lowQualScore : 111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111 11111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333333 11 44444444 222 111 555555555555555 44444444444 1 11 1 33333 11 1 1 2222222 11 11 444444 11 000000000000000 1 2222 1 2 1 1 11 1 99999999999999999999999999999 2222222 1 33 6666666666666666 1 444444 1 1 1 11 333 2 1 8888888888888888888888888888888 1 11 1 11 66666666 1 222 222222 222 2222 111 1 55555555555 1 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 11 11 1 22222 55555555555555555555555 2222 22 6666666666666666 11 1 222222222222 1111111 44444444444444444444444444444 11111 11111 444 4 4 22 55 4 000000000000000000000000000000000000000000000000000000000000000000 4 6666 2 22 4 22 222 22
lowQualScore : 4 6 6 2 8 3 7 7777777 1 88 6 11111111 666 444 666666666666666 11111111111 3 5 88 7 55555 44 6 3 3 3 6 0 4444444 88 6 55 555555 88 3 777777777777777 3 1111 3 6 3 3 88 3 0 44444444444444444444444444444 8888888 3 9 11 5555555555555555 3 222222 3 3 3 6 7 88 111 6 6 2 5555555555555555555555555555555 1 6 33 0 33 33333333 0 000 2 888888 7 333 0 77 7 3 8888 4 444 88 0 77777777777 3 3 0 2 2 2 33 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 99 2 33 4 2 0 33333 00000000000000000000000 6 8888 6 6 6 22 5 8888888888888888 00 3 333333333333 0 888 5 6666666 55555555555555555555555555555 00000 4 6 6 55555 6 888 0 6 0 11 55 0 222222222222222222222222222222222222222222222222222222222222222222 6 0 6 0000 0 44 3 0 77 2 111 2 77 6
lowQualScore : . . . . . . . ....... . .. . ........ ... ... ............... ........... . . .. . ..... .. . . . . . . ....... .. . .. ...... .. . ............... . .... . . . . .. . . ............................. ....... . . .. ................ . ...... . . . . . .. ... . . . ............................... . . .. . .. ........ . ... . ...... . ... . .. . . .... . ... .. . ........... . . . . . . .. ..................................................................................................................................... . .. . .. . . . ..... ....................... . .... . . . .. . ................ .. . ............ . ... . ....... ............................. ..... . . . ..... . ... . . . .. .. . .................................................................. . . . .... . .. . . .. . ... . .. .
lowQualScore : 0 7 7 5 4 3 3 7777777 0 33 7 77777777 777 000 222222222222222 33333333333 0 5 33 3 00000 33 7 3 3 7 7 7 3333333 33 0 00 000000 33 0 555555555555555 3 7777 3 7 3 3 88 2 0 99999999999999999999999999999 7777777 3 0 00 7777777777777777 3 333333 3 3 3 7 0 33 555 7 7 0 3333333333333333333333333333333 0 0 88 0 88 55555555 0 888 2 888888 3 333 7 77 3 7 3333 2 555 00 0 88888888888 5 2 0 0 0 5 88 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 55 5 88 0 0 0 88888 55555555555555555555555 7 7777 7 7 7 33 2 7777777777777777 22 0 000000000000 8 888 0 2222222 55555555555555555555555555555 22222 8 7 7 88888 0 000 0 0 0 00 00 0 000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0000 0 00 0 0 00 5 555 5 00 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCCCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAA--TAAANNCTGACAGCACTACGTTTAACGAGTGC-AGTGTAAAAAGGAAACAT-CAA-TTT-CAATTTTGACTAC--TGTATTATTC----CATGTACGA-CTTAGTGAACT-TT-CATTTTCACTTTNTCACAGAGC--GATT-GCATTA--TGGAA-TTCATGTTGACAGAG---G-ATATTTCAA--ATCTCATTACGCAAAAANAAAAAAANNAAATACCCGT-GTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTTC-GGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATCGTCAAA-ATAAATTA-TGAATGC----ATACG-------TTTCT-ATGTTTTCTT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCCATCTACTAA--CAGTCCTNACTCAACAACCATGAA-ATAACTTTAGAAAGTCGTCATACGAAT-----C------AAAATNA----T--T----TTGCCAA-GT--CA-GTG--TTTCAAGTTC-C--AGG-TAT-T-TTACGG------TTGAGAAAT---GAGCGCTGACCTCNTTG----ACCCTACGAAT-ATTTACT-TAAAA-TCAG-CAGAATCATAAG-TAGAATAATNAT--TTGTTATA---A-----TTTTG-----T-AAAAA--------NATTTA--CCA--------CGGTTACAG--TTTGCATCGC-TC--TA-TACCGGGCGCGCA----CTTTT---C--TTTG----ATCA--A-TA--TTTC-GACTTTCGGCACT--TTTCCTNTTG-CCAGGT----GTCGTGTTTGTG-------GG--------------CACACAAATT-GG-TT-ATGT-T-TTATCT-GTTTTNGTTTGATGGAA------CG------TGTCAANCGGCGACAAACACATCATCA-T---------TTAG---G-AAAAT-------CATTGCTGCAGTG-AAT-----CT-A--A--C-ACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATTTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATATCCATCCC--ACTTTGGACACTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTATGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCGGTAATCTTTGACTANGTANTCCGCGGTAATNTTTCACTAAACATTTTTGNAGAAATATTAAATTCTAAACNATTNCAGTACAAGA
Reference ( gi|1 ) : AACAAAAAAATTCTGATCATTAGAAAAGTTCTCATGTACTTTACTATTTTTATGTAATAAGAATACATGTTCATGCAAGTCATCACAAAACATGTACACATACCGTATTCG-TCCTATTG-GGCGCCACGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATACT--CCTCTA------C-GCCATGAA--AAAAATTTGACAGCACTACG-TTAACGAGTGTGAATGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGCATTATTC----CATGTACGA-TTTAGTGAACT-TT-CATTTTCACTTTCTCACAGGGC--GATT-GCATTA--TGAAATTTCATGTTGACAGA----G-ATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAACAAAAAAAACGT-GTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTTG-GGTAGG-TCAGTGGG------GGTTT-------TTTTTGCATAAGGGA--TATTAAATTGTCAAA-ATGAATTAATGAATGC----ATACA-------TTTCT-ATGTTTTCTTTAATA-CAAGTAC-CTATTATG-TTTGCTCTTGCAATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-----C------AAAATCA----T--T----TTGCTAATGT--CA-GTG--TTTCAAATTTAT--AGG-TAT-T-TTATGG------TTGAGAAAT---GGGTGCTGACCTCCTTG----ACCCTGCAAAT-ATTCGCT-TAA---TCAG-CATAATCATAAG-TAGAGTGATGAT--TTGTT------------TTTT------TCAAAAA--------TGTTTA--CCA--------CATTTACAG--CTTGCAT-GC-TC--T--TACCGAGCGTGCA---GCTTTTAAACA-TTTA----ATCAATA-TAAATTTC-GACTTTTCGCACT--TTTCCTTTCG-CCAGGT----GTCGTATTTGTG-------GG--------------CACATAAATT-CA-TT-ATAT-T-TTATCTTGTTTTCGTTTGATGGAA-ATTAACGAAGCT-TCTCAAATGGCGACATACACATCATCG-T---------TTAG---G-AAAAT-------CATT----------AGT-----CT-A--A--C-ACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTATAGTAAT-ATGCGTAATTT-CCGAAATACACGGAATGT-GTACAATACGCATCCCCCACTTTGGAC-CTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGC--AGTTTGTGTGTATAATA-CGCAGCAAAAGAATTGATCGA--CCGTAATCTT-GACT-TATAATCCGCG-TAATTCTTCACTAAATATTTTTGCAGAAATATTCAATTCTAAACCATTATAGTACGAGA
gi|21 : ACTTACCGTATTCG-TCCTATTGAGGCGGCCCGGGCGCT
gi|22 : tgATACCGTATTCG-TCCTATTG-AGCGCCAC-GGCGCTT
gi|2 : TACCGTATTCG-TCCTATTG-AGCG-CGGGGGCGCTTag
gi|24 : tTACCGTATTCG-TCCTATTG-AGCGCCCCGGGCGCaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaatgctgttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|5 : CGTATTCG-TCCTATTG-GGCGC
gi|9 : CGTATTTGGTCCTATTG-GGCGCCCCGGGTGTTttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatgaattttcaaagaagtatatgatcctctagatctacgccatgaatgaaatctgacagcactacgtgtataaacaggaaactttgactacactgtattattccatgtacgacttagtgaactttcattttcattttctcacagagcgattgcattatggaatttcatgttgacagagatcgatatttcaaatctcattacacaaaaaaaaaaaaaaaaaatacccgtgttcccgctaatatattgaatataaataggtttgataggtcagtggcttgaaagacaatcgtcaaaataaattatgaatgcatatatacatttctatgttttctttatacaagtacctattatgtttgctcttgccatctactaaca
gi|2 : CTAAAATTGAATTTTCAAAGAAGTTAT---ACATGCTACCTTCTA------CGGCCATGGATTAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcatataatattaattttcaaagagttctatatactccttactccatgaataaatactgacagcactacgtttaacgagtgcgagtgtagaacaggaacatcaatttcaa
gi|5 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTAAAAT-GAATTTTCAAAGAAG---T---ATATGAT--CCTCTAGATCTAC-GCCATGAA--TGAAATCTGACAGCACTACG-T------------GTATAAACAGGAAAC---------------TTTGACTACACTGTATTATTC----CATGTACGA-CTTAGTGAACT-TT-CATTTTCATTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAGATCG-ATATTTCAA--ATCTCATTACACAAAAAAAAAAAAAAAAAATACCCGT-GTTCC--C-GC-TAATATA-TTGA-ATAT-AAATAGGTTT-GATAGG-TCAGTGG---------------------CTTG----AAAGA--C----AATCGTCAAA-ATAAATT-ATGAATGCATATATACA-------TTTCT-ATGTTTTCTTT-ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCCATCTACTAA--CAtgctgttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|9 : cgtattcgtcctattgggcgcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAATAT-TAATTTTCAAAGA-G---TTCTATATACT--CCT-TA------C-TCCATGAA--TAAATACTGACAGCACTACGTTTAACGAGTGCGAGTGTAGAACAGGAACAT-CAA-TTT-CAA
gi|13 : cgtatttggtcctattgggcgccccgggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcataAGTGT-AGTGTTAAAAGAAATCATTCAACTTTTCAATTTTG-CTAC--TGTATTATTC-----ATGTCCGA-CTTGGTGAACT-TTTCATTTTCACTGTATCA--AGGC--GA-----ATTAAGTGGA--TTCATGTTGATAGA----GGATATTTCAA--ATCTCATTTGGCAAAAA
gi|2 : TGC--TG--TTATTCTTCGCATGTACGAGTTTA-TGAACTCTT-CATTTTCACTTCTCCACAGAGCTTAATTTGCATTA--TGGAAATTCATGTTGACAGAA---G-ATATTTCAACCGCTTCATTACGCAAAAACA------CT-------CGTTGTTCCTCC-GC-TAATATGGTTGA-ATATGAAATAGGTTTCGGTAGG-TCAGTGGGTTTTATGGTTTGTTATTCTTTTTGGATAAGGGA--TATTGAATTGTCAAA-AATAATTA-TGAATGC----ATACGAATACACTTTCTCATGTTT------ATA-CAAGTAC-ATATTGTG-TTTGCTCTTGCAATCTACTAA--CAGTC--TACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAATCAAACC------AAAATTA----T--T----TTGCTAAAGT--CA-GTG--TTTCAAGT---T--AAG-TAT-T-TTACGA------TTGAGAAAT---GGGGGCTGACCTCTTTG----ACCCTGCAAAT-ATTCACT-TAA-----A-----------AAG-TAGAGTGATGCT--TTGTT------------CTTT--------AAAAA--------AATTTA--CCA--------CAGTTACAG--CTTGCAT-GCGTC--T--TACCGAGCGTGCA---TCTTTTCAACATTTTATTTTATCAATATTAAATTTCGGACTTCTCGCACT--TTTCCTTTCGCCCAGGT----GTCGTATTTGTG-------GG--------------CACATGTATTGCGCTT-ATAT-TATTGTCTTGTTTTCGTTTGATGGA-----AACG------TCTCAAATGGCGACATACACATC-TCG-T---------TTTG---GAAAAAT-------CATTGCTGCAGGCGAAT-----CT-AACA--C-ACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--
gi|8 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaaT-GTTCC--CTGCCTAATATGCTTGATATAT-AAATAGTTTC-GG-AGGCTCAGT----------GTTT-------TTT
gi|8 : ccgtG-GGTGGG-GGGG-GGG------GGTTA-------T------ATAAGGGAAGTATTGAATTGTCAAATATAAATTA-TGAATGCC---AT-TA-------TTTCG-ATGTTTTCTT--ATATCCTGTACGCTATTATGGTTTGCT-TTGTCATCTACTGATACAGTCCTAACTCAACAACCATGAAGATAACTTTA-AAAGTCGTAATACGAAT-----A------AAAAACAAAAGTTAT----TTGCCAA-GTCCCACGTGGTTTCCAAGTTC-----GG-TAT-T-TTACGG------TTGAGAattcttaatgttttggggggtggggggggggggttatataagggaagtattgaattgtcaaatataaattatgaatgccattatttcgatgttttcttatatcctgtacgctattatggtttgctttgtcatctactgatacagtcctaactcaacaaccatgaagataactttaaaagtcgtaatacgaataaaaaacaaaagttatttgccaagtcccacgtggtttccaagttcggtattttacggttgaga
gi|4 : ccgttgttccctgcctaatatgcttgatatataaatagtttcggaggctcagtgttttttattcttaatgttttgggTCCACAAC-ATGAACATAACTTTTAGAAGTTGTCATACAAAT-----CCAAAACAAAATAA----T--TATATTTGCCACTGT--CA-GTG--TTTCAG--TTACCCAGG-TAG-GATTGTGGGATCACTTGGATCATTCAGAGTCATGACCTCAATT----ACCCTACGAATTGTTTACT-TAAAATCCAGGCAGAATCATA-G-TAGAATAATTAT--TTGTTATACATAA----TTTTGTGTAATTAAAAA--------CACTTAAATTATATACGGCCGTTTACAG--TTTGCATTGC-TCCAT--TACTG------------CTTGTA--C-----------TCA--------TTTC-GACTTTCGGCACTCTTTTCCTATTG-TCAGGT-----TCATGTTTGTA-------GATTTGGTAAGAATGCCACACAAATT-AG-TT-ATAA-T-TCAGCTA--TTTATTTTGGTGGAA------CG----TGTGTCAAACGGCGAC--ACACATCATCA-TTAAACGACATTAG---G-AAAAT-------CATTGCTGCACTG-AGTGAATCCT-A--ACGC-ACGATC-TTC-AATAAATCTGTTAGGTTA-
gi|7 : ttcatttttatctatatacattttgtcaagttaacttgtgacgtgcttttgtcaataaagcacttattatatactGT--CA-GTG--TTTCAAGTT-----AGGATATAC-TCACGG------TTGAGAA-T---GAACACTG-CCTCCTTGCCCCATCCTTCAAA--ACTTACTCTAAATATCAG-CATAATCATAAGTTAGAATAGTGAG--TTAT
gi|11 : aTACGAAT-TTTTACT-TAAAA-TCAG-CAGAATCTTAAG-TAGAATAATTATATTTGTTATAATAATTTGGTTTTAA----TAAAAAACACTAAATTATATA--CGG--------CAGTTCCAG--TTTGCATCGC-TC--TATTACTGGGCTTGC------------------------------A-TA--TTTC-GACTTTCGGCACT--TTTCCTAATG-TCAGGT----GTCGTGTTTGTA-------Gactacactctaatttgttaataccccccccccccccaaaaaaaaaaaccactacaggcttttcatcgctatgccggacgcgcatgtgctgtctttgatatttccgaccttggcattttccatttacaaagctttagtcaaatgtttgacaaaatggcacacaaattggttatacatttatcatttctagtttgatggaactttgtatcaaaactcaacaaacacatcataatctagaaaaaaaaacattgctgcagtgaatctaactacgatcataattgttagattagagtacaggaatgagtgttgaatcagag
gi|7 : A--CCA--------C---TACAGGCTTTTCAT--C-GC--TA-TGCCGGACGCGCATGTGCTGTC------TTTG----AT----A-T---TTCC-GACCTTG-GCA-T--TTTCCATTTA-CAAAGCTTTAGTCAAATGTTTGACAAAATGG--------------CACACAAATT-GG-TT-ATACAT-TTATCAT-TTCTAGTTTGATGGAA-CTT--TG------TATCAAAACTCAACAAACACATCATAA-T---------CTAGAAAA-AAAAA-------CATTGCTGCAGTG-AAT-----CT-A--A--CTACGATCAT-------AAT-TGTTAGATTA-GAG--T--ACAG
gi|10 : agtcagtgtttcaagttaggatatactcacggttgagaatgaacactgcctccttgccccatccttcaaaacttactctaaatatcagcataatcataagttagaatagtgagttatactacactctaatttgttaataccccccccccccccaaaaaaaaaa-------GA--------------CAAATAAATA-TG-CTGATGT-T-GTACCT-GTTTTGGTTTGATAGAA------CG----TGTGTCAACAGGCGAAAAACACGTCACCA-T---------TTAA---G-AAAAT-------CATCGCTGCAGTG-AAT-----CT-A--A--CCACGATCGGCC-AATAAAG-TGTTAGTTTA-GAGTAT--ACAGAAACGgaatgagtgttgaatcagag
gi|15 : ggcgaggtG--------------CGCACAAATT-GG-TG-ATGT-T-TTATCT-GTTTTTGTTTGATAGAACAT-------GC-----CAACCGGCGACAAGAACATTATCA-T---------TTTG---G-GAAAT-------CATgtgttgaactgagtggaggtatattttccaagatggcgactttcgtcccttgtattgatt
gi|16 : tttggcgggggtG--------------CACA-AACTT-GG-TG-ATGT-T-TTAT---GTTTTCGTTTGATAGAA-A------ATGC-----CAACCGCGGGCAAGAACATTATCATT---------TTTG---G-GAAAT-------CATcgcttcagagtgttgaacc
gi|14 : ggcgggggtcGCGAAAAACACATCATCA-T---------TTAG---G-AAAAT-------CATTGCTACGGGG-ACT-----AT-A--AC-C-ACGATCACTC-AATAAAT-ACTTAGTTTA-AAA--T--ACAGcgcttcagagtgttgaacca
gi|12 : aggtgtgttaatcaACACATCACCA-G---------TTAA---A-AAAATTCCGCTGCA-T----------AAT-----CTCA--C--C-ACGATCGGCCAAATAAAT-TGT--GTTTGCGAG--TCCACAGAgagttgttgttgaatccaacatgacgactttcgttttgt
gi|3 : gaaCAGAGGCGAATTCATTTAAGTTACAGTATTTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATATCCATCCC--ACTTTGGACACTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTATGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCGGTAATCTTTGACT-AATAATCCGCGGTAATATTTCACTAAATATTTTTGAAGAAATATTAAATTCTAAACCATTTCAGTACAAGAaaacggtgttgagactgagtggggttattttttccaagtggcgacctttcgtacccttgtattgattatt
gi|6 : -GACTATGTACTTTGCGGTAATT-TTCACTAAACATTTTTGCAGAAATA-TAAATTCTAAATAATTA-AGTACatttgcgaagtgcacagccaaattgtttagataacagtcgtcttgatttcctgtcgcagtcgctgatacccagcaggtatatcgtgttaatttcagcagagcacgagcttttgcagcatgtcagttttttaacagcttacttgataaattcctttgtaattgaaacttagaaacaagtcgatggtacaatatgacattaggcgttatattatgttggtactttttaaaaagtgtcggcaattatatagagcgtctagttggttaataacaatactctgaatactttagagaattacaccctctgaaatgtgttgcatgaaggttgtgtataccagtcgtttacagcaaaggcaagcactgcggaattgaggacacagcgataattt
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ACAAAATCCAATTCATCCTCAAAAAGGTCCAGAACTTGTGCATTTTTTACTTAAAACATTTTTCATGATTTGTGAAGAAAGCATGAGCAGAAGAATCCTTTGACATGAAATCA
Unaligned ( gi|18 ): TAGCCTTAGAACACAGAAACAGGTGTTGAATCGAGTGGGGGTATGTATATTTTCTAAGATGGCGATTTTCGTCCCTTGTATTCATATAATA
Unaligned ( gi|19 ): CGATTTGGGGAGATGACAAACAAATTGTTGATGTTGAATCCGTTTTTCGTTTCGTAGAACAGGTCGAAGATCGGGAACA
Unaligned ( gi|20 ): GTGTTGAACCAAGTGGGCGTACTTTGTCCAAGATGGCGACT
Unaligned ( gi|23 ): TGCTATTTTGTTACGAAATGTTTATGCTTCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2222222 11 222222 1 11 222222222222 22222222 11 1 11 1 1 11 111 11 11 2 2222 11 111111111111 2 11 1 1 2 1 1 11 1 55555555555555555555555555 11 1 1 4444444444444444 1 11111 1 1 1 11 333 2 4444444444444 2222222 2222 2 11 11 44444 333333333333 111 2222 1111111 111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1111 11 222222 333333333333333 222222222222222 111111111 22222 11111 11 1 1 22 1 8888888888888888888888888888888888888888888888888888888888888 1 11 1 222 1 11
lowQualScore : 1 5 5 0 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 3 6666666 33 2 888888 0 33 22 888888888888 44444444 7 33 0 22 0 1 0 0 1 2 7 33 000 33 33 0 0000 33 1 888888888888 0 0 33 0 0 0 0 0 00 3 0 22222222222222222222222222 3 2 33 3 0 2 0 1 0 5555555555555555 0 3 77777 0 0 0 2 2 33 111 2 0 6 2 7777777777777 6666666 1 3 1111 4 11 8 11 0 55555 8 000000000000 3 777 44 3 1 1111 2 88 8 6666666 5 1 0 8 222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 6 11 1 8 7777 11 333333 444444444444444 5 5 888 3 5 5 99999 1 5 666666666666666 66 777 1 4 777777777 4 777 0 9999 4 0 5 5 11111 5 888 5 5 5 11111 99 5 5 2 77 5 7777777777777777777777777777777777777777777777777777777777777 5 88 2 7 3 000 1 6 4 0 1 7 1 33
lowQualScore : . . . . . ............................................................................................................................ . . ....... .. . ...... . .. .. ............ ........ . .. . .. . . . . . . . .. ... .. .. . .... .. . ............ . . .. . . . . . .. . . .......................... . . .. . . . . . . ................ . . ..... . . . . . .. ... . . . . ............. ....... . . .... . .. . .. . ..... . ............ . ... .. . . .... . .. . ....... . . . . ... ...................................................................................................................................................................... . . .. . . .... .. ...... ............... . . ... . . . ..... . . ............... .. ... . . ......... . ... . .... . . . . ..... . ... . . . ..... .. . . . .. . ............................................................. . .. . . . ... . . . . . . . ..
