lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 1111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 333 2 11 55555555555 1 44444444 1 11 111 66666666666666666666666666666666666666666666666666666666666666666666666 11 99999999999999999999999999 1111 11 11 55555555 66666666666666666 222 11
lowQualScore : 8888888 2 9 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 666 0 99 77777777777 4 4 5 2 2 33333333 3 0 3 33 444 88888888888888888888888888888888888888888888888888888888888888888888888 0 77 88 4 8 2 4 1 0 9 9999 66 4 0 66 4 22222222222222222222222222 1 5 0000 11 11 22222222 22 88888888888888888 000 00
lowQualScore : ....... . . .......................................................................................................................................................................................................................................................................................................................................................................................... ... . .. ........... . . . . . ........ . . . .. ... ....................................................................... . .. .. . . . . . . . .... .. . . .. . .......................... . . .... .. .. ........ .. ................. ... ..
lowQualScore : 7777777 5 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 000 0 00 55555555555 0 0 0 5 5 00000000 0 5 7 88 222 99999999999999999999999999999999999999999999999999999999999999999999999 5 00 99 4 0 1 4 1 1 2 4444 11 7 8 11 4 55555555555555555555555555 3 7 3333 77 55 66666666 00 11111111111111111 777 77
consensus : NNNNCCTATACCA--TANATATTCTTNCTGCATA--T------------CGAG-ATCANG--TTGGGC-AAGTGCCCTGGGGTC---A--CCCAA----ATACTTGTTGCCCATTTCATAATTGTTGAAATGTAGTTATGTATTTAAAACAATTGAG-TTCTGA-CCCTAAACCA----TA--TA---T--TCCTGCTGCATATATCAAGATGCATTG-A---ATTCTG-TA-GGCAAGTGCCCTGGGGTCA-TC-TGACC--CCCCAT-TTTTNATTGTT-NAA-----A--TNTNTTTGAAACGGTTGAG-TTTC-N-ACCCTTAAAGCAAGTATATTCTTTTTGCACGTGTTGCACATAACACATGCACCG----AGCACCAGGTTTTTC-CA--------CCCTAT--TTGCCCGTCAAGGTGAAAAANGAAAATTCCGAATNNANACCNTANTGCANATNTAGAGTACACCACCGNTNANA--TA-G-AGGAGTTCCGGGAACC---AAGTTTT---T---G-----------------TAGAAAA-AC-----GTCGTTTTCNACCCCCAT--ATTTGGCCCCCNGGGT-AAAAATGAAAA-TTCCGAAACC-TATT----GCACATC--TANAGGACA--C-CA-CTATAA-ATCA-NCTTCC-----AAAAGATGAT-TTGGCTA--CTGCGTAAAATGTAA-GAGGAGTTCTGGAAACCAG-G-----TTTGTATAGGAAAA------GCAA-TT----TCGA-CCCCCGTTTG
Reference ( gi|1 ) : TTTGCTTATACCA--TAAACATTCTTGCTTCATA--T------------TGAGTATTATG--TTGGGC-AAGTGCCCTGGAGTC---A--CCCAA----A-AC------C------------------AATATA--C------TTAAATCAGTAGAGGTATTCACCCCTTAACCA----TA--TA---T--TCCAGTTGCATATATCAAGATGCATTG-A-T-ATTCTGATA-AGCTAGTGCCCTGGGGTCA-TCATAACCACCCTTATTTTTTCATTGTT-CAA-----A--TACCTTTAAAATGGTTGAGATTTC-T-ACCCTTAAAGAAAGGAAGTTTT---------TG--ACACA------ATGCACTTTAATAGCACCACATTTTTTTCATTGTGTATCCCAATAATTGCCCCCAAAGGTG-AAAAACAAAATTC-----ACAAACCTTATTGAACATCTACAGGACAACACCGATCACA--TA-G-AGGAGTTCTGGGAACC---AGGTCTT---T---G-----------------TAGACAA-AC-----ATTATTTTCGACCCCTATTAATTTGACCCCCTGGGT-AAGAATGAAAA-TTCCGAAACCATATT----GCACATC--TACAGGACA--C-CA-CTATAA-ATAA-ACTCCTAAT-TAAAAGATGAT-TTGGCCA--CTGTGTAAAATGTAA-AAGGGATTTTGGAAACCAG-G-----TTTGTATAGAAAAA------GCAA-TT----TTGA-CTCCCATTTG
gi|6 : CTTATTCCA--CATTTATTGTTGCTGTATA--T-----------------GTCAAG--CTG--C-AAGTGCCCTGCGGTT---A--TCTAA----A-AC------CCCATTTCATAATTGTTGAAATGTAGTT------TTAAA--ACTTGAGTTTCTGACCCCTAAACCACATATA--TA---T--TCCTGATGCATATATCAAAATACATTG-AGT-ATTCTGACA-GGTAAGTGTCCTGGGGTCA-TTCTGGCCTCCATCATATTTT-ATT-TT-C
gi|7 : acCCTAAACCAAATAAATATTCCTGTTTCCTA--T-----------------ATCAAA--ATGCACTAAGTGCCCTGGGGTT---A--TC
gi|4 : aaaacaattgaggttctgaacTGTACCA--TACATATTCTTCCTGCATA--TGTCAAGTTGCATTGAGAATTCTG--TAGGGC-AAGTGCCCTAGGGTCCATA--CCCCATTTCATATTTGTTGC------------------AATATA--TATGTATTTGAAACAATTGAG---TTT----CTAAACCA----TA--CA---TACTGTAGCTGCACATATCAAAATGCACTGAA-T-ATTCTGATG-GGCAAGTGTCCTGGGttttattgttgaagtttgtttgaaatggttgaaattccaacccttagagcaagtatattctttttgcacgtggcacaatgcaccaagcgccggaattttgtta
gi|12 : gtaccatctgcaacattaaacactagatgctgtcataagacagcactttagtgtttgcctttagatatattctccaatgtgcaaagaagccacaatagttaccagataacataccatatacaTCTTCCTGCATAGAT------------CGAG----ATGCATTGGGC-GAGTGCCCTGGTGTC---ATTCCCAA----a
gi|7 : atacatgtatataatttatagAAAACAATTGAGGTTCTGAACCCTAAACCAAA--TAAATA---T--TCCTGTTTCCTATATCAAAATGCACTA-A------------------GTGCCCTGGGGTTA-TC----------------TTTTATTGTT-GAA-----G--TTTGTTTGAAATGGTTGAAATTCC-A-ACCCTTAGAGCAAGTATATTCTTTTTGCACGTG--GCACA------ATGCACccctatttcatttttg
gi|4 : ACCA----TACATA---T--TCTTCCTGCATATGTCAAGTTGCATTG-A-GAATTCTG-TAGGGCAAGTGCCCTAGGGTC---CATA-----CCCCATTTCATATTTGTTGCAATATATA--TGTATTTGAAACAATTGAG-TTTC-T-Acaagcgccggaattttgtta
gi|6 : gtaccatctgcaacattaaacactagatgctgtcataagacagcactttagtgtttgcctttagatatattctccaatgtgcaaagaagccacaatagttaccagataacataccatatacatgtCA----TT--TA---T--TGTTGCTGTATATGTCAAGCTGCA----------------------AGTGCCCTGCGGTTA-TC-TAA--AACCCCATTTCATAATTGTT-GAA-----ATGTAGTTTTAAAAC--TTGAG-TTTC-TGACCCCTAAAaaccatacatactgtagctgcacatatcaaaatgcactgaatattctgatgggcaagtgtcctggga
gi|12 : accttattcca----TA--TAGTCT--TCC---TGCATAGATCGAGATGCATTG---------------GGCGAGTGCCCTGGTGTCATTC----CCAACCCTA---TTTCATTTTT-ccacatatatattcctgatgcatatatcaaaatacattgagtattctgacaggtaagtgtcctggggtcattctggcctccatcatattttattttc
gi|3 : atacatgtatataattGGAGTCG-TCATGACC--CCTT------TCATT-------------------TTTA-----GTTG----TTCAG-ACCCTTCAAGTAAATATATTTT---------TGTTGCACATAACACATGCACCG----AGCACCAGGTTTTTC-CA--------CCCTAT--TTGCCCGTCAAGGTGAAAAAAGAAAATTCCGAATACATA-CTTAATACACATCTAAAATACACCATCAATAATA--Tg
gi|2 : cGGTG-AAAATAAAAATTC-----TGAAACCATATTGCAAATATAGAG-AC--TACTGCTTAAAAATG-T-AAAAGTTCTGGGTACC---A----TT---T---GGGGGGGGGGGGGGGGGTTGGA-AA-AC-----ATCGTTTTTTACCCTCATACATATA---------GT-AAAATTGAAAA-CTACGCAACCTTATT----GCACATC--TGTTGGACtgtctcccaaaagatgacattgcttttgcataaactgtagcaggagctttgggaacaaagttttttgtataggaaaacgtagtataattttcagcccccgtttggcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|14 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgagaggagttcaaggaactttttttttaaagaaaaaaatcgttatcgacccctttgttgtctctgCA--TAAG-ATGAGTTCTGGAAACCAAGAGGGTTT---T---G-----------------TCGAGAACAC-----GCCGTTTTTGACCCC-----ATTTGGCCCC--------AGGATGAAAtcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : --TA-GCAGGAGCTTTGGGAACA---AAGTTTTTTGT---A-----------------TAGGAAA-ACGTAGTATAATTTTCAGCCCCC----GTTTGGCACTCTGATT-AAAGCTG-AAA-TTACAGAAC---ATT----GCACTTCTATACAGGACA--C-CA-
