lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 3333333333333333333333333 111111 3333333333333333333 1111 1 222 3333333 11111 33333333 11111 888888888888888888888888888888888888888888888888 11 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7777777777777 6666666666666666666666666 222222222 222 1 11 3333
lowQualScore : 1 88 1 555 1 1 1 4 9999999999999999999999999 33 555 7 0 66 3 666666 77 9999999999999999999 1 99 4444 1 0 5 222 6666666 7 66666 88888 55555555 88888 8 444444444444444444444444444444444444444444444444 6 44 2 4 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 2222222222222 3 2 6 4 1111111111111111111111111 6 6 666666666 666 6 3 9 4 7 6666 5 4 3 2 44 1 1111
lowQualScore : . .. . ... . . . . ......................... .. ... . . .. . ...... .. ................... . .. .... . . . ... ....... . ..... ..... ........ ..... . ................................................ . .. . . ................................................................................................................................................................................................................................. . ............. . . . . ......................... . . ......... ... . . . . . .... . . . . .. . ....
lowQualScore : 9 88 9 222 9 9 9 0 2222222222222222222222222 22 666 1 8 55 3 444444 99 3333333333333333333 0 22 2222 0 8 2 777 3333333 5 77777 88888 88888888 44444 0 222222222222222222222222222222222222222222222222 0 55 5 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 0000000000000 0 5 0 0 5555555555555555555555555 0 0 555555555 222 7 5 8 4 4 1111 4 2 8 1 22 5 2222
consensus : TCTTCACAAGTC-AAGG-G-TT---A-T-TGAT-TCGTT-ACCTCGC-----------AC-------T----A--ACCCTTGACATCAGTCACCATTCGAAACGTGGGC-TCGAGACGGAG------GATGACG--CAATACGCTA-AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGNTCCTTTT--CTCAACATCATGA-ACATTG---CGTGCT-A-T----TTT-------------AT------------TTATGATTCACATTTTCCGCCNTNTAATTGCTGTAGCTTATTATTTAGTTCATGGTCAATGTTG-AANANCGCGNTCGACTTGTTGAGACNTACNTNGGCACCCATACCAGAACTATCCGCCGTTTTCAATNCNGCCNGTGTCCTAAAACTTCGCATAATTGTTTCTTTAAAGAAAATANANTNCTGNAAATCNATCTACGAAATCNGCGNNGGCCTTATGGTANCTGGCAACAAATTC-----CATGTTGCCAGACNCCGCGCNACGCGTGTTTGGTTTCATTTTNGGCNGATCACANAAGTCATTTTCTGATNGGNNCTANTGNTGCAGGCCACNGNNCCAATCATATTCTCCG-TCTCGAGCCCATGTTTCGAATGGTGACTGATGT-CAAGGGTTA----GTGCGAGGT-AACGAATCAA-TAA--CCCTNG--ACTTGTGAA
Reference ( gi|4 ) : TCTTCACAAGTC-AAGA-G-TT---A-T-TGAT-TCGTT-ACCTCGC-----------AC-------C----A--ACCCTTGACATCGGTCACCATTCAAGACATGGGT-TTGAGACAGAG------GATGATG--CAATACACTA-AAA----------TTAAATCAGC--CAAT----GAGATTCCTGGTTTCAGAT-GTAAGTTTGGTAAGGAGCA-TAAACAGAAAGTACAAA-----ATG-GTCTTATGTGGGGTATTTTT--CTCAACATCATGA-ACATTC---CATGCC-A-T----TTT-------------AT------------TCATAATTCACATTTTCCATCCTTTAATTGTTGGTGCT---------GTTT--------TATTGAAAAAACATAATCAAC-------AACATACATTGACA--------------ATCCGTGGTTT-C-ATGTGGCTTGTATTTTGAAATTTTGTCTAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCT-----ATCGGTGTAG------TGGTAACTAGCCGTAAATTCTACGCCATGTT-TAAGACGCCGCACCATGCATTTGTGGTAAAATTTTTGGCCGATTGTAAAAGCTGTTTTTTGATTGGGTCT-CTGATACAAGCAGCAAAACCAATCATATGCTCCG-TTTAGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTA----GTGTGAGGT-AACAAATCAA-TAA--CCTTAT--ACTTGTGAA
gi|5 : TCTTCGCAAGTC-A---------------TGG----GTT-GCTTCGC-----------AC-------T----A----CTTTGACATCAGTTACCATTCAAAGCGTGGGG-TTGAGACGGAG------GATGACG--CAATACGT-------------------------C--CTAT----GAGATTCCTCGTTTTAGAT-GCAGGTTTGGTAA-GCGCA-TAAACGGAAAGTAAAAA-----ACA-A----AT----GGTCTTTCT--C-CAACATCATGA-ACATTG---CATGTTGA-TTTTATTT-------------AT------------TTATGATTTACAATTTTCACCATTTAATTGCTGTAGCTTATTATTTAGTTCATGGTCAATATTG-AATACCGTGTTCAATTTGTTGAAACATA-ATCGACACCCATACCAGAACTATCCGCCGTTT-TAATTCTGCCAGTATCCTAAAACTTTGCATAATTATTTCTTTAAAGAAAATAAAATGCTGAAAATCCATCTACGAAATCCGCCAAG------TGGTATCTA
gi|8 : aTCTTCACAAGTC-AATATG-TT---A-T-TGAT-GTGTT-ACCTCGC-----------TC-------T----A--ACTATTGACATCAGTCTCCATTTAAAACATCGGC-TCAAGGCGGAG------AAT-ATG--cacatgtcaccgacgccgtgcct
gi|14 : acatgttgccagcaccgcacaatgcatgttagtttcatttttggcagattacaaaagtcattttctgattggttctatgctgcagactacaactccagtTCTTCACAAGTC-AAGG-G-TT---A-T-TGAT-TCGTT-ACCTCGC-----------ATTCAA---T----A--ACCCTTGt
gi|15 : aTCTTCACAAGTC-AAGG-A-TT---A-T-AGAT-TTGTT-ACCTTGC-----------AC-------T----A--A
gi|11 : TCTTCACAAGTC-AAGG-G--T---A-T-TGAT-TCGTTAACCTCGCGAGGTA-----ACGAATCAAT----A--ACCCTTGACtg
gi|16 : caTCTGCACAAGTC-AAAG-G-TT---A-T-TGAT-TCTTT-ACCTTGC-----------AC-------T----A--ttgt
gi|18 : TCTTC-CAAGTC-AAGG-G-TTT--A-C-TGAT-TCGTT-ACCTCGC-----------t
gi|3 : CTTGACAAGTC-TAGA-G-TT---A-T-TGAT-TCGTT-ACCTCGC-----------AC-------T----A--ACCCTTGACATCAGTCACCATTCAAAACATGAGT-TCAAGATTGGA------GATGATT--CAATACGCT--AAA----------TGGAATCAGC--CAAT----GAGATTTCTTGTTT--GAT-----ATTAGGTAA-AAGCA-CAAATGAAAAGTACAAAAACACATGTATCTTACGT-GGGCCCTTTT--CTCAACATCACGA-ACAATG---TGCGCT-AGT----TTT-------------AT------------T
gi|10 : CTTCACAAGTC-AAGG-G-TT---A-T-TGAT-TCGTT-ATCTCGC-----------AC-------T----A--ACtgaaacgtacatgtaattaatatatcacttttaggtccgttaattgctattataacttatcatttcgtacataattaattttaaaataaaaataaatattaacgtgtataatttgttaaaacacaatagacgacttacttgggcaatctgttgttttcatgcggcttgtgttctaaaacttcgtttgatattttttgcaaattaatctatggtgttggccttatggtaactggcaacaaattcgatcccgcgccacgtgtgtttggtttgggccgatcatataatatatggaggctacatgcaggccactgaacaatcactttgagcccatgttttgaatggtgcatgtgtcaagggttagtgtaaggtaacgaaccaattaacccttgacttgtg
gi|17 : CTTCACAAGTCCAAGG-A-TT---A-T-AGAT-TTGTT-ACCTgttagtgtaaggtaacgaatcaataacccttgacttatga
gi|13 : agtgaTTCACAAGTC-AAGG-GTTT---A-T-TGAT-T-GTT-ACCTCGC-----------
gi|12 : aagttaagggttattgattcgttacctcTTCACAAGTC-AAGG-G-TT---A-T-TGAT-TTG
gi|10 : TCATAAGTC-AAGG-G-TT---A-T-TGAT-TCGTT-ACCTTAC-----------AC-------T----A--ACcactagttagtgtgaggtaatgaatcaatgatccttgtg
gi|6 : cttcacaagtcaagggttattgattcgttatctcgcactaacTCACAAGTC-AAGGTG-TTTACA-TGTAGCATCGTT-ACCTCGCTGT--------AT------------A--ACCCTTGACATTG-----------AAACGTTGGTATTGAGGCGGAGAACGTCGATAATGGCCAAT----T--AAA----------TTAAATAAACAACAAT----GAA--TCTTG--TTCAGATAGCAAGTTT--------------------------AAA-----ATT-GTC-TACGT-GGTTCCTTTTAGCT-AACATCATGACACGCTTTGGTATACA-A-T----TTT-------------AT------------TTGTAA
gi|3 : ccatcCACAAGTC-AAGG-G-TT---AAT-TGGT-TCGTT-ACCTTAC-----------AC-------T----A--ACCCTTGACA-CATGCACCATTCAAAACATGGGC-Tcgtaccatagatttttaaatcatgataaattacctttttgttctttaatagtgaagtttattattaagattattttacaatcagtctttattaatgtaattgaattttgatgcaacacaacattaattcaatttgttacaacacaatcgacaaacatctcgggacattctgttttcatgcaggttcccgaatttctaaaatactcg
gi|9 : cttgacaagtctagagttattgattcgttacctcgcactaacccttgacatcagtcaccattcaaaacatgagttcaagattggagatgattcaatacgctaaatggaatcagccaatgagatttcttgtttgatattaggtaaaagcacaaatgaaaagtacaaaaacacatgtatcttacgtgggcccttttctcaacatcacgaacaatgtgcgctagttttatttgaaacgtacatgtaattaatatatcacttttaggtccgttaattgctattataacttatcatttcgtacataattaattttaaaataaaaataaatattaacgtgtataatttgttaaaacacaatagacgacttacttgggcaatctgttgttttcatgcggcttgtgttctaaaacttcgtttgatattttttgcaaattaatctatggtgttggccttatggtaactggcaacaaattcgatcccgcgccacgtgtgtttggtttgggccgatcatataatatatggaggctacatgcaggccactgaacaatcactttgACAA-TC-AAGG-G-TG---A-T-TGAT-TTGTTGACATCGC-----------AC-------T----G--ACCTTTGACATCAATAACCGTTCACAATATGTTT-TTGAGACGGAG------GGTGACG--CAACAAGCTA-AAA----------ATAAATCATC--CATT----GAGATCCCTTGAATAAGAT-GCCAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----
gi|11 : ACAAGTC-AAGG-G-TT---A-T-TGAT-TCGTT-ACCTCGCGAGGTTAACGAAT-------C----AATACCCTTGAC
gi|13 : catcttcacaaAAGTT-AAGG-G-TT---A-T-TGAT-TCGTT-ACCTCGCGAGGTAACA--AT-------CAATAA--ACCCTTGAC
gi|1 : AATC-AAGG-G-AT---A-T-TCAT-TCGTT-ACCTCGC-----------AT-------T----A--ACCCTTGACATCAGACACCATTCGATACCTGGGC-TTGAGTTAGAG------AATGATG--CAATATGCTA-AAA----------TTAAATCAGA--CAATTGAAGATATTCATTGTTTCAAAT-TCAAGTTTGGTAA-AAACATTAAATGGAAATTACATA-----ATG-GTCTTATATGAGTTTCCTTT--CATGACATCATGA-ACATTG---CGTGTT-A-TA---TTT-------------ATTTGCAACGAAACTTATAATTCACATTATCttgtgaa