lowQualScore : 0 7 7 7 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0000000 88 5 888888 0 88 00 111111111111 22222222 3 88 0 55 2 2 0 0 0 5 0 88 222 88 22 0 0000 88 0 333333333333 2 0 88 0 0 0 0 0 22 2 0 00000000000000000000000000 2 5 88 2 2 0 0 2 0 0000000000000000 0 2 88888 0 0 0 5 5 88 333 5 0 5 0 5555555555555 0000000 0 2 2222 0 00 0 00 8 44444 0 000000000000 2 555 55 2 0 2222 2 88 0 2222222 0 0 8 0 000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 4 00 0 0 0000 00 000000 888888888888888 0 0 222 0 0 0 22222 0 0 000000000000000 11 888 0 4 888888888 4 888 1 4444 4 7 7 7 66666 7 000 7 7 7 22222 55 5 5 5 55 5 5555555555555555555555555555555555555555555555555555555555555 5 00 5 3 3 333 0 7 0 7 0 3 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACGTT-AACGAGTGTGAGTGTAAAAAGGAAACAT-CAAC-TTTCAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAA-TTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA-AAAA-ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT------C------AAA-----A-TTATT----TTGCCAATGT--CA-GTG--TTTCAAGTT--C--AGG-TA---T-T------TTACGGTTGAGAAAT---GGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--T----ATAAT----TTTG--T----T----------------------AAAA------AAATT---TA------CCACAG----TTACAG--TTTGCATCGC-TCTATTACCGGGCGTGCA-C---TTTT---CA--------TTT-ATCAAT-----AT----TTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-T-G-TTTTCGTTTGATGG-AA-----C---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CT-A--AC-C-ACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATGTAATCCGCGGTAAT-TTTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
Reference ( family-93 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCCCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACGTTTAACGAGTGC-AGTGTAAAAAGGAAACAT-CAA--TTTCAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTNTCACAGAGC--GATT-GCATTA--TGGAA-TT-CATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAANAAAAAAANNAAATACCCGT-GTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATCGTCAAA-ATAAATTA-TGAATGC----ATACG-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCCATCTACTAA--CAGTCCTNACTCAACAACCATGAA-ATAACTTTAGAAAGTCGTCATACGAAT------C------AAA-----A-TNATT----TTGCCAA-GT--CA-GTG--TTTCAAGTT--C-CAGG-TA---T-T------TTACGGTTGAGAAAT---GAGCGCTGACCTCNTTG----ACCCTACGAAT-ATTTACT-TAAA-ATC--AGCAGAATCATAAGT-AGAATAAT--NATTTGT--T----ATAAT----TTTG-------T----------------------AAAA------ANATT---TA------CCACGG----TTACAG--TTTGCATCGC-TCTA-TACCGGGCGCGCA-C---TTTT---C---------TTTGATCAAT-----AT----TTC-GACTTTCGGCA--CTTTTCCTNTTG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TTATGT-T-TTATC-T-G-TTTTNGTTTGATGG-AA-----C---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATTGCTGC----A-GTGAAT-CT-A--A--C-ACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATTTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATATCCAT--CCCACTTTGGACACTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTATGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCGGTAATCTTT-GACTANGTANTCCGCGGTAATNTTTCACTAAACATTTTTGNAGAAATATTAAATTCTAAACNATTNCAGTACAAGA
gi|1 : ACATACCGTATTCG-TCCTATTG-GGCGCCACGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATACT--CCTCTA------C-GCCATGAAA--AAAATTTGACAGCACTACGTT-AACGAGTGTGAATGTAAAAAGGAAACAT-CAAC-TTTCAATTTTGACTAC--TGC-ATTATTC-CATGTACGATTTAGTGAACT-TT-CATTTTCACTTTCTCACAGGGC--GATT-GCATTA--TGAAA-TTTCATGTTGACAGAG----ATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAACAAAAAAAACGT-GTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-GGGTAGG-TCAGTGGG------GGTTT-------TTTTTGCATAAGGGA--TATTAAATTGTCAAA-ATGAATTAATGAATGC----ATACA-------TTTCT-ATGTTTTC-TTTAATA-CAAGTAC-CTATTATG-TTTGCTCTTGCAATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT------C------AAA-----A-TCATT----TTGCTAATGT--CA-GTG--TTTCAAATT--TATAGG-TA---T-T------TTATGGTTGAGAAAT---GGGTGCTGACCTCCTTG----ACCCTGCAAAT-ATTCGCT-TAA---TC--AGCATAATCATAAGT-AGAGTGAT--GATTTGT--T--------T----TTTT-------C----------------------AAAA------ATGTT---TA------CCACAT----TTACAG--CTTGCAT-GC-TCT--TACCGAGCGTGCAGC---TTTTAAACA--------TTTAATCAAT-----ATAAATTTC-GACTTTTCGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TATTTG------TGGG--------------CACATAAA-T-TC-A-TTATAT-T-TTATC-TTG-TTTTCGTTTGATGG-AAATTAAC---GAAGCTTCT--C---AAATGGCGACATACACATCATCG-T---------TTAGG-AAAAT---CATT--------------AGT-CT-A--A--C-ACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTATAGTA-ATATGCGTAATTT-CCGAAATACACGGAATG-TGTACAATACGCATCCCCCACTTTGGAC-CTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGTTTGTGTGTATAAT-ACGCAGCAAAAGAATTGATCGA--CCGTAATC-TT-GACT-TATAATCCGC-GTAATTCTTCACTAAATATTTTTGCAGAAATATTCAATTCTAAACCATTATAGTACGAGA
gi|10 : aacaaaaaaattctgatcattagaaaagttctcatgtactttactatttttatgtaataagaatacatgttcatgcaagtcatcacaaaacatgtacGA--------------CAAATAAA-TATG-C-TGATGT-T-GTACC-T-G-TTTTGGTTTGATAG-AA-----C---G-----TGTGTC---AACAGGCGAAAAACACGTCACCA-T---------TTAAG-AAAAT---CATCGCTGC----A-GTGAAT-CT-A--AC-C-ACGATCGGCC-AATAAAG-TGTTAGTTTA-GAGTAT--ACAGAAACG
gi|11 : ggcgaggtTACGAAT-TTTTACT-TAAA-ATC--AGCAGAATCTTAAGT-AGAATAATTATATTTGT--T----ATAATAA--TTTGGTTTTAAT----------------------AAAAAACACTAAATTATATA------CGGCAG----TTCCAG--TTTGCATCGC-TCTATTACTGGGCTTGC-------------------------------AT-----AT----TTC-GACTTTCGGCA--CTTTTCCTAATG-TCAGGT----GTCG--TGTTTG------TAGgtgttgaactgagtggaggtatattttccaagatggcgactttcgtcccttgtattgatt
gi|12 : AAACACATCACCA-G---------TTAAA-AAAAT---T-CCGCTGC----A--T-AAT-CTCA--C--C-ACGATCGGCCAAATAAAT-TGT--GTTTGCGAG--TCCACAGA
gi|13 : gAGTGT-AGTGTTAAAAGAAATCATTCAACTTTTCAATTTTG-CTAC--TGT-ATTATTC--ATGTCCGACTTGGTGAACT-TTTCATTTTCACTGTATCA-AG-GC--GA-----ATTAAGTGGA--TT-CATGTTGATAGAG---GATATTTCAA--ATCTCATTTGGCAAAAAaaacggtgttgagactgagtggggttattttttccaagtggcgacctttcgtacccttgtattgattatt
gi|14 : ---G-----TGT--T---AATCAGCGAAAAACACATCATCA-T---------TTAGG-AAAAT---CATTGCTAC----G-GGGACT-AT-A--AC-C-ACGATCACTC-AATAAAT-ACTTAGTTTA-AAA--T--ACAG
gi|15 : aggtG--------------CGCACAAA-T-TG-G-TGATGT-T-TTATC-T-G-TTTTTGTTTGATAG-AA-----C---A-----TGC--C---AACCGGCGACAAGAACATTATCA-T---------TTTGG-GAAAT---CATCGCTTC----A-Ggagttgttgttgaatccaacatgacgactttcgttttgt
gi|16 : tttggcgggggtGGT--------------CGCACAAACT-TG-G-TGATGT-T-TTAT----G-TTTTCGTTTGATAG-AA-----A---A-----TGC--C---AACCGCGGGCAAGAACATTATCATT---------TTTGG-GAAAT---CATCGCTTC----A-Gagtgttgaacc
gi|19 : ggcgggGA--------------CAAACAAA-T-TG-T-TGATGT-T-GAATC-C-GTTTTTCGTTTCGTAG-AA-----C---A-----GGT--CGAAGATCGGGAACAagtgttgaacca
gi|2 : cgatttggggagatTACCGTATTCG-TCCTATTG-AGCG-CGGGGGCGCTT
gi|2 : tCTAAAATTGAATTTTCAAAGAAGTTAT---ACATGCTACCTTCTA------CGGCCATGGATTAAAATGCTGaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaatgctgttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|2 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGC--TGTTATTCTTCGCATGTACGAGTTTATGAACTCTT-CATTTTCACTTCTCCACAGAGCTTAATTTGCATTA--TGGAAATT-CATGTTGACAGAA---GATATTTCAACCGCTTCATTACGCAAAAACA-------------CTCGTTGTTCCTCC-GC-TAATATGGTTGA-ATATGAAATAGGTTTCGGTAGG-TCAGTGGGTTTTATGGTTTGTTATTCTTTTTGGATAAGGGA--TATTGAATTGTCAAA-AATAATTA-TGAATGC----ATACGAATACACTTTCTCATGTTT-------ATA-CAAGTAC-ATATTGTG-TTTGCTCTTGCAATCTACTAA--CAGTC--TACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT------C------AAACCAAAA-TTATT----TTGCTAAAGT--CA-GTG--TTTCAAGTT-----AAG-TA---T-T------TTACGATTGAGAAAT---GGGGGCTGACCTCTTTG----ACCCTGCAAAT-ATTCACT-TAAA-----------------AAGT-AGAGTGAT--GCTTTGT--T--------C----TT---------T----------------------AAAA------AAATT---TA------CCACAG----TTACAG--CTTGCAT-GCGTCT--TACCGAGCGTGCATC---TTTT---CAACATTTTATTTTATCAATATTAAAT----TTCGGACTTCTCGCA--CTTTTCCTTTCGCCCAGGT----GTCG--TATTTG------TGGG--------------CACATGTA-T-TGCGCTTATAT-TATTGTCTT-G-TTTTCGTTTGATGGAAA-----C---G-----TCT--C---AAATGGCGACATACACATC-TCG-T---------TTTGGAAAAAT---CATTGCTGC----AGGCGAAT-CT-AACA--C-ACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--ttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|21 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaaACTTACCGTATTCG-TCCTATTGAGGCGGCCCGGGCGCT
gi|22 : tgTACCGTATTCG-TCCTATTG-AGCGCCAC-GGCGCTT
gi|24 : aTACCGTATTCG-TCCTATTG-AGCGCCCCGGGCGCag
gi|3 : CAGAGGCGAATTCATTTAAGTTACAGTATTTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATATCCAT--CCCACTTTGGACACTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTATGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCGGTAATCTTT-GACTAA-TAATCCGCGGTAATATTTCACTAAATATTTTTGAAGAAATATTAAATTCTAAACCATTTCAGTACAAGA
gi|4 : TCCACAAC-ATGAACATAACTTTTAGAAGTTGTCATACAAAT------CCAAAACAAA-----A-TAATTATATTTGCCACTGT--CA-GTG--TTTCA-GTTACC-CAGG-TAGGAT-TGTGGGATCAC--TTGGATCATTCAGAGTCATGACCTCAATT----ACCCTACGAATTGTTTACT-TAAA-ATCCAGGCAGAATCATA-GT-AGAATAAT--TATTTGT--TATACATAAT----TTTGTGTAAT-T----------------------AAAA------ACACT---TAAATTATATACGGCCGTTTACAG--TTTGCATTGC-TCCATTACT--GCTTGTA-C---T-------------------------C-----AT----TTC-GACTTTCGGCACTCTTTTCCTATTG-TCAGGT-----TCA--TGTTTG------TAGATTTGGTAAGAATGCCACACAAA-T-TA-G-TTATAA-T-TCAGC-T-A--TTTATTTTGGTGG-AA-----CGT-G-----TGT--C---AAACGGCGAC--ACACATCATCA-TTAAACGACATTAGG-AAAAT---CATTGCTGCACTGA-GTGAATCCT-A--ACGC-ACGATC-TTC-AATAAATCTGTTAGGTTA-atttgcgaagtgcacagccaaattgtttagataacagtcgtcttgatttcctgtcgcagtcgctgatacccagcaggtatatcgtgttaatttcagcagagcacgagcttttgcagcatgtcagttttttaacagcttacttgataaattcctttgtaattgaaacttagaaacaagtcgatggtacaatatgacattaggcgttatattatgttggtactttttaaaaagtgtcggcaattatatagagcgtctagttggttaataacaatactctgaatactttagagaattacaccctctgaaatgtgttgcatgaaggttgtgtataccagtcgtttacagcaaaggcaagcactgcggaattgaggacacagcgataattt
gi|5 : ttcatttttatctatatacattttgtcaagttaacttgtgacgtgcttttgtcaataaagcacttattatatactCGTATTCG-TCCTATTG-GGCGC
gi|5 : CTAAAAT-GAATTTTCAAAGAAG---T---ATATGAT--CCTCTAGATCTAC-GCCATGAAT--GAAATCTGACAGCACTACGT-------------GTATAAACAGGAAAC---------------TTTGACTACACTGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCATTTTCTCACAGAGC--GATT-GCATTA--TGGAA-TTTCATGTTGACAGAGATCGATATTTCAA--ATCTCATTACACAAAAAAAAAAAAAAAAAATACCCGT-GTTCC--C-GC-TAATATA-TTGA-ATAT-AAATAGGTT-TGATAGG-TCAGTGG---------------------CTTG-A-AA--GA--C----AATCGTCAAA-ATAAATTA-TGAATGCATATATACA-------TTTCT-ATGTTTTCTTT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCCATCTACTAA--CAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatgaattttcaaagaagtatatgatcctctagatctacgccatgaatgaaatctgacagcactacgtgtataaacaggaaactttgactacactgtattattccatgtacgacttagtgaactttcattttcattttctcacagagcgattgcattatggaatttcatgttgacagagatcgatatttcaaatctcattacacaaaaaaaaaaaaaaaaaatacccgtgttcccgctaatatattgaatataaataggtttgataggtcagtggcttgaaagacaatcgtcaaaataaattatgaatgcatatatacatttctatgttttctttatacaagtacctattatgtttgctcttgccatctactaaca
gi|6 : cgtattcgtcctattgggcgcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTAGACTATGTACTTTGCGGTAAT-TTTCACTAAACATTTTTGCAGAAATA-TAAATTCTAAATAATTA-AGTACA
gi|7 : A-GT--CA-GTG--TTTCAAGTT-----AGGATA---TAC------TCACGGTTGAGAA-T---GAACACTG-CCTCCTTGCCCCATCCTTCAAA--ACTTACTCTAAATATC--AGCATAATCATAAGTTAGAATAGT--GAGTTATACT----ACACTCTAATTTG-------TTAATACCCCCCCCCCCCCCAAAAAAA------AAA------A------CCAC-------TACAGGCTTTTCATCGC-T--A-TGCCGGACGCGCA-TGTGCTGT---C---------TTTGAT--AT------T----TCC-GACCTT-GGCA---TTTTCCATTTA-CAAAGCTTTAGTCAAATGTTTGACAAAATGG---------------CACACAAA-T-TG-G-TTATACAT-TTATC-A-T-TTCTAGTTTGATGG-AA-----CTTTG-----TAT--C---AAAACTCAACAAACACATCATAA-T---------CTAGA-AAAAAAAACATTGCTGC----A-GTGAAT-CT-A--A--CTACGATCAT-------AAT-TGTTAGATTA-GAG--T--ACAGtaaccaagaatttaaagaatttggctaattagttgtctgacttgtctacatcgcaggatacccacaggtgcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttgagtacaagttccgtactcggcaccgcaacctggaacatgcatattatttgtaaccgaccttgtacatgtcgtattaaaaatgatataggtctaattttgttttttgttcaataacagtacgtgaaaaatactttatggaagaaaagtgtgataccctctgatatttttattggcatgaggtaggtgtaaatcagcctttacagcaaaacacgcacgtgggaaatcaaggacatatcgcgttcaaatt
gi|8 : CCGTTGTTCC--CTGCCTAATATGCTTGATATAT-AAATAGTTT-CGG-AGGCTCAGT----------GTTT-------TTTgaatgagtgttgaatcagag
gi|8 : GGG------GGTTA-------T------ATAAGGGAAGTATTGAATTGTCAAATATAAATTA-TGAATGCC---AT-TA-------TTTCG-ATGTTTTC-TT--ATATCCTGTACGCTATTATGGTTTGCT-TTGTCATCTACTGATACAGTCCTAACTCAACAACCATGAAGATAACTTTA-AAAGTCGTAATACGAATAAAAAAC------AAA-----AGTTA-T----TTGCCAA-GTCCCACGTGGTTTCCAAGTT--C---GG-TA---T-T------TTACGGTTGAGAattcttaatgttttggggggtggggggggggggttatataagggaagtattgaattgtcaaatataaattatgaatgccattatttcgatgttttcttatatcctgtacgctattatggtttgctttgtcatctactgatacagtcctaactcaacaaccatgaagataactttaaaagtcgtaatacgaataaaaaacaaaagttatttgccaagtcccacgtggtttccaagttcggtattttacggttgaga