gi|5 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtttttccaccctatttgcccgtcaaggtgaaaaaagaaaattccgaatacatacttaatacacatctaaaatacaccatcaataatattgtctcccaaaagatgacattgcttttgcataaactgA-A-AGGAGTTCCGGGAGCC---AAGTTTT---TTTTG-----------------TAGAAAA-CC-----ATTGTTTTCTACCTCCATC----TGGTCCCCAGAAT-AAAAATAAAAA-TTCCAAA-----------------TC--TACAGGGTA--C-C----ATCA-GTTA-TCTTC-----CAAAAGCTGAG-TTGGTCA--TCGCATAAAAGGGAT-GAAGAACTCTCCAAATCAG-GCC---TTTTAATAGGAAAA------tcaattgtctaccgaaagtgatt
gi|2 : atctgtaacaagggtttccaagagatgagaactatatgtaA-G-AGGAGTTCAAGGAACT---TTTTTTT---T---A-----------------AAGAAAA-AA-----ATCGTTATCGACCCCT-TTG--TTG--TCTCTGGGT-GAAAATAAAAA-TTCTGAAACCATATT----GCAAATA--TAGAGACTA--C-TG-CT-TAA-Aaaaaaatcgtcgttttgttg
gi|2 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgTT---T---G-----------------TCGACAA--C-----GTCGTTTTT--CTTTCACAAATATGCTCCCCAGGAT-GTAAATGAAAG-TCGTGAAAACACATT----GCACGTC--TACAGGACG--TGTA-C-ACAA-CCAA-CCTTCT--TCCGAAAGCTGAT-TTGACTG--CTGTGTTAGATGTGA-GAGGAGTTCAAGGAACTTT-T-----TTTTTAAAGAAAAA--------AA-TCGTTATCGA-CCCC--TTTGaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|10 : -AC-----GTCATTTTATACTTCT--T--TTTGGCCCC-TAGGT-AA---TGAAAAGTTCCGAAATC-T-TT----GGTCATC--TATAGGATG--C-CA-CCA----ATCATATTCC------AAACGATGAT-TTGGCTA--CTGTGttgtctctgggtgaaaataaaaattctgaaaccatattgcaaatatagagactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : aacTTTTCCACCCT-----ATTTGCCCGTCAAGGTGAAAAAAGAAAA-TTCCGAATACATACTTAATACACATC--TAAAATACA--C-CATCAATAATATTG-TCTCCCAA-----AAGATGAC-ATTGCTT--TTGCATAAACTGTAG-CAGGAGCTTTGGGAACAAA-GTTT--TTTGTATAGGAAAACGTAGTATAA-TT----TTCAGCCCCCGTTTGa
gi|8 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtCCCCTGGGT-AAAATTGAAAG-TTGCAAAACCGTATT----GCTTATC--------ATATTT-CA-ATA-AA-ACCA-ACTGCTGCT-TAAAATAAAATATTGGgcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|11 : ctgtaccattaccaatcatcttccaaaagatgatttggctaatacgaaaaatgtaagaagagtttaaaaaccgtatttctgttgt-TTCCAAAACCTTATC----GCACATC--GAAAGG-TA--C-CA-C--------AA-ACC----------------AT-TTGGCTATACTGTGTAAAATGTAA-GAAGCATTTTGGAAACCAGTA-----TTTGTTTAg
gi|8 : A--C-CA-TTACCA-ATCA-TCTTCCAA-----AAGATGAT-TTGGCTA--ATACGAAAAATGTAAGAAGAG--TTTAAAAACC
gi|14 : ctgtTAA-GATGAGTTCTGGAAACCAA-GAGGGTTTTGTCGAGAACAC------GCCGTTT----TTGA-C-CCCATTTGgtatttctgttgtcccctgggtaaaattgaaagttgcaaaaccgtattgcttatcatatttcaataaaaccaactgctgcttaaaataaaatattggg
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): CTAGGCACTGTCATGCAAGTGTTTGTCTTTATATACATGTACTCTCCATTACACTTGTGTATCTAAACATATTAGCAAAGTGGCCAGAATAGTTGCCATAATAACATACCCTATAC
Unaligned ( gi|13 ): GTAATACAGCAAGCAAGTGTTTGCCTCTATATACTCAATGTCATACTTGAGTAACCAGCAAAGAAGTCACAGTAGTTACCACACA
Unaligned ( gi|15 ): ACAAGTGTACTGTTCGTCATACTTGTGTATCTAGCAGAGATGCCACAATATAGATACCATATGACGTACACTATACC
Unaligned ( gi|16 ): CCTAGAGTAAAAATAAAAATTCGGAAACTGCGAGTCATCACCAATCATCTTTCAAAACTGTG
Alignments
lowQualScore : 11111111111
lowQualScore : 8888888888888888888888888888 1111 33333333333 11 33333 4444444444444444 1 3333 11 111 444444444444 1 666666666666666666 55555555555555555555555555 111 33333333333 33333333 1 1111 44444444 222222 11 222 333333333 1 111 1111 44444444444444444444 11111 2222222222222222 22222222222 2222222 22222 11 66666666666666666666
lowQualScore : 6 1 1 3333333333333333333333333333 2 0 7777 99999999999 0 3 7 6 88 55555 7 1111111111111111 0 5555 33 777 4 2 2 999999999999 0 0 444444444444444444 1 1 66666666666666666666666666 1 3 000 55555555555 66666666 2 2222 88888888 222222 33 000 999999999 6 1 1 1 1 3 5 1 999 1 6 4 7777 88888888888888888888 1 55 11111 1 4444444444444444 1 1 3 1 3 44444444444 55 1 2 777 9999999 4 5 8888 4 0 66 1 4 44444 2 11 22222222222222222222 0 66
lowQualScore : . . . ............................ . . .... ........... . . . . .. ..... . ................ . .... .. ... . . . ............ . . .................. . . .......................... . . ... ........... ........ . .... ........ ...... .. ... ......... . . . . . . . . ... . . . .... .................... . .. ..... . ................ . . . . . ........... .. . . ... ....... . . .... . . .. . . ..... . .. .................... . ..
lowQualScore : 0 0 0 5555555555555555555555555555 5 2 2222 88888888888 2 2 7 7 33 33333 0 0000000000000000 0 0000 88 555 2 0 5 888888888888 2 0 888888888888888888 0 0 77777777777777777777777777 0 7 000 00000000000 00000000 0 7777 33333333 000000 33 333 777777777 7 0 0 0 0 7 3 0 333 0 7 8 7777 99999999999999999999 6 11 11111 0 8888888888888888 0 2 6 0 6 11111111111 00 0 2 000 9999999 0 3 5555 4 8 99 1 0 33333 5 00 55555555555555555555 2 88
consensus : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAA-AC------CCCATTTCATANTTGTTGAAAT--GTAG-TA-GTATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCA-A--TA--TATTCC-T-GTTGCATATATCAAAATGCACTGANTATTCTGATAGGCAAGTGCCCTGGGGTCA-TCATGACCNCC-TC--A-TTTTTTATTGTTCAAGT-C-TTTGAAATGGTTG-AG-TTCCGACCCTTAAAGNAAGTATATTCTTTTTG-ACGCG-TGCAC-ATAACA-ATGCACCGAGCGCCGGGTTTTTCCA--------CCC--TAT-TTGCCC-TCAAGGTGAAAAANGAAAATTCCGAA-ACA-ACCTTATTGCACATCTANAG-ACACCACCGAT--AANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----TTTTCNACCCCCAT--ATTT--G--GCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CA-C-ATNA-ATCGTCTTC----CAAAAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
Reference ( family-896 ) : NNNNCCTATACCATANATATTCTTNCTGCATA--T------------CGAG-A--T-CANGTTGGGCAAGTGCCCTGGGGTCA--CCCAAATACTTGTTGCCCATTTCATAATTGTTGAAAT--GTAGTTATGTATTTAAAACAATTGAG-TT-CTGA-CCC-TAAACCA----TA--TATTCC-T-GCTGCATATATCAAGATGCATTGA--ATTCTG-TAGGCAAGTGCCCTGGGGTCA-TC-TGACCCCC--C--A-TTTTTNATTGTTNAAATNTNTTTGAAACGGTTG-AG-TTTCNACCCTTAAAGCAAGTATATTCTTTTTGCACGTGTTGCAC-ATAACACATGCACCGAGCACCAGGTTTTTCCA--------CCC--TAT-TTGCCCGTCAAGGTGAAAAANGAAAATTCCGAATNNANACCNTANTGCANATNTAGAGTACACCACCGNT--NANATAG-AGGAGTTCCGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----TTTTCNACCCCCAT--ATTT--G--GCCCCCNGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TANAGGACAC---CA-CTATAA-ATCANCTTC----CAAAAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGAAACCAG-G---TTTGTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
gi|1 : CTTATACCATAAACATTCTTGCTTCATA--T------------TGAGTA--T-TATGTTGGGCAAGTGCCCTGGAGTCA--CCCAAA--------ACCAAT---ATACTT----AAATCAGTAG--AGGTATTC---AC----------------CCC-TTAACCA----TA--TATTCC-A-GTTGCATATATCAAGATGCATTGAT-ATTCTGATAAGCTAGTGCCCTGGGGTCA-TCATAACCACC--CTTATTTTTTCATTGTTCAAATACCTTTAAAATGGTTG-AGATTTCTACCCTTAAAGAAAGGAAG---TTTTTG-ACACAATGCACTTTAATA---GCACC--ACAT----TTTTTTCATTGTGTATCCCAATAA-TTGCCCCCAAAGGTGAAAAAC-AAAATTC-----ACAAACCTTATTGAACATCTACAGGACAACACCGAT--CACATAG-AGGAGTTCTGGGAACCAG---GTCTT---T----------------GTAGACAA-ACATTA-----TTTTCGACCCCTATTAATTT--G--ACCCCCTGGGT-AAGAATGAAAA-TTCCGAA-----ACCAT-ATTGCACATC--TACAGGACAC---CA-CTATAA-ATAAACTCCTAATTAAAAGATGATTTGGCCA--CTGTGTAAAATGTAAAAGGGATTTTGGAAACCAG-G---TTTGTATAG--AAAAA-GCA---A------TT----TTGACTCCCATTTG