gi|7 : tatatttcgatgttgacaactagtacataatgcttttactattgttaaataatccgagtctgaagtcgtggacaacagttgtatttgtaacatacatgtagttactaatattatgcgaaaacagaaaaaaggaaaattgaaaattctatatcatacatggattaaaactattacaaactagggcagtatttcattaaaaaacaactgagatttacaatttagaatttcataacttttggtataatgaacacattcaaacccaaatgttttaatgtaatgttgcattacataccgactaatttggatgcatttcttttccaataaacaataaaatcttattcattcagcgagtctttttgacctggcaaaaaaaaaccctcaaaaaaccccaaaatacccccccccccttttttttgttttagattagaaatagacttgaaacaacgaaaccgagtaaaacgtatttcaagatgatgcattgataaaaataagtcctcgcaatcataaaggtaagttgctatagccaccagattgttacagattcacgcaaagttatgttgaagaaaaacatagaattttgtggctaaattaatattatacattattttactttgaaaaacatgtctatgaactatttctataccacattgtagctgatacaggtgtacaaagtatgcaagcttgagaaataggaaggcggatgagtcaaattttcagaagcaatacgtgtttcattcacatgtcaacgtttttgacaacatagatagatAGTT-GAGG-G-TT---A-T-TGAT-TCGTT-ACCTTGC-----------AC-------T----A--ACCATTGACATCAGTCGCCATTTGAAATCTGAGC-TTGAGACAAAG------AATGCCG--CAATATGCTACAAAAATGTAAAATTTAAATCAGC--CAAT----GATATTCCTTGTTACAGAT-TAAAGTTTGGTAA-GAACATTAAACGGAGAGTACAGC-----ATG-GCCTTACACGAG---TTCCT--TTGAACATCCTGA-ACATTG---CGTACT-A-C----TTTTATTTGTAATGAAAT------------TTATGATTCATATTTT--GTCCTATAATTGTaca
gi|12 : C-AAGG-A-TC---A-T-TGAT-TCATT-ACCTCAC-----------AC-------T----A--ACcacagcttatgatttagttcatattcaatgttcaaa
gi|3 : ttcacaagtcaagggttattgatttgcactaTT--------TGTT---AAAACACAATAGAC-------GACTTACTTGGGCA--------------ATCTGTTGTTTTC-ATGCGGCTTGTGTTCTAAAACTTCGT----TTG--------------ATAT-TTTTTGCAAATTAATCT-----AT-GGTGTTGGCCTTATGGTAACTGGCAACAAATTC---------------GATCCCGCGCCACGTGTGTTTGGT------TTGGGCCGATCATATAA--TAT------ATGGAGGCTAC--ATGCAGGCCACTGAAC-AATCAC---------TTT-GAGCCCATGTTTTGAATGGTGCATG-TGT-CAAGGGTTA----GTGTAAGGT-AACGAACCAATTAA--CCCTTG--ACTTGTGtg
gi|8 : cttgacaagtctagagttattgattcgttacctcgcactaacccttgacatcagtcaccattcaaaacatgagttcaagattggagatgattcaatacgctaaatggaatcagccaatgagatttcttgtttgatattaggtaaaagcacaaatgaaaagtacaaaaacacatgtatcttacgtgggcccttttctcaacatcacgaacaatgtgcgctagttttatttgaaacgtacatgtaattaatatatcacttttaggtccgttaattgctattataacttatcatttcgtacataattaattttaaaataaaaataaatattaacgtgtataaCATGTTGCCAG-CACCGCACAATGCATGT-TAGTTTCATTTTTGGCAGATTACAAAAGTCATTTTCTGATTGGTTCT-ATGCTGCAGACTACAACTCCAGTCATATTCTCCG-CCTTGAGCCGATGTTTTAAATGGAGACTGATGT-CAATAGTTA----GAGCGAGGT-AACACATCAA-TAA--CA-TATTGACTTGTGAA
gi|3 : aAATCAT---CTCCAATCTTGAACTCATGTTTTGAATGGTGACTGATGT-CAAGGGTTA----GTGCGAGGT-AACGAATCAA-TAA--CTCTAG--ACTTGTCAAgat
gi|5 : cATCCTCCG-TCTCAACCCCACGCTTTGAATGGTAACTGATGT-CAAAG--TA----GTGCGAAGC-AACcaatacgctaaatggaatcagccaatgagatttcttgtttgatattaggtaaaagcacaaatgaaaagtacaaaaacacatgtatcttacgtgggcccttttctcaacatcacgaacaatgtgcgctagttttatttgaaacgtacatgtaattaatatatcacttttaggtccgttaattgctattataacttatcatttcgtacataattaattttaaaataaaaataaatattaacgtgtataatttgttaaaacacaatagacgacttacttgggcaatctgttgttttcatgcggcttgtgttctaaaacttcgtttgatattttttgcaaattaatctatggtgttggccttatggtaactggcaacaaattcgatcccgcgccacgtgtgtttggtttgggccgatcatataatatatggaggctacatgcaggccactgaacaatcactttgagcccatgttttgaatggtgcatgtgtcaagggttagtgtaaggtaacgaaccaattaacccttgacttgtg
gi|7 : atcttcgcaagtcatggATTCTTTG-TCTCAAGCTCAGATTTCAAATGGCGACTGATGT-CAATGGTTA----GTGCAAGGT-AACGAATCAA-TAA--CCCTgacgcaatacgtcctatgagattcctcgttttagatgcaggtttggtaagcgcataaacggaaagtaaaaaacaaatggtctttctccaacatcatgaacattgcatgttgattttatttatttatgatttacaattttcaccatttaattgctgtagcttattatttagttcatggtcaatattgaataccgtgttcaatttgttgaaacataatcgacacccataccagaactatccgccgttttaattctgccagtatcctaaaactttgcataattatttctttaaagaaaataaaatgctgaaaatccatctacgaaatccgccaagtggtatctacacatgtcaccgacgccgtgcct
gi|9 : agttgCTCCG-TCTCAAAAACATATTGTGAACGGTTATTGATGT-CAAAGGTCA----GTGCGATGTCAACAAATCAA-TCA--CCCTgccgcaatatgctacaaaaatgtaaaatttaaatcagccaatgatattccttgttacagattaaagtttggtaagaacattaaacggagagtacagcatggccttacacgagttcctttgaacatcctgaacattgcgtactacttttatttgtaatgaaatttatgattcatattttgtcctataattgtcacagcttatgatttagttcatattcaatgttcaaa
gi|1 : acaatcaAGCCCAGGTATCGAATGGTGTCTGATGT-CAAGGGTTA----ATGCGAGGT-AACGAATGAA-TAT--CCCTggtgacgcaacaagctaaaaataaatcatccattgagatcccttgaataagatgccagtttggtaagagcataaacggaaagtacaaa
gi|12 : tatatttcgatgttgacaactagtacataatgcttttactattgttaaataatccgagtctgaagtcgtggacaacagttgtatttgtaacatacatgtagttactaatattatgcgaaaacagaaaaaaggaaaattgaaaattctatatcatacatggattaaaactattacaaactagggcagtatttcattaaaaaacaactgagatttacaatttagaatttcataacttttggtataatgaacacattcaaacccaaatgttttaatgtaatgttgcattacataccgactaatttggatgcatttcttttccaataaacaataaaatcttattcattcagcgagtctttttgacctggcaaaaaaaaaccctcaaaaaaccccaaaatacccccccccccttttttttgttttagattagaaatagacttgaaacaacgaaaccgagtaaaacgtatttcaagatgatgcattgataaaaataagtcctcgcaatcataaaggtaagttgctatagccaccagattgttacagattcacgcaaagttatgttgaagaaaaacatagaattttgtggctaaattaatattatacattattttactttgaaaaacatgtctatgaactatttctataccacattgtagctgatacaggtgtacaaagtatgcaagcttgagaaataggaaggcggatgagtcaaattttcagaagcaatacgtgtttcattcacatgtcaacgtttttgacaacatagatagataatcaAAGGGTTATTGATTTGCACTAGTTA----GTGTGAGGT-AATGAATCAA-TGAT-CCTTGT--tgagttagagaatgatgcaatatgctaaaattaaatcagacaattgaagatattcattgtttcaaattcaagtttggtaaaaacattaaatggaaattacataatggtcttatatgagtttcctttcatgacatcatgaacattgcgtgttatatttatttgcaacgaaacttataattcacattatcaca
gi|14 : ttcacaagtc-CAAGGGTTATTGAATGCGAGGT-AACGAATCAA-TAA--CCCTTG--ACTTGTGAAg
gi|10 : atcGTTA----GTGCGAGAT-AACGAATCAA-TAA--CCCTTG--ACTTGTGAA
gi|10 : cGTTA----GTGTAAGGT-AACGAATCAA-TAA--CCCTTG--ACTTATGAgttagtgtaaggtaacgaatcaataacccttgacttatga
gi|15 : cttcacaagtcaagggttattgattcgttatctcgcactaacTTA----GTGCAAGGT-AACAAATCTA-TAAT-CCTTG---ACTTGTGAA
gi|16 : TA----GTGCAAGGT-AAAGAATCAA-TAA--CCTTTG--ACTTGTGgatg
gi|17 : A----GTG-AAGGT-AACAAATCTA-TAAT-CCTTGG--ACTTGTGAAcagat
gi|11 : GCGAGGT-AACGAATCAA-TAA--CCCTTG--ACTTGTg
gi|11 : catcttcacaagtcaagggtattgattcgttaacctcGCGAGGTTAACGAATCAA-TAC--CCTTG---ACTTGTGAA
gi|18 : catcGCGAGGT-AACGAATCAG-TAAACCCTTG---ACTTG-GAAgaggtaacgaatcaataacccttgacttgt
gi|13 : GCGAGGT-AAC-AATCAA-TAAACCCTTG---ACTTGTGAAga
gi|13 : aagttaagggttattgattcgttacctcGCGAGGT-AACGAATCAA-TAAC-CCTTA---ACTT
gi|12 : CAAATCAA-TAA--CCCTTG--ACTTGTGAAgaggtaacaatcaataaacccttgacttgtgaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): ATATACTTCGATATTGACAACAGTGATTTTTTAAAGGATAACTTATTATCTGAGTCGTAAGTCGGGAAAAACATACATGGCCAAATAGTTACTACCGGGTAATATTGTGCGAAAACAGGAAAGAGGTGAGGATAACTGAAAAATCTACATCATGCCTAAATACATGTACTGGACTAAAACTACATTACAAGTTAAGGCATTATTGCATAACAAAAATGACTGAGAATCACAATTAAGCATCTCAAAACTTTTGTGTTATTATCAATATTGTATGCAAACCCAAATGACTTAACGTAACAATGTATTACATATCGACTAATTCGGAAGTGCCTCTTTTCTAATAAAATGCGATTCTTTCAACGATTCTTTTTGACCTGGCAAAGAACAAGACATTTTCACACTGAATCACGAAAAAAAAATAAGAACGTTTTTTAAATGATGCTATAAAGAAGATGATGTATAAATAAACATAGATTATTTGTGATTATGAAGATAAGTCACTGTAGCCAGAAAATTGATACAGATTCATGCAAAGTAAGGGTTTCAGAAGAAAACAGTTTTGTGGCTTCATTTTACTTTCGAATATTTGTCTATGAAGCATTCTAATACAACAGTTGCAAATGATACAGGTGTACAAAATATGCAAGCTTGAAAGGTAGGCAGGGGAACCAAATTATCAGATTTACCCATTTTCGGTCCATATAGGAA
Alignments
lowQualScore : 222222222222222 2222222222222222222 1111 11 1 11111 11111 111 777777777777777777777777777777777777777777 2222222 11 111 1111 11 777777777777777777777777777777777777777777777777777777777777777 33 11 1111111 777777777777777777777 1111 55555555555555555555 2222 111 222 11111 1111 11111 1 1
lowQualScore : 2 2 2 555 2 2 4 444444444444444 3 1 4 88 3 0 5 5 5555555555555555555 77 2222 4 0 1 3 00 5 1 44444 99 3 3 1 22222 6 111 6 666 888888888888888888888888888888888888888888 99 6666666 0 00 2 1 1 777 0 3 6 3 1111 0 4 00 111111111111111111111111111111111111111111111111111111111111111 44 88 1 1 11 0 0 0 66 0000000 999 1 1 1 222222222222222222222 1 5555 11111111111111111111 3 1 1 0 0 7 9999 1 1 0 0 1 111 9999 1 22 888 1 3 00000 2222 11111 9 6 7 6 0 0 3 3 3 1
lowQualScore : . . . ... . . . ............... . . . .. . . . . ................... .. .... . . . . .. . . ..... .. . . . ..... . ... . ... .......................................... .. ....... . .. . . . ... . . . . .... . . .. ............................................................... .. .. . . .. . . . .. ....... ... . . . ..................... . .... .................... . . . . . . .... . . . . . ... .... . .. ... . . ..... .... ..... . . . . . . . . . .