gi|9 : ccgttgttccctgcctaatatgcttgatatataaatagtttcggaggctcagtgttttttattcttaatgttttggggggtgggggggCGTATTTGGTCCTATTG-GGCGCCCCGGGTGTT
gi|9 : TAATAT-TAATTTTCAAAGA-G---TTCTATATACT--CCT-TA------C-TCCATGAAT--AAATACTGACAGCACTACGTTTAACGAGTGCGAGTGTAGAACAGGAACAT-CAA--TTTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcatataatattaattttcaaagagttctatatactccttactccatgaataaatactgacagcactacgtttaacgagtgcgagtgtagaacaggaacatcaatttcaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACAAAATCCAATTCATCCTCAAAAAGGTCCAGAACTTGTGCATTTTTTACTTAAAACATTTTTCATGATTTGTGAAGAAAGCATGAGCAGAAGAATCCTTTGACATGAAATCA
Unaligned ( gi|18 ): TAGCCTTAGAACACAGAAACAGGTGTTGAATCGAGTGGGGGTATGTATATTTTCTAAGATGGCGATTTTCGTCCCTTGTATTCATATAATA
Unaligned ( gi|20 ): GTGTTGAACCAAGTGGGCGTACTTTGTCCAAGATGGCGACT
Unaligned ( gi|23 ): TGCTATTTTGTTACGAAATGTTTATGCTTCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2222222 11 222222 1 11 1 111 1 11 1 11 1 1 11 111 11 2222 11 33333333333333 11 1 1 2 1 1 11 1 55555555555555555555555555 11 1 1 3333333333333333 1 11111 1 1 1 11 11 2 888888888888888 1 1 11 11 11 3333333 333333333333 11 1111 11 2222 11 11 66666666666666666666666666666666666666666666666666666666666666666666666666666 11 1 11 444444444444444444444444444444444444 1 11 1111 11 222222 333333333333333 1 11111 222222222 111111111 1 11111 11 1 1 11 1 8888888888888888888888888888888888888888888888888888888888888 1 11 1 111 111 1
lowQualScore : 1 5 5 0 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 3 6666666 33 2 888888 0 33 22 3 7 99 000 8 0 7 33 0 22 0 1 0 0 0 2 7 33 000 33 66 0000 33 55555555555555 0 66 33 0 0 0 0 0 00 3 0 22222222222222222222222222 3 2 33 3 0 0 1 0 7777777777777777 0 3 77777 0 0 0 2 1 33 88 2 0 6 000000000000000 0 0 33 9 11 8 11 0 7777777 000000000000 11 7777 22 00 2 3 0 1111 1 88 8 0 88 11 3 1 0 8 11 77777777777777777777777777777777777777777777777777777777777777777777777777777 5 8 11 3 8 99 0 1 000000000000000000000000000000000000 6 6 11 1 8 7777 11 333333 444444444444444 5 5 888 1 5 5 0 5 5 4 77777 000000000 66 777 1 4 777777777 4 777 0 99999999 5 0 888 5 5 5 11111 66 5 5 2 77 5 6666666666666666666666666666666666666666666666666666666666666 5 88 1 7 3 555 6 777 7 2
lowQualScore : . . . . . ............................................................................................................................ . . ....... .. . ...... . .. .. . . .. ... . . . .. . .. . . . . . . . .. ... .. .. .... .. .............. . .. .. . . . . . .. . . .......................... . . .. . . . . . ................ . . ..... . . . . . .. .. . . . ............... . . .. . .. . .. . ....... ............ .. .... .. .. . . . .... . .. . . .. .. . . . . .. ............................................................................. . . .. . . .. . . .................................... . . .. . . .... .. ...... ............... . . ... . . . . . . . ..... ......... .. ... . . ......... . ... . ........ . . ... . . . ..... .. . . . .. . ............................................................. . .. . . . ... . ... . .
lowQualScore : 0 7 7 7 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0000000 88 5 888888 0 88 00 3 3 55 222 8 0 3 88 0 55 2 2 0 0 2 5 0 88 222 88 88 0000 88 00000000000000 2 55 88 0 0 0 0 0 22 2 0 00000000000000000000000000 2 5 88 2 2 0 2 0 8888888888888888 0 2 88888 0 0 0 5 0 88 33 5 0 5 000000000000000 0 0 22 8 00 0 00 8 0000000 000000000000 00 0000 55 55 5 2 2 2222 4 88 0 8 88 00 8 0 8 0 00 44444444444444444444444444444444444444444444444444444444444444444444444444444 6 0 00 2 0 00 8 4 444444444444444444444444444444444444 0 4 00 4 0 0000 00 000000 888888888888888 0 0 222 0 0 0 0 0 0 5 55555 333333333 11 888 0 4 888888888 4 888 1 77777777 0 0 000 7 7 7 22222 55 5 5 5 55 5 5555555555555555555555555555555555555555555555555555555555555 5 00 0 3 3 333 7 777 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-AAA--C--------AA-AA-TTAT-TTTGCCAATGT--CA-GTG--TTTCAAGTT---CA--GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--TATA----AT----TTTG---T-----TAAT--------------------AA--------A------AATTATATACCGCAGTT-ACAG--TTTGCATCGC-TC-ATTACCGGGCGTGCA-CTTTT---CG---------TTT-ATCGATAT-A-ATTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-TG-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
Reference ( family-93 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT------C--------AA-AA-TTAT-TTTGCCAATGT--CA-GTG--TTTCAAGTT---CA--GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--TATA----AT----TTTG---T-----TAA---------------------AA--------A------AATT---TACCACAGTT-ACAG--TTTGCATCGC-TCTATTACCGGGCGTGCA-CTTTT---CA---------TTT-ATCAAT-----ATTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-TG-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATGTAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
gi|1 : ACATACCGTATTCG-TCCTATTG-GGCGCCACGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATACT--CCTCTA------C-GCCATGAAA--AAAATTTGACAGCACTACG-TTAACGAGTGTGAATGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGC-ATTATTC-CATGTACGATTTAGTGAACT-TT-CATTTTCACTTTCTCACAGGGC--GATT-GCATTA--TGAAATTTCATGTTGACAGAG----ATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAACAAAAA--AAACGT-GTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-GGGTAGG-TCAGTGGG------GGTTT-------TTTTTGCATAAGGGA--TATTAAATTGTCAAA-ATGAATTAATGAATGC----ATACA-------TTTCT-ATGTTTTC-TTTAATA-CAAGTAC-CTATTATG-TTTGCTCTTGCAATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT------C--------AA-AA-TCAT-TTTGCTAATGT--CA-GTG--TTTCAAATT---TATAGGTA---T-T------TTAT--GG----TTGAGAAATGGGTGCTGACCTCCTTG----ACCCTGCAAAT-ATTCGCT-T--A-ATC--AGCATAATCATAAGT-AGAGTGAT--GATTTGT--T--------T----TTT----T-----CAA---------------------AA--------A------TGTT---TACCACATTT-ACAG--CTTGCAT-GC-TC--TTACCGAGCGTGCAGCTTTTAAACA---------TTTAATCAATATAA-ATTTC-GACTTTTCGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TATTTG------TGGG--------------CACATAAA-T-TC-A-TTATAT-T-TTATCTTG-TTT-TCGTTTGATGGAAATTAAC---GAAGCTTCT--C---AAATGGCGACATACACATCATCG-T---------TTAGG-AAAAT---CATT--------------AGT-CTAA--CACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTATAGTA-ATATGCGTAATTT-CCGAAATACACGGAATG-TGTACAATACGCATCCCCCACTTTGGAC-CTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGTTTGTGTGTATAAT-ACGCAGCAAAAGAATTGATCGA--CCGTAATC-TT-GACT-TATAATCCGC-GTAAT-TCTTCACTAAATATTTTTGCAGAAATATTCAATTCTAAACCATTATAGTACGAGA
gi|10 : aacaaaaaaattctgatcattagaaaagttctcatgtactttactatttttatgtaataagaatacatgttcatgcaagtcatcacaaaacatgtacGA--------------CAAATAAA-TATG-C-TGATGT-T-GTACC-TG-TTT-TGGTTTGATAG-----AAC---G-----TGTGTC---AACAGGCGAAAAACACGTCACCA-T---------TTAAG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGGCC-AATAAAG-TGTTAGTTTA-GAGTAT--ACAGAAACG
gi|11 : ggcgaggtTACGAAT-TTTTACT-TAAA-ATC--AGCAGAATCTTAAGT-AGAATAATTATATTTGT--TATA----ATAA--TTTGGTTT-----TAAT--------------------AAAAAACACTA------AATTATATACGGCAGTT-CCAG--TTTGCATCGC-TCTATTACTGGGCTTGC-----------------------------AT-----ATTTC-GACTTTCGGCA--CTTTTCCTAATG-TCAGGT----GTCG--TGTTTG------TAGgtgttgaactgagtggaggtatattttccaagatggcgactttcgtcccttgtattgatt
gi|12 : AAACACATCACCA-G---------TTAAA-AAAAT---T-CCGCTGC----A--T-AAT-CTCAC-CACGATCGGCCAAATAAAT-TGT--GTTTGCGAG--TCCACAGA
gi|13 : gAGTGT-AGTGTTAAAAGAAATCATTCAACTTTTCAATTTTG-CTAC--TGT-ATTATTC--ATGTCCGACTTGGTGAACT-TTTCATTTTCACTGTATCA-AG-GC--GA-----ATTAAGTGGA--TTCATGTTGATAGAG---GATATTTCAA--ATCTCATTTGGCAAAAAaaacggtgttgagactgagtggggttattttttccaagtggcgacctttcgtacccttgtattgattatt
gi|14 : ---G-----TGT--T---AATCAGCGAAAAACACATCATCA-T---------TTAGG-AAAAT---CATTGCTAC----G-GGGACT-ATAAC-CACGATCACTC-AATAAAT-ACTTAGTTTA-AAA--T--ACAG
gi|15 : aggtG--------------CGCACAAA-T-TG-G-TGATGT-T-TTATC-TG-TTT-TTGTTTGATAG-----AAC---A-----TGC--C---AACCGGCGACAAGAACATTATCA-T---------TTTGG-GAAAT---CATCGCTTC----A-Ggagttgttgttgaatccaacatgacgactttcgttttgt
gi|16 : tttggcgggggtGGT--------------CGCACAAACT-TG-G-TGATGT-T-TTAT---G-TTT-TCGTTTGATAG-----AAA---A-----TGC--C---AACCGCGGGCAAGAACATTATCATT---------TTTGG-GAAAT---CATCGCTTC----A-GAGTGT-TGAAC-CAagtgttgaacc
gi|19 : ggcgggGA--------------CAAACAAA-T-TG-T-TGATGT-T-GAATC-CGTTTT-TCGTTTCGTAG-----AAC---A-----GGT--CGAAGATCGGGAACA
gi|2 : cgatttggggagatTACCGTATTCG-TCCTATTG-AGCG-CGGGGGCGCTT
gi|2 : tCTAAAATTGAATTTTCAAAGAAGTTAT---ACATGCTACCTTCTA------CGGCCATGGATTAAAATGCTGaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaatgctgttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|2 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGC--TGTTATTCTTCGCATGTACGAGTTTATGAACTCTT-CATTTTCACTTCTCCACAGAGCTTAATTTGCATTA--TGGAAATTCATGTTGACAGAA---GATATTTCAACCGCTTCATTACGCAAAAACA---------------CTCGTTGTTCCTCC-GC-TAATATGGTTGA-ATATGAAATAGGTTTCGGTAGG-TCAGTGGGTTTTATGGTTTGTTATTCTTTTTGGATAAGGGA--TATTGAATTGTCAAA-AATAATTA-TGAATGC----ATACGAATACACTTTCTCATGTTT-------ATA-CAAGTAC-ATATTGTG-TTTGCTCTTGCAATCTACTAA--CAGTC--TACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAATCAAAC-C--------AA-AA-TTAT-TTTGCTAAAGT--CA-GTG--TTTCAAGTT----A--AGTA---T-T------TTAC--GA----TTGAGAAATGGGGGCTGACCTCTTTG----ACCCTGCAAAT-ATTCACT-TAAA-----------------AAGT-AGAGTGAT--GCTTTGT--TCT------------------T-----TAA---------------------AA--------A------AATT---TACCACAGTT-ACAG--CTTGCAT-GCGTC--TTACCGAGCGTGCATCTTTT---CAACATTTTATTTT-ATCAATATTAAATTTCGGACTTCTCGCA--CTTTTCCTTTCGCCCAGGT----GTCG--TATTTG------TGGG--------------CACATGTA-T-TGCGCTTATAT-TATTGTCTTG-TTT-TCGTTTGATGGA----AAC---G-----TCT--C---AAATGGCGACATACACATC-TCG-T---------TTTGGAAAAAT---CATTGCTGC----AGGCGAAT-CTAACACACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--ttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|21 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaaACTTACCGTATTCG-TCCTATTGAGGCGGCCCGGGCGCT
gi|22 : tgTACCGTATTCG-TCCTATTG-AGCGCCAC-GGCGCTT
gi|24 : aTACCGTATTCG-TCCTATTG-AGCGCCCCGGGCGCag
gi|3 : CAGAGGCGAATTCATTTAAGTTACAGTATTTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATATCCAT--CCCACTTTGGACACTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTATGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCGGTAATCTTT-GACTA-ATAATCCGCGGTAATAT-TTCACTAAATATTTTTGAAGAAATATTAAATTCTAAACCATTTCAGTACAAGA
gi|4 : TCCACAAC-ATGAACATAACTTTTAGAAGTTGTCATACAAAT------CCAAAACAAAATAA-TTATATTTGCCACTGT--CA-GTG--TTTCA-GTTACCCA--GGTAGGAT-TGTGGGATCACTTGGATCATTCAGA----GTCA-TGACCTCAATT----ACCCTACGAATTGTTTACT-TAAA-ATCCAGGCAGAATCATA-GT-AGAATAAT--TATTTGT--TATACATAAT----TTTG---TGTAATTAA---------------------AA--------ACACTTAAATTATATACGGCCGTTTACAG--TTTGCATTGC-TCCATTACT--GCTTGTA-CT--------------------------C-----ATTTC-GACTTTCGGCACTCTTTTCCTATTG-TCAGGT-----TCA--TGTTTG------TAGATTTGGTAAGAATGCCACACAAA-T-TA-G-TTATAA-T-TCAGC-TA-TTTAT--TTTGGTGG-----AACGT-G-----TGT--C---AAACGGCGAC--ACACATCATCA-TTAAACGACATTAGG-AAAAT---CATTGCTGCACTGA-GTGAATCCTAACGCACGATC-TTC-AATAAATCTGTTAGGTTA-atttgcgaagtgcacagccaaattgtttagataacagtcgtcttgatttcctgtcgcagtcgctgatacccagcaggtatatcgtgttaatttcagcagagcacgagcttttgcagcatgtcagttttttaacagcttacttgataaattcctttgtaattgaaacttagaaacaagtcgatggtacaatatgacattaggcgttatattatgttggtactttttaaaaagtgtcggcaattatatagagcgtctagttggttaataacaatactctgaatactttagagaattacaccctctgaaatgtgttgcatgaaggttgtgtataccagtcgtttacagcaaaggcaagcactgcggaattgaggacacagcgataattt
gi|5 : ttcatttttatctatatacattttgtcaagttaacttgtgacgtgcttttgtcaataaagcacttattatatactCGTATTCG-TCCTATTG-GGCGC
gi|5 : CTAAAAT-GAATTTTCAAAGAAG---T---ATATGAT--CCTCTAGATCTAC-GCCATGAAT--GAAATCTGACAGCACTACG-T------------GTATAAACAGGAAAC---------------TTTGACTACACTGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCATTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAGATCGATATTTCAA--ATCTCATTACACAAAAAAAAAAAAA--AAAAATACCCG-TGTTCC--C-GC-TAATATA-TTGA-ATAT-AAATAGGTT-TGATAGG-TCAGTGG---------------------CTTG-A-AA--GA--C----AATCGTCAAA-ATAAATTA-TGAATGCATATATACA-------TTTCT-ATGTTTTCTTT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCCATCTACTAA--CAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatgaattttcaaagaagtatatgatcctctagatctacgccatgaatgaaatctgacagcactacgtgtataaacaggaaactttgactacactgtattattccatgtacgacttagtgaactttcattttcattttctcacagagcgattgcattatggaatttcatgttgacagagatcgatatttcaaatctcattacacaaaaaaaaaaaaaaaaaatacccgtgttcccgctaatatattgaatataaataggtttgataggtcagtggcttgaaagacaatcgtcaaaataaattatgaatgcatatatacatttctatgttttctttatacaagtacctattatgtttgctcttgccatctactaaca
gi|6 : cgtattcgtcctattgggcgcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTAGACTATGTACTTTGCGGTAAT-T-TTCACTAAACATTTTTGCAGAAATA-TAAATTCTAAATAATTA-AGTAC
gi|7 : GT--CA-GTG--TTTCAAGTT---AG--GATA---TAC------TCAC--GG----TTGAGAA-TGAACACTG-CCTCCTTGCCCCATCCTTCAAA--ACTTACTCTAAATATC--AGCATAATCATAAGTTAGAATAGT--GAGTTATACTACA----CTCTAATTTG---T-----TAATACCCCCCCCCCCCCCAAAAAAA--------A------AA------ACCAC---T-ACAGGCTTTTCATCGC-T--AT-GCCGGACGCGCA-TGTGC---TG---------TCT--TTGAT-----ATTTCCGACCTT-GGCA---TTTTCCATTTA-CAAAGCTTTAGTCAAATGTTTGACAAAATGG---------------CACACAAA-T-TG-G-TTATACAT-TTATC-AT-TTC-TAGTTTGATGG-----AACTTTG-----TAT--C---AAAACTCAACAAACACATCATAA-T---------CTAGA-AAAAAAAACATTGCTGC----A-GTGAAT-CTAAC-TACGATCAT-------AAT-TGTTAGATTA-GAG--T--ACAGataaccaagaatttaaagaatttggctaattagttgtctgacttgtctacatcgcaggatacccacaggtgcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttgagtacaagttccgtactcggcaccgcaacctggaacatgcatattatttgtaaccgaccttgtacatgtcgtattaaaaatgatataggtctaattttgttttttgttcaataacagtacgtgaaaaatactttatggaagaaaagtgtgataccctctgatatttttattggcatgaggtaggtgtaaatcagcctttacagcaaaacacgcacgtgggaaatcaaggacatatcgcgttcaaatt
gi|8 : aCCGTTGTTCC--CTGCCTAATATGCTTGATATAT-AAATAGTTT-CGG-AGGCTCAGT----------GTTT-------TTTgaatgagtgttgaatcagag
gi|8 : GGG------GGTTA-------T------ATAAGGGAAGTATTGAATTGTCAAATATAAATTA-TGAATGCC---AT-TA-------TTTCG-ATGTTTTC-TT--ATATCCTGTACGCTATTATGGTTTGCT-TTGTCATCTACTGATACAGTCCTAACTCAACAACCATGAAGATAACTTTA-AAAGTCGTAATACGAATAAAAAAC--------AA-AAGTTA--TTTGCCAA-GTCCCACGTGGTTTCCAAGTT---C---GGTA---T-T------TTAC--GG----TTGAGAattcttaatgttttggggggtggggggggggggttatataagggaagtattgaattgtcaaatataaattatgaatgccattatttcgatgttttcttatatcctgtacgctattatggtttgctttgtcatctactgatacagtcctaactcaacaaccatgaagataactttaaaagtcgtaatacgaataaaaaacaaaagttatttgccaagtcccacgtggtttccaagttcggtattttacggttgaga
gi|9 : ccgttgttccctgcctaatatgcttgatatataaatagtttcggaggctcagtgttttttattcttaatgttttggggggtgggggggCGTATTTGGTCCTATTG-GGCGCCCCGGGTGTT
gi|9 : TAATAT-TAATTTTCAAAGA-G---TTCTATATACT--CCT-TA------C-TCCATGAAT--AAATACTGACAGCACTACGTTTAACGAGTGCGAGTGTAGAACAGGAACAT-CAA-TTT-CAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcatataatattaattttcaaagagttctatatactccttactccatgaataaatactgacagcactacgtttaacgagtgcgagtgtagaacaggaacatcaatttcaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACAAAATCCAATTCATCCTCAAAAAGGTCCAGAACTTGTGCATTTTTTACTTAAAACATTTTTCATGATTTGTGAAGAAAGCATGAGCAGAAGAATCCTTTGACATGAAATCA
Unaligned ( gi|18 ): TAGCCTTAGAACACAGAAACAGGTGTTGAATCGAGTGGGGGTATGTATATTTTCTAAGATGGCGATTTTCGTCCCTTGTATTCATATAATA
Unaligned ( gi|20 ): GTGTTGAACCAAGTGGGCGTACTTTGTCCAAGATGGCGACT
Unaligned ( gi|23 ): TGCTATTTTGTTACGAAATGTTTATGCTTCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2222222 11 222222 1 11 1 111 1 11 1 11 1 1 11 111 11 2222 11 33333333333333 11 1 1 2 1 1 11 1 55555555555555555555555555 11 1 1 3333333333333333 1 11111 1 1 1 11 11 2 5555555 11111 11 11 11 3333333 333333333333 11 1111 11 2222 1111111 11 555555555555555555555555555555555555555555555555555555 111 11 1 2222 4444444444444444444444444444444444444 11 1111 11 222222 333333333333333 11111 222222222 111111111 1 11111 11 1 1 11 1 8888888888888888888888888888888888888888888888888888888888888 1 11 1 11 111 1
lowQualScore : 1 5 5 0 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 3 6666666 33 2 888888 0 33 22 3 7 99 000 8 0 7 33 0 22 0 1 0 0 0 2 7 33 000 33 66 0000 33 55555555555555 0 66 33 0 0 0 0 0 00 3 0 22222222222222222222222222 3 2 33 3 0 0 1 0 7777777777777777 0 3 77777 0 0 0 2 1 33 88 2 0 6 2222222 88888 33 9 11 8 11 0 7777777 000000000000 11 7777 22 00 2 3 0 1111 1 88 8 6666666 3 1 0 8 11 666666666666666666666666666666666666666666666666666666 1 555 333 11 3 8 6666 0 1 7777777777777777777777777777777777777 8 6 11 1 8 7777 11 333333 444444444444444 5 5 888 1 5 5 99999 5 4 77777 000000000 66 777 1 4 777777777 4 777 0 99999999 5 0 888 5 5 5 11111 66 5 5 2 77 5 6666666666666666666666666666666666666666666666666666666666666 5 88 1 7 3 44 6 777 7 2
lowQualScore : . . . . . ............................................................................................................................ . . ....... .. . ...... . .. .. . . .. ... . . . .. . .. . . . . . . . .. ... .. .. .... .. .............. . .. .. . . . . . .. . . .......................... . . .. . . . . . ................ . . ..... . . . . . .. .. . . . ....... ..... .. . .. . .. . ....... ............ .. .... .. .. . . . .... . .. . ....... . . . . .. ...................................................... . ... ... .. . . .... . . ..................................... . . .. . . .... .. ...... ............... . . ... . . . ..... . . ..... ......... .. ... . . ......... . ... . ........ . . ... . . . ..... .. . . . .. . ............................................................. . .. . . . .. . ... . .
lowQualScore : 0 7 7 7 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0000000 88 5 888888 0 88 00 3 3 55 222 8 0 3 88 0 55 2 2 0 0 2 5 0 88 222 88 88 0000 88 00000000000000 2 55 88 0 0 0 0 0 22 2 0 00000000000000000000000000 2 5 88 2 2 0 2 0 8888888888888888 0 2 88888 0 0 0 5 0 88 33 5 0 5 2222222 55555 22 8 00 0 00 8 0000000 000000000000 00 0000 55 55 5 2 2 2222 4 88 0 2222222 8 0 8 0 00 444444444444444444444444444444444444444444444444444444 4 888 666 00 2 0 6666 8 4 4444444444444444444444444444444444444 0 4 00 4 0 0000 00 000000 888888888888888 0 0 222 0 0 0 22222 0 5 55555 333333333 11 888 0 4 888888888 4 888 1 77777777 0 0 000 7 7 7 22222 55 5 5 5 55 5 5555555555555555555555555555555555555555555555555555555555555 5 00 0 3 3 77 7 777 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAATC-AAAA-CAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGTT---CA--GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--T----ATAAT----TTTG---T-TAA-TA--------------AAAA----TAAATTATATACCGCAG-TTACAG--TTTGCATCGC-T-C-ATTACCGGGCGTGCA-CTTTT---CG---------TTTA-TCGATAT--AA-TTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-T-G-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
Reference ( family-93 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT---AAA-CAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGTT---CA--GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--T----ATAAT----TTTG---T-TAA-TA--------------A--------AAATTATATACCGCAG-TTACAG--TTTGCATCGC-T-C-ATTACCGGGCGTGCA-CTTTT---CG---------TTTA-TCGATAT--AA-TTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-T-G-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
gi|1 : ACATACCGTATTCG-TCCTATTG-GGCGCCACGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATACT--CCTCTA------C-GCCATGAAA--AAAATTTGACAGCACTACG-TTAACGAGTGTGAATGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGC-ATTATTC-CATGTACGATTTAGTGAACT-TT-CATTTTCACTTTCTCACAGGGC--GATT-GCATTA--TGAAATTTCATGTTGACAGAG----ATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAACAAAAA--AAACGT-GTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-GGGTAGG-TCAGTGGG------GGTTT-------TTTTTGCATAAGGGA--TATTAAATTGTCAAA-ATGAATTAATGAATGC----ATACA-------TTTCT-ATGTTTTC-TTTAATA-CAAGTAC-CTATTATG-TTTGCTCTTGCAATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-------CAAAA-T---CAT-TTTGCTAATGT--CA-GTG--TTTCAAATT---TATAGGTA---T-T------TTAT--GG----TTGAGAAATGGGTGCTGACCTCCTTG----ACCCTGCAAAT-ATTCGCT-TAA---TC--AGCATAATCATAAGT-AGAGTGAT--GATTTGT--T--------T----TTT----------TC--------------A--------AAAATGTTTACCACAT-TTACAG--CTTGCAT-GC-T-C--TTACCGAGCGTGCAGCTTTTAAACA---------TTTAATCAATAT--AAATTTC-GACTTTTCGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TATTTG------TGGG--------------CACATAAA-T-TC-A-TTATAT-T-TTATC-TTG-TTT-TCGTTTGATGGAAATTAAC---GAAGCTTCT--C---AAATGGCGACATACACATCATCG-T---------TTAGG-AAAAT---CATT--------------AGT-CTAA--CACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTATAGTA-ATATGCGTAATTT-CCGAAATACACGGAATG-TGTACAATACGCATCCCCCACTTTGGAC-CTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGTTTGTGTGTATAAT-ACGCAGCAAAAGAATTGATCGA--CCGTAATC-TT-GACT-TATAATCCGC-GTAAT-TCTTCACTAAATATTTTTGCAGAAATATTCAATTCTAAACCATTATAGTACGAGA
gi|10 : aacaaaaaaattctgatcattagaaaagttctcatgtactttactatttttatgtaataagaatacatgttcatgcaagtcatcacaaaacatgtacGA--------------CAAATAAA-TATG-C-TGATGT-T-GTACC-T-G-TTT-TGGTTTGATAG-----AAC---G-----TGTGTC---AACAGGCGAAAAACACGTCACCA-T---------TTAAG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGGCC-AATAAAG-TGTTAGTTTA-GAGTAT--ACAGAAACG
gi|11 : ggcgaggtTACGAAT-TTTTACT-TAAA-ATC--AGCAGAATCTTAAGT-AGAATAATTATATTTGT--T----ATAATAA--TTTGGTTT-TAA-TA--------------AAAAACACTAAATTATATACGGCAG-TTCCAG--TTTGCATCGC-T-CTATTACTGGGCTTGCA-T---------------------------------A-TTTC-GACTTTCGGCA--CTTTTCCTAATG-TCAGGT----GTCG--TGTTTG------TAGgtgttgaactgagtggaggtatattttccaagatggcgactttcgtcccttgtattgatt
gi|12 : AAACACATCACCA-G---------TTAAA-AAAAT---T-CCGCTGC----A--T-AAT-CTCAC-CACGATCGGCCAAATAAAT-TGT--GTTTGCGAG--TCCACAGA
gi|13 : gAGTGT-AGTGTTAAAAGAAATCATTCAACTTTTCAATTTTG-CTAC--TGT-ATTATTC--ATGTCCGACTTGGTGAACT-TTTCATTTTCACTGTATCA-AG-GC--GA-----ATTAAGTGGA--TTCATGTTGATAGAG---GATATTTCAA--ATCTCATTTGGCAAAAAaaacggtgttgagactgagtggggttattttttccaagtggcgacctttcgtacccttgtattgattatt
gi|14 : ---G-----TGT--T---AATCAGCGAAAAACACATCATCA-T---------TTAGG-AAAAT---CATTGCTAC----G-GGGACT-ATAAC-CACGATCACTC-AATAAAT-ACTTAGTTTA-AAA--T--ACAG
gi|15 : aggtG--------------CGCACAAA-T-TG-G-TGATGT-T-TTATC-T-G-TTT-TTGTTTGATAG-----AAC---A-----TGC--C---AACCGGCGACAAGAACATTATCA-T---------TTTGG-GAAAT---CATCGCTTC----A-Ggagttgttgttgaatccaacatgacgactttcgttttgt
gi|16 : tttggcgggggtGGT--------------CGCACAAACT-TG-G-TGATGT-T-TTAT----G-TTT-TCGTTTGATAG-----AAA---A-----TGC--C---AACCGCGGGCAAGAACATTATCATT---------TTTGG-GAAAT---CATCGCTTC----A-GAGTGT-TGAAC-CAagtgttgaacc
gi|19 : ggcgggGA--------------CAAACAAA-T-TG-T-TGATGT-T-GAATC-C-GTTTT-TCGTTTCGTAG-----AAC---A-----GGT--CGAAGATCGGGAACA
gi|2 : cgatttggggagatTACCGTATTCG-TCCTATTG-AGCG-CGGGGGCGCTT
gi|2 : tCTAAAATTGAATTTTCAAAGAAGTTAT---ACATGCTACCTTCTA------CGGCCATGGATTAAAATGCTGaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaatgctgttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|2 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGC--TGTTATTCTTCGCATGTACGAGTTTATGAACTCTT-CATTTTCACTTCTCCACAGAGCTTAATTTGCATTA--TGGAAATTCATGTTGACAGAA---GATATTTCAACCGCTTCATTACGCAAAAACA---------------CTCGTTGTTCCTCC-GC-TAATATGGTTGA-ATATGAAATAGGTTTCGGTAGG-TCAGTGGGTTTTATGGTTTGTTATTCTTTTTGGATAAGGGA--TATTGAATTGTCAAA-AATAATTA-TGAATGC----ATACGAATACACTTTCTCATGTTT-------ATA-CAAGTAC-ATATTGTG-TTTGCTCTTGCAATCTACTAA--CAGTC--TACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAATC--AAACCAAAA-T---TAT-TTTGCTAAAGT--CA-GTG--TTTCAAGTT----A--AGTA---T-T------TTAC--GA----TTGAGAAATGGGGGCTGACCTCTTTG----ACCCTGCAAAT-ATTCACT-TAAA-----------------AAGT-AGAGTGAT--GCTTTGT--T----CT--------------T-TAA--A--------------A--------AAATT---TACCACAG-TTACAG--CTTGCAT-GCGT-C--TTACCGAGCGTGCATCTTTT---CAACATTTTATTTTA-TCAATATTAAA-TTTCGGACTTCTCGCA--CTTTTCCTTTCGCCCAGGT----GTCG--TATTTG------TGGG--------------CACATGTA-T-TGCGCTTATAT-TATTGTCTT-G-TTT-TCGTTTGATGGA----AAC---G-----TCT--C---AAATGGCGACATACACATC-TCG-T---------TTTGGAAAAAT---CATTGCTGC----AGGCGAAT-CTAACACACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--ttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|21 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaaACTTACCGTATTCG-TCCTATTGAGGCGGCCCGGGCGCT
gi|22 : tgTACCGTATTCG-TCCTATTG-AGCGCCAC-GGCGCTT
gi|24 : aTACCGTATTCG-TCCTATTG-AGCGCCCCGGGCGCag
gi|3 : CAGAGGCGAATTCATTTAAGTTACAGTATTTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATATCCAT--CCCACTTTGGACACTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTATGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCGGTAATCTTT-GACTA-ATAATCCGCGGTAATAT-TTCACTAAATATTTTTGAAGAAATATTAAATTCTAAACCATTTCAGTACAAGA
gi|4 : TCCACAAC-ATGAACATAACTTTTAGAAGTTGTCATACAAATCCAAAA-CAAAA-TAATTATATTTGCCACTGT--CA-GTG--TTTCA-GTTACCCA--GGTAGGAT-TGTGGGATCACTTGGATCATTCAGA----GTCA-TGACCTCAATT----ACCCTACGAATTGTTTACT-TAAA-ATCCAGGCAGAATCATA-GT-AGAATAAT--TATTTGT--TATACATAAT----TTTG---TGTAATTA--------------AAAACACTTAAATTATATACGGCCGTTTACAG--TTTGCATTGC-TCC-ATTACT--GCTTGTA-CTC-------------------------------A-TTTC-GACTTTCGGCACTCTTTTCCTATTG-TCAGGT-----TCA--TGTTTG------TAGATTTGGTAAGAATGCCACACAAA-T-TA-G-TTATAA-T-TCAGC-T-A-TTTAT--TTTGGTGG-----AACGT-G-----TGT--C---AAACGGCGAC--ACACATCATCA-TTAAACGACATTAGG-AAAAT---CATTGCTGCACTGA-GTGAATCCTAACGCACGATC-TTC-AATAAATCTGTTAGGTTA-atttgcgaagtgcacagccaaattgtttagataacagtcgtcttgatttcctgtcgcagtcgctgatacccagcaggtatatcgtgttaatttcagcagagcacgagcttttgcagcatgtcagttttttaacagcttacttgataaattcctttgtaattgaaacttagaaacaagtcgatggtacaatatgacattaggcgttatattatgttggtactttttaaaaagtgtcggcaattatatagagcgtctagttggttaataacaatactctgaatactttagagaattacaccctctgaaatgtgttgcatgaaggttgtgtataccagtcgtttacagcaaaggcaagcactgcggaattgaggacacagcgataattt