gi|10 : tttgAAC-ACGTCA-----TTTTATACTTC--T--TTTT--G--GCCCCTAGG-T-AA---TGAAAAGTTCCGAA-----ATC-T--TTGGTCATC--TATAGGATGC---CA-CCA----ATCATATTC----CAAACGATGATTTGGCTA--CTGTG
gi|11 : -TTCCAAA-----ACC-TTATCGCACATC--GAAAGG-TAC---CA-C---AA-ACCA-------------------TTTGGCTATACTGTGTAAAATGTAAGAAGCATTTTGGAAACCAGTA---TTTGTTTAa
gi|12 : TATATAATTTATAGTCTTCCTGCATAGAT------------CGAG-A--TGCA--TTGGGCGAGTGCCCTGGTGTCATTCCCA---AC------CCTATTTCAT
gi|14 : atacatgAG-ATGAGTTCTGGAAACCAAGAGGGTTT---T----------------GTCGAGAACACGCCG-----TTTTTGACCCC-----ATTT--G--G-CCCCAGGAT-GAAAttttg
gi|16 : cataCCTAGAGT-AAAAATAAAAA-TTCGGAA-----AC------TGCGAGTC---AT----CAC---C-------A-ATCATCTTT----CAAAA
gi|2 : TT---T----------------GTCGACAA--CGTCG-----TTTTTCTTTCACAA--ATAT--G--CTCCCCAGGAT-GTAAATGAAAG-TCGTGAA-----AACAC-ATTGCACGTC--TACAGGACGTGTACA-CAACCA-ACCTTCTTC----CGAAAGCTGATTTGACTG--CTGTGTTAGATGTGAGAGGAGTTCAAGGAACTTT-T---TTTTTAAAG--AAAAA---A---A------TCGTTATCGACCCC--TTTGctgtg
gi|2 : AG-AGGAGTTCAAGGAACTTT---TTTTT---T----------------AAAGAAAA-AAATCG-----TTATCGACCCCTTT--G-TT--G----TCTCTGGGT-GAAAATAAAAA-TTCTGAA-----ACCAT-ATTGCAAATA--TAGAGACTAC---TG-CT-TAA-Attgtctctgggtgaaaataaaaattctgaaaccatattgcaaatatagagactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|2 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtg--------CCC--TTTGTTGTC--TCTGGGTGAAAA-TAAAAATTCTGAA-----ACCATATTGCAAATATAGAG---ACTACTGCTTAAAAATGT-AAAAGTTCTGGGTACCA-------TT---TGGGGGGGGGGGGGGGGGTTGGAAA-ACATCG-----TTTTTTACCCTCAT--A-----------CATATAGT-AAAATTGAAAA-CTACGCA-----ACCTT-ATTGCACATC--TGTTGGACaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgagaggagttcaaggaactttttttttaaagaaaaaaatcgttatcgacGGAGTCG-TCATGACCCCTTTC--A-TTTTTAGTTGTTCA---------------------------GACCCTTCAAGTAAATATATTTTT---------GTTGCAC-ATAACACATGCACCGAGCACCAGGTTTTTCCA--------CCC--TAT-TTGCCCGTCAAGGTGAAAAAAGAAAATTCCGAATACATA-CTTAATACACATCTAAAATACACCATCAAT--AATATtcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : c-----TTTTCCACCC---T--ATTT--G--CCCGTCAAGGTGAAAAAAGAAAA-TTCCGAATACATACT-T-AATACACATC--TAAAATACAC---CATCAATAATATTGTCTCC----CAAAAGATGACATTGCTT--TTGCATAAACTGTAGCAGGAGCTTTGGGAACAAA-GTTTTTTGTATAG--GAAAACGTA---GTATAATTT----TCAGCCCCCGTTTGtgtctcccaaaagatgacattgcttttgcataaactgtagcaggagctttgggaacaaagttttttgtataggaaaacgtagtataattttcagcccccgtttggcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|3 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtTAGCAGGAGCTTTGGGAACAAA---GTTTTTTGT----------------ATAGGAAA-ACGTAGTATAATTTTCAGCCCCC----GTTT--G--GCACTCTGATT-AAAGCTG-AAA-TTACAGA-----AC----ATTGCACTTCTATACAGGACAC---C----ATCA-ATTGTCTAC----CGAAAG-TGATTgcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|4 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtttttccaccctatttgcccgtcaaggtgaaaaaagaaaattccgaatacatacttaatacacatctaaaatacaccatcaataatattgtctcccaaaagatgacattgcttttgcataaactgTGTACCATACATATTCTTCCTGCATA--TGTCAAGTTGCATTGAG-AATT-C-TGTAGGGCAAGTGCCCTAGGGTC-----CA--TAC------CCCATTTCATATTTGTTGCAAT--ATA--TATGTATTTGAAACAATTGAG-TT-T------C-TAAACCA----TA--CATACTGTAGCTGCACATATCAAAATGCACTGAATATTCTGATGGGCAAGTGTCCTGGG
gi|5 : gtaccatctgcaacattaaacactagatgctgtcataagacagcactttagtgtttgcctttagatatattctccaatgtgcaaagaagccacaatagttaccagataacataccatatacaTTC----CAAGAGATGA---GA--A--CT-----ATATGTAAAAGGAGTTCCGGGAGCCAA-G---TTTTTTTTGTAGAAAA-CCATTGT------TT----TCTACCTCCATCTGa
gi|5 : atctgtaacaagggtAA-AGGAGTTCCGGGAGCCAA---GTTTT---TTTT-------------GTAGAAAA-CCATTG-----TTTTCTACCTCCAT----CT--G--GTCCCCAGAAT-AAAAATAAAAA-TTCCAAA-------------------TC--TACAGGGTAC---CA----TCA-GTTATCTTC----CAAAAGCTGAGTTGGTCA--TCGCATAAAAGGGATGAAGAACTCTCCAAATCAG-GCC-TTTTAATAG--GAAAA-gtccccagaataaaaataaaaattccaaatctacagggtaccatcagttatcttccaaaagctgagttggtcatcgcataaaagggatgaagaactctccaaatcaggccttttaataggaaaaaaaaaatcgtcgttttgttg
gi|6 : atctgtaacaagggtttccaagagatgagaactatatgtaCTTATTCCACATTTATTGTTGCTGTATA--T-----------------G--T-CAAGCTG--CAAGTGCCCTGCGGTTA--TCTAAA-AC------CCCATTTCATAATTGTTGAAAT--GTAGTT------TTAAAAC--TTGAG-TTTCTGA-CCCCTAAACCACATATA--TATTCC-T-GATGCATATATCAAAATACATTGAGTATTCTGACAGGTAAGTGTCCTGGGGTCATTC-TGGCCTCCATC--A-TATTTTATTaaaaaatcgtcgttttgttg
gi|7 : acAAAACAATTGAGGTT-CTGAACCC-TAAACCAAA--TAAATATTCC-T-GTTTCCTATATCAAAATGCACT----------------AAGTGCCCTGGGGTTA-TC------------------TTTTATTGTTGAAGTTTGTTTGAAATGGTTGAAA-TTCCAACCCTTAGAGCAAGTATATTCTTTTTGCACGTG--GCAC-A------ATGCACCAAGCGCCGGAATTTTttc
gi|8 : AC---CA-TTACCA-ATCATCTTC----CAAAAGATGATTTGGCTA--ATACGAAAAATGTAAGAAGAGTT-TAAAAACCgtta
gi|8 : ctgtCCGT--ATTTCTGTTGTCCCCTGGGT-AAAATTGAAAG-TTGCAAA-----ACCGT-ATTGCTTATC--gtatttctgttgtcccctgggtaaaattgaaagttgcaaaaccgtattgcttatcatatttcaataaaaccaactgctgcttaaaataaaatattggg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTAGGCACTGTCATGCAAGTGTTTGTCTTTATATACATGTACTCTCCATTACACTTGTGTATCTAAACATATTAGCAAAGTGGCCAGAATAGTTGCCATAATAACATACCCTATAC
Unaligned ( gi|13 ): GTAATACAGCAAGCAAGTGTTTGCCTCTATATACTCAATGTCATACTTGAGTAACCAGCAAAGAAGTCACAGTAGTTACCACACA
Unaligned ( gi|15 ): ACAAGTGTACTGTTCGTCATACTTGTGTATCTAGCAGAGATGCCACAATATAGATACCATATGACGTACACTATACC
Alignments
lowQualScore : 7777777777777777777777777 1111 11 3333 11 4444444444444444 1 44444 11 1 2222222 1 77777777777777777777777777777 1 66666666666666 22 1111 44444444 22222 2222 1 222 22222222222 2 1 1111 44444444444444444444 11111 22222 22222222222 222222 222222 11 66666666666666666666
lowQualScore : 1 1 5555555555555555555555555 4444 2 0 7777 66 3 6 3 1 2 88 2222 22 1111111111111111 0 00000 33 4 1 2 4 111 0 9 11 8888888 3 0 2 33333333333333333333333333333 1 2 44444444444444 00 88 0 2222 88888888 11111 1111 3 000 99999999999 1 6 3 3 7 1 6 7777 88888888888888888888 1 55 11111 1 44444 9999999 2 1 3 1 3 44444444444 0 55 0 1 8888 999999 4 7 8888 4 0 66 1 4 333333 1 0 11 22222222222222222222 0 66
lowQualScore : . . ......................... .... . . .... .. . . . . . .. .... .. ................ . ..... .. . . . . ... . . .. ....... . . . ............................. . . .............. .. .. . .... ........ ..... .... . ... ........... . . . . . . . .... .................... . .. ..... . ..... ....... . . . . . ........... . .. . . .... ...... . . .... . . .. . . ...... . . .. .................... . ..