lowQualScore : 1 1 1 888 1 1 4 444444444444444 6 4 0 44 7 4 7 3 6666666666666666666 99 1111 3 1 7 0 00 7 4 33333 22 2 3 7 00000 7 777 7 888 222222222222222222222222222222222222222222 22 0000000 8 77 0 0 0 555 8 2 8 0 0000 2 2 22 444444444444444444444444444444444444444444444444444444444444444 33 77 0 0 77 7 7 7 00 7777777 333 0 0 0 333333333333333333333 0 7777 22222222222222222222 2 0 0 7 7 3 3333 0 0 7 7 0 333 0000 0 00 777 0 7 33333 3333 00000 0 0 3 7 7 7 3 3 7 0
consensus : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTG-ACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA-A---AA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--AT-------TCACATTTTCCGTCCTTTAATTGC---TGTAGCTTATNATTTAGTTCATANTCAATATTG-AA--------------TAACGTGTTCAATTTGTTGAAACATA-ATCGAC-ACC--TACC-GGGC-ATCCGTCGTTTT--ATGCGGCTTGTATTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACG--ATC-GCGTAG------TGGTAACTGGC-ACAAATT-----CCATGTCGCCAGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATAT-CTCCGCCTTGAGCCCATGTTTTGAATGGTGACTGATGTCAATGGTTAGTGCGAGGTAACGAATCAA-TAAC-CNTTGACTTGTGAA
Reference ( family-921 ) : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTG-ACATCAGTCACCATTCGAAACGTGGGC-TCGAGACGGAGGATGACG-CAATACGCTA-A---AA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGNTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--AT-------TCACATTTTCCGCCNTNTAATTGC---TGTAGCTTATTATTTAGTTCATGGTCAATGTTG-AA--------------NANCGCGNTCGACTTGTTGAGACNTACNTNGGC-ACCCATACCAGAACTATCCGCCGTTTTCAATNCNGCCNGTGTCCTAAAACTTCGCATAATTGTTTCTTTAAAGAAAATANANTNCTGNAAATCNATCTACGAAATCNGCGNNGGCCTTATGGTANCTGGCAACAAATT-----CCATGTTGCCAGACNCCGCGCNACGCGTGTTTGGTTTCATTTTNGGCNGATCACANAAGTCATTTTCTGATNGGNNCTANTGNTGCAGGCCACNGNNCCAATCATATTCTCCGTCTCGAGCCCATGTTTCGAATGGTGACTGATGTCAAGGGTTAGTGCGAGGTAACGAATCAA-TAAC-CCTNGACTTGTGAA
gi|1 : AATC-AAGG-G-AT---AT-TCAT-TCGTT-ACCTCGC------AT-------TAACCCTTG-ACATCAGACACCATTCGATACCTGGGC-TTGAGTTAGAGAATGATG-CAATATGCTA-A---AA----------TTAAATCAGA--CAATTGAAGATATTCATTGTTTCAAAT-TCAAGTTTGGTAA-AAACATTAAATGGAAATTACATA-----ATG-GTCTTATATGAGTTTCCTTT--CATGACATCATGA-ACATT---GCGTGTT-A-TATTT-------------A----TTTGCAACGAAACTT---------ATA--AT-------TCACATTATC
gi|10 : tatatttcgatgttgacaactagtacataatgcttttactattgttaaataatccgagtctgaagtcgtggacaacagttgtatttgtaacatacatgtagttactaatattatgcgaaaacagaaaaaaggaaaattgaaaattctatatcatacatggattaaaactattacaaactagggcagtatttcattaaaaaacaactgagatttacaatttagaatttcataacttttggtataatgaacacattcaaacccaaatgttttaatgtaatgttgcattacataccgactaatttggatgcatttcttttccaataaacaataaaatcttattcattcagcgagtctttttgacctggcaaaaaaaaaccctcaaaaaaccccaaaatacccccccccccttttttttgttttagattagaaatagacttgaaacaacgaaaccgagtaaaacgtatttcaagatgatgcattgataaaaataagtcctcgcaatcataaaggtaagttgctatagccaccagattgttacagattcacgcaaagttatgttgaagaaaaacatagaattttgtggctaaattaatattatacattattttactttgaaaaacatgtctatgaactatttctataccacattgtagctgatacaggtgtacaaagtatgcaagcttgagaaataggaaggcggatgagtcaaattttcagaagcaatacgtgtttcattcacatgtcaacgtttttgacaacatagatagatCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ATCTCGC------AC-------TAACaca
gi|10 : TCATAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTTAC------AC-------TAACgttagtgtaaggtaacgaatcaataacccttgacttatga
gi|11 : cttcacaagtcaagggttattgattcgttatctcgcactaacTCTTCACAAGTC-AAGG-G--T---AT-TGAT-TCGTTAACCTCGCGAGGTAACGAATCAATAACCCTTG-AC
gi|11 : caACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ttgt
gi|12 : catcttcacaagtcaagggtattgattcgttaacctcTTCACAAGTC-AAGG-G-TT---AT-TGAT-TTG
gi|12 : C-AAGG-A-TC---AT-TGAT-TCATT-ACCTCAC------AC-------TAACTAGTGCAAATCAATAACCCTTcactagttagtgtgaggtaatgaatcaatgatccttgtg
gi|13 : ttcacaagtcTTCACAAGTC-AAGG-GTTT---AT-TGAT-T-GTT-ACCTCGCGAGGTAACGAATCAATAACCCTTA-ACtg
gi|14 : aaTCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ATTCAA---TAACCCTTG-
gi|15 : aTCTTCACAAGTC-AAGG-A-TT---AT-AGAT-TTGTT-ACCTTGC------AC-------TAA
gi|16 : TCTGCACAAGTC-AAAG-G-TT---AT-TGAT-TCTTT-ACCTTGC------AC-------TAtg
gi|17 : CTTCACAAGTCCAAGG-A-TT---AT-AGAT-TTGTT-ACCTT-C------AC-------Tt
gi|18 : TCTTC-CAAGTC-AAGG-G-TTT--AC-TGAT-TCGTT-ACCTCGC------
gi|3 : CTTGACAAGTC-TAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTG-ACATCAGTCACCATTCAAAACATGAGT-TCAAGATTGGAGATGATT-CAATACGCT--A---AA----------TGGAATCAGC--CAAT----GAGATTTCTTGTTT--GAT-----ATTAGGTAA-AAGCA-CAAATGAAAAGTACAAAAACACATGTATCTTACGTGGGC-CCTTTT--CTCAACATCACGA-ACAAT---GTGCGCT-AGT-TTT-------------A----T------------TTGAAACGTACATGTAATTAATATATCAC-TTTTAGGTCCGTTAATTGCTATTATAACTTATCATTTCGTACATAATTAATTTTA-AAATAAAAATAAATATTAACGTGTATAATTTGTTAAAACACA-ATAGACGACT--TACTTGGGCAATCTGTTGTTTTC-ATGCGGCTTGTGTTCTAAAACTTCGT----TTG--------------ATAT-TTTTTGCAAATTAATCTATG------GTGTTGGCCTTATGGTAACTGGCAACAAATT-----C----------GATCCCGCGCCACGTGTGTTTGG------TTTGGGCCGATCATATAA--TAT------ATGGAGGCTAC--ATGCAGGCCACTGAA-CAATCA----CT-----TTGAGCCCATGTTTTGAATGGTGCATG-TGTCAAGGGTTAGTGTAAGGTAACGAACCAATTAAC-CCTTGACTTGTG
gi|4 : TCTTCACAAGTC-AAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------CAACCCTTG-ACATCGGTCACCATTCAAGACATGGGT-TTGAGACAGAGGATGATG-CAATACACTA-A---AA----------TTAAATCAGC--CAAT----GAGATTCCTGGTTTCAGAT-GTAAGTTTGGTAAGGAGCA-TAAACAGAAAGTACAAA-----ATG-GTCTTATGTGGGGTATTTTT--CTCAACATCATGA-ACATT---CCATGCC-A-T-TTT-------------A----T------------TC---------ATA--AT-------TCACATTTTCCATCCTTTAATTGT---TGGTGCT---------GTTT--------TATTGAAA--------------AAACATAATCAAC-------AACATACATTGAC-A--------------ATCCGTGGTTTC--ATGTGGCTTGTATTTTGAAATTTTGTCTAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCT-----ATCGGTGTAG------TGGTAACTAGCCGTAAATTCTACGCCATGTT-TAAGACGCCGCACCATGCATTTGTGGTAAAATTTTTGGCCGATTGTAAAAGCTGTTTTTTGATTGGGTCT-CTGATACAAGCAGCAAAACCAATCATATGCTCCGTTTAGAGCCCATGTTTTGAATGGTGACTGATGTCAATGGTTAGTGTGAGGTAACAAATCAA-TAAC-CTTATACTTGTGAA
gi|5 : TCTTCGCAAGTC-ATGG-G-TT---G--------------CTTCGC------AC-------TA--CTTTG-ACATCAGTTACCATTCAAAGCGTGGGG-TTGAGACGGAGGATGACG-CAATACGT----------------------------C--CTAT----GAGATTCCTCGTTTTAGAT-GCAGGTTTGGTAA-GCGCA-TAAACGGAAAGTAAAAA-----AC-------AAATGG--TCTTTCT--C-CAACATCATGA-ACATT---GCATGTTGA-T-TTT-------------ATTTAT------------TT---------ATG--AT-------TTACAATTTTCACCATTTAATTGC---TGTAGCTTATTATTTAGTTCATGGTCAATATTG-AA--------------TACCGTGTTCAATTTGTTGAAACATA-ATCGAC-ACCCATACCAGAACTATCCGCCGTTTT-AATTCTGCCAGTATCCTAAAACTTTGCATAATTATTTCTTTAAAGAAAATAAAATGCTGAAAATCCATCTACGAAATCCGCCAAG------TGGTATCT----ACA----------CATGTCACC-GACGCCGTGC
gi|6 : aTCACAAGTC-AAGGTG-TTTACATGTAGCATCGTT-ACCTCGCTGT---A--------TAACCCTTG-ACATT-----------GAAACGTTGGTATTGAGGCGGAGAACGTCGATAATG-GCCA-ATTAAA----------TTAAATAAACAACAAT----GA-AT--CTTG-TTCAGATAGCAAGTTT--------------------------AAA-----ATT-GTC-TACGT-GGTTCCTTTTAGCT-AACATCATGACACGCTTTGGTATACA-A-T-TTT-------------A----T------------TT---------GTA--Act
gi|7 : ccatcAGTT-GAGG-G-TT---AT-TGAT-TCGTT-ACCTTGC------AC-------TAACCATTG-ACATCAGTCGCCATTTGAAATCTGAGC-TTGAGACAAAGAATGCCG-CAATATGCTACA---AAAATGTAAAATTTAAATCAGC--CAAT----GATATTCCTTGTTACAGAT-TAAAGTTTGGTAA-GAACATTAAACGGAGAGTACAGC-----ATG-GCCTTACACGAGTTCCTT-----TGAACATCCTGA-ACATT---GCGTACT-A-C-TTTTATTTGTAATGAAA----T------------TT---------ATG--AT-------TCATATTTT--GTCCTATAATTGT---CACAGCTTATGATTTAGTTCATATTCAATGTTC-AA--------------cgtaccatagatttttaaatcatgataaattacctttttgttctttaatagtgaagtttattattaagattattttacaatcagtctttattaatgtaattgaattttgatgcaacacaacattaattcaatttgttacaacacaatcgacaaacatctcgggacattctgttttcatgcaggttcccgaatttctaaaatactcg
gi|8 : CATGTTGCCAG-CACCGCACAATGCATGTT-AGTTTCATTTTTGGCAGATTACAAAAGTCATTTTCTGATTGGTTCTA-TGCTGCAGACTACAACTCCAGTCATATTCTCCGCCTTGAGCCGATGTTTTAAATGGAGACTGATGTCAATAGTTAGAGCGAGGTAACACATCAA-TAACATATTGACTTGTGAAa
gi|9 : aACAA-TC-AAGG-G-TG---AT-TGAT-TTGTTGACATCGC------AC-------TGACCTTTG-ACATCAATAACCGTTCACAATATGTTT-TTGAGACGGAGGGTGACG-CAACAAGCTA-A---AA----------ATAAATCATC--CATT----GAGATCCCTTGAATAAGAT-GCCAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----gat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATATACTTCGATATTGACAACAGTGATTTTTTAAAGGATAACTTATTATCTGAGTCGTAAGTCGGGAAAAACATACATGGCCAAATAGTTACTACCGGGTAATATTGTGCGAAAACAGGAAAGAGGTGAGGATAACTGAAAAATCTACATCATGCCTAAATACATGTACTGGACTAAAACTACATTACAAGTTAAGGCATTATTGCATAACAAAAATGACTGAGAATCACAATTAAGCATCTCAAAACTTTTGTGTTATTATCAATATTGTATGCAAACCCAAATGACTTAACGTAACAATGTATTACATATCGACTAATTCGGAAGTGCCTCTTTTCTAATAAAATGCGATTCTTTCAACGATTCTTTTTGACCTGGCAAAGAACAAGACATTTTCACACTGAATCACGAAAAAAAAATAAGAACGTTTTTTAAATGATGCTATAAAGAAGATGATGTATAAATAAACATAGATTATTTGTGATTATGAAGATAAGTCACTGTAGCCAGAAAATTGATACAGATTCATGCAAAGTAAGGGTTTCAGAAGAAAACAGTTTTGTGGCTTCATTTTACTTTCGAATATTTGTCTATGAAGCATTCTAATACAACAGTTGCAAATGATACAGGTGTACAAAATATGCAAGCTTGAAAGGTAGGCAGGGGAACCAAATTATCAGATTTACCCATTTTCGGTCCATATAGGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222 2222222222222222222 1111 11 1 11111 11 11111 3333333333333 2222222 111 2222222 99999999999999999999999999999999999999999999999999999999 11 2222 22222 111111111111111111111111111111111111111111111111 11 1 777777777777777777777 1 2 111 1 33 111 1 666666 777777777777777777777777777777 4444 11 222 3333 1 1 1
lowQualScore : 2 2 2 666 2 2 4 777777777777777 0 4 5 0 5 5 5555555555555555555 77 2222 4 0 44 00 5 1 44444 99 3 33 1 22222 6666666666666 1111111 111 6 3333333 33333333333333333333333333333333333333333333333333333333 3 77 0000 4 0 3 00000 0 0 3 222222222222222222222222222222222222222222222222 33 3 77 0 0 999999999999999999999 2 0 0 777 0 0 44 000 3 7 0 3 999999 6 333333333333333333333333333333 3 0 0 0 9999 00 9999 111 1 6 2222 0 0 3 0 2 0 0 1
lowQualScore : . . . ... . . . ............... . . . . . . ................... .. .... . . .. .. . . ..... .. . .. . ..... ............. ....... ... . ....... ........................................................ . .. .... . . . ..... . . . ................................................ .. . .. . . ..................... . . . ... . . .. ... . . . . ...... . .............................. . . . . .... .. .... ... . . .... . . . . . . . .