gi|5 : ttcatttttatctatatacattttgtcaagttaacttgtgacgtgcttttgtcaataaagcacttattatatactCGTATTCG-TCCTATTG-GGCGC
gi|5 : CTAAAAT-GAATTTTCAAAGAAG---T---ATATGAT--CCTCTAGATCTAC-GCCATGAAT--GAAATCTGACAGCACTACG-T------------GTATAAACAGGAAAC---------------TTTGACTACACTGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCATTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAGATCGATATTTCAA--ATCTCATTACACAAAAAAAAAAAAA--AAAAATACCCG-TGTTCC--C-GC-TAATATA-TTGA-ATAT-AAATAGGTT-TGATAGG-TCAGTGG---------------------CTTG-A-AA--GA--C----AATCGTCAAA-ATAAATTA-TGAATGCATATATACA-------TTTCT-ATGTTTTCTTT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCCATCTACTAA--CAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatgaattttcaaagaagtatatgatcctctagatctacgccatgaatgaaatctgacagcactacgtgtataaacaggaaactttgactacactgtattattccatgtacgacttagtgaactttcattttcattttctcacagagcgattgcattatggaatttcatgttgacagagatcgatatttcaaatctcattacacaaaaaaaaaaaaaaaaaatacccgtgttcccgctaatatattgaatataaataggtttgataggtcagtggcttgaaagacaatcgtcaaaataaattatgaatgcatatatacatttctatgttttctttatacaagtacctattatgtttgctcttgccatctactaaca
gi|6 : cgtattcgtcctattgggcgcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTAGACTATGTACTTTGCGGTAAT-T-TTCACTAAACATTTTTGCAGAAATA-TAAATTCTAAATAATTA-AGTAC
gi|7 : GT--CA-GTG--TTTCAAGTT---AG--GATA---TAC------TCAC--GG----TTGAGAA-TGAACACTG-CCTCCTTGCCCCATCCTTCAAA--ACTTACTCTAAATATC--AGCATAATCATAAGTTAGAATAGT--GAGTTATACT----ACACTCTAATTTG---T-TAA-TACCCCCCCCCCCCCCA--------AAAAAAAAAACCAC----TACAGGCTTTTCATCGC-T---AT-GCCGGACGCGCA-TGTGC---TG---------TCT--TTGATAT-----TTCC-GACCTT-GGCA---TTTTCCATTTA-CAAAGCTTTAGTCAAATGTTTGACAAAATGG---------------CACACAAA-T-TG-G-TTATACAT-TTATC-A-T-TTC-TAGTTTGATGG-----AACTTTG-----TAT--C---AAAACTCAACAAACACATCATAA-T---------CTAGA-AAAAAAAACATTGCTGC----A-GTGAAT-CTAAC-TACGATCAT-------AAT-TGTTAGATTA-GAG--T--ACAGataaccaagaatttaaagaatttggctaattagttgtctgacttgtctacatcgcaggatacccacaggtgcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttgagtacaagttccgtactcggcaccgcaacctggaacatgcatattatttgtaaccgaccttgtacatgtcgtattaaaaatgatataggtctaattttgttttttgttcaataacagtacgtgaaaaatactttatggaagaaaagtgtgataccctctgatatttttattggcatgaggtaggtgtaaatcagcctttacagcaaaacacgcacgtgggaaatcaaggacatatcgcgttcaaatt
gi|8 : aCCGTTGTTCC--CTGCCTAATATGCTTGATATAT-AAATAGTTT-CGG-AGGCTCAGT----------GTTT-------TTTgaatgagtgttgaatcagag
gi|8 : GGG------GGTTA-------T------ATAAGGGAAGTATTGAATTGTCAAATATAAATTA-TGAATGCC---AT-TA-------TTTCG-ATGTTTTC-TT--ATATCCTGTACGCTATTATGGTTTGCT-TTGTCATCTACTGATACAGTCCTAACTCAACAACCATGAAGATAACTTTA-AAAGTCGTAATACGAATAAAAAA-CAAAAGT---TA--TTTGCCAA-GTCCCACGTGGTTTCCAAGTT---C---GGTA---T-T------TTAC--GG----TTGAGAattcttaatgttttggggggtggggggggggggttatataagggaagtattgaattgtcaaatataaattatgaatgccattatttcgatgttttcttatatcctgtacgctattatggtttgctttgtcatctactgatacagtcctaactcaacaaccatgaagataactttaaaagtcgtaatacgaataaaaaacaaaagttatttgccaagtcccacgtggtttccaagttcggtattttacggttgaga
gi|9 : ccgttgttccctgcctaatatgcttgatatataaatagtttcggaggctcagtgttttttattcttaatgttttggggggtgggggggCGTATTTGGTCCTATTG-GGCGCCCCGGGTGTT
gi|9 : TAATAT-TAATTTTCAAAGA-G---TTCTATATACT--CCT-TA------C-TCCATGAAT--AAATACTGACAGCACTACGTTTAACGAGTGCGAGTGTAGAACAGGAACAT-CAA-TTT-CAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcatataatattaattttcaaagagttctatatactccttactccatgaataaatactgacagcactacgtttaacgagtgcgagtgtagaacaggaacatcaatttcaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACAAAATCCAATTCATCCTCAAAAAGGTCCAGAACTTGTGCATTTTTTACTTAAAACATTTTTCATGATTTGTGAAGAAAGCATGAGCAGAAGAATCCTTTGACATGAAATCA
Unaligned ( gi|18 ): TAGCCTTAGAACACAGAAACAGGTGTTGAATCGAGTGGGGGTATGTATATTTTCTAAGATGGCGATTTTCGTCCCTTGTATTCATATAATA
Unaligned ( gi|20 ): GTGTTGAACCAAGTGGGCGTACTTTGTCCAAGATGGCGACT
Unaligned ( gi|23 ): TGCTATTTTGTTACGAAATGTTTATGCTTCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2222222 11 222222 1 11 1 111 1 11 1 11 1 1 11 111 11 2222 11 33333333333333 11 1 1 2 1 1 11 1 55555555555555555555555555 11 1 1 3333333333333333 1 11111 1 1 1 11 11 2 111 11111 11 11 11 3333333 333333333333 11 1111 11 2222 1111111 11 33333333333333333333333333333333333333333333333333333333333333 111 11 1 2222 4444444444444444444444444444444444444 11 1111 11 222222 333333333333333 11111 222222222 111111111 1 11111 11 1 1 11 1 8888888888888888888888888888888888888888888888888888888888888 1 11 1 11 111 1
lowQualScore : 1 5 5 0 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 3 6666666 33 2 888888 0 33 22 3 7 99 000 8 0 7 33 0 22 0 1 0 0 0 2 7 33 000 33 66 0000 33 55555555555555 0 66 33 0 0 0 0 0 00 3 0 22222222222222222222222222 3 2 33 3 0 0 1 0 7777777777777777 0 3 77777 0 0 0 2 1 33 88 2 0 6 666 2 88888 33 9 11 8 11 0 7777777 000000000000 11 7777 22 00 2 3 0 1111 1 88 8 6666666 3 1 0 8 11 11111111111111111111111111111111111111111111111111111111111111 333 11 3 8 6666 0 1 7777777777777777777777777777777777777 8 6 11 1 8 7777 11 333333 444444444444444 5 5 888 1 5 5 99999 5 4 77777 000000000 66 777 1 4 777777777 4 777 0 99999999 5 0 888 5 5 5 11111 66 5 5 2 77 5 6666666666666666666666666666666666666666666666666666666666666 5 88 1 7 3 44 6 777 7 2
lowQualScore : . . . . . ............................................................................................................................ . . ....... .. . ...... . .. .. . . .. ... . . . .. . .. . . . . . . . .. ... .. .. .... .. .............. . .. .. . . . . . .. . . .......................... . . .. . . . . . ................ . . ..... . . . . . .. .. . . . ... . ..... .. . .. . .. . ....... ............ .. .... .. .. . . . .... . .. . ....... . . . . .. .............................................................. ... .. . . .... . . ..................................... . . .. . . .... .. ...... ............... . . ... . . . ..... . . ..... ......... .. ... . . ......... . ... . ........ . . ... . . . ..... .. . . . .. . ............................................................. . .. . . . .. . ... . .
lowQualScore : 0 7 7 7 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0000000 88 5 888888 0 88 00 3 3 55 222 8 0 3 88 0 55 2 2 0 0 2 5 0 88 222 88 88 0000 88 00000000000000 2 55 88 0 0 0 0 0 22 2 0 00000000000000000000000000 2 5 88 2 2 0 2 0 8888888888888888 0 2 88888 0 0 0 5 0 88 33 5 0 5 222 5 55555 22 8 00 0 00 8 0000000 000000000000 00 0000 55 55 5 2 2 2222 4 88 0 2222222 8 0 8 0 00 00000000000000000000000000000000000000000000000000000000000000 666 00 2 0 6666 8 4 4444444444444444444444444444444444444 0 4 00 4 0 0000 00 000000 888888888888888 0 0 222 0 0 0 22222 0 5 55555 333333333 11 888 0 4 888888888 4 888 1 77777777 0 0 000 7 7 7 22222 55 5 5 5 55 5 5555555555555555555555555555555555555555555555555555555555555 5 00 0 3 3 77 7 777 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAACAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGTT---CA--GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--T----ATAAT----TTTG---T-TAA-TA--------------AAAA----TAAATTATATACCGCAG-TTACAG--TTTGCATCGC-T-C-ATTACCGGGCGTGCA-CTTTT---CG---------TTTA-TCGATAT--AA-TTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-T-G-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
Reference ( family-93 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAACAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGTT---CA--GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--T----ATAAT----TTTG---T-TAA-TA--------------AAAA----TAAATTATATACCGCAG-TTACAG--TTTGCATCGC-T-C-ATTACCGGGCGTGCA-CTTTT---CG---------TTTA-TCGATAT--AA-TTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-T-G-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
gi|1 : ACATACCGTATTCG-TCCTATTG-GGCGCCACGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATACT--CCTCTA------C-GCCATGAAA--AAAATTTGACAGCACTACG-TTAACGAGTGTGAATGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGC-ATTATTC-CATGTACGATTTAGTGAACT-TT-CATTTTCACTTTCTCACAGGGC--GATT-GCATTA--TGAAATTTCATGTTGACAGAG----ATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAACAAAAA--AAACGT-GTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-GGGTAGG-TCAGTGGG------GGTTT-------TTTTTGCATAAGGGA--TATTAAATTGTCAAA-ATGAATTAATGAATGC----ATACA-------TTTCT-ATGTTTTC-TTTAATA-CAAGTAC-CTATTATG-TTTGCTCTTGCAATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAA------T---CAT-TTTGCTAATGT--CA-GTG--TTTCAAATT---TATAGGTA---T-T------TTAT--GG----TTGAGAAATGGGTGCTGACCTCCTTG----ACCCTGCAAAT-ATTCGCT-TAA---TC--AGCATAATCATAAGT-AGAGTGAT--GATTTGT--T-------------TTT----T-T---CA--------------AAAA----TG--TT---TACCACAT-TTACAG--CTTGCAT-GC-T-C--TTACCGAGCGTGCAGCTTTTAAACA---------TTTAATCAATAT--AAATTTC-GACTTTTCGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TATTTG------TGGG--------------CACATAAA-T-TC-A-TTATAT-T-TTATC-TTG-TTT-TCGTTTGATGGAAATTAAC---GAAGCTTCT--C---AAATGGCGACATACACATCATCG-T---------TTAGG-AAAAT---CATT--------------AGT-CTAA--CACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTATAGTA-ATATGCGTAATTT-CCGAAATACACGGAATG-TGTACAATACGCATCCCCCACTTTGGAC-CTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGTTTGTGTGTATAAT-ACGCAGCAAAAGAATTGATCGA--CCGTAATC-TT-GACT-TATAATCCGC-GTAAT-TCTTCACTAAATATTTTTGCAGAAATATTCAATTCTAAACCATTATAGTACGAGA
gi|10 : aacaaaaaaattctgatcattagaaaagttctcatgtactttactatttttatgtaataagaatacatgttcatgcaagtcatcacaaaacatgtacGA--------------CAAATAAA-TATG-C-TGATGT-T-GTACC-T-G-TTT-TGGTTTGATAG-----AAC---G-----TGTGTC---AACAGGCGAAAAACACGTCACCA-T---------TTAAG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGGCC-AATAAAG-TGTTAGTTTA-GAGTAT--ACAGAAACG
gi|11 : ggcgaggtTACGAAT-TTTTACT-TAAA-ATC--AGCAGAATCTTAAGT-AGAATAATTATATTTGT--T----ATAATAA--TTTGGTTT-TAA-TA--------------AAAAACACTAAATTATATACGGCAG-TTCCAG--TTTGCATCGC-T-CTATTACTGGGCTTGCA-T---------------------------------A-TTTC-GACTTTCGGCA--CTTTTCCTAATG-TCAGGT----GTCG--TGTTTG------TAGgtgttgaactgagtggaggtatattttccaagatggcgactttcgtcccttgtattgatt
gi|12 : AAACACATCACCA-G---------TTAAA-AAAAT---T-CCGCTGC----A--T-AAT-CTCAC-CACGATCGGCCAAATAAAT-TGT--GTTTGCGAG--TCCACAGA
gi|13 : gAGTGT-AGTGTTAAAAGAAATCATTCAACTTTTCAATTTTG-CTAC--TGT-ATTATTC--ATGTCCGACTTGGTGAACT-TTTCATTTTCACTGTATCA-AG-GC--GA-----ATTAAGTGGA--TTCATGTTGATAGAG---GATATTTCAA--ATCTCATTTGGCAAAAAaaacggtgttgagactgagtggggttattttttccaagtggcgacctttcgtacccttgtattgattatt
gi|14 : ---G-----TGT--T---AATCAGCGAAAAACACATCATCA-T---------TTAGG-AAAAT---CATTGCTAC----G-GGGACT-ATAAC-CACGATCACTC-AATAAAT-ACTTAGTTTA-AAA--T--ACAG
gi|15 : aggtG--------------CGCACAAA-T-TG-G-TGATGT-T-TTATC-T-G-TTT-TTGTTTGATAG-----AAC---A-----TGC--C---AACCGGCGACAAGAACATTATCA-T---------TTTGG-GAAAT---CATCGCTTC----A-Ggagttgttgttgaatccaacatgacgactttcgttttgt
gi|16 : tttggcgggggtGGT--------------CGCACAAACT-TG-G-TGATGT-T-TTAT----G-TTT-TCGTTTGATAG-----AAA---A-----TGC--C---AACCGCGGGCAAGAACATTATCATT---------TTTGG-GAAAT---CATCGCTTC----A-GAGTGT-TGAAC-CAagtgttgaacc
gi|19 : ggcgggGA--------------CAAACAAA-T-TG-T-TGATGT-T-GAATC-C-GTTTT-TCGTTTCGTAG-----AAC---A-----GGT--CGAAGATCGGGAACA
gi|2 : cgatttggggagatTACCGTATTCG-TCCTATTG-AGCG-CGGGGGCGCTT
gi|2 : tCTAAAATTGAATTTTCAAAGAAGTTAT---ACATGCTACCTTCTA------CGGCCATGGATTAAAATGCTGaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaatgctgttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|2 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGC--TGTTATTCTTCGCATGTACGAGTTTATGAACTCTT-CATTTTCACTTCTCCACAGAGCTTAATTTGCATTA--TGGAAATTCATGTTGACAGAA---GATATTTCAACCGCTTCATTACGCAAAAACA---------------CTCGTTGTTCCTCC-GC-TAATATGGTTGA-ATATGAAATAGGTTTCGGTAGG-TCAGTGGGTTTTATGGTTTGTTATTCTTTTTGGATAAGGGA--TATTGAATTGTCAAA-AATAATTA-TGAATGC----ATACGAATACACTTTCTCATGTTT-------ATA-CAAGTAC-ATATTGTG-TTTGCTCTTGCAATCTACTAA--CAGTC--TACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAACCAAAA-T---TAT-TTTGCTAAAGT--CA-GTG--TTTCAAGTT----A--AGTA---T-T------TTAC--GA----TTGAGAAATGGGGGCTGACCTCTTTG----ACCCTGCAAAT-ATTCACT-TAAA-----------------AAGT-AGAGTGAT--GCTTTGT--T--------C----TT-----------TA--------------AAA------AAATT---TACCACAG-TTACAG--CTTGCAT-GCGT-C--TTACCGAGCGTGCATCTTTT---CAACATTTTATTTTA-TCAATATTAAA-TTTCGGACTTCTCGCA--CTTTTCCTTTCGCCCAGGT----GTCG--TATTTG------TGGG--------------CACATGTA-T-TGCGCTTATAT-TATTGTCTT-G-TTT-TCGTTTGATGGA----AAC---G-----TCT--C---AAATGGCGACATACACATC-TCG-T---------TTTGGAAAAAT---CATTGCTGC----AGGCGAAT-CTAACACACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--ttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|21 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaaACTTACCGTATTCG-TCCTATTGAGGCGGCCCGGGCGCT