lowQualScore : 2 0 5555555555555555555555555 0000 5 2 2222 88 2 5 2 0 5 33 0000 77 0000000000000000 0 88888 88 0 2 5 2 888 2 2 00 2222222 5 0 5 00000000000000000000000000000 0 0 77777777777777 77 00 7 3333 33333333 33333 7777 3 333 77777777777 0 7 3 7 3 0 7 7777 99999999999999999999 6 11 11111 0 11111 0000000 5 2 6 0 6 11111111111 1 00 7 0 9999 000000 4 2 5555 4 8 99 1 0 444444 0 6 00 55555555555555555555 2 88
consensus : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGTG-GTATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCAC--A-TA--TATTCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTG-CACG-TGCGC-T-AACA-ATGCACCGAGCGCCGGGTTTTTCCA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-ACAA--CTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----TTTTCNACCCCC-T--ATTT--G--GCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC--A-TCA-ATCGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
Reference ( family-896 ) : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATANTTGTTGAAAT--GTAGTA-GTATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCA---A-TA--TATTCCTGTTGCATATATCAAAATGCACTGANTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAG-TTCCGACCCTTAAAGNAAGTATATTCTTTTTGACGCG-TGCACAT-AACA-ATGCACCGAGCGCCGGGTTTTTCCA--------CCCTAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-ACAA-CCTTATTGCACATCTANAG-AC-ACCACCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----TTTTCNACCCCCAT--ATTT--G--GCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC--A-TNA-ATCGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
gi|1 : CTTATACCATAAACATTCTTGCTTCATA--T------------TGAGTA--T-TATGTTGGGCAAGTGCCCTGGAGTCA--CCCAAAACCA-AT---ATACTT----AAATCAGTAGAG-GTATTC---AC----------------CCC-TTAACCA-----TA--TATTCCAGTTGCATATATCAAGATGCATTGA-TATTCTGATAAGCTAGTGCCCTGGGGTCATCATAACCACCCT-TATTTTTTCATTGTTCAAATACCT--TTAAAATGGTTGAGATTTCTACCCTTAAAGAAAGGAAGTT---TTTGACACAATGCACTTTAATA---GCACCA--CAT----TTTTTTCATTGTGTATCCCAATAATTGCC--C-CCAAAGGTGAAAAAC-AAAATTC-----ACAAACCTTATTGAACATCTACAGGAC-AACACCGATCACATAG-AGGAGTTCTGGGAACCAG---GTCTT---T----------------GTAGACAA-ACATTA-----TTTTCGACCCCTATTAATTT--G--ACCCCCTGGGT-AAGAATGAAAA-TTCCGAA-----ACCAT-ATTGCACATC--TACAGGACAC---CACT-A-TAA-ATAAACTCCTAATTAAAAGATGATTTGGCCA--CTGTGTAAAATGTAAAAGGGATTTTGGAAACCAG-G---TTTGTATAG--AAAAA-GCA---A------TT----TTGACTCCCATTTG
gi|10 : tttgAAC-ACGTCA-----TTTTATACTTC--T--TTTT--G--GCCCCTAGG-T-AA---TGAAAAGTTCCGAA-----ATC-T--TTGGTCATC--TATAGGATGC---CAC-----CA-ATCATATTCCAA----ACGATGATTTGGCTA--CTGTG
gi|11 : -TTCCAAA-----ACC-TTATCGCACATC--GAAAGG-TAC---CAC--A---A-ACC-------------------ATTTGGCTATACTGTGTAAAATGTAAGAAGCATTTTGGAAACCAGTA---TTTGTTTAa
gi|12 : TATATAATTTATAGTCTTCCTGCATAGAT------------CGAG-A--TGCAT--TGGGCGAGTGCCCTGGTGTCATTCCC--AACCCTATTTCATTTTTG
gi|14 : atacatgAG-ATGAGTTCTGGAAACCAAGAGGGTTT---T----------------GTCGAGAACACGCCG-----TTTTTGACCCC-----ATTT--G--G-CCCCAGGAT-GAAA
gi|16 : cataCCTAGAGT-AAAAATAAAAA-TTCGGAA-----A--------------C--TGCGAGTCAT---CAC-----CA-ATCATCTTTCAA----AA
gi|2 : TT---T----------------GTCGACAA--CGTCG-----TTTTTCTTTCACAA--ATAT--G--CTCCCCAGGAT-GTAAATGAAAG-TCGTGAA-----AACAC-ATTGCACGTC--TACAGGACGTGTACAC--AACCA-ACCTTCTTCCGA----AAGCTGATTTGACTG--CTGTGTTAGATGTGAGAGGAGTTCAAGGAACTTT-T---TTTTTAAAG--AAAAA---A---A------TCGTTATCGACCCC--TTTGctgtg
gi|2 : AG-AGGAGTTCAAGGAACTTT---TTTTT---T----------------AAAGAAAA-AAATCG-----TTATCGACCCCTTT--GTT------GTCTCT-GGGT-GAAAATAAAAA-TTCTGAA-----ACCAT-ATTGCAAATA--TAGAGttgtctctgggtgaaaataaaaattctgaaaccatattgcaaatatagagactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|2 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgTTATCGA--------CCCC-T--TTGTTGTC-TCTG-GGTGAAAA-TAAAAATTCTGAA-ACCA----TATTGCAAATATAGAG-ACTACTGCTTA-AAAATGT-AAAAGTTCTGGGTACCA-------TT---TGGGGGGGGGGGGGGGGGTTGGAAA-ACATCG-----TTTTTTACCCTCAT--A-----------CATATAGT-AAAATTGAAAA-CTACGCA-----ACCTT-ATTGCACATC--TGTTGGACactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgagaggagttcaaggaactttttttttaaagaaaaaaatcgGGAGTCGTCATGACCCCT-TTCATTTTTA-GTTGTTCA----------------------------GACCCTTCAAGTAAATATATTTTTGTTG--------CACAT-AACACATGCACCGAGCACCAGGTTTTTCCA--------CCCTAT--TTGCC--CGTCAA-GGTGAAAAAAGAAAATTCCGAATACAT-ACTTAATACACATCTAAAATAC-ACCATCAATAATATtcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : c-----TTTTCCACCC---T--ATTT--G--CCCGTCAAGGTGAAAAAAGAAAA-TTCCGAATACATACT-T-AATACACATC--TAAAATACAC---CATCAA-TAATATTGTCTCCCAA----AAGATGACATTGCTT--TTGCATAAACTGTAGCAGGAGCTTTGGGAACAAA-GTTTTTTGTATAG--GAAAACGTA---GTATAATTT----TCAGCCCCCGTTTGtgtctcccaaaagatgacattgcttttgcataaactgtagcaggagctttgggaacaaagttttttgtataggaaaacgtagtataattttcagcccccgtttggcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|3 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtTAGCAGGAGCTTTGGGAACAAA---GTTTTTTGT----------------ATAGGAAA-ACGTAGTATAATTTTCAGCCCCC----GTTT--G--GCACTCTGATT-AAAGCTG-AAA-TTACAGA-----AC----ATTGCACTTCTATACAGGACAC-----C--A-TCA-ATTGTCTACCGA----AAG-TGATTgcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|4 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtttttccaccctatttgcccgtcaaggtgaaaaaagaaaattccgaatacatacttaatacacatctaaaatacaccatcaataatattgtctcccaaaagatgacattgcttttgcataaactgTGTACCATACATATTCTTCCTGCATA--TGTCAAGTTGCATTGAG-AATT-C-TGTAGGGCAAGTGCCCTAGGGTC-----CATA-CCCCATTTCATATTTGTTGCAAT--ATA-TATGTATTTGAAACAATTGAG-TT-T------C-TAAACCAT--A-CA--TACTGTAGCTGCACATATCAAAATGCACTGAATATTCTGATGGGCAAGTGTCCTGGG
gi|5 : gtaccatctgcaacattaaacactagatgctgtcataagacagcactttagtgtttgcctttagatatattctccaatgtgcaaagaagccacaatagttaccagataacataccatatacaTTCCAA----GAGATGA---GA--A--CT-----ATATGTAAAAGGAGTTCCGGGAGCCAA-G---TTTTTTTTGTAGAAAA-CCATTGT------TT----TCTACCTCCATCTGa
gi|5 : atctgtaacaagggtAA-AGGAGTTCCGGGAGCCAA---GTTTTTTTT----------------GTAGAAAA-CCATTG-----TTTTCTACCTCC----ATCT--G--GTCCCCAGAAT-AAAAATAAAAA-TTCCAA-------------------ATC--TACAGGGTAC-----C--A-TCA-GTTATCTTCCAA----AAGCTGAGTTGGTCA--TCGCATAAAAGGGATGAAGAACTCTCCAAATCAG-GCC-TTTTAATAG--GAAAA-gtccccagaataaaaataaaaattccaaatctacagggtaccatcagttatcttccaaaagctgagttggtcatcgcataaaagggatgaagaactctccaaatcaggccttttaataggaaaaaaaaaatcgtcgttttgttg
gi|6 : atctgtaacaagggtttccaagagatgagaactatatgtaCTTATTCCACATTTATTGTTGCTGTATA--T-----------------G--T-CAAGCTG--CAAGTGCCCTGCGGTTA--TCTAAAACCCCATTTCATAATTGTTGAAAT--GTAGT-----TTTAAAAC--TTGAG-TTTCTGA-CCCCTAAACCACATA-TA--TATTCCTGATGCATATATCAAAATACATTGAGTATTCTGACAGGTAAGTGTCCTGGGGTCATTCTGGCCTCCAT-CATATTTT-ATT-TTCaaaaaatcgtcgttttgttg
gi|7 : acAAACAATTGAGGTT-CTGAACCC-TAAACCA---AATAAATATTCCTGTTTCCTATATCAAAATGCACT----------------AAGTGCCCTGGGGTTATC----------------TTTT-ATTGTTGAAGT--TTGTTTGAAATGGTTGAAATTCCAACCCTTAGAGCAAGTATATTCTTTTTG-CACG-TG-GC----ACA-ATGCACCAAGCGCCGGAATTTT
gi|8 : aAC---CATT-A-CCA-ATCATCTTCCAA----AAGATGATTTGGCTA--ATACGAAAAATGTAAGAAGAGTT-TAAAAACCGT-A---TTTCTGTgtta
gi|8 : ctgtCCGT--ATTTCTGTTGTCCCCTGGGT-AAAATTGAAAG-TTGCAAA-----ACCGT-ATTGCTTATC--tgtcccctgggtaaaattgaaagttgcaaaaccgtattgcttatcatatttcaataaaaccaactgctgcttaaaataaaatattggg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTAGGCACTGTCATGCAAGTGTTTGTCTTTATATACATGTACTCTCCATTACACTTGTGTATCTAAACATATTAGCAAAGTGGCCAGAATAGTTGCCATAATAACATACCCTATAC
Unaligned ( gi|13 ): GTAATACAGCAAGCAAGTGTTTGCCTCTATATACTCAATGTCATACTTGAGTAACCAGCAAAGAAGTCACAGTAGTTACCACACA
Unaligned ( gi|15 ): ACAAGTGTACTGTTCGTCATACTTGTGTATCTAGCAGAGATGCCACAATATAGATACCATATGACGTACACTATACC
Alignments
lowQualScore : 7777777777777777777777777 1111 11 22 11 4444444444444444 1 1 11 11 1 2222222 1 555555555555 1 99999999 1 33333 55555555555 11 2222 1 222 1 3333 2 1 1111 44444444444444444444 11111 222222 22222222222 2222222222 1111111 222222 11 66666666666666666666
lowQualScore : 1 1 5555555555555555555555555 4444 2 0 7777 66 3 6 3 1 2 88 33 22 1111111111111111 0 2 33 33 1 1 2 2 111 0 9 11 8888888 3 0 2 111111111111 6666666 1 2 6 33333333 3 22222 0 0 0 11111111111 88 88 1111 3 000 3 3 4444 1 6 3 0 3 7 1 6 7777 88888888888888888888 1 4 2 00000 4 4 4 888888 33 0 1 3 1 3 66666666666 0 55 0 1 8888888888 7777777 7777 3 2 66 4 333333 1 0 11 22222222222222222222 0 66
lowQualScore : . . ......................... .... . . .... .. . . . . . .. .. .. ................ . . .. .. . . . . ... . . .. ....... . . . ............ ....... . . . ........ . ..... . . . ........... .. .. .... . ... . . .... . . . . . . . . .... .................... . . . ..... . . . ...... .. . . . . . ........... . .. . . .......... ....... .... . . .. . ...... . . .. .................... . ..