lowQualScore : 2 2 2 111 2 2 7 111111111111111 1 0 7 4 7 3 6666666666666666666 99 1111 3 1 77 00 7 4 33333 22 2 88 7 00000 7777777777777 7777777 777 7 5555555 55555555555555555555555555555555555555555555555555555555 2 88 4444 0 8 8 00000 6 8 8 999999999999999999999999999999999999999999999999 88 2 22 0 2 888888888888888888888 8 0 2 555 0 7 00 000 7 3 7 3 777777 7 333333333333333333333333333333 2 2 7 7 0000 33 0000 333 0 7 0000 7 2 2 0 0 0 0 0
consensus : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA-A---AA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-------------ACA-------TTG---CGTGCT-A-T-----TTT-------------A----T------------TT---------ATG--AT-------TCACATTTTCCGTCCTTTAATTGC---TGNAGCTTATTATT-----TAGTTCATAATCAAT-------------ATTG-AA--------------T-------------AACGT--GTTCAATTTGTTAAAACACA-ATCGACG-ACN--TAC-CGGGA-C-A-TCCGTCGTTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTA-CGG-GTC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATAT-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
Reference ( family-921 ) : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA-A---AA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-------------ACA-------TTG---CGTGCT-A-T-----TTT-------------A----T------------TT---------ATG--AT-------TCACATTTTCCGTCCTTTAATTGC---TGTAGCTTATNATT-----TAGTTCATANTCAAT-------------ATTG-AA--------------T-------------AACGT--GTTCAATTTGTTGAAACATA-ATCGAC--ACC--TAC-CGGG--C-A-TCCGTCGTTTT-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTA-CGA---TCGCGTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATAT-CTCCGCCTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGCGAGGTAACGAATCAA-TAAC-CNTTGACTTGTGAA
gi|1 : AATC-AAGG-G-AT---AT-TCAT-TCGTT-ACCTCGC------AT-------TAACCCTTGACATCAGACACCATTCGATACCTGGGC-TTGAGTTAGAGAATGATG-CAATATGCTA-A---AA----------TTAAATCAGA--CAATTGAAGATATTCATTGTTTCAAAT-TCAAGTTTGGTAA-AAACATTAAATGGAAATTACATA-----ATG-GTCTTATATGAGTTTCCTTT--CATGACATCATGA-------------ACA-------TTG---CGTGTT-A-TA----TTT-------------A----TTTGCAACGAAACTT---------ATA--AT-------TCACATTATC
gi|10 : tatatttcgatgttgacaactagtacataatgcttttactattgttaaataatccgagtctgaagtcgtggacaacagttgtatttgtaacatacatgtagttactaatattatgcgaaaacagaaaaaaggaaaattgaaaattctatatcatacatggattaaaactattacaaactagggcagtatttcattaaaaaacaactgagatttacaatttagaatttcataacttttggtataatgaacacattcaaacccaaatgttttaatgtaatgttgcattacataccgactaatttggatgcatttcttttccaataaacaataaaatcttattcattcagcgagtctttttgacctggcaaaaaaaaaccctcaaaaaaccccaaaatacccccccccccttttttttgttttagattagaaatagacttgaaacaacgaaaccgagtaaaacgtatttcaagatgatgcattgataaaaataagtcctcgcaatcataaaggtaagttgctatagccaccagattgttacagattcacgcaaagttatgttgaagaaaaacatagaattttgtggctaaattaatattatacattattttactttgaaaaacatgtctatgaactatttctataccacattgtagctgatacaggtgtacaaagtatgcaagcttgagaaataggaaggcggatgagtcaaattttcagaagcaatacgtgtttcattcacatgtcaacgtttttgacaacatagatagatCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ATCTCGC------AC-------TAACaca
gi|10 : TCATAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTTAC------AC-------TAACgttagtgtaaggtaacgaatcaataacccttgacttatga
gi|11 : cttcacaagtcaagggttattgattcgttatctcgcactaacTCTTCACAAGTC-AAGG-G--T---AT-TGAT-TCGTTAACCTCGCGAGGTAACGAATCAATAACCCTTGAC
gi|11 : caACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ttgt
gi|12 : catcttcacaagtcaagggtattgattcgttaacctcTTCACAAGTC-AAGG-G-TT---AT-TGAT-TTG
gi|12 : AAGGGTTATTGATTTGCACTAGTTAGTGTGAGGTAATGAATCAA-TGAT-CCTTGcactagttagtgtgaggtaatgaatcaatgatccttgtg
gi|13 : ttcacaagtcTTCACAAGTC-AAGG-GTTT---AT-TGAT-T-GTT-ACCTCGCGAGGTAACGAATCAATAACCCTTAACtg
gi|14 : aaTCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ATTCAA---TAACCCTTG
gi|15 : aTCTTCACAAGTC-AAGG-A-TT---AT-AGAT-TTGTT-ACCTTGC------AC-------TAA
gi|16 : TCTGCACAAGTC-AAAG-G-TT---AT-TGAT-TCTTT-ACCTTGC------AC-------TAtg
gi|17 : CTTCACAAGTCCAAGG-A-TT---AT-AGAT-TTGTT-ACCTT-C------AC-------Tt
gi|18 : TCTTC-CAAGTC-AAGG-G-TTT--AC-TGAT-TCGTT-ACCTCGC------
gi|3 : CTTGACAAGTC-TAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCAAAACATGAGT-TCAAGATTGGAGATGATT-CAATACGCT--A---AA----------TGGAATCAGC--CAAT----GAGATTTCTTGTTT--GAT-----ATTAGGTAA-AAGCA-CAAATGAAAAGTACAAAAACACATGTATCTTACGTGGG-CCCTTTT--CTCAACATCACGA-------------ACA-------ATG---TGCGCT-AGT-----TTT-------------A----T------------TTGAAACGTACATGTAATTAATATATCAC-TTTTAGGTCCGTTAATTGCTATTATAACTTATCATT-----TCGTACATAATTAAT-------------TTTA-AAATAAAAATAAATATT-------------AACGT--GTATAATTTGTTAAAACACA-ATAGACG-ACT--TACTTGGG--CAA-TCTGTTGTTTTCATGCGGCTT---GTG-TTCTAAAACTTCGT----TTG--------------ATAT-TTTTTGCAAATTAATCTA-TGGTGTTGGCCTTATGGTAACTGG-CAACAAATTC-----------------GATCCCGCGCCACGTGTGTTTGG------TTTGGGCCGATCATATAA--TAT------ATGGAGGCTAC--ATGCAGGCCACTGAA-CAATCA---------CTTTGAGCCCATGTTTTGAATGGTGCATG-TGT-CAAGGGTTAGTGTAAGGTAACGAACCAATTAAC-CCTTGACTTGTG
gi|4 : TCTTCACAAGTC-AAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------CAACCCTTGACATCGGTCACCATTCAAGACATGGGT-TTGAGACAGAGGATGATG-CAATACACTA-A---AA----------TTAAATCAGC--CAAT----GAGATTCCTGGTTTCAGAT-GTAAGTTTGGTAAGGAGCA-TAAACAGAAAGTACAAA-----ATG-GTCTTATGTGGGGTATTTTT--CTCAACATCATGA-------------ACA-------TTC---CATGCC-A-T-----TTT-------------A----T------------TC---------ATA--AT-------TCACATTTTCCATCCTTTAATTGT---TGGTGCT--------------GTTT--------T-------------ATTGAAA--------------A-------------AACAT--AATCAAC-------AACATACATTGAC--A----------------A-TCCGTGGTTTC-ATGTGGCTT---GTA-TTTTGAAATTTTGTCTAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTATCG------GTGTAGTGGTAACTAGCC-GTAAATTCTA---CGCCATGTTTAAGACGCCGCACCATGCATTTGTGGTAAAATTTTTGGCCGATTGTAAAAGCTGTTTTTTGATTGGGTCT-CTGATACAAGCAGCAAAACCAATCATATGCTCCGTTTAGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACAAATCAA-TAAC-CTTATACTTGTGAA
gi|5 : TCTTCGCAAGTC-ATGG-G-TT---G--------------CTTCGC------AC-------TA--CTTTGACATCAGTTACCATTCAAAGCGTGGGG-TTGAGACGGAGGATGACG-CAATACGT----------------------------C--CTAT----GAGATTCCTCGTTTTAGAT-GCAGGTTTGGTAA-GCGCA-TAAACGGAAAGTAAAAA-----AC-------AAATGG--TCTTTCT--C-CAACATCATGA-------------ACA-------TTG---CATGTTGA-T-----TTT-------------ATTTAT------------TT---------ATG--AT-------TTACAATTTTCACCATTTAATTGC---TGTAGCTTATTATT-----TAGTTCATGGTCAAT-------------ATTG-AA--------------T-------------ACCGT--GTTCAATTTGTTGAAACATA-ATCGAC--ACCCATAC-CAGAACT-A-TCCGCCGTTTTAATTCTGCCA---GTA-TCCTAAAACTTTGCATAATTATTTCTTTAAAGAAAATAAAATGCTGAAAATCCATCTA-CGAAATCCGCCAAGTGGTATCT-----ACA-----CATGTCACC--------GACGCCGTGCC
gi|6 : aTCACAAGTC-AAGGTG-TTTACATGTAGCATCGTT-ACCTCGCTGT---A--------TAACCCTTGACATT-----------GAAACGTTGGTATTGAGGCGGAGAACGTCGATAATG-GCCA-ATTAAA----------TTAAATAAACAACAAT----GA-AT--CTTGTT-CAGATAGCAAGTTT--------------------------AAA-----ATT-GTCT-ACGTGG-TTCCTTTTAGCT-AACATCATGACACGCTTTGGTATACAATTTTATTTGTAACGTACC-A-TAGATTTTT-------------A----AA-----------TC---------ATG--ATAAA----TTACCTTTTT-GTTCTTTAATAG----TGAAGTTTATTATTAAGATTATTTTACAATCAGTCTTTATTAATGTAATTG-AA--------------TTTTGATGCAACACAACATTAATTCAATTTGTTACAACACA-ATCGACAAACA--TCT-CGGGA-C-ATTCTGT--TTTC-ATGCAGGTTCCCGAATTTCTAAAAt
gi|7 : ccatcAGTT-GAGG-G-TT---AT-TGAT-TCGTT-ACCTTGC------AC-------TAACCATTGACATCAGTCGCCATTTGAAATCTGAGC-TTGAGACAAAGAATGCCG-CAATATGCTACA---AAAATGTAAAATTTAAATCAGC--CAAT----GATATTCCTTGTTACAGAT-TAAAGTTTGGTAA-GAACATTAAACGGAGAGTACAGC-----ATG-GCCTTACACGAGTTCCTT-----TGAACATCCTGA-------------ACA-------TTG---CGTACT-A-C-----TTTTATTTGTAATGAAA----T------------TT---------ATG--AT-------TCATATTTT--GTCCTATAATTGT---CACAGCTTATGATT-----TAGTTCATATTCAAT-------------GTTC-AA--------------tactcg
gi|8 : CATGTTGCC-------AG-CACCGCACAATGCATGTTAGTTTC-ATTTTTGGCAGATTACAAAAGTCATTTTCTGATTGGTTCTA-TGCTGCAGACTACAACTCCAGTCATATTCTCCGCCTTGAGCCGATGTTTTAAATGGAGACTGATGT-CAATAGTTAGAGCGAGGTAACACATCAA-TAACATATTGACTTGTGAAa
gi|9 : aACAA-TC-AAGG-G-TG---AT-TGAT-TTGTTGACATCGC------AC-------TGACCTTTGACATCAATAACCGTTCACAATATGTTT-TTGAGACGGAGGGTGACG-CAACAAGCTA-A---AA----------ATAAATCATC--CATT----GAGATCCCTTGAATAAGAT-GCCAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----gat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATATACTTCGATATTGACAACAGTGATTTTTTAAAGGATAACTTATTATCTGAGTCGTAAGTCGGGAAAAACATACATGGCCAAATAGTTACTACCGGGTAATATTGTGCGAAAACAGGAAAGAGGTGAGGATAACTGAAAAATCTACATCATGCCTAAATACATGTACTGGACTAAAACTACATTACAAGTTAAGGCATTATTGCATAACAAAAATGACTGAGAATCACAATTAAGCATCTCAAAACTTTTGTGTTATTATCAATATTGTATGCAAACCCAAATGACTTAACGTAACAATGTATTACATATCGACTAATTCGGAAGTGCCTCTTTTCTAATAAAATGCGATTCTTTCAACGATTCTTTTTGACCTGGCAAAGAACAAGACATTTTCACACTGAATCACGAAAAAAAAATAAGAACGTTTTTTAAATGATGCTATAAAGAAGATGATGTATAAATAAACATAGATTATTTGTGATTATGAAGATAAGTCACTGTAGCCAGAAAATTGATACAGATTCATGCAAAGTAAGGGTTTCAGAAGAAAACAGTTTTGTGGCTTCATTTTACTTTCGAATATTTGTCTATGAAGCATTCTAATACAACAGTTGCAAATGATACAGGTGTACAAAATATGCAAGCTTGAAAGGTAGGCAGGGGAACCAAATTATCAGATTTACCCATTTTCGGTCCATATAGGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333 222222222222222222 1111 11 1 11111 11111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 2222 22222 11 44444444444444 1 1 222222222222222222222222222222222222222222222222222 111 1 111 1 33 111 4444444 777777777777777777777777777777 4444 11 222 33333 1
lowQualScore : 2 2 2 666 2 2 5 000000000000000 0 4 5 0 5 5 555555555555555555 77 2222 4 0 1 3 00 5 1 44444 99 3 7 1 22222 6 111 6 666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 0000 1 0 3 00000 0 0 4 4 11 77777777777777 0 0 0 3 8888 000000000000000000000000000000000000000000000000000 999 0 0 777 0 0 44 000 3 7 0 0 8888888 6 333333333333333333333333333333 3 0 0 0 9999 00 9999 111 1 6 22222 0 3 0 8 8
lowQualScore : . . . ... . . . ............... . . . . . . .................. .. .... . . . . .. . . ..... .. . . . ..... . ... . ... ......................................................................................... .. .... . . . ..... . . . . .. .............. . . . . .... ................................................... ... . . ... . . .. ... . . . . ....... . .............................. . . . . .... .. .... ... . . ..... . . . . .