gi|22 : tgTACCGTATTCG-TCCTATTG-AGCGCCAC-GGCGCTT
gi|24 : aTACCGTATTCG-TCCTATTG-AGCGCCCCGGGCGCag
gi|3 : CAGAGGCGAATTCATTTAAGTTACAGTATTTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATATCCAT--CCCACTTTGGACACTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTATGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCGGTAATCTTT-GACTA-ATAATCCGCGGTAATAT-TTCACTAAATATTTTTGAAGAAATATTAAATTCTAAACCATTTCAGTACAAGA
gi|4 : TCCACAAC-ATGAACATAACTTTTAGAAGTTGTCATACAAAT-CCAAAACAAAA-TAATTATATTTGCCACTGT--CA-GTG--TTTCA-GTTACCCA--GGTAGGAT-TGTGGGATCACTTGGATCATTCAGA----GTCA-TGACCTCAATT----ACCCTACGAATTGTTTACT-TAAA-ATCCAGGCAGAATCATA-GT-AGAATAAT--TATTTGT--TATACATAAT----TTTG---TGTAATTA--------------AAAACACTTAAATTATATACGGCCGTTTACAG--TTTGCATTGC-TCC-ATTACT--GCTTGTA-CTC-------------------------------A-TTTC-GACTTTCGGCACTCTTTTCCTATTG-TCAGGT-----TCA--TGTTTG------TAGATTTGGTAAGAATGCCACACAAA-T-TA-G-TTATAA-T-TCAGC-T-A-TTTAT--TTTGGTGG-----AACGT-G-----TGT--C---AAACGGCGAC--ACACATCATCA-TTAAACGACATTAGG-AAAAT---CATTGCTGCACTGA-GTGAATCCTAACGCACGATC-TTC-AATAAATCTGTTAGGTTA-atttgcgaagtgcacagccaaattgtttagataacagtcgtcttgatttcctgtcgcagtcgctgatacccagcaggtatatcgtgttaatttcagcagagcacgagcttttgcagcatgtcagttttttaacagcttacttgataaattcctttgtaattgaaacttagaaacaagtcgatggtacaatatgacattaggcgttatattatgttggtactttttaaaaagtgtcggcaattatatagagcgtctagttggttaataacaatactctgaatactttagagaattacaccctctgaaatgtgttgcatgaaggttgtgtataccagtcgtttacagcaaaggcaagcactgcggaattgaggacacagcgataattt
gi|5 : ttcatttttatctatatacattttgtcaagttaacttgtgacgtgcttttgtcaataaagcacttattatatactCGTATTCG-TCCTATTG-GGCGC
gi|5 : CTAAAAT-GAATTTTCAAAGAAG---T---ATATGAT--CCTCTAGATCTAC-GCCATGAAT--GAAATCTGACAGCACTACG-T------------GTATAAACAGGAAAC---------------TTTGACTACACTGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCATTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAGATCGATATTTCAA--ATCTCATTACACAAAAAAAAAAAAA--AAAAATACCCG-TGTTCC--C-GC-TAATATA-TTGA-ATAT-AAATAGGTT-TGATAGG-TCAGTGG---------------------CTTG-A-AA--GA--C----AATCGTCAAA-ATAAATTA-TGAATGCATATATACA-------TTTCT-ATGTTTTCTTT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCCATCTACTAA--CAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatgaattttcaaagaagtatatgatcctctagatctacgccatgaatgaaatctgacagcactacgtgtataaacaggaaactttgactacactgtattattccatgtacgacttagtgaactttcattttcattttctcacagagcgattgcattatggaatttcatgttgacagagatcgatatttcaaatctcattacacaaaaaaaaaaaaaaaaaatacccgtgttcccgctaatatattgaatataaataggtttgataggtcagtggcttgaaagacaatcgtcaaaataaattatgaatgcatatatacatttctatgttttctttatacaagtacctattatgtttgctcttgccatctactaaca
gi|6 : cgtattcgtcctattgggcgcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTAGACTATGTACTTTGCGGTAAT-T-TTCACTAAACATTTTTGCAGAAATA-TAAATTCTAAATAATTA-AGTAC
gi|7 : GT--CA-GTG--TTTCAAGTT---AG--GATA---TAC------TCAC--GG----TTGAGAA-TGAACACTG-CCTCCTTGCCCCATCCTTCAAA--ACTTACTCTAAATATC--AGCATAATCATAAGTTAGAATAGT--GAGTTATACT----ACACTCTAATTTG---T-TAA-TACCCCCCCCCCCCCCAAAA----AAAA----AAACCAC----TACAGGCTTTTCATCGC-T---AT-GCCGGACGCGCA-TGTGC---TG---------TCT--TTGATAT-----TTCC-GACCTT-GGCA---TTTTCCATTTA-CAAAGCTTTAGTCAAATGTTTGACAAAATGG---------------CACACAAA-T-TG-G-TTATACAT-TTATC-A-T-TTC-TAGTTTGATGG-----AACTTTG-----TAT--C---AAAACTCAACAAACACATCATAA-T---------CTAGA-AAAAAAAACATTGCTGC----A-GTGAAT-CTAAC-TACGATCAT-------AAT-TGTTAGATTA-GAG--T--ACAGataaccaagaatttaaagaatttggctaattagttgtctgacttgtctacatcgcaggatacccacaggtgcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttgagtacaagttccgtactcggcaccgcaacctggaacatgcatattatttgtaaccgaccttgtacatgtcgtattaaaaatgatataggtctaattttgttttttgttcaataacagtacgtgaaaaatactttatggaagaaaagtgtgataccctctgatatttttattggcatgaggtaggtgtaaatcagcctttacagcaaaacacgcacgtgggaaatcaaggacatatcgcgttcaaatt
gi|8 : aCCGTTGTTCC--CTGCCTAATATGCTTGATATAT-AAATAGTTT-CGG-AGGCTCAGT----------GTTT-------TTTgaatgagtgttgaatcagag
gi|8 : GGG------GGTTA-------T------ATAAGGGAAGTATTGAATTGTCAAATATAAATTA-TGAATGCC---AT-TA-------TTTCG-ATGTTTTC-TT--ATATCCTGTACGCTATTATGGTTTGCT-TTGTCATCTACTGATACAGTCCTAACTCAACAACCATGAAGATAACTTTA-AAAGTCGTAATACGAATAA-AAAACAAAAGT---TA--TTTGCCAA-GTCCCACGTGGTTTCCAAGTT---C---GGTA---T-T------TTAC--GG----TTGAGAattcttaatgttttggggggtggggggggggggttatataagggaagtattgaattgtcaaatataaattatgaatgccattatttcgatgttttcttatatcctgtacgctattatggtttgctttgtcatctactgatacagtcctaactcaacaaccatgaagataactttaaaagtcgtaatacgaataaaaaacaaaagttatttgccaagtcccacgtggtttccaagttcggtattttacggttgaga
gi|9 : ccgttgttccctgcctaatatgcttgatatataaatagtttcggaggctcagtgttttttattcttaatgttttggggggtgggggggCGTATTTGGTCCTATTG-GGCGCCCCGGGTGTT
gi|9 : TAATAT-TAATTTTCAAAGA-G---TTCTATATACT--CCT-TA------C-TCCATGAAT--AAATACTGACAGCACTACGTTTAACGAGTGCGAGTGTAGAACAGGAACAT-CAA-TTT-CAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcatataatattaattttcaaagagttctatatactccttactccatgaataaatactgacagcactacgtttaacgagtgcgagtgtagaacaggaacatcaatttcaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACAAAATCCAATTCATCCTCAAAAAGGTCCAGAACTTGTGCATTTTTTACTTAAAACATTTTTCATGATTTGTGAAGAAAGCATGAGCAGAAGAATCCTTTGACATGAAATCA
Unaligned ( gi|18 ): TAGCCTTAGAACACAGAAACAGGTGTTGAATCGAGTGGGGGTATGTATATTTTCTAAGATGGCGATTTTCGTCCCTTGTATTCATATAATA
Unaligned ( gi|20 ): GTGTTGAACCAAGTGGGCGTACTTTGTCCAAGATGGCGACT
Unaligned ( gi|23 ): TGCTATTTTGTTACGAAATGTTTATGCTTCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2222222 11 222222 1 11 1 111 1 11 1 11 1 1 11 111 11 2222 11 33333333333333 11 1 1 2 1 1 11 1 55555555555555555555555555 11 1 1 3333333333333333 1 11111 1 1 1 11 11 2 111 11111 11 11 11 3333333 333333333333 11 1111 11 2222 1111111 11 33333333333333333333333333333333333333333333333333333333333333 111 11 1 2222 4444444444444444444444444444444444444 11 1111 11 222222 333333333333333 11111 222222222 111111111 1 11111 11 1 1 11 1 8888888888888888888888888888888888888888888888888888888888888 1 11 1 11 111 1
lowQualScore : 1 5 5 0 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 3 6666666 33 2 888888 0 33 22 3 7 99 000 8 0 7 33 0 22 0 1 0 0 0 2 7 33 000 33 66 0000 33 55555555555555 0 66 33 0 0 0 0 0 00 3 0 22222222222222222222222222 3 2 33 3 0 0 1 0 7777777777777777 0 3 77777 0 0 0 2 1 33 88 2 0 6 666 2 88888 33 9 11 8 11 0 7777777 000000000000 11 7777 22 00 2 3 0 1111 1 88 8 6666666 3 1 0 8 11 11111111111111111111111111111111111111111111111111111111111111 333 11 3 8 6666 0 1 7777777777777777777777777777777777777 8 6 11 1 8 7777 11 333333 444444444444444 5 5 888 1 5 5 99999 5 4 77777 000000000 66 777 1 4 777777777 4 777 0 99999999 5 0 888 5 5 5 11111 66 5 5 2 77 5 6666666666666666666666666666666666666666666666666666666666666 5 88 1 7 3 44 6 777 7 2
lowQualScore : . . . . . ............................................................................................................................ . . ....... .. . ...... . .. .. . . .. ... . . . .. . .. . . . . . . . .. ... .. .. .... .. .............. . .. .. . . . . . .. . . .......................... . . .. . . . . . ................ . . ..... . . . . . .. .. . . . ... . ..... .. . .. . .. . ....... ............ .. .... .. .. . . . .... . .. . ....... . . . . .. .............................................................. ... .. . . .... . . ..................................... . . .. . . .... .. ...... ............... . . ... . . . ..... . . ..... ......... .. ... . . ......... . ... . ........ . . ... . . . ..... .. . . . .. . ............................................................. . .. . . . .. . ... . .
lowQualScore : 0 7 7 7 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0000000 88 5 888888 0 88 00 3 3 55 222 8 0 3 88 0 55 2 2 0 0 2 5 0 88 222 88 88 0000 88 00000000000000 2 55 88 0 0 0 0 0 22 2 0 00000000000000000000000000 2 5 88 2 2 0 2 0 8888888888888888 0 2 88888 0 0 0 5 0 88 33 5 0 5 222 5 55555 22 8 00 0 00 8 0000000 000000000000 00 0000 55 55 5 2 2 2222 4 88 0 2222222 8 0 8 0 00 00000000000000000000000000000000000000000000000000000000000000 666 00 2 0 6666 8 4 4444444444444444444444444444444444444 0 4 00 4 0 0000 00 000000 888888888888888 0 0 222 0 0 0 22222 0 5 55555 333333333 11 888 0 4 888888888 4 888 1 77777777 0 0 000 7 7 7 22222 55 5 5 5 55 5 5555555555555555555555555555555555555555555555555555555555555 5 00 0 3 3 77 7 777 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAACAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGTT---CA--GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--T----ATAAT----TTTG---T-TAA-TA--------------AAAA----TAAATTATATACCGCAG-TTACAG--TTTGCATCGC-T-C-ATTACCGGGCGTGCA-CTTTT---CG---------TTTA-TCGATAT--AA-TTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-T-G-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
Reference ( family-93 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAACAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGTT---CA--GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--T----ATAAT----TTTG---T-TAA-TA--------------AAAA----TAAATTATATACCGCAG-TTACAG--TTTGCATCGC-T-C-ATTACCGGGCGTGCA-CTTTT---CG---------TTTA-TCGATAT--AA-TTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-T-G-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
gi|1 : ACATACCGTATTCG-TCCTATTG-GGCGCCACGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATACT--CCTCTA------C-GCCATGAAA--AAAATTTGACAGCACTACG-TTAACGAGTGTGAATGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGC-ATTATTC-CATGTACGATTTAGTGAACT-TT-CATTTTCACTTTCTCACAGGGC--GATT-GCATTA--TGAAATTTCATGTTGACAGAG----ATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAACAAAAA--AAACGT-GTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-GGGTAGG-TCAGTGGG------GGTTT-------TTTTTGCATAAGGGA--TATTAAATTGTCAAA-ATGAATTAATGAATGC----ATACA-------TTTCT-ATGTTTTC-TTTAATA-CAAGTAC-CTATTATG-TTTGCTCTTGCAATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAA------T---CAT-TTTGCTAATGT--CA-GTG--TTTCAAATT---TATAGGTA---T-T------TTAT--GG----TTGAGAAATGGGTGCTGACCTCCTTG----ACCCTGCAAAT-ATTCGCT-TAA---TC--AGCATAATCATAAGT-AGAGTGAT--GATTTGT--T-------------TTT----T-T---CA--------------AAAA----TG--TT---TACCACAT-TTACAG--CTTGCAT-GC-T-C--TTACCGAGCGTGCAGCTTTTAAACA---------TTTAATCAATAT--AAATTTC-GACTTTTCGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TATTTG------TGGG--------------CACATAAA-T-TC-A-TTATAT-T-TTATC-TTG-TTT-TCGTTTGATGGAAATTAAC---GAAGCTTCT--C---AAATGGCGACATACACATCATCG-T---------TTAGG-AAAAT---CATT--------------AGT-CTAA--CACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTATAGTA-ATATGCGTAATTT-CCGAAATACACGGAATG-TGTACAATACGCATCCCCCACTTTGGAC-CTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGTTTGTGTGTATAAT-ACGCAGCAAAAGAATTGATCGA--CCGTAATC-TT-GACT-TATAATCCGC-GTAAT-TCTTCACTAAATATTTTTGCAGAAATATTCAATTCTAAACCATTATAGTACGAGA
gi|10 : aacaaaaaaattctgatcattagaaaagttctcatgtactttactatttttatgtaataagaatacatgttcatgcaagtcatcacaaaacatgtacGA--------------CAAATAAA-TATG-C-TGATGT-T-GTACC-T-G-TTT-TGGTTTGATAG-----AAC---G-----TGTGTC---AACAGGCGAAAAACACGTCACCA-T---------TTAAG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGGCC-AATAAAG-TGTTAGTTTA-GAGTAT--ACAGAAACG
gi|11 : ggcgaggtTACGAAT-TTTTACT-TAAA-ATC--AGCAGAATCTTAAGT-AGAATAATTATATTTGT--T----ATAATAA--TTTGGTTT-TAA-TA--------------AAAAACACTAAATTATATACGGCAG-TTCCAG--TTTGCATCGC-T-CTATTACTGGGCTTGCA-T---------------------------------A-TTTC-GACTTTCGGCA--CTTTTCCTAATG-TCAGGT----GTCG--TGTTTG------TAGgtgttgaactgagtggaggtatattttccaagatggcgactttcgtcccttgtattgatt
gi|12 : AAACACATCACCA-G---------TTAAA-AAAAT---T-CCGCTGC----A--T-AAT-CTCAC-CACGATCGGCCAAATAAAT-TGT--GTTTGCGAG--TCCACAGA
gi|13 : gAGTGT-AGTGTTAAAAGAAATCATTCAACTTTTCAATTTTG-CTAC--TGT-ATTATTC--ATGTCCGACTTGGTGAACT-TTTCATTTTCACTGTATCA-AG-GC--GA-----ATTAAGTGGA--TTCATGTTGATAGAG---GATATTTCAA--ATCTCATTTGGCAAAAAaaacggtgttgagactgagtggggttattttttccaagtggcgacctttcgtacccttgtattgattatt
gi|14 : ---G-----TGT--T---AATCAGCGAAAAACACATCATCA-T---------TTAGG-AAAAT---CATTGCTAC----G-GGGACT-ATAAC-CACGATCACTC-AATAAAT-ACTTAGTTTA-AAA--T--ACAG
gi|15 : aggtG--------------CGCACAAA-T-TG-G-TGATGT-T-TTATC-T-G-TTT-TTGTTTGATAG-----AAC---A-----TGC--C---AACCGGCGACAAGAACATTATCA-T---------TTTGG-GAAAT---CATCGCTTC----A-Ggagttgttgttgaatccaacatgacgactttcgttttgt