lowQualScore : 2 0 5555555555555555555555555 0000 5 2 2222 88 2 5 2 2 5 33 33 77 0000000000000000 0 8 88 88 0 2 5 8 888 2 2 00 2222222 5 0 5 000000000000 3333333 0 0 7 00000000 3 00000 7 7 7 00000000000 33 33 7777 3 333 7 3 3333 0 7 3 7 7 3 0 7 7777 99999999999999999999 6 4 7 00000 0 0 9 111111 99 3 2 6 0 6 44444444444 1 00 7 0 1111111111 8888888 7777 1 4 11 2 444444 0 6 00 55555555555555555555 2 88
consensus : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-GTATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT------ACA-ATGCACCG----AGCGCCGGATTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-AC--ACTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCC--TA-TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC-A-TCAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
Reference ( family-896 ) : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGTGGTATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCACATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGTGCGCTAACA-ATGCACCG----AGCGCCGGGTTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-ACA-ACTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCC--TA-TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC-A-TCAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
gi|1 : CTTATACCATAAACATTCTTGCTTCATA--T------------TGAGTA--T-TATGTTGGGCAAGTGCCCTGGAGTCA--CCCAAAACCA-AT---ATACTT----AAATCAGTAGAGGTATTC---AC----------------CCC-TTAACCA--TA--TAT--TCCAGTTGCATATATCAAGATGCATTGA-TATTCTGATAAGCTAGTGCCCTGGGGTCATCATAACCACCCT-TATTTTTTCATTGTTCAAATACCT--TTAAAATGGTTGAGATTTCTACCCTTAAAGAAAGGAAGTT---TTTG-AC--------ACA-ATGCACTTTAATAGCACCACATTTTTTTCATTGTGTATCCCAATAATTGCC--C-CCAAAGGTGAAAAAC-AAAATTCACAA-AC---CTTATTGAACATCTACAGGAC-AACACCGATCACATAG-AGGAGTTCTGGGAACCAG---GTCTT---T----------------GTAGACAA-ACATTA-----T-TTT-CGACCCCTATTAATTTGACCCCCTGGGT-AAGAATGAAAA-TTCCGAA-----ACCAT-ATTGCACATC--TACAGGACAC---CACTA-TAAAT-----AAACTCCTAATTAAAAGATGATTTGGCCA--CTGTGTAAAATGTAAAAGGGATTTTGGAAACCAG-G---TTTGTATAG--AAAAA-GCA---A------TT----TTGACTCCCATTTG
gi|10 : tttgAAC-ACGTCA-----T-TTT-ATACTTCT--T--TTTGGCCCCTAGG-T-AA---TGAAAAGTTCCGAA-----ATC-T--TTGGTCATC--TATAGGATGC---CAC----CAAT-----CATATTCCAA----ACGATGATTTGGCTA--CTGTG
gi|11 : -TTCCAAA-----ACC-TTATCGCACATC--GAAAGG-TAC---CAC-A---AAC-----C-------------------ATTTGGCTATACTGTGTAAAATGTAAGAAGCATTTTGGAAACCAGTA---TTTGTTTAa
gi|12 : TATATAATTTATAGTCTTCCTGCATAGAT------------CGAG-A--TGCAT--TGGGCGAGTGCCCTGGTGTCATTCCC--AACCCTATTTCATTTTTG
gi|14 : atacatgAG-ATGAGTTCTGGAAACCAAGAGGGTTT---T----------------GTCGAGAACACGCCG-----T-TTT-TGACCCC----A-TTTGG-CCCCAGGAT-GAAA
gi|16 : cataCCTAGAGT-AAAAATAAAAA-TTCGGAA-----A--------------C--TGCGAGTCAT---CAC----CAAT-----CATCTTTCAA----AA
gi|2 : TT---T----------------GTCGACAA--CGTCG-----T-TTTTCTTTCACA--AA-TATGCTCCCCAGGAT-GTAAATGAAAG-TCGTGAA-----AACAC-ATTGCACGTC--TACAGGACGTGTACAC-AACCAAC-----CTTCTTCCGA----AAGCTGATTTGACTG--CTGTGTTAGATGTGAGAGGAGTTCAAGGAACTTT-T---TTTTTAAAG--AAAAA---A---A------TCGTTATCGACCCC--TTTGctgtg
gi|2 : AG-AGGAGTTCAAGGAACTTT---TTTTT---T----------------AAAGAAAA-AAATCG-----T-TAT-CGACCCCT--TT-GTTGTCTCT--GGGT-GAAAATAAAAA-TTCTGAA-----ACCAT-ATTGCAAATA--TAGAGttgtctctgggtgaaaataaaaattctgaaaccatattgcaaatatagagactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|2 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgTTATC-GA--------CCCC-T--TTGTTGTC-TCTG-GGTGAAAA-TAAAAATTCTGAA-ACC-A--TATTGCAAATATAGAG-ACTACTGCTTA-AAAATGT-AAAAGTTCTGGGTACCA-------TT---TGGGGGGGGGGGGGGGGGTTGGAAA-ACATCG-----T-TTT-TTACCCTCA-TA--------CATATAGT-AAAATTGAAAA-CTACGCA-----ACCTT-ATTGCACATC--TGTTGGAC-----------TCA-----------TTC-------AAGACTAATTGATTG--CAGCTTACAATAAAAGTGGAATTTGAGGAactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgagaggagttcaaggaactttttttttaaagaaaaaaatcgGGAGTCGTCATGACCCCT-TTCATTTTTA-GTTGTTCA----------------------------GACCCTTCAAGTAAATATATTTTTGTTGCACAT-----AACACATGCACCG----AGCACCAGGTTTTTC-CA--------CCCTAT--TTGCC--CGTCAA-GGTGAAAAAAGAAAATTCCGAATACATACTTAATACACATCTAAAATAC-ACCATCAATAATATggaaaaaagtatgagagacg
gi|3 : c-----T-TTT-CCACCC----TA-TTTGCCCGTCAAGGTGAAAAAAGAAAA-TTCCGAATACATACT-T-AATACACATC--TAAAATACAC---CA----TCAATAATATTGTCTCCCAA----AAGATGACATTGCTT--TTGCATAAACTGTAGCAGGAGCTTTGGGAACAAA-GTTTTTTGTATAG--GAAAACGTA---GTATAATTT----TCAGCCCCCGTTTGtgtctcccaaaagatgacattgcttttgcataaactgtagcaggagctttgggaacaaagttttttgtataggaaaacgtagtataattttcagcccccgtttggcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|3 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtTAGCAGGAGCTTTGGGAACAAA---GTTTTTTGT----------------ATAGGAAA-ACGTAGTATAAT-TTT-CAGCCCCC---G-TTTGGCACTCTGATT-AAAGCTG-AAA-TTACAGA-----AC----ATTGCACTTCTATACAGGACAC-----C-A-TCAAT-----TGTCTACCGA----AAG-TGATTgcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|4 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtttttccaccctatttgcccgtcaaggtgaaaaaagaaaattccgaatacatacttaatacacatctaaaatacaccatcaataatattgtctcccaaaagatgacattgcttttgcataaactgTGTACCATACATATTCTTCCTGCATA--TGTCAAGTTGCATTGAG-AATT-C-TGTAGGGCAAGTGCCCTAGGGTC-----CATA-CCCCATTTCATATTTGTTGCAAT--ATATATGTATTTGAAACAATTGAG-TT-T------C-TAAACCATACA--TAC--TGTAGCTGCACATATCAAAATGCACTGAATATTCTGATGGGCAAGTGTCCTGGG
gi|5 : gtaccatctgcaacattaaacactagatgctgtcataagacagcactttagtgtttgcctttagatatattctccaatgtgcaaagaagccacaatagttaccagataacataccatatacaTTCCAA----GAGATGA---GA--A--CT-----ATATGTAAAAGGAGTTCCGGGAGCCAA-G---TTTTTTTTGTAGAAAA-CCATTGT------TT----TCTACCTCCATCTGa
gi|5 : atctgtaacaagggtAA-AGGAGTTCCGGGAGCCAA---GTTTT---TTTT-------------GTAGAAAA-CCATTG-----T-TTT-CTACCTCC---A-TCTGGTCCCCAGAAT-AAAAATAAAAA-TTCCAAA-------------------TC--TACAGGGTAC---CA----TCAGT-----TATCTTCCAA----AAGCTGAGTTGGTCA--TCGCATAAAAGGGATGAAGAACTCTCCAAATCAG-GCC-TTTTAATAG--GAAAA-gtccccagaataaaaataaaaattccaaatctacagggtaccatcagttatcttccaaaagctgagttggtcatcgcataaaagggatgaagaactctccaaatcaggccttttaataggaaaaaaaaaatcgtcgttttgttg
gi|6 : atctgtaacaagggtttccaagagatgagaactatatgtaCTTATTCCACATTTATTGTTGCTGTATA--T-----------------G--T-CAAGCTG--CAAGTGCCCTGCGGTTA--TCTAAAACCCCATTTCATAATTGTTGAAAT--GTAGT----TTTAAAAC--TTGAG-TTTCTGA-CCCCTAAACCACATA--TATATTCCTGATGCATATATCAAAATACATTGAGTATTCTGACAGGTAAGTGTCCTGGGGTCATTCTGGCCTCCAT-CATATTTT-ATT-TTCaaaaaatcgtcgttttgttg
gi|7 : acAAACAATTGAGGTT-CTGAACCC-TAAACCAAATAAATAT--TCCTGTTTCCTATATCAAAATGCACT----------------AAGTGCCCTGGGGTTATC----------------TTTT-ATTGTTGAAGT--TTGTTTGAAATGGTTGAAATTCCAACCCTTAGAGCAAGTATATTCTTTTTGCACGTG-GC--ACA-ATGCACCA----AGCGCCGGAATTTT
gi|8 : aAC---CATTA-CCAAT-----CATCTTCCAA----AAGATGATTTGGCTA--ATACGAAAAATGTAAGAAGAGTT-TAAAAACCGT-A---TTTCTGTgtta
gi|8 : ctgtAAAA-AC--CG-----TATTT-C---------TG-TT--GTCCCCTGGGT-AAAATTGAAAG-TTGCAAA-----ACCGT-ATTGCTTATC--tgtcccctgggtaaaattgaaagttgcaaaaccgtattgcttatcatatttcaataaaaccaactgctgcttaaaataaaatattggg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTAGGCACTGTCATGCAAGTGTTTGTCTTTATATACATGTACTCTCCATTACACTTGTGTATCTAAACATATTAGCAAAGTGGCCAGAATAGTTGCCATAATAACATACCCTATAC
Unaligned ( gi|13 ): GTAATACAGCAAGCAAGTGTTTGCCTCTATATACTCAATGTCATACTTGAGTAACCAGCAAAGAAGTCACAGTAGTTACCACACA
Unaligned ( gi|15 ): ACAAGTGTACTGTTCGTCATACTTGTGTATCTAGCAGAGATGCCACAATATAGATACCATATGACGTACACTATACC
Alignments
lowQualScore : 7777777777777777777777777 1111 11 444444444444444444444444444444 1 1 11 11 1 2222222 1 555555555555 1 3333333 1 33333 55555555555 11 2222 1 222 333333 2 1 1111 44444444444444444444 11111 222222 22222222222 2222222222 1111111 222222 11 66666666666666666666
lowQualScore : 1 1 5555555555555555555555555 4444 2 0 7777 66 3 6 3 1 2 88 111111111111111111111111111111 0 0 33 33 1 1 2 2 111 0 9 11 8888888 3 0 2 111111111111 6666666 1 2 6 8888888 3 22222 0 0 11111111111 88 88 1111 3 000 3 333333 1 6 3 0 3 7 1 6 7777 88888888888888888888 1 4 2 00000 4 4 4 888888 33 0 1 3 1 3 66666666666 0 55 0 1 8888888888 7777777 7777 3 2 66 4 333333 1 0 11 22222222222222222222 0 66
lowQualScore : . . ......................... .... . . .... .. . . . . . .. .............................. . . .. .. . . . . ... . . .. ....... . . . ............ ....... . . . ....... . ..... . . ........... .. .. .... . ... . ...... . . . . . . . . .... .................... . . . ..... . . . ...... .. . . . . . ........... . .. . . .......... ....... .... . . .. . ...... . . .. .................... . ..