lowQualScore : 4 4 4 555 4 4 0 333333333333333 1 0 7 4 7 3 666666666666666666 99 1111 3 1 7 0 00 7 4 33333 22 2 2 7 00000 7 777 7 888 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 4444 0 8 6 00000 6 8 0 0 22 00000000000000 0 2 0 2 0000 555555555555555555555555555555555555555555555555555 000 0 2 555 0 7 00 000 7 3 7 7 3333333 7 333333333333333333333333333333 2 2 7 7 0000 33 0000 333 0 7 00000 2 2 0 0 0
consensus : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTGC---TGNAGCTTATTAT-----TTAGTTCATAATCAATNTTN-AA--------------TAACGT-GTTCAA-TTTGTTGAAACACA-A--------------------------TCGAC-A-ACATACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
Reference ( family-921 ) : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTGC---TGNAGCTTATTAT-----TTAGTTCATAATCAATATTG-AA--------------TAACGT-GTTCAA-TTTGTTAAAACACA-A--------------------------TCGAC-G-ACNTACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
gi|1 : AATC-AAGG-G-AT---AT-TCAT-TCGTT-ACCTCGC------AT-------TAACCCTTGACATCAGACACCATTCGATACCTGGGC-TTGAGTTAGAGAATGATG-CAATATGCTA---AAA----------TTAAATCAGA--CAATTGAAGATATTCATTGTTTCAAAT-TCAAGTTTGGTAA-AAACATTAAATGGAAATTACATA-----ATG-GTCTTATATGAGTTTCCTTT--CATGACATCATGA-ACATT---GCGTGTT-A-TATTT-------------A----TTTGCAACGAAACTT---------ATA--A-------------T-------TCA---CAT-----------TATC
gi|10 : tatatttcgatgttgacaactagtacataatgcttttactattgttaaataatccgagtctgaagtcgtggacaacagttgtatttgtaacatacatgtagttactaatattatgcgaaaacagaaaaaaggaaaattgaaaattctatatcatacatggattaaaactattacaaactagggcagtatttcattaaaaaacaactgagatttacaatttagaatttcataacttttggtataatgaacacattcaaacccaaatgttttaatgtaatgttgcattacataccgactaatttggatgcatttcttttccaataaacaataaaatcttattcattcagcgagtctttttgacctggcaaaaaaaaaccctcaaaaaaccccaaaatacccccccccccttttttttgttttagattagaaatagacttgaaacaacgaaaccgagtaaaacgtatttcaagatgatgcattgataaaaataagtcctcgcaatcataaaggtaagttgctatagccaccagattgttacagattcacgcaaagttatgttgaagaaaaacatagaattttgtggctaaattaatattatacattattttactttgaaaaacatgtctatgaactatttctataccacattgtagctgatacaggtgtacaaagtatgcaagcttgagaaataggaaggcggatgagtcaaattttcagaagcaatacgtgtttcattcacatgtcaacgtttttgacaacatagatagatCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ATCTCGC------AC-------TAACaca
gi|10 : GTTAGTGTAAGGTAACGAATCAA-TAAC-CCTTGACTTATGAgttagtgtaaggtaacgaatcaataacccttgacttatga
gi|11 : cttcacaagtcaagggttattgattcgttatctcgcactaacTCTTCACAAGTC-AAGG-G--T---AT-TGAT-TCGTTAACCTCGCGAGGTAACGAATCAATAACCCTTGAC
gi|11 : caACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ttgt
gi|12 : catcttcacaagtcaagggtattgattcgttaacctcTTCACAAGTC-AAGG-G-TT---AT-TGAT-TTG
gi|12 : AAGGGTTATTGATTTGCACTAGTTAGTGTGAGGTAATGAATCAA-TGAT-CCTTGcactagttagtgtgaggtaatgaatcaatgatccttgtg
gi|13 : ttcacaagtcTTCACAAGTC-AAGG-GTTT---AT-TGAT-T-GTT-ACCTCGCGAGGTAACGAATCAATAACCCTTAACtg
gi|14 : aaTCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ATTCAA---TAACCCTTG
gi|15 : aTCTTCACAAGTC-AAGG-A-TT---AT-AGAT-TTGTT-ACCTTGC------AC-------TAA
gi|16 : TCTGCACAAGTC-AAAG-G-TT---AT-TGAT-TCTTT-ACCTTGC------AC-------TAtg
gi|17 : CTTCACAAGTCCAAGG-A-TT---AT-AGAT-TTGTT-ACCTT-C------AC-------Tt
gi|18 : TCTTC-CAAGTC-AAGG-G-TTT--AC-TGAT-TCGTT-ACCTCGC------
gi|3 : CTTGACAAGTC-TAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCAAAACATGAGT-TCAAGATTGGAGATGATT-CAATACGCT----AAA----------TGGAATCAGC--CAAT----GAGATTTCTTGTTT--GAT-----ATTAGGTAA-AAGCA-CAAATGAAAAGTACAAAAACACATGTATCTTACGTGGG-CCCTTTT--CTCAACATCACGA-ACAAT---GTGCGCT-AGT-TTT-------------A----T------------TTGAAACGTACATGTAA-------------TTAATATATCA---C-T-----------TTTAGGTCCGTTAATTGCTATTATAACTTATCAT-----TTCGTACATAATTAATTTTA-AAATAAAAATAAATATTAACGT-GTATAA-TTTGTTAAAACACA-A--------------------------TAGAC-G-ACTTACTTGGGCAA-TCTGTTGTTTTC-ATGCGGCTT---GTG-TTCTAAAACTTCGT----TTG--------------ATAT-TTTTTGCAAATTAATCTATGGTG--TTGGCCTTATGGTAACTGG-CAACAAATTC-----------------GATCCCGCGCCACGTGTGTTTGG------TTTGGGCCGATCATATAA--TAT------ATGGAGGCTAC--ATGCAGGCCACTGAA-CAATCA----------CTTTGAGCCCATGTTTTGAATGGTGCATG-TGT-CAAGGGTTAGTGTAAGGTAACGAACCAATTAAC-CCTTGACTTGTG
gi|4 : TCTTCACAAGTC-AAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------CAACCCTTGACATCGGTCACCATTCAAGACATGGGT-TTGAGACAGAGGATGATG-CAATACACTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTGGTTTCAGAT-GTAAGTTTGGTAAGGAGCA-TAAACAGAAAGTACAAA-----ATG-GTCTTATGTGGGGTATTTTT--CTCAACATCATGA-ACATT---CCATGCC-A-T-TTT-------------A----T------------TC---------ATA--A-------------T-------TCA---CAT-----------TTTCCATCCTTTAATTGT---TGGTGCT--------------GTTT--------TATTGAAA--------------AAACAT-AATCAA-C-------AACATACA--------------------------TTGAC-A--------------A-TCCGTGG-TTTC-ATGTGGCTT---GTA-TTTTGAAATTTTGTCTAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTATCG-G--T--G--TAGTGGTAACTAGCC-GTAAATTCTA---CGCCATGTTTAAGACGCCGCACCATGCATTTGTGGTAAAATTTTTGGCCGATTGTAAAAGCTGTTTTTTGATTGGGTCT-CTGATACAAGCAGCAAAACCAATCATA-TGCTCCGTTTAGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACAAATCAA-TAAC-CTTATACTTGTGAA
gi|5 : TCTTCGCAAGTC-ATGG-G-TT---G--------------CTTCGC------AC-------TA--CTTTGACATCAGTTACCATTCAAAGCGTGGGG-TTGAGACGGAGGATGACG-CAATACGT---------------------------C--CTAT----GAGATTCCTCGTTTTAGAT-GCAGGTTTGGTAA-GCGCA-TAAACGGAAAGTAAAAA-----AC-------AAATGG--TCTTTCT--C-CAACATCATGA-ACATT---GCATGTTGA-T-TTT-------------ATTTAT------------TT---------ATG--A-------------T-------TTA---CAA-----------TTTTCACCATTTAATTGC---TGTAGCTTATTAT-----TTAGTTCATGGTCAATATTG-AA--------------TACCGT-GTTCAA-TTTGTTGAAACATA-A--------------------------TCGAC-ACCCATACCAGAACTA-TCCGCCG-TTTTAATTCTGCCA---GTA-TCCTAAAACTTTGCATAATTATTTCTTTAAAGAAAATAAAATGCTGAAAATCCATCTACGA-AATCC-GCCAAGTGGTATCT-----ACA-----CATGTCACC--------GACGCCGTGCC
gi|6 : aTCACAAGTC-AAGGTG-TTTACATGTAGCATCGTT-ACCTCGCTGT---A--------TAACCCTTGACATT-----------GAAACGTTGGTATTGAGGCGGAGAACGTCGATAATG-GCCAATTAAA----------TTAAATAAACAACAAT----GA-AT--CTTG-TTCAGATAGCAAGTTT--------------------------AAA-----ATT-GTC-TACGT-GGTTCCTTTTAGCT-AACATCATGACACGCTTTGGTATACA-A-T-TTT-------------A----T------------TT---------GTA--ACGTACCATAGATTT-------TTAAATCATGATAAATTACCTTTTTGTTCTTTAATAG----TGAAGTTTATTATTAAGATTATTTTACAATCAGTCTTT-AT--------------TAATGTAATTGAATTTTGATGCAACACA-ACATTAATTCAATTTGTTACAACACAATCGACAA-ACATCTCGGGAC-ATTCTGT---TTTC-ATGCAGGTTCCCGAATTTCTAAAAt
gi|7 : ccatcAGTT-GAGG-G-TT---AT-TGAT-TCGTT-ACCTTGC------AC-------TAACCATTGACATCAGTCGCCATTTGAAATCTGAGC-TTGAGACAAAGAATGCCG-CAATATGCTAC--AAAAATGTAAAATTTAAATCAGC--CAAT----GATATTCCTTGTTACAGAT-TAAAGTTTGGTAA-GAACATTAAACGGAGAGTACAGC-----ATG-GCCTTACACGAGTTCCTT-----TGAACATCCTGA-ACATT---GCGTACT-A-C-TTTTATTTGTAATGAAA----T------------TT---------ATG--A-------------T-------TCA---TAT-----------TTT--GTCCTATAATTGT---CACAGCTTATGAT-----TTAGTTCATATTCAATGTTC-AA--------------tactcg
gi|8 : CATGTTGCC-------AG-CACCGCACAATGCATGTTAGTTTC-ATTTTTGGCAGATTACAAAAGTCATTTTCTGATTGGTTCTA-TGCTGCAGACTACAACTCCAGTCATATT-CTCCGCCTTGAGCCGATGTTTTAAATGGAGACTGATGT-CAATAGTTAGAGCGAGGTAACACATCAA-TAACATATTGACTTGTGAAa
gi|9 : aACAA-TC-AAGG-G-TG---AT-TGAT-TTGTTGACATCGC------AC-------TGACCTTTGACATCAATAACCGTTCACAATATGTTT-TTGAGACGGAGGGTGACG-CAACAAGCTA---AAA----------ATAAATCATC--CATT----GAGATCCCTTGAATAAGAT-GCCAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----gat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATATACTTCGATATTGACAACAGTGATTTTTTAAAGGATAACTTATTATCTGAGTCGTAAGTCGGGAAAAACATACATGGCCAAATAGTTACTACCGGGTAATATTGTGCGAAAACAGGAAAGAGGTGAGGATAACTGAAAAATCTACATCATGCCTAAATACATGTACTGGACTAAAACTACATTACAAGTTAAGGCATTATTGCATAACAAAAATGACTGAGAATCACAATTAAGCATCTCAAAACTTTTGTGTTATTATCAATATTGTATGCAAACCCAAATGACTTAACGTAACAATGTATTACATATCGACTAATTCGGAAGTGCCTCTTTTCTAATAAAATGCGATTCTTTCAACGATTCTTTTTGACCTGGCAAAGAACAAGACATTTTCACACTGAATCACGAAAAAAAAATAAGAACGTTTTTTAAATGATGCTATAAAGAAGATGATGTATAAATAAACATAGATTATTTGTGATTATGAAGATAAGTCACTGTAGCCAGAAAATTGATACAGATTCATGCAAAGTAAGGGTTTCAGAAGAAAACAGTTTTGTGGCTTCATTTTACTTTCGAATATTTGTCTATGAAGCATTCTAATACAACAGTTGCAAATGATACAGGTGTACAAAATATGCAAGCTTGAAAGGTAGGCAGGGGAACCAAATTATCAGATTTACCCATTTTCGGTCCATATAGGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333 222222222222222222 1111 11 1 11111 11111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 2222 22222 44444444444444 1 1 111111111111111111111111111111111111111111111111111 111 1 111 1 33 111 4444444 777777777777777777777777777777 4444 11 222 33333 1
lowQualScore : 2 2 2 666 2 2 5 000000000000000 0 4 5 0 5 5 555555555555555555 77 2222 4 0 1 3 00 5 1 44444 99 3 7 1 22222 6 111 6 666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 0000 1 8 00000 5 1 4 3 3 77777777777777 0 0 0 3 3333 222222222222222222222222222222222222222222222222222 999 0 0 777 0 0 44 000 3 7 0 0 8888888 6 333333333333333333333333333333 3 0 0 0 9999 00 9999 111 1 6 22222 0 3 0 8 8
lowQualScore : . . . ... . . . ............... . . . . . . .................. .. .... . . . . .. . . ..... .. . . . ..... . ... . ... ......................................................................................... .. .... . . ..... . . . . . .............. . . . . .... ................................................... ... . . ... . . .. ... . . . . ....... . .............................. . . . . .... .. .... ... . . ..... . . . . .
