 0 444444444444444444444444444444444444444444 9 0 1 22222 4 888 4 0 00000 0 0 5555 5 9 22 4 0 1 44 44 555555555 44444 888 6666 4 9999 6 2 888 3 2 7 7 3333333333333 7 5 22 7 2222 7 22 222222 7 0 2222222222222222 888888888 7777 4 7 77777 00 7 7 7 7 77777 7 7777777777777777777777777777777777777 8 7777777 7 7 00 11111111111 00000000 7 7
consensus : NNAGTCTNCACTCGGTTA--TAAACAACAANTTATNAGGGAAA-----------AT-----C------------AT---------TTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATATT-AAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAATAGTTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA-----TA---CTG----CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTAATTTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA---C---AGGCC--A-AGACTAGTTC---TCGAAACTTCC---TTCGAACAATCGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAA-AA-G-----T-CTCTTAAACATTTCAC-GAT---------AACTT--TT-T-------------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
Reference ( family-980 ) : NNAGTCTNCACTCGGTTA--TAAACAACAANTTATNAGGGAAA-----------AT-----C------------AT---------TTTGTAACAA-TAATTCAGTTAT--TA-GCAGAATGG-TAGA---TG-AATATT-AAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-AT-TTAAAAAAATAGTTTCAAGG-TAGAAATTACA-AGTTTATTCAAAACTCG-AA-------C-TAGTTGAA-----TA---CTG----CATCGCTGTCATTTCTGAAA-G-NA-ATGTTAATGGTAACGTTACAAATGTCAGAGAAATC--TGATCCAAAATTAAGG-AATCCACTG-AAACATA-----CATTTA--TTCGAGTGTTTTAAAA--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAANCA---N---AGGCC--ACAGACTAGTTC---TCGAAACTTCC---TTCGAACAATCGTGAATGTCGGCATTTACACGTAA-----TTCGGTCT-CTTGTAAA-AA-G-----T-CTCTTAAACATTTCAC-G-----------AACTT--TT-T-------------TGTCTTTGCCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAGATGAAACCTAACCGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---T-T--GCTCCTCTCGGGAG-TTTTCGTTCAA
gi|1 : AGTCTTCACTCGGTTACTTAAACAACAATTGAACAGGGAAA-----------AT-----C------------AT---------TTTGTAACAG-TAATTCAGTTATA-TATGCAGAATGG-TAGA---TG-AATATT-AAAGTGAGCTATGCATGCATCTGCAAT-AAGTATCCTAG-AT-TTAAAAAAATA-TTTCAAGG-TACAAATGCCA-AGTTTATTCAAAACTCG-AA-------TATAGTTGAAGCTCCTAGATCTA----TATCACAGTCATTTCTGAAA-G-AA-ATTTTAATGACAACGTTACAAATGTCAGAGAAACCAATGGTCCAAAATTAAGG-AATCCACTG-AAACATC-----GGTTTAATTTCGAGTGTTTAAAAG--GAGA-CCTCCGTTA----GTTTTTCTCG-CCCCAACATAAA--ATGC------TTTC-AAAACA---CGGTAGGCCT-ATAGACTAGTTTAAAT-GAGACTTCC---TTCGAACAATCGTGAATATCGGCATTTACAGGTAA-----TTCAGTCT-CTTGTAAA-AA-AAATAAT-CTCTTAAACATTTCAC----------------TT--GC-T-------------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCATCGGAGCTGGGAAACTTAAACCTAACCAACATTGTTTACGTATGACGTCAGC----TCAAAC-TATGACGTAACT-T--GCTTCTCTCAGGCG-TTTTCGTTCAA