lowQualScore : 2 0 5555555555555555555555555 0000 5 2 2222 88 2 5 2 2 5 33 333333333333333333333333333333 0 8 88 88 0 2 5 8 888 2 2 00 2222222 5 0 5 000000000000 3333333 0 0 7 7777777 3 00000 7 7 00000000000 33 33 7777 3 333 7 333333 0 7 3 7 7 3 0 7 7777 99999999999999999999 6 4 7 00000 0 0 9 111111 99 3 2 6 0 6 44444444444 1 00 7 0 1111111111 8888888 7777 1 4 11 2 444444 0 6 00 55555555555555555555 2 88
consensus : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-G-TATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACCG----AGCGCCGGATTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA---AC-CTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCC--TA-TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC-A-TCAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
Reference ( family-896 ) : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-G-TATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACCG----AGCGCCGGATTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA---ACACTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCC--TA-TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC-A-TCAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
gi|1 : CTTATACCATAAACATTCTTGCTTCATA--T------------TGAGTA--T-TATGTTGGGCAAGTGCCCTGGAGTCA--CCCAAAACCA-AT---ATACTT----AAATCAGTAGA-GGTATTC---AC----------------CCC-TTAACCA--TA--TAT--TCCAGTTGCATATATCAAGATGCATTGA-TATTCTGATAAGCTAGTGCCCTGGGGTCATCATAACCACCCT-TATTTTTTCATTGTTCAAATACCT--TTAAAATGGTTGAGATTTCTACCCTTAAAGAAAGGAAGTT---TTTG-AC-----A-CA-ATGCACTTTAATAGCACCACATTTTTTTCATTGTGTATCCCAATAATTGCC--C-CCAAAGGTGAAAAAC-AAAATTCACAA---AC-CTTATTGAACATCTACAGGAC-AACACCGATCACATAG-AGGAGTTCTGGGAACCAG---GTCTT---T----------------GTAGACAA-ACATTA-----T-TTT-CGACCCCTATTAATTTGACCCCCTGGGT-AAGAATGAAAA-TTCCGAA-----ACCAT-ATTGCACATC--TACAGGACAC---CACTA-TAAAT-----AAACTCCTAATTAAAAGATGATTTGGCCA--CTGTGTAAAATGTAAAAGGGATTTTGGAAACCAG-G---TTTGTATAG--AAAAA-GCA---A------TT----TTGACTCCCATTTG
gi|10 : tttgAAC-ACGTCA-----T-TTT-ATACTTCT--T--TTTGGCCCCTAGG-T-AA---TGAAAAGTTCCGAA-----ATC-T--TTGGTCATC--TATAGGATGC---CAC----CAAT-----CATATTCCAA----ACGATGATTTGGCTA--CTGTG
gi|11 : -TTCCAAA-----ACC-TTATCGCACATC--GAAAGG-TAC---CAC-A---AAC-----C-------------------ATTTGGCTATACTGTGTAAAATGTAAGAAGCATTTTGGAAACCAGTA---TTTGTTTAa
gi|12 : TATATAATTTATAGTCTTCCTGCATAGAT------------CGAG-A--TGCAT--TGGGCGAGTGCCCTGGTGTCATTCCC--AACCCTATTTCATTTTTG
gi|14 : atacatgAG-ATGAGTTCTGGAAACCAAGAGGGTTT---T----------------GTCGAGAACACGCCG-----T-TTT-TGACCCC----A-TTTGG-CCCCAGGAT-GAAA
gi|16 : cataCCTAGAGT-AAAAATAAAAA-TTCGGAA-----A--------------C--TGCGAGTCAT---CAC----CAAT-----CATCTTTCAA----AA
gi|2 : TT---T----------------GTCGACAA--CGTCG-----T-TTTTCTTTCACA--AA-TATGCTCCCCAGGAT-GTAAATGAAAG-TCGTGAA-----AACAC-ATTGCACGTC--TACAGGACGTGTACAC-AACCAAC-----CTTCTTCCGA----AAGCTGATTTGACTG--CTGTGTTAGATGTGAGAGGAGTTCAAGGAACTTT-T---TTTTTAAAG--AAAAA---A---A------TCGTTATCGACCCC--TTTGctgtg
gi|2 : AG-AGGAGTTCAAGGAACTTT---TTTTT---T----------------AAAGAAAA-AAATCG-----T-TAT-CGACCCCT--TT-GTTGTCTCT--GGGT-GAAAATAAAAA-TTCTGAA-----ACCAT-ATTGCAAATA--TAGAGttgtctctgggtgaaaataaaaattctgaaaccatattgcaaatatagagactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|2 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgTTATC-GA--------CCCC-T--TTGTTGTC-TCTG-GGTGAAAA-TAAAAATTCTGAA---AC-CATATTGCAAATATAGAG-ACTACTGCTTA-AAAATGT-AAAAGTTCTGGGTACCA-------TT---TGGGGGGGGGGGGGGGGGTTGGAAA-ACATCG-----T-TTT-TTACCCTCA-TA--------CATATAGT-AAAATTGAAAA-CTACGCA-----ACCTT-ATTGCACATC--TGTTGGAC-----------TCA-----------TTC-------AAGACTAATTGATTG--CAGCTTACAATAAAAGTGGAATTTGAGGAactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgagaggagttcaaggaactttttttttaaagaaaaaaatcgGGAGTCGTCATGACCCCT-TTCATTTTTA-GTTGTTCA----------------------------GACCCTTCAAGTAAATATATTTTTGTTGCACAT---AACACATGCACCG----AGCACCAGGTTTTTC-CA--------CCCTAT--TTGCC--CGTCAA-GGTGAAAAAAGAAAATTCCGAATACATACTTAATACACATCTAAAATAC-ACCATCAATAATATggaaaaaagtatgagagacg
gi|3 : c-----T-TTT-CCACCC----TA-TTTGCCCGTCAAGGTGAAAAAAGAAAA-TTCCGAATACATACT-T-AATACACATC--TAAAATACAC---CA----TCAATAATATTGTCTCCCAA----AAGATGACATTGCTT--TTGCATAAACTGTAGCAGGAGCTTTGGGAACAAA-GTTTTTTGTATAG--GAAAACGTA---GTATAATTT----TCAGCCCCCGTTTGtgtctcccaaaagatgacattgcttttgcataaactgtagcaggagctttgggaacaaagttttttgtataggaaaacgtagtataattttcagcccccgtttggcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|3 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtTAGCAGGAGCTTTGGGAACAAA---GTTTTTTGT----------------ATAGGAAA-ACGTAGTATAAT-TTT-CAGCCCCC---G-TTTGGCACTCTGATT-AAAGCTG-AAA-TTACAGA-----AC----ATTGCACTTCTATACAGGACAC-----C-A-TCAAT-----TGTCTACCGA----AAG-TGATTgcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|4 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtttttccaccctatttgcccgtcaaggtgaaaaaagaaaattccgaatacatacttaatacacatctaaaatacaccatcaataatattgtctcccaaaagatgacattgcttttgcataaactgTGTACCATACATATTCTTCCTGCATA--TGTCAAGTTGCATTGAG-AATT-C-TGTAGGGCAAGTGCCCTAGGGTC-----CATA-CCCCATTTCATATTTGTTGCAAT--ATATATG-TATTTGAAACAATTGAG-TT-T------C-TAAACCATACA--TAC--TGTAGCTGCACATATCAAAATGCACTGAATATTCTGATGGGCAAGTGTCCTGGG
gi|5 : gtaccatctgcaacattaaacactagatgctgtcataagacagcactttagtgtttgcctttagatatattctccaatgtgcaaagaagccacaatagttaccagataacataccatatacaTTCCAA----GAGATGA---GA--A--CT-----ATATGTAAAAGGAGTTCCGGGAGCCAA-G---TTTTTTTTGTAGAAAA-CCATTGT------TT----TCTACCTCCATCTGa
gi|5 : atctgtaacaagggtAA-AGGAGTTCCGGGAGCCAA---GTTTT---TTTT-------------GTAGAAAA-CCATTG-----T-TTT-CTACCTCC---A-TCTGGTCCCCAGAAT-AAAAATAAAAA-TTCCAAA-------------------TC--TACAGGGTAC---CA----TCAGT-----TATCTTCCAA----AAGCTGAGTTGGTCA--TCGCATAAAAGGGATGAAGAACTCTCCAAATCAG-GCC-TTTTAATAG--GAAAA-gtccccagaataaaaataaaaattccaaatctacagggtaccatcagttatcttccaaaagctgagttggtcatcgcataaaagggatgaagaactctccaaatcaggccttttaataggaaaaaaaaaatcgtcgttttgttg
gi|6 : atctgtaacaagggtttccaagagatgagaactatatgtaCTTATTCCACATTTATTGTTGCTGTATA--T-----------------G--T-CAAGCTG--CAAGTGCCCTGCGGTTA--TCTAAAACCCCATTTCATAATTGTTGAAAT--GTAG----T-TTTAAAAC--TTGAG-TTTCTGA-CCCCTAAACCACATA--TATATTCCTGATGCATATATCAAAATACATTGAGTATTCTGACAGGTAAGTGTCCTGGGGTCATTCTGGCCTCCAT-CATATTTT-ATT-TTCaaaaaatcgtcgttttgttg
gi|7 : acAAACAATTGAGGTT-CTGAACCC-TAAACCAAATAAATAT--TCCTGTTTCCTATATCAAAATGCACT----------------AAGTGCCCTGGGGTTATC----------------TTTT-ATTGTTGAAGT--TTGTTTGAAATGGTTGAAATTCCAACCCTTAGAGCAAGTATATTCTTTTTGCACGTGGCA-CA-ATGCACCA----AGCGCCGGAATTTT
gi|8 : aAC---CATTA-CCAAT-----CATCTTCCAA----AAGATGATTTGGCTA--ATACGAAAAATGTAAGAAGAGTT-TAAAAACCGT-A---TTTCTGTgtta