gi|16 : tttggcgggggtGGT--------------CGCACAAACT-TG-G-TGATGT-T-TTAT----G-TTT-TCGTTTGATAG-----AAA---A-----TGC--C---AACCGCGGGCAAGAACATTATCATT---------TTTGG-GAAAT---CATCGCTTC----A-GAGTGT-TGAAC-CAagtgttgaacc
gi|19 : ggcgggGA--------------CAAACAAA-T-TG-T-TGATGT-T-GAATC-C-GTTTT-TCGTTTCGTAG-----AAC---A-----GGT--CGAAGATCGGGAACA
gi|2 : cgatttggggagatTACCGTATTCG-TCCTATTG-AGCG-CGGGGGCGCTT
gi|2 : tCTAAAATTGAATTTTCAAAGAAGTTAT---ACATGCTACCTTCTA------CGGCCATGGATTAAAATGCTGaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaatgctgttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|2 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGC--TGTTATTCTTCGCATGTACGAGTTTATGAACTCTT-CATTTTCACTTCTCCACAGAGCTTAATTTGCATTA--TGGAAATTCATGTTGACAGAA---GATATTTCAACCGCTTCATTACGCAAAAACA---------------CTCGTTGTTCCTCC-GC-TAATATGGTTGA-ATATGAAATAGGTTTCGGTAGG-TCAGTGGGTTTTATGGTTTGTTATTCTTTTTGGATAAGGGA--TATTGAATTGTCAAA-AATAATTA-TGAATGC----ATACGAATACACTTTCTCATGTTT-------ATA-CAAGTAC-ATATTGTG-TTTGCTCTTGCAATCTACTAA--CAGTC--TACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAACCAAAA-T---TAT-TTTGCTAAAGT--CA-GTG--TTTCAAGTT----A--AGTA---T-T------TTAC--GA----TTGAGAAATGGGGGCTGACCTCTTTG----ACCCTGCAAAT-ATTCACT-TAAA-----------------AAGT-AGAGTGAT--GCTTTGT--T--------C----TT-----------TA--------------AAA------AAATT---TACCACAG-TTACAG--CTTGCAT-GCGT-C--TTACCGAGCGTGCATCTTTT---CAACATTTTATTTTA-TCAATATTAAA-TTTCGGACTTCTCGCA--CTTTTCCTTTCGCCCAGGT----GTCG--TATTTG------TGGG--------------CACATGTA-T-TGCGCTTATAT-TATTGTCTT-G-TTT-TCGTTTGATGGA----AAC---G-----TCT--C---AAATGGCGACATACACATC-TCG-T---------TTTGGAAAAAT---CATTGCTGC----AGGCGAAT-CTAACACACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--ttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|21 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaaACTTACCGTATTCG-TCCTATTGAGGCGGCCCGGGCGCT
gi|22 : tgTACCGTATTCG-TCCTATTG-AGCGCCAC-GGCGCTT
gi|24 : aTACCGTATTCG-TCCTATTG-AGCGCCCCGGGCGCag
gi|3 : CAGAGGCGAATTCATTTAAGTTACAGTATTTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATATCCAT--CCCACTTTGGACACTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTATGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCGGTAATCTTT-GACTA-ATAATCCGCGGTAATAT-TTCACTAAATATTTTTGAAGAAATATTAAATTCTAAACCATTTCAGTACAAGA
gi|4 : TCCACAAC-ATGAACATAACTTTTAGAAGTTGTCATACAAAT-CCAAAACAAAA-TAATTATATTTGCCACTGT--CA-GTG--TTTCA-GTTACCCA--GGTAGGAT-TGTGGGATCACTTGGATCATTCAGA----GTCA-TGACCTCAATT----ACCCTACGAATTGTTTACT-TAAA-ATCCAGGCAGAATCATA-GT-AGAATAAT--TATTTGT--TATACATAAT----TTTG---TGTAATTA--------------AAAACACTTAAATTATATACGGCCGTTTACAG--TTTGCATTGC-TCC-ATTACT--GCTTGTA-CTC-------------------------------A-TTTC-GACTTTCGGCACTCTTTTCCTATTG-TCAGGT-----TCA--TGTTTG------TAGATTTGGTAAGAATGCCACACAAA-T-TA-G-TTATAA-T-TCAGC-T-A-TTTAT--TTTGGTGG-----AACGT-G-----TGT--C---AAACGGCGAC--ACACATCATCA-TTAAACGACATTAGG-AAAAT---CATTGCTGCACTGA-GTGAATCCTAACGCACGATC-TTC-AATAAATCTGTTAGGTTA-atttgcgaagtgcacagccaaattgtttagataacagtcgtcttgatttcctgtcgcagtcgctgatacccagcaggtatatcgtgttaatttcagcagagcacgagcttttgcagcatgtcagttttttaacagcttacttgataaattcctttgtaattgaaacttagaaacaagtcgatggtacaatatgacattaggcgttatattatgttggtactttttaaaaagtgtcggcaattatatagagcgtctagttggttaataacaatactctgaatactttagagaattacaccctctgaaatgtgttgcatgaaggttgtgtataccagtcgtttacagcaaaggcaagcactgcggaattgaggacacagcgataattt
gi|5 : ttcatttttatctatatacattttgtcaagttaacttgtgacgtgcttttgtcaataaagcacttattatatactCGTATTCG-TCCTATTG-GGCGC
gi|5 : CTAAAAT-GAATTTTCAAAGAAG---T---ATATGAT--CCTCTAGATCTAC-GCCATGAAT--GAAATCTGACAGCACTACG-T------------GTATAAACAGGAAAC---------------TTTGACTACACTGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCATTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAGATCGATATTTCAA--ATCTCATTACACAAAAAAAAAAAAA--AAAAATACCCG-TGTTCC--C-GC-TAATATA-TTGA-ATAT-AAATAGGTT-TGATAGG-TCAGTGG---------------------CTTG-A-AA--GA--C----AATCGTCAAA-ATAAATTA-TGAATGCATATATACA-------TTTCT-ATGTTTTCTTT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCCATCTACTAA--CAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatgaattttcaaagaagtatatgatcctctagatctacgccatgaatgaaatctgacagcactacgtgtataaacaggaaactttgactacactgtattattccatgtacgacttagtgaactttcattttcattttctcacagagcgattgcattatggaatttcatgttgacagagatcgatatttcaaatctcattacacaaaaaaaaaaaaaaaaaatacccgtgttcccgctaatatattgaatataaataggtttgataggtcagtggcttgaaagacaatcgtcaaaataaattatgaatgcatatatacatttctatgttttctttatacaagtacctattatgtttgctcttgccatctactaaca
gi|6 : cgtattcgtcctattgggcgcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTAGACTATGTACTTTGCGGTAAT-T-TTCACTAAACATTTTTGCAGAAATA-TAAATTCTAAATAATTA-AGTAC
gi|7 : GT--CA-GTG--TTTCAAGTT---AG--GATA---TAC------TCAC--GG----TTGAGAA-TGAACACTG-CCTCCTTGCCCCATCCTTCAAA--ACTTACTCTAAATATC--AGCATAATCATAAGTTAGAATAGT--GAGTTATACT----ACACTCTAATTTG---T-TAA-TACCCCCCCCCCCCCCAAAA----AAAA----AAACCAC----TACAGGCTTTTCATCGC-T---AT-GCCGGACGCGCA-TGTGC---TG---------TCT--TTGATAT-----TTCC-GACCTT-GGCA---TTTTCCATTTA-CAAAGCTTTAGTCAAATGTTTGACAAAATGG---------------CACACAAA-T-TG-G-TTATACAT-TTATC-A-T-TTC-TAGTTTGATGG-----AACTTTG-----TAT--C---AAAACTCAACAAACACATCATAA-T---------CTAGA-AAAAAAAACATTGCTGC----A-GTGAAT-CTAAC-TACGATCAT-------AAT-TGTTAGATTA-GAG--T--ACAGataaccaagaatttaaagaatttggctaattagttgtctgacttgtctacatcgcaggatacccacaggtgcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttgagtacaagttccgtactcggcaccgcaacctggaacatgcatattatttgtaaccgaccttgtacatgtcgtattaaaaatgatataggtctaattttgttttttgttcaataacagtacgtgaaaaatactttatggaagaaaagtgtgataccctctgatatttttattggcatgaggtaggtgtaaatcagcctttacagcaaaacacgcacgtgggaaatcaaggacatatcgcgttcaaatt
gi|8 : aCCGTTGTTCC--CTGCCTAATATGCTTGATATAT-AAATAGTTT-CGG-AGGCTCAGT----------GTTT-------TTTgaatgagtgttgaatcagag
gi|8 : GGG------GGTTA-------T------ATAAGGGAAGTATTGAATTGTCAAATATAAATTA-TGAATGCC---AT-TA-------TTTCG-ATGTTTTC-TT--ATATCCTGTACGCTATTATGGTTTGCT-TTGTCATCTACTGATACAGTCCTAACTCAACAACCATGAAGATAACTTTA-AAAGTCGTAATACGAATAA-AAAACAAAAGT---TA--TTTGCCAA-GTCCCACGTGGTTTCCAAGTT---C---GGTA---T-T------TTAC--GG----TTGAGAattcttaatgttttggggggtggggggggggggttatataagggaagtattgaattgtcaaatataaattatgaatgccattatttcgatgttttcttatatcctgtacgctattatggtttgctttgtcatctactgatacagtcctaactcaacaaccatgaagataactttaaaagtcgtaatacgaataaaaaacaaaagttatttgccaagtcccacgtggtttccaagttcggtattttacggttgaga
gi|9 : ccgttgttccctgcctaatatgcttgatatataaatagtttcggaggctcagtgttttttattcttaatgttttggggggtgggggggCGTATTTGGTCCTATTG-GGCGCCCCGGGTGTT
gi|9 : TAATAT-TAATTTTCAAAGA-G---TTCTATATACT--CCT-TA------C-TCCATGAAT--AAATACTGACAGCACTACGTTTAACGAGTGCGAGTGTAGAACAGGAACAT-CAA-TTT-CAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcatataatattaattttcaaagagttctatatactccttactccatgaataaatactgacagcactacgtttaacgagtgcgagtgtagaacaggaacatcaatttcaa
blockSeqs : T G A G T A TTAT AC C GATCTA G TA TG T T CG ATT C T A AC T GC G C T C A TT TTT AG AA ATCG CC AAAAAAAAAAAT TT TC T C G T G TC T C GTTTTATGGTTTGTTATTCTTTTTGG T G AG A T T . ATACGAATACAC C T TTT T G G C A TA CT C C G CC C TAAT TA A CC C GT ACCCA GGATTGTGGGA TT ATCA AA C A CCCC A TT C AATCCA G T T TA ACTACACTCTAATTTGTTAATACCCCCCCCCCCCCCAAAAAAAAA CGT GC C G CTA G TCTTTTCAACATTTTATTTTATCAATATTAAA G C CT A C TTTA AA ACAAAA ATTTGGTAAGAATGC C A CGC G A A CGT A G A TTTG GT GAA C T TAAACGACA A AAA ACTGAGT C A GGC A C C TAT TT A T C . A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A GT G T A AT G AT T C
blockSeqs : . . C . A TTCT . C . . . AT . . T AT . . . . . C T . . C A . TT . AT G . . TT . . . C . . T T . GGGTTAT T G . A . A . ATATATACA . T TT . . . C C . . C G A AA C GT T T . . . AG TAC . . A C A . G T . ATATC G A . . TATACATAATTTTGTGTAATTAAAAACACTTAAATTATA AG . T . CCA A TGTGCTGTCTTTGATAT . T . T . . . . A . . C G . . TTG . T . GTG . . T . . . . AGGC . G GGC . . . TCC T . A G T . .
blockSeqs : . . A . . T . . . . . TA . . . . . . . A . . . . . . . . G . T . . . . . . C . . CTTG . . . . . A . CATTA . . . . . . . C . . . . C C T . . . . . A TT . . . . . . A T . AATC T A . . TATAATAATTTGGTTTTAATAAAAAACACTAAATTATA AG . C . C G CTCA . C . A . . . . G . . G G . . TG . C . G . . C . . . . AGT . . ACT . . . T
blockSeqs : . . C . . . C TT . . T . . A . . . . TCTTTAAAAAAATT . . . . A . TA . . . T . . . . T . . G G . . TG . C . G . . C . . . . GGG . . ATC . . . T
blockSeqs : . . C A . . T T . . TA . C . A . . T . . . . AGA . . TT . . .
blockSeqs : . . G . . G T . . AT . A . A . . A . . . . AGT . . AT . . .
blockSeqs : . . . G T . . G . . . A . . A . . . . AT . .
blockSeqs : G . . A . . . .
blockSeqCons : A****** AATC*** CA** TCCG********************************* TG*** ***** G******** AGN*****
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAACAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGTT---CA--GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--T----ATAAT----TTTG---T-TAA-TA--------------AAAA----TAAATTATATACCGCAG-TTACAG--TTTGCATCGC-T-C-ATTACCGGGCGTGCA-CTTTT---CG---------TTTA-TCGATAT--AA-TTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-T-G-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGC----A-GTGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAACAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGTTA------GGTA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAAATC---AGCANAATCATAAGT-AGAATAAT--GATTTGT--T----ATAAT----TTTG---T-TAA-TA--------------AAAA----TAAATTATATACCGCAG-TTACAG--TTTGCATCGC-TCA--TTACCGGGCGTGCATCCG---------------------------------TTTC-GACTTTCGGCA--CTTTTCCTTTCG-CCAGGT----GTCG--TGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATCTG---TTT-TCGTTTGATGG-----AACG--------TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAGG-AAAAT---CATCGCTGCAGN-----GAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACAAAATCCAATTCATCCTCAAAAAGGTCCAGAACTTGTGCATTTTTTACTTAAAACATTTTTCATGATTTGTGAAGAAAGCATGAGCAGAAGAATCCTTTGACATGAAATCA
Unaligned ( gi|18 ): TAGCCTTAGAACACAGAAACAGGTGTTGAATCGAGTGGGGGTATGTATATTTTCTAAGATGGCGATTTTCGTCCCTTGTATTCATATAATA
Unaligned ( gi|20 ): GTGTTGAACCAAGTGGGCGTACTTTGTCCAAGATGGCGACT
Unaligned ( gi|23 ): TGCTATTTTGTTACGAAATGTTTATGCTTCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2222222 11 222222 1 11 1 111 1 11 1 11 1 1 11 111 11 2222 11 33333333333333 11 1 1 2 1 1 11 1 55555555555555555555555555 11 1 1 3333333333333333 1 11111 1 1 1 11 11 2 222 11111 11 11 11 111111111 333333333333 11 1111 11 2222 11 11 33333333333333333333333333333333333333333333333333333333333333 11 1 222 55555555555555555555555555555555555555555555555555555555555555555555555555555555 11 1111 11 333333333333333333333333 1 11111 222222222 111111111 11111111 11111 11 1 1 11 1 8888888888888888888888888888888888888888888888888888888888888 1 11 1 11 111 1
lowQualScore : 1 5 5 0 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 3 6666666 33 2 888888 0 33 22 3 7 99 000 8 0 7 33 0 22 0 1 0 0 0 2 7 33 000 33 66 0000 33 55555555555555 0 66 33 0 0 0 0 0 00 3 0 22222222222222222222222222 3 2 33 3 0 0 1 0 7777777777777777 0 3 77777 0 0 0 2 1 33 88 2 0 6 888 3 88888 33 9 11 8 11 0 777777777 8 000000000000 11 7777 22 00 2 3 0 1111 1 88 8 0 88 11 3 1 0 8 11 11111111111111111111111111111111111111111111111111111111111111 5 8 11 3 8 777 6 11111111111111111111111111111111111111111111111111111111111111111111111111111111 11 1 8 7777 11 666666666666666666666666 5 5 888 1 5 5 0 5 5 4 77777 000000000 66 777 1 4 777777777 777 4 0 11111111 4 8 888 5 5 5 11111 66 5 5 2 77 5 6666666666666666666666666666666666666666666666666666666666666 5 88 1 7 3 44 6 777 7 2
lowQualScore : . . . . . ............................................................................................................................ . . ....... .. . ...... . .. .. . . .. ... . . . .. . .. . . . . . . . .. ... .. .. .... .. .............. . .. .. . . . . . .. . . .......................... . . .. . . . . . ................ . . ..... . . . . . .. .. . . . ... . ..... .. . .. . .. . ......... . ............ .. .... .. .. . . . .... . .. . . .. .. . . . . .. .............................................................. . . .. . . ... . ................................................................................ .. . . .... .. ........................ . . ... . . . . . . . ..... ......... .. ... . . ......... ... . . ........ . . ... . . . ..... .. . . . .. . ............................................................. . .. . . . .. . ... . .