lowQualScore : 4 4 4 555 4 4 0 333333333333333 1 0 7 4 7 3 666666666666666666 99 1111 3 1 7 0 00 7 4 33333 22 2 2 7 00000 7 777 7 888 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 4444 0 0 00000 0 0 0 8 8 00000000000000 0 2 0 2 8888 222222222222222222222222222222222222222222222222222 000 0 2 555 0 7 00 000 7 3 7 7 3333333 7 333333333333333333333333333333 2 2 7 7 0000 33 0000 333 0 7 00000 2 2 0 0 0
consensus : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTGC---TGNAGCT-TATTAT-----TTAGTTCATAATCAATNTTNAA--------------TAACGT-GTTCAA-TTTGTTGAAACACA-A--------------------------TCGAC-A-ACATACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
Reference ( family-921 ) : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTGC---TGNAGCT-TATTAT-----TTAGTTCATAATCAATNTTNAA--------------TAACGT-GTTCAA-TTTGTTGAAACACA-A--------------------------TCGAC-A-ACATACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
gi|1 : AATC-AAGG-G-AT---AT-TCAT-TCGTT-ACCTCGC------AT-------TAACCCTTGACATCAGACACCATTCGATACCTGGGC-TTGAGTTAGAGAATGATG-CAATATGCTA---AAA----------TTAAATCAGA--CAATTGAAGATATTCATTGTTTCAAAT-TCAAGTTTGGTAA-AAACATTAAATGGAAATTACATA-----ATG-GTCTTATATGAGTTTCCTTT--CATGACATCATGA-ACATT---GCGTGTT-A-TATTT-------------A----TTTGCAACGAAACTT---------ATA--A-------------T-------TCA---CAT-----------TATC
gi|10 : tatatttcgatgttgacaactagtacataatgcttttactattgttaaataatccgagtctgaagtcgtggacaacagttgtatttgtaacatacatgtagttactaatattatgcgaaaacagaaaaaaggaaaattgaaaattctatatcatacatggattaaaactattacaaactagggcagtatttcattaaaaaacaactgagatttacaatttagaatttcataacttttggtataatgaacacattcaaacccaaatgttttaatgtaatgttgcattacataccgactaatttggatgcatttcttttccaataaacaataaaatcttattcattcagcgagtctttttgacctggcaaaaaaaaaccctcaaaaaaccccaaaatacccccccccccttttttttgttttagattagaaatagacttgaaacaacgaaaccgagtaaaacgtatttcaagatgatgcattgataaaaataagtcctcgcaatcataaaggtaagttgctatagccaccagattgttacagattcacgcaaagttatgttgaagaaaaacatagaattttgtggctaaattaatattatacattattttactttgaaaaacatgtctatgaactatttctataccacattgtagctgatacaggtgtacaaagtatgcaagcttgagaaataggaaggcggatgagtcaaattttcagaagcaatacgtgtttcattcacatgtcaacgtttttgacaacatagatagatCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ATCTCGC------AC-------TAACaca
gi|10 : GTTAGTGTAAGGTAACGAATCAA-TAAC-CCTTGACTTATGAgttagtgtaaggtaacgaatcaataacccttgacttatga
gi|11 : cttcacaagtcaagggttattgattcgttatctcgcactaacTCTTCACAAGTC-AAGG-G--T---AT-TGAT-TCGTTAACCTCGCGAGGTAACGAATCAATAACCCTTGAC
gi|11 : caACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ttgt
gi|12 : catcttcacaagtcaagggtattgattcgttaacctcTTCACAAGTC-AAGG-G-TT---AT-TGAT-TTG
gi|12 : AAGGGTTATTGATTTGCACTAGTTAGTGTGAGGTAATGAATCAA-TGAT-CCTTGcactagttagtgtgaggtaatgaatcaatgatccttgtg
gi|13 : ttcacaagtcTTCACAAGTC-AAGG-GTTT---AT-TGAT-T-GTT-ACCTCGCGAGGTAACGAATCAATAACCCTTAACtg
gi|14 : aaTCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ATTCAA---TAACCCTTG
gi|15 : aTCTTCACAAGTC-AAGG-A-TT---AT-AGAT-TTGTT-ACCTTGC------AC-------TAA
gi|16 : TCTGCACAAGTC-AAAG-G-TT---AT-TGAT-TCTTT-ACCTTGC------AC-------TAtg
gi|17 : CTTCACAAGTCCAAGG-A-TT---AT-AGAT-TTGTT-ACCTT-C------AC-------Tt
gi|18 : TCTTC-CAAGTC-AAGG-G-TTT--AC-TGAT-TCGTT-ACCTCGC------
gi|3 : CTTGACAAGTC-TAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCAAAACATGAGT-TCAAGATTGGAGATGATT-CAATACGCT----AAA----------TGGAATCAGC--CAAT----GAGATTTCTTGTTT--GAT-----ATTAGGTAA-AAGCA-CAAATGAAAAGTACAAAAACACATGTATCTTACGTGGG-CCCTTTT--CTCAACATCACGA-ACAAT---GTGCGCT-AGT-TTT-------------A----T------------TTGAAACGTACATGTAA-------------TTAATATATCA---C-T-----------TTTAGGTCCGTTAATTGCTATTATAACT-TATCAT-----TTCGTACATAATTAATTTTAAAATAAAAATAAATATTAACGT-GTATAA-TTTGTTAAAACACA-A--------------------------TAGAC-G-ACTTACTTGGGCAA-TCTGTTGTTTTC-ATGCGGCTT---GTG-TTCTAAAACTTCGT----TTG--------------ATAT-TTTTTGCAAATTAATCTATGGTG--TTGGCCTTATGGTAACTGG-CAACAAATTC-----------------GATCCCGCGCCACGTGTGTTTGG------TTTGGGCCGATCATATAA--TAT------ATGGAGGCTAC--ATGCAGGCCACTGAA-CAATCA----------CTTTGAGCCCATGTTTTGAATGGTGCATG-TGT-CAAGGGTTAGTGTAAGGTAACGAACCAATTAAC-CCTTGACTTGTG
gi|4 : TCTTCACAAGTC-AAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------CAACCCTTGACATCGGTCACCATTCAAGACATGGGT-TTGAGACAGAGGATGATG-CAATACACTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTGGTTTCAGAT-GTAAGTTTGGTAAGGAGCA-TAAACAGAAAGTACAAA-----ATG-GTCTTATGTGGGGTATTTTT--CTCAACATCATGA-ACATT---CCATGCC-A-T-TTT-------------A----T------------TC---------ATA--A-------------T-------TCA---CAT-----------TTTCCATCCTTTAATTGT---TGGTGCTGTTTTAT-----TGA-----------------AA--------------AAACAT-AATCAA-C-------AACATACA--------------------------TTGAC-A--------------A-TCCGTGG-TTTC-ATGTGGCTT---GTA-TTTTGAAATTTTGTCTAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTATCG-G--T--G--TAGTGGTAACTAGCC-GTAAATTCTA---CGCCATGTTTAAGACGCCGCACCATGCATTTGTGGTAAAATTTTTGGCCGATTGTAAAAGCTGTTTTTTGATTGGGTCT-CTGATACAAGCAGCAAAACCAATCATA-TGCTCCGTTTAGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACAAATCAA-TAAC-CTTATACTTGTGAA
gi|5 : TCTTCGCAAGTC-ATGG-G-TT---G--------------CTTCGC------AC-------TA--CTTTGACATCAGTTACCATTCAAAGCGTGGGG-TTGAGACGGAGGATGACG-CAATACGT---------------------------C--CTAT----GAGATTCCTCGTTTTAGAT-GCAGGTTTGGTAA-GCGCA-TAAACGGAAAGTAAAAA-----AC-------AAATGG--TCTTTCT--C-CAACATCATGA-ACATT---GCATGTTGA-T-TTT-------------ATTTAT------------TT---------ATG--A-------------T-------TTA---CAA-----------TTTTCACCATTTAATTGC---TGTAGCT-TATTAT-----TTAGTTCATGGTCAATATTGAA--------------TACCGT-GTTCAA-TTTGTTGAAACATA-A--------------------------TCGAC-ACCCATACCAGAACTA-TCCGCCG-TTTTAATTCTGCCA---GTA-TCCTAAAACTTTGCATAATTATTTCTTTAAAGAAAATAAAATGCTGAAAATCCATCTACGA-AATCC-GCCAAGTGGTATCT-----ACA-----CATGTCACC--------GACGCCGTGCC
gi|6 : aTCACAAGTC-AAGGTG-TTTACATGTAGCATCGTT-ACCTCGCTGT---A--------TAACCCTTGACATT-----------GAAACGTTGGTATTGAGGCGGAGAACGTCGATAATG-GCCAATTAAA----------TTAAATAAACAACAAT----GA-AT--CTTG-TTCAGATAGCAAGTTT--------------------------AAA-----ATT-GTC-TACGT-GGTTCCTTTTAGCT-AACATCATGACACGCTTTGGTATACA-A-T-TTT-------------A----T------------TT---------GTA--ACGTACCATAGATTT-------TTAAATCATGATAAATTACCTTTTTGTTCTTTAATAG----TGAAGTT-TATTATTAAGATTATTTTACAATCAGTCTTTAT--------------TAATGTAATTGAATTTTGATGCAACACA-ACATTAATTCAATTTGTTACAACACAATCGACAA-ACATCTCGGGAC-ATTCTGT---TTTC-ATGCAGGTTCCCGAATTTCTAAAAt
gi|7 : ccatcAGTT-GAGG-G-TT---AT-TGAT-TCGTT-ACCTTGC------AC-------TAACCATTGACATCAGTCGCCATTTGAAATCTGAGC-TTGAGACAAAGAATGCCG-CAATATGCTAC--AAAAATGTAAAATTTAAATCAGC--CAAT----GATATTCCTTGTTACAGAT-TAAAGTTTGGTAA-GAACATTAAACGGAGAGTACAGC-----ATG-GCCTTACACGAGTTCCTT-----TGAACATCCTGA-ACATT---GCGTACT-A-C-TTTTATTTGTAATGAAA----T------------TT---------ATG--A-------------T-------TCA---TAT-----------TTT--GTCCTATAATTGT---CACAGCT-TATGAT-----TTAGTTCATATTCAATGTTCAA--------------tactcg
gi|8 : CATGTTGCC-------AG-CACCGCACAATGCATGTTAGTTTC-ATTTTTGGCAGATTACAAAAGTCATTTTCTGATTGGTTCTA-TGCTGCAGACTACAACTCCAGTCATATT-CTCCGCCTTGAGCCGATGTTTTAAATGGAGACTGATGT-CAATAGTTAGAGCGAGGTAACACATCAA-TAACATATTGACTTGTGAAa
gi|9 : aACAA-TC-AAGG-G-TG---AT-TGAT-TTGTTGACATCGC------AC-------TGACCTTTGACATCAATAACCGTTCACAATATGTTT-TTGAGACGGAGGGTGACG-CAACAAGCTA---AAA----------ATAAATCATC--CATT----GAGATCCCTTGAATAAGAT-GCCAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----gat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATATACTTCGATATTGACAACAGTGATTTTTTAAAGGATAACTTATTATCTGAGTCGTAAGTCGGGAAAAACATACATGGCCAAATAGTTACTACCGGGTAATATTGTGCGAAAACAGGAAAGAGGTGAGGATAACTGAAAAATCTACATCATGCCTAAATACATGTACTGGACTAAAACTACATTACAAGTTAAGGCATTATTGCATAACAAAAATGACTGAGAATCACAATTAAGCATCTCAAAACTTTTGTGTTATTATCAATATTGTATGCAAACCCAAATGACTTAACGTAACAATGTATTACATATCGACTAATTCGGAAGTGCCTCTTTTCTAATAAAATGCGATTCTTTCAACGATTCTTTTTGACCTGGCAAAGAACAAGACATTTTCACACTGAATCACGAAAAAAAAATAAGAACGTTTTTTAAATGATGCTATAAAGAAGATGATGTATAAATAAACATAGATTATTTGTGATTATGAAGATAAGTCACTGTAGCCAGAAAATTGATACAGATTCATGCAAAGTAAGGGTTTCAGAAGAAAACAGTTTTGTGGCTTCATTTTACTTTCGAATATTTGTCTATGAAGCATTCTAATACAACAGTTGCAAATGATACAGGTGTACAAAATATGCAAGCTTGAAAGGTAGGCAGGGGAACCAAATTATCAGATTTACCCATTTTCGGTCCATATAGGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333 222222222222222222 1111 11 1 11111 11111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 2222 22222 44444444444444 1 1 111111111111111111111111111111111111111111111111111 111 1 111 1 33 111 4444444 777777777777777777777777777777 4444 11 222 33333 1
lowQualScore : 2 2 2 666 2 2 5 000000000000000 0 4 5 0 5 5 555555555555555555 77 2222 4 0 1 3 00 5 1 44444 99 3 7 1 22222 6 111 6 666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 0000 1 8 00000 5 1 4 3 3 77777777777777 0 0 0 3 3333 222222222222222222222222222222222222222222222222222 999 0 0 777 0 0 44 000 3 7 0 0 8888888 6 333333333333333333333333333333 3 0 0 0 9999 00 9999 111 1 6 22222 0 3 0 8 8
lowQualScore : . . . ... . . . ............... . . . . . . .................. .. .... . . . . .. . . ..... .. . . . ..... . ... . ... ......................................................................................... .. .... . . ..... . . . . . .............. . . . . .... ................................................... ... . . ... . . .. ... . . . . ....... . .............................. . . . . .... .. .... ... . . ..... . . . . .