gi|8 : ctgtAAAA-AC--CG-----TATTT-C---------TG-TT--GTCCCCTGGGT-AAAATTGAAAG-TTGCAAA-----ACCGT-ATTGCTTATC--tgtcccctgggtaaaattgaaagttgcaaaaccgtattgcttatcatatttcaataaaaccaactgctgcttaaaataaaatattggg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTAGGCACTGTCATGCAAGTGTTTGTCTTTATATACATGTACTCTCCATTACACTTGTGTATCTAAACATATTAGCAAAGTGGCCAGAATAGTTGCCATAATAACATACCCTATAC
Unaligned ( gi|13 ): GTAATACAGCAAGCAAGTGTTTGCCTCTATATACTCAATGTCATACTTGAGTAACCAGCAAAGAAGTCACAGTAGTTACCACACA
Unaligned ( gi|15 ): ACAAGTGTACTGTTCGTCATACTTGTGTATCTAGCAGAGATGCCACAATATAGATACCATATGACGTACACTATACC
Alignments
lowQualScore : 7777777777777777777777777 1111 11 444444444444444444444444444444 1 1 11 11 1 2222222 1 555555555555 1 3333333 1 33333 55555555555 11 2222 1 222 1 222 2 1 1111 44444444444444444444 11111 222222 22222222222 2222222222 1111111 222222 11 66666666666666666666
lowQualScore : 1 1 5555555555555555555555555 4444 2 0 7777 66 3 6 3 1 2 88 111111111111111111111111111111 0 0 33 33 1 1 2 2 111 0 9 11 8888888 3 0 2 111111111111 6666666 1 2 6 8888888 3 22222 0 0 11111111111 88 88 1111 3 000 3 3 333 1 6 3 0 3 7 1 6 7777 88888888888888888888 1 4 2 00000 4 4 4 888888 33 0 1 3 1 3 66666666666 0 55 0 1 8888888888 7777777 7777 3 2 66 4 333333 1 0 11 22222222222222222222 0 66
lowQualScore : . . ......................... .... . . .... .. . . . . . .. .............................. . . .. .. . . . . ... . . .. ....... . . . ............ ....... . . . ....... . ..... . . ........... .. .. .... . ... . . ... . . . . . . . . .... .................... . . . ..... . . . ...... .. . . . . . ........... . .. . . .......... ....... .... . . .. . ...... . . .. .................... . ..
lowQualScore : 2 0 5555555555555555555555555 0000 5 2 2222 88 2 5 2 2 5 33 333333333333333333333333333333 0 8 88 88 0 2 5 8 888 2 2 00 2222222 5 0 5 000000000000 3333333 0 0 7 7777777 3 00000 7 7 00000000000 33 33 7777 3 333 7 3 333 0 7 3 7 7 3 0 7 7777 99999999999999999999 6 4 7 00000 0 0 9 111111 99 3 2 6 0 6 44444444444 1 00 7 0 1111111111 8888888 7777 1 4 11 2 444444 0 6 00 55555555555555555555 2 88
consensus : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-G-TATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACCG----AGCGCCGGATTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-AC---CTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCC--TA-TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC-A-TCAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
Reference ( family-896 ) : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-G-TATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACCG----AGCGCCGGATTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-AC---CTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCC--TA-TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC-A-TCAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
gi|1 : CTTATACCATAAACATTCTTGCTTCATA--T------------TGAGTA--T-TATGTTGGGCAAGTGCCCTGGAGTCA--CCCAAAACCA-AT---ATACTT----AAATCAGTAGA-GGTATTC---AC----------------CCC-TTAACCA--TA--TAT--TCCAGTTGCATATATCAAGATGCATTGA-TATTCTGATAAGCTAGTGCCCTGGGGTCATCATAACCACCCT-TATTTTTTCATTGTTCAAATACCT--TTAAAATGGTTGAGATTTCTACCCTTAAAGAAAGGAAGTT---TTTG-AC-----A-CA-ATGCACTTTAATAGCACCACATTTTTTTCATTGTGTATCCCAATAATTGCC--C-CCAAAGGTGAAAAAC-AAAATTCACAA-AC---CTTATTGAACATCTACAGGAC-AACACCGATCACATAG-AGGAGTTCTGGGAACCAG---GTCTT---T----------------GTAGACAA-ACATTA-----T-TTT-CGACCCCTATTAATTTGACCCCCTGGGT-AAGAATGAAAA-TTCCGAA-----ACCAT-ATTGCACATC--TACAGGACAC---CACTA-TAAAT-----AAACTCCTAATTAAAAGATGATTTGGCCA--CTGTGTAAAATGTAAAAGGGATTTTGGAAACCAG-G---TTTGTATAG--AAAAA-GCA---A------TT----TTGACTCCCATTTG
gi|10 : tttgAAC-ACGTCA-----T-TTT-ATACTTCT--T--TTTGGCCCCTAGG-T-AA---TGAAAAGTTCCGAA-----ATC-T--TTGGTCATC--TATAGGATGC---CAC----CAAT-----CATATTCCAA----ACGATGATTTGGCTA--CTGTG
gi|11 : -TTCCAAA-----ACC-TTATCGCACATC--GAAAGG-TAC---CAC-A---AAC-----C-------------------ATTTGGCTATACTGTGTAAAATGTAAGAAGCATTTTGGAAACCAGTA---TTTGTTTAa
gi|12 : TATATAATTTATAGTCTTCCTGCATAGAT------------CGAG-A--TGCAT--TGGGCGAGTGCCCTGGTGTCATTCCC--AACCCTATTTCATTTTTG
gi|14 : atacatgAG-ATGAGTTCTGGAAACCAAGAGGGTTT---T----------------GTCGAGAACACGCCG-----T-TTT-TGACCCC----A-TTTGG-CCCCAGGAT-GAAA
gi|16 : cataCCTAGAGT-AAAAATAAAAA-TTCGGAA-----A--------------C--TGCGAGTCAT---CAC----CAAT-----CATCTTTCAA----AA
gi|2 : TT---T----------------GTCGACAA--CGTCG-----T-TTTTCTTTCACA--AA-TATGCTCCCCAGGAT-GTAAATGAAAG-TCGTGAA-----AACAC-ATTGCACGTC--TACAGGACGTGTACAC-AACCAAC-----CTTCTTCCGA----AAGCTGATTTGACTG--CTGTGTTAGATGTGAGAGGAGTTCAAGGAACTTT-T---TTTTTAAAG--AAAAA---A---A------TCGTTATCGACCCC--TTTGctgtg
gi|2 : AG-AGGAGTTCAAGGAACTTT---TTTTT---T----------------AAAGAAAA-AAATCG-----T-TAT-CGACCCCT--TT-GTTGTCTCT--GGGT-GAAAATAAAAA-TTCTGAA-----ACCAT-ATTGCAAATA--TAGAGttgtctctgggtgaaaataaaaattctgaaaccatattgcaaatatagagactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|2 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgTTATC-GA--------CCCC-T--TTGTTGTC-TCTG-GGTGAAAA-TAAAAATTCTGAA-AC---CATATTGCAAATATAGAG-ACTACTGCTTA-AAAATGT-AAAAGTTCTGGGTACCA-------TT---TGGGGGGGGGGGGGGGGGTTGGAAA-ACATCG-----T-TTT-TTACCCTCA-TA--------CATATAGT-AAAATTGAAAA-CTACGCA-----ACCTT-ATTGCACATC--TGTTGGAC-----------TCA-----------TTC-------AAGACTAATTGATTG--CAGCTTACAATAAAAGTGGAATTTGAGGAactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgagaggagttcaaggaactttttttttaaagaaaaaaatcgGGAGTCGTCATGACCCCT-TTCATTTTTA-GTTGTTCA----------------------------GACCCTTCAAGTAAATATATTTTTGTTGCACAT---AACACATGCACCG----AGCACCAGGTTTTTC-CA--------CCCTAT--TTGCC--CGTCAA-GGTGAAAAAAGAAAATTCCGAATACATACTTAATACACATCTAAAATAC-ACCATCAATAATATggaaaaaagtatgagagacg
gi|3 : c-----T-TTT-CCACCC----TA-TTTGCCCGTCAAGGTGAAAAAAGAAAA-TTCCGAATACATACT-T-AATACACATC--TAAAATACAC---CA----TCAATAATATTGTCTCCCAA----AAGATGACATTGCTT--TTGCATAAACTGTAGCAGGAGCTTTGGGAACAAA-GTTTTTTGTATAG--GAAAACGTA---GTATAATTT----TCAGCCCCCGTTTGtgtctcccaaaagatgacattgcttttgcataaactgtagcaggagctttgggaacaaagttttttgtataggaaaacgtagtataattttcagcccccgtttggcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|3 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtTAGCAGGAGCTTTGGGAACAAA---GTTTTTTGT----------------ATAGGAAA-ACGTAGTATAAT-TTT-CAGCCCCC---G-TTTGGCACTCTGATT-AAAGCTG-AAA-TTACAGA-----AC----ATTGCACTTCTATACAGGACAC-----C-A-TCAAT-----TGTCTACCGA----AAG-TGATTgcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|4 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtttttccaccctatttgcccgtcaaggtgaaaaaagaaaattccgaatacatacttaatacacatctaaaatacaccatcaataatattgtctcccaaaagatgacattgcttttgcataaactgTGTACCATACATATTCTTCCTGCATA--TGTCAAGTTGCATTGAG-AATT-C-TGTAGGGCAAGTGCCCTAGGGTC-----CATA-CCCCATTTCATATTTGTTGCAAT--ATATATG-TATTTGAAACAATTGAG-TT-T------C-TAAACCATACA--TAC--TGTAGCTGCACATATCAAAATGCACTGAATATTCTGATGGGCAAGTGTCCTGGG