lowQualScore : 0 7 7 7 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0000000 88 5 888888 0 88 00 3 3 55 222 8 0 3 88 0 55 2 2 0 0 2 5 0 88 222 88 88 0000 88 00000000000000 2 55 88 0 0 0 0 0 22 2 0 00000000000000000000000000 2 5 88 2 2 0 2 0 8888888888888888 0 2 88888 0 0 0 5 0 88 33 5 0 5 888 0 55555 22 8 00 0 00 8 888888888 0 000000000000 00 0000 55 55 5 2 2 2222 4 88 0 8 88 00 8 0 8 0 00 00000000000000000000000000000000000000000000000000000000000000 6 0 00 2 0 444 4 88888888888888888888888888888888888888888888888888888888888888888888888888888888 00 4 0 0000 00 222222222222222222222222 0 0 222 0 0 0 0 0 0 5 55555 333333333 11 888 0 4 888888888 888 4 1 77777777 4 9 000 7 7 7 22222 55 5 5 5 55 5 5555555555555555555555555555555555555555555555555555555555555 5 00 0 3 3 77 7 777 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAACAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGT---TA----GG-TA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--TATA----AT----TTTG---T-TAAT-A--------------AAAA----TAAATTATATACCGCAGTT-ACAG--TTTGCATCGC-TC-ATTACCGGGCGTGCAT---CT----------------------A----------TTTCGAC----------------------TTTCG--------GCA--CTTTTCCTTTCG-CCAGGT----GTC--GTGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-TG-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAG---G-AAAATCATCGCTGC----A-GNGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
Reference ( family-93 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACNTACCGTATTCG-TCCTATTG-GGCGCCNCGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATGCT--CCTCTA------C-GCCATGAAT--AAANNCTGACAGCACTACG-TTAACGAGTGTGAGTGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCACTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAG---GATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAA--AAAA--ACCCGTTGTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-CGGTAGG-TCAGTGGG------GGTTT-------TTTTTG-ATAAGGGA--TATTGAATTGTCAAA-ATAAATTA-TGAATGC----ATACA-------TTTCT-ATGTTTTC-TT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCNATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAAACAAAA-T---TAT-TTTGCCAATGT--CA-GTG--TTTCAAGT---TA----GG-TA---T-T------TTAC--GG----TTGAGAAATGGGCGCTGACCTCCTTG----ACCCTGCGAAT-ATTTACT-TAAA-ATC--AGCANAATCATAAGT-AGAATAAT--GATTTGT--TATA----AT----TTTG---T-TAAT-A--------------AAAA----TAAATTATATACCGCAGTT-ACAG--TTTGCATCGC-TC-ATTACCGGGCGTGCAT---CC----------------------G----------TTTCGAC----------------------TTTCG--------GCA--CTTTTCCTTTCG-CCAGGT----GTC--GTGTTTG------TGGG--------------CACACAAA-T-TG-G-TNATGT-T-TTATC-TG-TTT-TCGTTTGATGG-----AAC---G-----TGT--C---AANCGGCGACAAACACATCATCA-T---------TTAG---G-AAAATCATCGCTGC----A-GNGAAT-CTAAC-CACGATCGTCC-AATAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTACAGTATNTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATACGCATCCCCCACTTTGGACACTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTGTGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCNGTAATCTTT-GACTATATAATCCGCGGTAAT-T-TTCACTAAATATTTTTGCAGAAATATTAAATTCTAAACCATTACAGTACGAGA
gi|1 : ACATACCGTATTCG-TCCTATTG-GGCGCCACGGGCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAAT-GAATTTTCAAAGAAG---T---ATATACT--CCTCTA------C-GCCATGAAA--AAAATTTGACAGCACTACG-TTAACGAGTGTGAATGTAAAAAGGAAACAT-CAACTTT-CAATTTTGACTAC--TGC-ATTATTC-CATGTACGATTTAGTGAACT-TT-CATTTTCACTTTCTCACAGGGC--GATT-GCATTA--TGAAATTTCATGTTGACAGAG----ATATTTCAA--ATCTCATTACGCAAAAAAAAAAAAACAAAAA--AAACGT-GTTCC--C-GC-TAATATG-TTGA-ATAT-AAATAGGTT-GGGTAGG-TCAGTGGG------GGTTT-------TTTTTGCATAAGGGA--TATTAAATTGTCAAA-ATGAATTAATGAATGC----ATACA-------TTTCT-ATGTTTTC-TTTAATA-CAAGTAC-CTATTATG-TTTGCTCTTGCAATCTACTAA--CAGTC--AACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-------CAAAA-T---CAT-TTTGCTAATGT--CA-GTG--TTTCAAATTTATA----GG-TA---T-T------TTAT--GG----TTGAGAAATGGGTGCTGACCTCCTTG----ACCCTGCAAAT-ATTCGCT-T--A-ATC--AGCATAATCATAAGT-AGAGTGAT--GATTTGT--T-T------T----TTT---------C-A--------------AAAA----T--GTT---TACCACATTT-ACAG--CTTGCAT-GC-TC--TTACCGAGCGTGCAG---CTTTTAAACATTTAATCAATATAAA----------TTTCGAC----------------------TTTTC--------GCA--CTTTTCCTTTCG-CCAGGT----GTC--GTATTTG------TGGG--------------CACATAAA-T-TC-A-TTATAT-T-TTATCTTG-TTT-TCGTTTGATGGAAATTAAC---GAAGCTTCT--C---AAATGGCGACATACACATCATCG-T---------TTAG---G-AAAATCATT--------------AGT-CTAA--CACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--T--ACAGAGGCGAATTCATTTAAGTTATAGTA-ATATGCGTAATTT-CCGAAATACACGGAATG-TGTACAATACGCATCCCCCACTTTGGAC-CTGAAAATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGTTTGTGTGTATAAT-ACGCAGCAAAAGAATTGATCGA--CCGTAATC-TT-GACT-TATAATCCGC-GTAAT-TCTTCACTAAATATTTTTGCAGAAATATTCAATTCTAAACCATTATAGTACGAGA
gi|10 : aacaaaaaaattctgatcattagaaaagttctcatgtactttactatttttatgtaataagaatacatgttcatgcaagtcatcacaaaacatgtacGA--------------CAAATAAA-TATG-C-TGATGT-T-GTACC-TG-TTT-TGGTTTGATAG-----AAC---G-----TGTGTC---AACAGGCGAAAAACACGTCACCA-T---------TTAA---G-AAAATCATCGCTGC----A-GTGAAT-CTAAC-CACGATCGGCC-AATAAAG-TGTTAGTTTA-GAGTAT--ACAGAAACG
gi|11 : ggcgaggtTACGAAT-TTTTACT-TAAA-ATC--AGCAGAATCTTAAGT-AGAATAATTATATTTGT--TATA----ATAA--TTTGGTTT-TAAT-A--------------AAAAACACTAAATTATATACGGCAGTT-CCAG--TTTGCATCGC-TCTATTACTGGGCTTGCAT---------------------------A----------TTTCGAC----------------------TTTCG--------GCA--CTTTTCCTAATG-TCAGGT----GTC--GTGTTTG------TAGgtgttgaactgagtggaggtatattttccaagatggcgactttcgtcccttgtattgatt
gi|12 : AAACACATCACCA-G---------TTAA---A-AAAATT-CCGCTGC----A---TAAT-CTCAC-CACGATCGGCCAAATAAAT-TGT--GTTTGCGAG--TCCACAGA
gi|13 : gAGTGT-AGTGTTAAAAGAAATCATTCAACTTTTCAATTTTG-CTAC--TGT-ATTATTC--ATGTCCGACTTGGTGAACT-TTTCATTTTCACTGTATCA-AG-GC--GA-----ATTAAGTGGA--TTCATGTTGATAGAG---GATATTTCAA--ATCTCATTTGGCAAAAAaaacggtgttgagactgagtggggttattttttccaagtggcgacctttcgtacccttgtattgattatt
gi|14 : ---G-----TGT--T---AATCAGCGAAAAACACATCATCA-T---------TTAG---G-AAAATCATTGCTAC----G-GGGACT-ATAAC-CACGATCACTC-AATAAAT-ACTTAGTTTA-AAA--T--ACAG
gi|15 : aggtG--------------CGCACAAA-T-TG-G-TGATGT-T-TTATC-TG-TTT-TTGTTTGATAG-----AAC---A-----TGC--C---AACCGGCGACAAGAACATTATCA-T---------TTTG---G-GAAATCATCGCTTC----A-GAGTGT-TGAAC-Cgagttgttgttgaatccaacatgacgactttcgttttgt
gi|16 : tttggcgggggtGGT--------------CGCACAAACT-TG-G-TGATGT-T-TTAT---G-TTT-TCGTTTGATAG-----AAA---A-----TGC--C---AACCGCGGGCAAGAACATTATCATT---------TTTG---G-GAAATCATCGCTTC----A-GAGTGT-TGAAC-CA
gi|19 : ggcgggGA--------------CAAACAAA-T-TG-T-TGATGT-T-GAATC-CGTTTT-TCGTTTCGTAG-----AAC---A-----GGT--CGAAGATCGGGAACA
gi|2 : cgatttggggagatTACCGTATTCG-TCCTATTG-AGCG-CGGGGGCGCTT
gi|2 : tCTAAAATTGAATTTTCAAAGAAGTTAT---ACATGCTACCTTCTA------CGGCCATGGATTAAAATGCTGaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaatgctgttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|2 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGC--TGTTATTCTTCGCATGTACGAGTTTATGAACTCTT-CATTTTCACTTCTCCACAGAGCTTAATTTGCATTA--TGGAAATTCATGTTGACAGAA---GATATTTCAACCGCTTCATTACGCAAAAACA---------------CTCGTTGTTCCTCC-GC-TAATATGGTTGA-ATATGAAATAGGTTTCGGTAGG-TCAGTGGGTTTTATGGTTTGTTATTCTTTTTGGATAAGGGA--TATTGAATTGTCAAA-AATAATTA-TGAATGC----ATACGAATACACTTTCTCATGTTT-------ATA-CAAGTAC-ATATTGTG-TTTGCTCTTGCAATCTACTAA--CAGTC--TACTCAACAACCATGAA-ATAACTTTAGAAAGTTGTCATACGAAT-C-AAACCAAAA-T---TAT-TTTGCTAAAGT--CA-GTG--TTTCAAGT---TA----AG-TA---T-T------TTAC--GA----TTGAGAAATGGGGGCTGACCTCTTTG----ACCCTGCAAAT-ATTCACT-TAAA-----------------AAGT-AGAGTGAT--GCTTTGT--T--------C----TT----------T-A--------------AAA------AAATT---TACCACAGTT-ACAG--CTTGCAT-GCGTC--TTACCGAGCGTGCAT---CT---------------------------------TTTCAACATTTTATTTTATCAATATTAAATTTCGGACTTCTCGCA--CTTTTCCTTTCGCCCAGGT----GTC--GTATTTG------TGGG--------------CACATGTA-T-TGCGCTTATAT-TATTGTCTTG-TTT-TCGTTTGATGGA----AAC---G-----TCT--C---AAATGGCGACATACACATC-TCG-T---------TTTG---GAAAAATCATTGCTGC----AGGCGAAT-CTAACACACGATCATCC-AACAAAT-TGTTAGTTTA-GAG--ttattcttcgcatgtacgagtttatgaactcttcattttcacttctccacagagcttaatttgcattatggaaattcatgttgacagaagatatttcaaccgcttcattacgcaaaaacactcgttgttcctccgctaatatggttgaatatgaaataggtttcggtaggtcagtgggttttatggtttgttattctttttggataagggatattgaattgtcaaaaataattatgaatgcatacgaatacactttctcatgtttatacaagtacatattgtgtttgctcttgcaatctactaacagtctactcaacaaccatgaaataactttagaaagttgtcatacgaatcaaaccaaaattattttgctaaagtcagtgtttcaagttaagtattttacgattgagaaatgggggctgacctctttgaccctgcaaatattcacttaaaaagtagagtgatgctttgttctttaaaaaaatttaccacagttacagcttgcatgcgtcttaccgagcgtgcatcttttcaacattttattttatcaatattaaatttcggacttctcgcacttttcctttcgcccaggtgtcgtatttgtgggcacatgtattgcgcttatattattgtcttgttttcgtttgatggaaacgtctcaaatggcgacatacacatctcgttttggaaaaatcattgctgcaggcgaatctaacacacgatcatccaacaaattgttagtttagag
gi|21 : ttaccgtattcgtcctattgagcgcgggggcgcttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaattgaattttcaaagaagttatacatgctaccttctacggccatggattaaaaACTTACCGTATTCG-TCCTATTGAGGCGGCCCGGGCGCT
gi|22 : tgTACCGTATTCG-TCCTATTG-AGCGCCAC-GGCGCTT
gi|24 : aTACCGTATTCG-TCCTATTG-AGCGCCCCGGGCGCag
gi|3 : CAGAGGCGAATTCATTTAAGTTACAGTATTTATGCGTAATTTACCGAAATACACGGAACGTTGTACAATATCCAT--CCCACTTTGGACACTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAGTTTATGTGTATAATAACGCAGCGAAAGAATTGATCGAGTCGGTAATCTTT-GACTA-ATAATCCGCGGTAATAT-TTCACTAAATATTTTTGAAGAAATATTAAATTCTAAACCATTTCAGTACAAGA
gi|4 : TCCACAAC-ATGAACATAACTTTTAGAAGTTGTCATACAAAT-CCAAAACAAAA-TAATTATATTTGCCACTGT--CA-GTG--TTTCA-GT---TACCCAGG-TAGGAT-TGTGGGATCACTTGGATCATTCAGA----GTCA-TGACCTCAATT----ACCCTACGAATTGTTTACT-TAAA-ATCCAGGCAGAATCATA-GT-AGAATAAT--TATTTGT--TATACATAAT----TTTG---TGTAATTA--------------AAAACACTTAAATTATATACGGCCGTTTACAG--TTTGCATTGC-TCCATTACTG--CTTGTAC---TC----------------------A----------TTTCGAC----------------------TTTCG--------GCACTCTTTTCCTATTG-TCAGGT-----TC--ATGTTTG------TAGATTTGGTAAGAATGCCACACAAA-T-TA-G-TTATAA-T-TCAGC-TA-TTTAT--TTTGGTGG-----AACGT-G-----TGT--C---AAACGGCGAC--ACACATCATCA-TTAAACGACATTAG---G-AAAATCATTGCTGCACTGA-GTGAATCCTAACGCACGATC-TTC-AATAAATCTGTTAGGTTA-atttgcgaagtgcacagccaaattgtttagataacagtcgtcttgatttcctgtcgcagtcgctgatacccagcaggtatatcgtgttaatttcagcagagcacgagcttttgcagcatgtcagttttttaacagcttacttgataaattcctttgtaattgaaacttagaaacaagtcgatggtacaatatgacattaggcgttatattatgttggtactttttaaaaagtgtcggcaattatatagagcgtctagttggttaataacaatactctgaatactttagagaattacaccctctgaaatgtgttgcatgaaggttgtgtataccagtcgtttacagcaaaggcaagcactgcggaattgaggacacagcgataattt
gi|5 : ttcatttttatctatatacattttgtcaagttaacttgtgacgtgcttttgtcaataaagcacttattatatactCGTATTCG-TCCTATTG-GGCGC
gi|5 : CTAAAAT-GAATTTTCAAAGAAG---T---ATATGAT--CCTCTAGATCTAC-GCCATGAAT--GAAATCTGACAGCACTACG-T------------GTATAAACAGGAAAC---------------TTTGACTACACTGT-ATTATTC-CATGTACGACTTAGTGAACT-TT-CATTTTCATTTTCTCACAGAGC--GATT-GCATTA--TGGAATTTCATGTTGACAGAGATCGATATTTCAA--ATCTCATTACACAAAAAAAAAAAAA--AAAAATACCCG-TGTTCC--C-GC-TAATATA-TTGA-ATAT-AAATAGGTT-TGATAGG-TCAGTGG---------------------CTTG-A-AA--GA--C----AATCGTCAAA-ATAAATTA-TGAATGCATATATACA-------TTTCT-ATGTTTTCTTT--ATA-CAAGTAC-CTATTATG-TTTGCTCTTGCCATCTACTAA--CAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatgaattttcaaagaagtatatgatcctctagatctacgccatgaatgaaatctgacagcactacgtgtataaacaggaaactttgactacactgtattattccatgtacgacttagtgaactttcattttcattttctcacagagcgattgcattatggaatttcatgttgacagagatcgatatttcaaatctcattacacaaaaaaaaaaaaaaaaaatacccgtgttcccgctaatatattgaatataaataggtttgataggtcagtggcttgaaagacaatcgtcaaaataaattatgaatgcatatatacatttctatgttttctttatacaagtacctattatgtttgctcttgccatctactaaca
gi|6 : cgtattcgtcctattgggcgcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTAGACTATGTACTTTGCGGTAAT-T-TTCACTAAACATTTTTGCAGAAATA-TAAATTCTAAATAATTA-AGTAC
gi|7 : GT--CA-GTG--TTTCAAGT---TA----GGATA---TAC------TCAC--GG----TTGAGAA-TGAACACTG-CCTCCTTGCCCCATCCTTCAAA--ACTTACTCTAAATATC--AGCATAATCATAAGTTAGAATAGT--GAGTTATACTACA----CTCTAATTTG---T-TAAT-ACCCCCCCCCCCCCCAAAA----AAAA----AAACCAC---T-ACAGGCTTTTCATCGC-T--A-TGCCGGACGCGCATGTGCT----------------------GTCTTTGATATTTCCGAC----------------------CTT-G--------GCA---TTTTCCATTTA-CAAAGCTTTAGTCAAATGTTTGACAAAAT-GG--------------CACACAAA-T-TG-G-TTATACAT-TTATC-AT-TTC-TAGTTTGATGG-----AACTTTG-----TAT--C---AAAACTCAACAAACACATCATAA-T---------CTAGAAAA-AAAAACATTGCTGC----A-GTGAAT-CTAAC-TACGATCAT-------AAT-TGTTAGATTA-GAG--T--ACAGataaccaagaatttaaagaatttggctaattagttgtctgacttgtctacatcgcaggatacccacaggtgcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttgagtacaagttccgtactcggcaccgcaacctggaacatgcatattatttgtaaccgaccttgtacatgtcgtattaaaaatgatataggtctaattttgttttttgttcaataacagtacgtgaaaaatactttatggaagaaaagtgtgataccctctgatatttttattggcatgaggtaggtgtaaatcagcctttacagcaaaacacgcacgtgggaaatcaaggacatatcgcgttcaaatt
gi|8 : aCCGTTGTTCC--CTGCCTAATATGCTTGATATAT-AAATAGTTT-CGG-AGGCTCAGT----------GTTT-------TTTgaatgagtgttgaatcagag
gi|8 : GGG------GGTTA-------T------ATAAGGGAAGTATTGAATTGTCAAATATAAATTA-TGAATGCC---AT-TA-------TTTCG-ATGTTTTC-TT--ATATCCTGTACGCTATTATGGTTTGCT-TTGTCATCTACTGATACAGTCCTAACTCAACAACCATGAAGATAACTTTA-AAAGTCGTAATACGAATAA-AAAACAAAAGT---TA--TTTGCCAA-GTCCCACGTGGTTTCCAAGT---TC----GG-TA---T-T------TTAC--GG----TTGAGAattcttaatgttttggggggtggggggggggggttatataagggaagtattgaattgtcaaatataaattatgaatgccattatttcgatgttttcttatatcctgtacgctattatggtttgctttgtcatctactgatacagtcctaactcaacaaccatgaagataactttaaaagtcgtaatacgaataaaaaacaaaagttatttgccaagtcccacgtggtttccaagttcggtattttacggttgaga
gi|9 : ccgttgttccctgcctaatatgcttgatatataaatagtttcggaggctcagtgttttttattcttaatgttttggggggtgggggggCGTATTTGGTCCTATTG-GGCGCCCCGGGTGTT
gi|9 : TAATAT-TAATTTTCAAAGA-G---TTCTATATACT--CCT-TA------C-TCCATGAAT--AAATACTGACAGCACTACGTTTAACGAGTGCGAGTGTAGAACAGGAACAT-CAA-TTT-CAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcatataatattaattttcaaagagttctatatactccttactccatgaataaatactgacagcactacgtttaacgagtgcgagtgtagaacaggaacatcaatttcaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACAAAATCCAATTCATCCTCAAAAAGGTCCAGAACTTGTGCATTTTTTACTTAAAACATTTTTCATGATTTGTGAAGAAAGCATGAGCAGAAGAATCCTTTGACATGAAATCA
Unaligned ( gi|18 ): TAGCCTTAGAACACAGAAACAGGTGTTGAATCGAGTGGGGGTATGTATATTTTCTAAGATGGCGATTTTCGTCCCTTGTATTCATATAATA
Unaligned ( gi|20 ): GTGTTGAACCAAGTGGGCGTACTTTGTCCAAGATGGCGACT
Unaligned ( gi|23 ): TGCTATTTTGTTACGAAATGTTTATGCTTCAAAT