lowQualScore : 4 4 4 555 4 4 0 333333333333333 1 0 7 4 7 3 666666666666666666 99 1111 3 1 7 0 00 7 4 33333 22 2 2 7 00000 7 777 7 888 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 4444 0 0 00000 0 0 0 8 8 00000000000000 0 2 0 2 8888 222222222222222222222222222222222222222222222222222 000 0 2 555 0 7 00 000 7 3 7 7 3333333 7 333333333333333333333333333333 2 2 7 7 0000 33 0000 333 0 7 00000 2 2 0 0 0
consensus : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTGC---TGNAGCT-TATTAT-----TTAGTTCATAATCAATNTTNAA--------------TAACGT-GTTCAA-TTTGTTGAAACACA-A--------------------------TCGAC-A-ACATACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
Reference ( family-921 ) : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTGC---TGNAGCT-TATTAT-----TTAGTTCATAATCAATNTTNAA--------------TAACGT-GTTCAA-TTTGTTGAAACACA-A--------------------------TCGAC-A-ACATACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
gi|1 : AATC-AAGG-G-AT---AT-TCAT-TCGTT-ACCTCGC------AT-------TAACCCTTGACATCAGACACCATTCGATACCTGGGC-TTGAGTTAGAGAATGATG-CAATATGCTA---AAA----------TTAAATCAGA--CAATTGAAGATATTCATTGTTTCAAAT-TCAAGTTTGGTAA-AAACATTAAATGGAAATTACATA-----ATG-GTCTTATATGAGTTTCCTTT--CATGACATCATGA-ACATT---GCGTGTT-A-TATTT-------------A----TTTGCAACGAAACTT---------ATA--A-------------T-------TCA---CAT-----------TATC
gi|10 : tatatttcgatgttgacaactagtacataatgcttttactattgttaaataatccgagtctgaagtcgtggacaacagttgtatttgtaacatacatgtagttactaatattatgcgaaaacagaaaaaaggaaaattgaaaattctatatcatacatggattaaaactattacaaactagggcagtatttcattaaaaaacaactgagatttacaatttagaatttcataacttttggtataatgaacacattcaaacccaaatgttttaatgtaatgttgcattacataccgactaatttggatgcatttcttttccaataaacaataaaatcttattcattcagcgagtctttttgacctggcaaaaaaaaaccctcaaaaaaccccaaaatacccccccccccttttttttgttttagattagaaatagacttgaaacaacgaaaccgagtaaaacgtatttcaagatgatgcattgataaaaataagtcctcgcaatcataaaggtaagttgctatagccaccagattgttacagattcacgcaaagttatgttgaagaaaaacatagaattttgtggctaaattaatattatacattattttactttgaaaaacatgtctatgaactatttctataccacattgtagctgatacaggtgtacaaagtatgcaagcttgagaaataggaaggcggatgagtcaaattttcagaagcaatacgtgtttcattcacatgtcaacgtttttgacaacatagatagatCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ATCTCGC------AC-------TAACaca
gi|10 : GTTAGTGTAAGGTAACGAATCAA-TAAC-CCTTGACTTATGAgttagtgtaaggtaacgaatcaataacccttgacttatga
gi|11 : cttcacaagtcaagggttattgattcgttatctcgcactaacTCTTCACAAGTC-AAGG-G--T---AT-TGAT-TCGTTAACCTCGCGAGGTAACGAATCAATAACCCTTGAC
gi|11 : caACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ttgt
gi|12 : catcttcacaagtcaagggtattgattcgttaacctcTTCACAAGTC-AAGG-G-TT---AT-TGAT-TTG
gi|12 : AAGGGTTATTGATTTGCACTAGTTAGTGTGAGGTAATGAATCAA-TGAT-CCTTGcactagttagtgtgaggtaatgaatcaatgatccttgtg
gi|13 : ttcacaagtcTTCACAAGTC-AAGG-GTTT---AT-TGAT-T-GTT-ACCTCGCGAGGTAACGAATCAATAACCCTTAACtg
gi|14 : aaTCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ATTCAA---TAACCCTTG
gi|15 : aTCTTCACAAGTC-AAGG-A-TT---AT-AGAT-TTGTT-ACCTTGC------AC-------TAA
gi|16 : TCTGCACAAGTC-AAAG-G-TT---AT-TGAT-TCTTT-ACCTTGC------AC-------TAtg
gi|17 : CTTCACAAGTCCAAGG-A-TT---AT-AGAT-TTGTT-ACCTT-C------AC-------Tt
gi|18 : TCTTC-CAAGTC-AAGG-G-TTT--AC-TGAT-TCGTT-ACCTCGC------
gi|3 : CTTGACAAGTC-TAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCAAAACATGAGT-TCAAGATTGGAGATGATT-CAATACGCT----AAA----------TGGAATCAGC--CAAT----GAGATTTCTTGTTT--GAT-----ATTAGGTAA-AAGCA-CAAATGAAAAGTACAAAAACACATGTATCTTACGTGGG-CCCTTTT--CTCAACATCACGA-ACAAT---GTGCGCT-AGT-TTT-------------A----T------------TTGAAACGTACATGTAA-------------TTAATATATCA---C-T-----------TTTAGGTCCGTTAATTGCTATTATAACT-TATCAT-----TTCGTACATAATTAATTTTAAAATAAAAATAAATATTAACGT-GTATAA-TTTGTTAAAACACA-A--------------------------TAGAC-G-ACTTACTTGGGCAA-TCTGTTGTTTTC-ATGCGGCTT---GTG-TTCTAAAACTTCGT----TTG--------------ATAT-TTTTTGCAAATTAATCTATGGTG--TTGGCCTTATGGTAACTGG-CAACAAATTC-----------------GATCCCGCGCCACGTGTGTTTGG------TTTGGGCCGATCATATAA--TAT------ATGGAGGCTAC--ATGCAGGCCACTGAA-CAATCA----------CTTTGAGCCCATGTTTTGAATGGTGCATG-TGT-CAAGGGTTAGTGTAAGGTAACGAACCAATTAAC-CCTTGACTTGTG
gi|4 : TCTTCACAAGTC-AAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------CAACCCTTGACATCGGTCACCATTCAAGACATGGGT-TTGAGACAGAGGATGATG-CAATACACTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTGGTTTCAGAT-GTAAGTTTGGTAAGGAGCA-TAAACAGAAAGTACAAA-----ATG-GTCTTATGTGGGGTATTTTT--CTCAACATCATGA-ACATT---CCATGCC-A-T-TTT-------------A----T------------TC---------ATA--A-------------T-------TCA---CAT-----------TTTCCATCCTTTAATTGT---TGGTGCTGTTTTAT-----TGA-----------------AA--------------AAACAT-AATCAA-C-------AACATACA--------------------------TTGAC-A--------------A-TCCGTGG-TTTC-ATGTGGCTT---GTA-TTTTGAAATTTTGTCTAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTATCG-G--T--G--TAGTGGTAACTAGCC-GTAAATTCTA---CGCCATGTTTAAGACGCCGCACCATGCATTTGTGGTAAAATTTTTGGCCGATTGTAAAAGCTGTTTTTTGATTGGGTCT-CTGATACAAGCAGCAAAACCAATCATA-TGCTCCGTTTAGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACAAATCAA-TAAC-CTTATACTTGTGAA
gi|5 : TCTTCGCAAGTC-ATGG-G-TT---G--------------CTTCGC------AC-------TA--CTTTGACATCAGTTACCATTCAAAGCGTGGGG-TTGAGACGGAGGATGACG-CAATACGT---------------------------C--CTAT----GAGATTCCTCGTTTTAGAT-GCAGGTTTGGTAA-GCGCA-TAAACGGAAAGTAAAAA-----AC-------AAATGG--TCTTTCT--C-CAACATCATGA-ACATT---GCATGTTGA-T-TTT-------------ATTTAT------------TT---------ATG--A-------------T-------TTA---CAA-----------TTTTCACCATTTAATTGC---TGTAGCT-TATTAT-----TTAGTTCATGGTCAATATTGAA--------------TACCGT-GTTCAA-TTTGTTGAAACATA-A--------------------------TCGAC-ACCCATACCAGAACTA-TCCGCCG-TTTTAATTCTGCCA---GTA-TCCTAAAACTTTGCATAATTATTTCTTTAAAGAAAATAAAATGCTGAAAATCCATCTACGA-AATCC-GCCAAGTGGTATCT-----ACA-----CATGTCACC--------GACGCCGTGCC
gi|6 : aTCACAAGTC-AAGGTG-TTTACATGTAGCATCGTT-ACCTCGCTGT---A--------TAACCCTTGACATT-----------GAAACGTTGGTATTGAGGCGGAGAACGTCGATAATG-GCCAATTAAA----------TTAAATAAACAACAAT----GA-AT--CTTG-TTCAGATAGCAAGTTT--------------------------AAA-----ATT-GTC-TACGT-GGTTCCTTTTAGCT-AACATCATGACACGCTTTGGTATACA-A-T-TTT-------------A----T------------TT---------GTA--ACGTACCATAGATTT-------TTAAATCATGATAAATTACCTTTTTGTTCTTTAATAG----TGAAGTT-TATTATTAAGATTATTTTACAATCAGTCTTTAT--------------TAATGTAATTGAATTTTGATGCAACACA-ACATTAATTCAATTTGTTACAACACAATCGACAA-ACATCTCGGGAC-ATTCTGT---TTTC-ATGCAGGTTCCCGAATTTCTAAAAt
gi|7 : ccatcAGTT-GAGG-G-TT---AT-TGAT-TCGTT-ACCTTGC------AC-------TAACCATTGACATCAGTCGCCATTTGAAATCTGAGC-TTGAGACAAAGAATGCCG-CAATATGCTAC--AAAAATGTAAAATTTAAATCAGC--CAAT----GATATTCCTTGTTACAGAT-TAAAGTTTGGTAA-GAACATTAAACGGAGAGTACAGC-----ATG-GCCTTACACGAGTTCCTT-----TGAACATCCTGA-ACATT---GCGTACT-A-C-TTTTATTTGTAATGAAA----T------------TT---------ATG--A-------------T-------TCA---TAT-----------TTT--GTCCTATAATTGT---CACAGCT-TATGAT-----TTAGTTCATATTCAATGTTCAA--------------tactcg
gi|8 : CATGTTGCC-------AG-CACCGCACAATGCATGTTAGTTTC-ATTTTTGGCAGATTACAAAAGTCATTTTCTGATTGGTTCTA-TGCTGCAGACTACAACTCCAGTCATATT-CTCCGCCTTGAGCCGATGTTTTAAATGGAGACTGATGT-CAATAGTTAGAGCGAGGTAACACATCAA-TAACATATTGACTTGTGAAa
gi|9 : aACAA-TC-AAGG-G-TG---AT-TGAT-TTGTTGACATCGC------AC-------TGACCTTTGACATCAATAACCGTTCACAATATGTTT-TTGAGACGGAGGGTGACG-CAACAAGCTA---AAA----------ATAAATCATC--CATT----GAGATCCCTTGAATAAGAT-GCCAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----gat
blockSeqs : C T T TAC G A A GAGGTAACGAATCAA A A A C TACAAAAATGTAAAAT AA . G T C AG G T AACAC GT T G T AGCT C TTG G GT ATTTGTAACGTACCATAGATTTTTAAATCATGATAAATTACC CC T G G TAAGA G T G A G . A T T TTGA ACATTAATTCAATTTGTTACAACACAATCGACAAACATCTCGGGACAT GG A CCC T CT TTC C A AATCC C AGCCGTAAATTCTACGCCATGTTTAA A TAAA GC TTTT CT A C TATG A . T A
blockSeqs : . . . T . . G GAGGTAACGAATCAA A . . C CAATTAAA . . G T T G . . . G T T T CTC . . . T ATTTGAAACGTACATGTAATTAATATATCACT TC C T . . T T A C T . . . T ATGC ATCGACACCCATACCAGAACTA CG . . . AT TTT T A GT . ACACATGTCACC A TTC GT TTTC AT T C TATT A . . .
blockSeqs : . . . . . . . ATTCAA G . . C TAAAA . . G T C G . . . T T T C CTC . . . T TATTTGTAATGAAATTTATGATTCATAT TT T A . . G T T G C . . . . . CATTGACAA . . . . . . . . .
blockSeqs : . . . . . . . TGTA G . . T TAAAA . . T T C T . . . G . . T CC . . . T ATTTATTTATGATTTACAA . . C . . . . . . . . . .
blockSeqs : . . . . . . . AC C . . A TAAA . . G A A G . . . . . . . TG . . . C ATTCATAATTCACAT
blockSeqs : . . . . . . . AC A . . . . . . . . . . . . .
blockSeqs : . . . . . . . AC
blockSeqs : . . . . . . . AC
blockSeqs : . . . . . . . AC
blockSeqs : . . . . . . . AC
blockSeqs : . . . . . . . AC
blockSeqs : . . . . . . . AC
blockSeqs : . . . . . . . AC
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : **** CTC** T** T*** **************
originalCons : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTGC---TGNAGCT-TATTAT-----TTAGTTCATAATCAATNTTNAA--------------TAACGT-GTTCAA-TTTGTTGAAACACA-A--------------------------TCGAC-A-ACATACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
finalCons : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTTCTC--AACATCATGA-ACATT---GCGTGCT-AT--TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTGT---TGNAGCT-TATTAT-----TTAGTTCATAATCAATNTTNAA--------------TAACGT-GTTCAA-TTTGTTGAAACACA-A--------------------------TCGAC-A-ACATACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATATACTTCGATATTGACAACAGTGATTTTTTAAAGGATAACTTATTATCTGAGTCGTAAGTCGGGAAAAACATACATGGCCAAATAGTTACTACCGGGTAATATTGTGCGAAAACAGGAAAGAGGTGAGGATAACTGAAAAATCTACATCATGCCTAAATACATGTACTGGACTAAAACTACATTACAAGTTAAGGCATTATTGCATAACAAAAATGACTGAGAATCACAATTAAGCATCTCAAAACTTTTGTGTTATTATCAATATTGTATGCAAACCCAAATGACTTAACGTAACAATGTATTACATATCGACTAATTCGGAAGTGCCTCTTTTCTAATAAAATGCGATTCTTTCAACGATTCTTTTTGACCTGGCAAAGAACAAGACATTTTCACACTGAATCACGAAAAAAAAATAAGAACGTTTTTTAAATGATGCTATAAAGAAGATGATGTATAAATAAACATAGATTATTTGTGATTATGAAGATAAGTCACTGTAGCCAGAAAATTGATACAGATTCATGCAAAGTAAGGGTTTCAGAAGAAAACAGTTTTGTGGCTTCATTTTACTTTCGAATATTTGTCTATGAAGCATTCTAATACAACAGTTGCAAATGATACAGGTGTACAAAATATGCAAGCTTGAAAGGTAGGCAGGGGAACCAAATTATCAGATTTACCCATTTTCGGTCCATATAGGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333 222222222222222222 1111 11 1 11111 11111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 1111 22222 44444444444444 1 1 111111111111111111111111111111111111111111111111111 111 1 111 1 33 111 4444444 777777777777777777777777777777 4444 11 222 33333 1
lowQualScore : 2 2 2 666 2 2 5 000000000000000 0 4 5 0 5 5 555555555555555555 77 2222 4 0 1 3 00 5 1 44444 99 3 7 1 22222 6 111 6 666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 7777 1 8 00000 5 1 4 3 3 77777777777777 0 0 0 3 3333 222222222222222222222222222222222222222222222222222 999 0 0 777 0 0 44 000 3 7 0 0 8888888 6 333333333333333333333333333333 3 0 0 0 9999 00 9999 111 1 6 22222 0 3 0 8 8
lowQualScore : . . . ... . . . ............... . . . . . . .................. .. .... . . . . .. . . ..... .. . . . ..... . ... . ... ......................................................................................... .. .... . . ..... . . . . . .............. . . . . .... ................................................... ... . . ... . . .. ... . . . . ....... . .............................. . . . . .... .. .... ... . . ..... . . . . .