gi|10 : atAGTCTACACTCGGGT---TAAACAACAATTTATATGGGAAA-----------AT-----C------------AT---------TTTATAATAA-TAATTCAGTTAT-----GCTGAATGG-TAGA---TG-GATATTTAAAGTGAGCTGC-----CATCTGCAAT-AAGTATCCTGA-AT-TTAAAAAAATAGTTTCATCG-TAGAAATTACA-AGTTTAATCAAAACTCGAAA-------C-TA---GAACC---TA---CTG----CATCGCTGTCATTT
gi|11 : g-----------AT-----C------------TT---------TTTGTATCAA-TAAATCAATTAT-----GCAGGATAGCTGCAATCTG-AATATT-AAAGTGATTTAC-----CATCTGCAAT-AAGTATCACAG-AT-AAAAACAAATAATTCCAAG
gi|12 : ttcggggttaatctcacaatatcggaaaaacatcataattattttAAACAACAACTGATGATGGAAA-----------AT-----TGTAACTTCAGTTAT---------TTTGTAACAA-TAATTCATTTAT--T---CGGAATGA-CAAA---TG-AATATT-AAAGTGCGCTAC-----CATCCGCAAT-ACGTATTACAG-A--TTAAAAGA--AGTTTCAAGA-TA
gi|13 : cggccTTGCCGTGTT-------CTTACTTGCGAAAAGATCGGTAATTTCATCGGAGCTAGGAAGATGAAACCTATCTTGCATTGTTTTTGTAT-------------------ATATGACGT---C-T--GCTCCTCTCGGGAA-ATTTTGTTCa
gi|14 : ------------AT---------TTTGCAACAAATAATTCAATT----TACGCAGAATGG-TAGG---TGAAATATT---AGTGAGCTAC-----AA-CTGCAGTAAAATATCACAG-AT-T--AAAAAATgt
gi|15 : aatcatacaaatttatGTATACATATGACGCCTGC----TT--ACGTGTGACGT---T-T--TCTCCTCTTGGGAG-TTTTgtacaaatttc
gi|16 : GTCTTCACTCGGTTACTTA---AACAATTGATCAGGGAAA-----------
gi|17 : cataatggcGAAAATCGTTAATTTCATCGAAACTGGAAAGATGAAAC
gi|2 : ATTCGATTA----AACAGCAAATTATGAGGGGGA-----------ATTTTATC------------GTATATTTATTTTTGCATCAA-TAATTCAATTAT-----GCAGAATGG-TGGA---GA-AATACT-ATAGTAAATTTT-----CCTCTGCAAT-CATTTTCATGG-AT-ATAAACAAATAGTTTCAAAAATAGAAATTACA-AGTTTATTCCAAATTCT-AA-------C-TAGTTGAA-----TG---CTG----CATCGCTGTCATTTCTAAAA-A-TC-ATGTTTATGGTGACGTTAGAAATACCAGAAAAATT--TGATTCAAGATTAGAG-AATCCACTA-AAATATA-----C----A--TGCGAGTGTTTTAAAA--GAGA-CATCCGCTA----GTTTTTCTTG-CCCCAACATAAA--ATGT------TTTC-AAAACA---C-----GCT--ACAGGCTAGTTC---T-GAA----CA---TTC-------CATGAATGTCGGTAATTACGCGTAAAAATCTTAGGTCC-CTTGTAAA-AA-G-----T-TTCTTTAGCATTACACTGAT---------AATTTAGTT-TGTTTTTAATGGGGTGTCTTTGCTGTATC-------CTTACTTGCGAGAAGATCGTTAATTTCATCGAAGCTGAGAATATG-CATCTATCCGACATTGTTTACGTATGACGTCG--------------ATGACGT---T-T--GCTCCTCTCGGTAG-TTTTCGTTTAA
gi|3 : tA-AGTTTATTCAAAACTCA-AAT------C-TAGTTGAC-----TA---CTG----CATCGCTGTCATTTCTGAAA-G-GAGATGTTAATGGTAATGGTACAAATGTCAGAGAAGCC----AT--AATATTAAGGCAATCCACTGAAAACATAT----CATCCA--TTTGA----TTTAAAG--GATAGTCTCCGTTAAGTTGTTTTTCTCGTCCCCAACATCAATGATGC------TTTCAAAAACATGGT---AGGCCTGAAAGAC-AGTCC---TCAGATTTTCG---TTTGAAAAA-----AAT------ACTGAAATGTGG-----TT--GTCTGAATGTAAAGAA-G-----T-CTCTTAAACATTTT-C--------------ACTT--TT-T-------------TGTC-TTGCCGTGCCTTACGTGCTAACTTGCTAGAAGATCGTTAATATCATCAGAGCTTGGAAGATGAAATCTAACCGATATTGTTT-------ATGTCAGCTTAATT--ATGTATAACAT---T-T--GCTTCTCTCAGGAT-TTTTTGTTAAAc