lowQualScore : 4 4 4 555 4 4 0 333333333333333 1 0 7 4 7 3 666666666666666666 99 1111 3 1 7 0 00 7 4 33333 22 2 2 7 00000 7 777 7 888 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 8888 0 0 00000 0 0 0 8 8 00000000000000 0 2 0 2 8888 222222222222222222222222222222222222222222222222222 000 0 2 555 0 7 00 000 7 3 7 7 3333333 7 333333333333333333333333333333 2 2 7 7 0000 33 0000 333 0 7 00000 2 2 0 0 0
consensus : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTG---TTGNAGCT-TATTAT-----TTAGTTCATAATCAATNTTNAA--------------TAACGT-GTTCAA-TTTGTTGAAACACA-A--------------------------TCGAC-A-ACATACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
Reference ( family-921 ) : TCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCGAAACGTGGGT-TTGAGACGGAGGATGACG-CAATACGCTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTTGTTTCAGAT-GCAAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----ATG-GTCTTACGTGGGTTCCTTTT--CTCAACATCATGA-ACATT---GCGTGCT-A-T-TTT-------------A----T------------TT---------ATG--A-------------T-------TCA---CAT-----------TTTCCGTCCTTTAATTG---TTGNAGCT-TATTAT-----TTAGTTCATAATCAATNTTNAA--------------TAACGT-GTTCAA-TTTGTTGAAACACA-A--------------------------TCGAC-A-ACATACCGGGAC-A-TCCGTCG-TTTC-ATGCGGCTT---GTA-TTCTAAAACTTCGT-TAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTACGG-G--TC-GCCTAGTGGTAACTGG-C-ACAAATTCCATGTCGCC-------AGACGCCGCGCCACGCGTGTTTGGT---ATTTTTGGCCGATTATAAAAGCTATTTTCTGATTGGGTCTACTGATGCAGGCNACAAAACCAATCATA-T-CTCCGCTTTGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACGAATCAA-TAAC-CCTTGACTTGTGAA
gi|1 : AATC-AAGG-G-AT---AT-TCAT-TCGTT-ACCTCGC------AT-------TAACCCTTGACATCAGACACCATTCGATACCTGGGC-TTGAGTTAGAGAATGATG-CAATATGCTA---AAA----------TTAAATCAGA--CAATTGAAGATATTCATTGTTTCAAAT-TCAAGTTTGGTAA-AAACATTAAATGGAAATTACATA-----ATG-GTCTTATATGAGTTTCCTTT--CATGACATCATGA-ACATT---GCGTGTT-A-TATTT-------------A----TTTGCAACGAAACTT---------ATA--A-------------T-------TCA---CAT-----------TATC
gi|10 : tatatttcgatgttgacaactagtacataatgcttttactattgttaaataatccgagtctgaagtcgtggacaacagttgtatttgtaacatacatgtagttactaatattatgcgaaaacagaaaaaaggaaaattgaaaattctatatcatacatggattaaaactattacaaactagggcagtatttcattaaaaaacaactgagatttacaatttagaatttcataacttttggtataatgaacacattcaaacccaaatgttttaatgtaatgttgcattacataccgactaatttggatgcatttcttttccaataaacaataaaatcttattcattcagcgagtctttttgacctggcaaaaaaaaaccctcaaaaaaccccaaaatacccccccccccttttttttgttttagattagaaatagacttgaaacaacgaaaccgagtaaaacgtatttcaagatgatgcattgataaaaataagtcctcgcaatcataaaggtaagttgctatagccaccagattgttacagattcacgcaaagttatgttgaagaaaaacatagaattttgtggctaaattaatattatacattattttactttgaaaaacatgtctatgaactatttctataccacattgtagctgatacaggtgtacaaagtatgcaagcttgagaaataggaaggcggatgagtcaaattttcagaagcaatacgtgtttcattcacatgtcaacgtttttgacaacatagatagatCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ATCTCGC------AC-------TAACaca
gi|10 : GTTAGTGTAAGGTAACGAATCAA-TAAC-CCTTGACTTATGAgttagtgtaaggtaacgaatcaataacccttgacttatga
gi|11 : cttcacaagtcaagggttattgattcgttatctcgcactaacTCTTCACAAGTC-AAGG-G--T---AT-TGAT-TCGTTAACCTCGCGAGGTAACGAATCAATAACCCTTGAC
gi|11 : caACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ttgt
gi|12 : catcttcacaagtcaagggtattgattcgttaacctcTTCACAAGTC-AAGG-G-TT---AT-TGAT-TTG
gi|12 : AAGGGTTATTGATTTGCACTAGTTAGTGTGAGGTAATGAATCAA-TGAT-CCTTGcactagttagtgtgaggtaatgaatcaatgatccttgtg
gi|13 : ttcacaagtcTTCACAAGTC-AAGG-GTTT---AT-TGAT-T-GTT-ACCTCGCGAGGTAACGAATCAATAACCCTTAACtg
gi|14 : aaTCTTCACAAGTC-AAGG-G-TT---AT-TGAT-TCGTT-ACCTCGC------ATTCAA---TAACCCTTG
gi|15 : aTCTTCACAAGTC-AAGG-A-TT---AT-AGAT-TTGTT-ACCTTGC------AC-------TAA
gi|16 : TCTGCACAAGTC-AAAG-G-TT---AT-TGAT-TCTTT-ACCTTGC------AC-------TAtg
gi|17 : CTTCACAAGTCCAAGG-A-TT---AT-AGAT-TTGTT-ACCTT-C------AC-------Tt
gi|18 : TCTTC-CAAGTC-AAGG-G-TTT--AC-TGAT-TCGTT-ACCTCGC------
gi|3 : CTTGACAAGTC-TAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------TAACCCTTGACATCAGTCACCATTCAAAACATGAGT-TCAAGATTGGAGATGATT-CAATACGCT----AAA----------TGGAATCAGC--CAAT----GAGATTTCTTGTTT--GAT-----ATTAGGTAA-AAGCA-CAAATGAAAAGTACAAAAACACATGTATCTTACGTGGG-CCCTTTT--CTCAACATCACGA-ACAAT---GTGCGCT-AGT-TTT-------------A----T------------TTGAAACGTACATGTAA-------------TTAATATATCA---C-T-----------TTTAGGTCCGTTAATTGCTATTATAACT-TATCAT-----TTCGTACATAATTAATTTTAAAATAAAAATAAATATTAACGT-GTATAA-TTTGTTAAAACACA-A--------------------------TAGAC-G-ACTTACTTGGGCAA-TCTGTTGTTTTC-ATGCGGCTT---GTG-TTCTAAAACTTCGT----TTG--------------ATAT-TTTTTGCAAATTAATCTATGGTG--TTGGCCTTATGGTAACTGG-CAACAAATTC-----------------GATCCCGCGCCACGTGTGTTTGG------TTTGGGCCGATCATATAA--TAT------ATGGAGGCTAC--ATGCAGGCCACTGAA-CAATCA----------CTTTGAGCCCATGTTTTGAATGGTGCATG-TGT-CAAGGGTTAGTGTAAGGTAACGAACCAATTAAC-CCTTGACTTGTG
gi|4 : TCTTCACAAGTC-AAGA-G-TT---AT-TGAT-TCGTT-ACCTCGC------AC-------CAACCCTTGACATCGGTCACCATTCAAGACATGGGT-TTGAGACAGAGGATGATG-CAATACACTA---AAA----------TTAAATCAGC--CAAT----GAGATTCCTGGTTTCAGAT-GTAAGTTTGGTAAGGAGCA-TAAACAGAAAGTACAAA-----ATG-GTCTTATGTGGGGTATTTTT--CTCAACATCATGA-ACATT---CCATGCC-A-T-TTT-------------A----T------------TC---------ATA--A-------------T-------TCA---CAT-----------TTTCCATCCTTTAATTG---TTGGTGCTGTTTTAT-----TGA-----------------AA--------------AAACAT-AATCAA-C-------AACATACA--------------------------TTGAC-A--------------A-TCCGTGG-TTTC-ATGTGGCTT---GTA-TTTTGAAATTTTGTCTAATTGTTCCTTCAAAGAAAATATATTTCCGCAAATCAATCTATCG-G--T--G--TAGTGGTAACTAGCC-GTAAATTCTA---CGCCATGTTTAAGACGCCGCACCATGCATTTGTGGTAAAATTTTTGGCCGATTGTAAAAGCTGTTTTTTGATTGGGTCT-CTGATACAAGCAGCAAAACCAATCATA-TGCTCCGTTTAGAGCCCATGTTTTGAATGGTGACTGATGT-CAATGGTTAGTGTGAGGTAACAAATCAA-TAAC-CTTATACTTGTGAA
gi|5 : TCTTCGCAAGTC-ATGG-G-TT---G--------------CTTCGC------AC-------TA--CTTTGACATCAGTTACCATTCAAAGCGTGGGG-TTGAGACGGAGGATGACG-CAATACGT---------------------------C--CTAT----GAGATTCCTCGTTTTAGAT-GCAGGTTTGGTAA-GCGCA-TAAACGGAAAGTAAAAA-----AC-------AAATGG--TCTTTCT--C-CAACATCATGA-ACATT---GCATGTTGA-T-TTT-------------ATTTAT------------TT---------ATG--A-------------T-------TTA---CAA-----------TTTTCACCATTTAATTG---CTGTAGCT-TATTAT-----TTAGTTCATGGTCAATATTGAA--------------TACCGT-GTTCAA-TTTGTTGAAACATA-A--------------------------TCGAC-ACCCATACCAGAACTA-TCCGCCG-TTTTAATTCTGCCA---GTA-TCCTAAAACTTTGCATAATTATTTCTTTAAAGAAAATAAAATGCTGAAAATCCATCTACGA-AATCC-GCCAAGTGGTATCT-----ACA-----CATGTCACC--------GACGCCGTGCC
gi|6 : aTCACAAGTC-AAGGTG-TTTACATGTAGCATCGTT-ACCTCGCTGT---A--------TAACCCTTGACATT-----------GAAACGTTGGTATTGAGGCGGAGAACGTCGATAATG-GCCAATTAAA----------TTAAATAAACAACAAT----GA-AT--CTTG-TTCAGATAGCAAGTTT--------------------------AAA-----ATT-GTC-TACGT-GGTTCCTTTTAGCT-AACATCATGACACGCTTTGGTATACA-A-T-TTT-------------A----T------------TT---------GTA--ACGTACCATAGATTT-------TTAAATCATGATAAATTACCTTTTTGTTCTTTAATAG----TGAAGTT-TATTATTAAGATTATTTTACAATCAGTCTTTAT--------------TAATGTAATTGAATTTTGATGCAACACA-ACATTAATTCAATTTGTTACAACACAATCGACAA-ACATCTCGGGAC-ATTCTGT---TTTC-ATGCAGGTTCCCGAATTTCTAAAAt
gi|7 : ccatcAGTT-GAGG-G-TT---AT-TGAT-TCGTT-ACCTTGC------AC-------TAACCATTGACATCAGTCGCCATTTGAAATCTGAGC-TTGAGACAAAGAATGCCG-CAATATGCTAC--AAAAATGTAAAATTTAAATCAGC--CAAT----GATATTCCTTGTTACAGAT-TAAAGTTTGGTAA-GAACATTAAACGGAGAGTACAGC-----ATG-GCCTTACACGAGTTCCTT-----TGAACATCCTGA-ACATT---GCGTACT-A-C-TTTTATTTGTAATGAAA----T------------TT---------ATG--A-------------T-------TCA---TAT-----------TTT--GTCCTATAATTG---TCACAGCT-TATGAT-----TTAGTTCATATTCAATGTTCAA--------------tactcg
gi|8 : CATGTTGCC-------AG-CACCGCACAATGCATGTTAGTTTC-ATTTTTGGCAGATTACAAAAGTCATTTTCTGATTGGTTCTA-TGCTGCAGACTACAACTCCAGTCATATT-CTCCGCCTTGAGCCGATGTTTTAAATGGAGACTGATGT-CAATAGTTAGAGCGAGGTAACACATCAA-TAACATATTGACTTGTGAAa
gi|9 : aACAA-TC-AAGG-G-TG---AT-TGAT-TTGTTGACATCGC------AC-------TGACCTTTGACATCAATAACCGTTCACAATATGTTT-TTGAGACGGAGGGTGACG-CAACAAGCTA---AAA----------ATAAATCATC--CATT----GAGATCCCTTGAATAAGAT-GCCAGTTTGGTAA-GAGCA-TAAACGGAAAGTACAAA-----gat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATATACTTCGATATTGACAACAGTGATTTTTTAAAGGATAACTTATTATCTGAGTCGTAAGTCGGGAAAAACATACATGGCCAAATAGTTACTACCGGGTAATATTGTGCGAAAACAGGAAAGAGGTGAGGATAACTGAAAAATCTACATCATGCCTAAATACATGTACTGGACTAAAACTACATTACAAGTTAAGGCATTATTGCATAACAAAAATGACTGAGAATCACAATTAAGCATCTCAAAACTTTTGTGTTATTATCAATATTGTATGCAAACCCAAATGACTTAACGTAACAATGTATTACATATCGACTAATTCGGAAGTGCCTCTTTTCTAATAAAATGCGATTCTTTCAACGATTCTTTTTGACCTGGCAAAGAACAAGACATTTTCACACTGAATCACGAAAAAAAAATAAGAACGTTTTTTAAATGATGCTATAAAGAAGATGATGTATAAATAAACATAGATTATTTGTGATTATGAAGATAAGTCACTGTAGCCAGAAAATTGATACAGATTCATGCAAAGTAAGGGTTTCAGAAGAAAACAGTTTTGTGGCTTCATTTTACTTTCGAATATTTGTCTATGAAGCATTCTAATACAACAGTTGCAAATGATACAGGTGTACAAAATATGCAAGCTTGAAAGGTAGGCAGGGGAACCAAATTATCAGATTTACCCATTTTCGGTCCATATAGGAA