gi|4 : ATT-AAAGTGAGCTGC-----CATCTGAAAT-A--TAT-ACAACATCTTAAAAAGA---------------AAAT-----AGT-----CAAAACTTC-AA-------C-TAGTTGAA-----TG---CTG----CATCGCAGTAATATCTAAAA-GTCA-ACGTTTACGATAAACTTAC------CAGAGAAATC--TGATGTAAAATTAAGA-AATGCGATG-AAACATAGCATCCATTTGATTTTGAGTGTTTCTGAA--GAGA-TTATCGTTC----GTTATTCTTG-CCCCAAC----A--ATAT------TTTC-AAATCA---A---AAG-C--ATATATT--TTT---T-----TTTTTATGTTAGAACCATCATGAATGTCGGATTTTACACGTAT-----TTTAGTCT-CTTGTGAA-AA-G-----TATTAGTAAGTAGTTCAC-c
gi|5 : AT--TATGCAGAGTGA-TAGA---TG-AATATT-AAAGTAAGCTAT-----CATCTGCAAT-AAGTCTCCTAG-AT-T-AAAAAAA-AGCCTCAAGA-AAGAATTTACA-GGTTTATTCAAAACACA-AA-------A-CAGTTGAA-----TA---CTG----CATCGCTGTCATTTCCG--A-G-GA-ATGTCAATGGCAACGTTGCAAATGTCCG---------CGTTCCAAAATTAAAA-AATCAACTA-AAACATATATT-CATTTAATTTCGAGTGTTTTAAAA--TAGA-CCTCGATTA----GTTTTTCTCG-CCCCAACATAAA--ATACTCTCAGTTTC-AAATCG---C---AGGCC------ACTAGTTC---TTGAGACTTCC---TTCGACCAATCGTGAATATCGGCATcgataatttagttcattttt
gi|6 : -AATCCACTG-GGACATA-----CATTTA--TT--ATTGTTTTAAAAAAGAGA-TCTCCGTTC----GTTTTTCTCA-CCCCTACATACA--ATGC------TTTC-AAAT-------------------GACTAGTTC---TTGAAACTTCC---TTCGGACAATCGTTAATGTCGGCATTTACACGCAA-----TTTAGTCT-CTTATAAA-AAAG-----T-ATCTTAAACATGTTAC-G-----------AACTT--TTGT-------------TGTATTTGCCGTTAC-------CTTACTTGCTAGAAGATCATTAATTTCTTCCGAGCAGGGAAGATGATGCCTAACCGACATTGTTTATGTATGACGTCAGC----TT--ACGTATTTCGT---T-C--GCTTCTCTCGGGTGTTTTTTGTTCAAaaacgc
gi|7 : taattATTCGGTTA-------AACAAATTATCAAACAAACTTTTTACTTGAT-----TT-----------AT---------TTTGTAACAA-TAATTCAATTAT-----GGAGAATGT-TAGA---TG-AATATT-AAAGTAAGCTAC-----CATCTGCAAT-AAGTATCACAT-AC-ATAAAAAATGATTTTCAAGG-CAGAATTTACACGGTTT-------------------------------A-----CA---CTG----CATTGTTGTCATTTCTGAAAGG-AA-ATGTTGATGGTGACGTCACAAATGTCAGCGACATT--TGGTCCAGAc
gi|8 : atGTCTATATTCGGTTA----AACAATAAATTATACGGGAAA------------------------------------------TTTA-AAC---TAAT---GTTGTAATATGCGAAATGG-TAGA---TG-AATATT-AAAGTGAGCTAC-----CATCTGCAAT-AAGTATCACAG-A--TTAATAAAA-AGTTTCAAGC-TAGAAATTACA-AGTGTATTCAAAGCTTA-AAACTAGGCC-TAGTTGAA-----TA---CTGTGCACATCGCTGTTATTTCTGAAAGG-AA-ATGTTAATGGTAACGTTACAAATGTt
gi|9 : ATCGTGAATGTCGGCATTTATACGTAA-----TTCGGTCT-CTTGT--A-AA-G-----T-CTCTTAAACATTTCACTGATAATTTAGTTAACTT--TT-T-------------TGTCTTTGTCGTGCC-------CTTACTTGCTAGAAGATCGTTAATTTCACCGGAGCTGGGAAGATGAAACCTAACAGACATTGTTTACGTATGACGTCAGC----TT--ACGTATGACGT---CGTCAGCTTCTCTCGGGAG-TTTTTGTTCA