gi|5 : gtaccatctgcaacattaaacactagatgctgtcataagacagcactttagtgtttgcctttagatatattctccaatgtgcaaagaagccacaatagttaccagataacataccatatacaTTCCAA----GAGATGA---GA--A--CT-----ATATGTAAAAGGAGTTCCGGGAGCCAA-G---TTTTTTTTGTAGAAAA-CCATTGT------TT----TCTACCTCCATCTGa
gi|5 : atctgtaacaagggtAA-AGGAGTTCCGGGAGCCAA---GTTTT---TTTT-------------GTAGAAAA-CCATTG-----T-TTT-CTACCTCC---A-TCTGGTCCCCAGAAT-AAAAATAAAAA-TTCCAAA-------------------TC--TACAGGGTAC---CA----TCAGT-----TATCTTCCAA----AAGCTGAGTTGGTCA--TCGCATAAAAGGGATGAAGAACTCTCCAAATCAG-GCC-TTTTAATAG--GAAAA-gtccccagaataaaaataaaaattccaaatctacagggtaccatcagttatcttccaaaagctgagttggtcatcgcataaaagggatgaagaactctccaaatcaggccttttaataggaaaaaaaaaatcgtcgttttgttg
gi|6 : atctgtaacaagggtttccaagagatgagaactatatgtaCTTATTCCACATTTATTGTTGCTGTATA--T-----------------G--T-CAAGCTG--CAAGTGCCCTGCGGTTA--TCTAAAACCCCATTTCATAATTGTTGAAAT--GTAG----T-TTTAAAAC--TTGAG-TTTCTGA-CCCCTAAACCACATA--TATATTCCTGATGCATATATCAAAATACATTGAGTATTCTGACAGGTAAGTGTCCTGGGGTCATTCTGGCCTCCAT-CATATTTT-ATT-TTCaaaaaatcgtcgttttgttg
gi|7 : acAAACAATTGAGGTT-CTGAACCC-TAAACCAAATAAATAT--TCCTGTTTCCTATATCAAAATGCACT----------------AAGTGCCCTGGGGTTATC----------------TTTT-ATTGTTGAAGT--TTGTTTGAAATGGTTGAAATTCCAACCCTTAGAGCAAGTATATTCTTTTTGCACGTGGCA-CA-ATGCACCA----AGCGCCGGAATTTT
gi|8 : aAC---CATTA-CCAAT-----CATCTTCCAA----AAGATGATTTGGCTA--ATACGAAAAATGTAAGAAGAGTT-TAAAAACCGT-A---TTTCTGTgtta
gi|8 : ctgtAAAA-AC--CG-----TATTT-C---------TG-TT--GTCCCCTGGGT-AAAATTGAAAG-TTGCAAA-----ACCGT-ATTGCTTATC--tgtcccctgggtaaaattgaaagttgcaaaaccgtattgcttatcatatttcaataaaaccaactgctgcttaaaataaaatattggg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTAGGCACTGTCATGCAAGTGTTTGTCTTTATATACATGTACTCTCCATTACACTTGTGTATCTAAACATATTAGCAAAGTGGCCAGAATAGTTGCCATAATAACATACCCTATAC
Unaligned ( gi|13 ): GTAATACAGCAAGCAAGTGTTTGCCTCTATATACTCAATGTCATACTTGAGTAACCAGCAAAGAAGTCACAGTAGTTACCACACA
Unaligned ( gi|15 ): ACAAGTGTACTGTTCGTCATACTTGTGTATCTAGCAGAGATGCCACAATATAGATACCATATGACGTACACTATACC
Alignments
lowQualScore : 7777777777777777777777777 1111 11 444444444444444444444444444444 1 1 11 11 1 2222222 1 555555555555 1 3333333 1 33333 55555555555 11 2222 1 222 1 222 2 1 1111 44444444444444444444 11111 222222 22222222222 2222222222 1111111 222222 11 66666666666666666666
lowQualScore : 1 1 5555555555555555555555555 4444 2 0 7777 66 3 6 3 1 2 88 111111111111111111111111111111 0 0 33 33 1 1 2 2 111 0 9 11 8888888 3 0 2 111111111111 6666666 1 2 6 8888888 3 22222 0 0 11111111111 88 88 1111 3 000 3 3 333 1 6 3 0 3 7 1 6 7777 88888888888888888888 1 4 2 00000 4 4 4 888888 33 0 1 3 1 3 66666666666 0 55 0 1 8888888888 7777777 7777 3 2 66 4 333333 1 0 11 22222222222222222222 0 66
lowQualScore : . . ......................... .... . . .... .. . . . . . .. .............................. . . .. .. . . . . ... . . .. ....... . . . ............ ....... . . . ....... . ..... . . ........... .. .. .... . ... . . ... . . . . . . . . .... .................... . . . ..... . . . ...... .. . . . . . ........... . .. . . .......... ....... .... . . .. . ...... . . .. .................... . ..
lowQualScore : 2 0 5555555555555555555555555 0000 5 2 2222 88 2 5 2 2 5 33 333333333333333333333333333333 0 8 88 88 0 2 5 8 888 2 2 00 2222222 5 0 5 000000000000 3333333 0 0 7 7777777 3 00000 7 7 00000000000 33 33 7777 3 333 7 3 333 0 7 3 7 7 3 0 7 7777 99999999999999999999 6 4 7 00000 0 0 9 111111 99 3 2 6 0 6 44444444444 1 00 7 0 1111111111 8888888 7777 1 4 11 2 444444 0 6 00 55555555555555555555 2 88
consensus : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-G-TATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACCG----AGCGCCGGATTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-AC---CTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCC--TA-TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC-A-TCAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
Reference ( family-896 ) : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-G-TATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACCG----AGCGCCGGATTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-AC---CTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCC--TA-TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC-A-TCAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
gi|1 : CTTATACCATAAACATTCTTGCTTCATA--T------------TGAGTA--T-TATGTTGGGCAAGTGCCCTGGAGTCA--CCCAAAACCA-AT---ATACTT----AAATCAGTAGA-GGTATTC---AC----------------CCC-TTAACCA--TA--TAT--TCCAGTTGCATATATCAAGATGCATTGA-TATTCTGATAAGCTAGTGCCCTGGGGTCATCATAACCACCCT-TATTTTTTCATTGTTCAAATACCT--TTAAAATGGTTGAGATTTCTACCCTTAAAGAAAGGAAGTT---TTTG-AC-----A-CA-ATGCACTTTAATAGCACCACATTTTTTTCATTGTGTATCCCAATAATTGCC--C-CCAAAGGTGAAAAAC-AAAATTCACAA-AC---CTTATTGAACATCTACAGGAC-AACACCGATCACATAG-AGGAGTTCTGGGAACCAG---GTCTT---T----------------GTAGACAA-ACATTA-----T-TTT-CGACCCCTATTAATTTGACCCCCTGGGT-AAGAATGAAAA-TTCCGAA-----ACCAT-ATTGCACATC--TACAGGACAC---CACTA-TAAAT-----AAACTCCTAATTAAAAGATGATTTGGCCA--CTGTGTAAAATGTAAAAGGGATTTTGGAAACCAG-G---TTTGTATAG--AAAAA-GCA---A------TT----TTGACTCCCATTTG
gi|10 : tttgAAC-ACGTCA-----T-TTT-ATACTTCT--T--TTTGGCCCCTAGG-T-AA---TGAAAAGTTCCGAA-----ATC-T--TTGGTCATC--TATAGGATGC---CAC----CAAT-----CATATTCCAA----ACGATGATTTGGCTA--CTGTG
gi|11 : -TTCCAAA-----ACC-TTATCGCACATC--GAAAGG-TAC---CAC-A---AAC-----C-------------------ATTTGGCTATACTGTGTAAAATGTAAGAAGCATTTTGGAAACCAGTA---TTTGTTTAa
gi|12 : TATATAATTTATAGTCTTCCTGCATAGAT------------CGAG-A--TGCAT--TGGGCGAGTGCCCTGGTGTCATTCCC--AACCCTATTTCATTTTTG
gi|14 : atacatgAG-ATGAGTTCTGGAAACCAAGAGGGTTT---T----------------GTCGAGAACACGCCG-----T-TTT-TGACCCC----A-TTTGG-CCCCAGGAT-GAAA
gi|16 : cataCCTAGAGT-AAAAATAAAAA-TTCGGAA-----A--------------C--TGCGAGTCAT---CAC----CAAT-----CATCTTTCAA----AA
gi|2 : TT---T----------------GTCGACAA--CGTCG-----T-TTTTCTTTCACA--AA-TATGCTCCCCAGGAT-GTAAATGAAAG-TCGTGAA-----AACAC-ATTGCACGTC--TACAGGACGTGTACAC-AACCAAC-----CTTCTTCCGA----AAGCTGATTTGACTG--CTGTGTTAGATGTGAGAGGAGTTCAAGGAACTTT-T---TTTTTAAAG--AAAAA---A---A------TCGTTATCGACCCC--TTTGctgtg
gi|2 : AG-AGGAGTTCAAGGAACTTT---TTTTT---T----------------AAAGAAAA-AAATCG-----T-TAT-CGACCCCT--TT-GTTGTCTCT--GGGT-GAAAATAAAAA-TTCTGAA-----ACCAT-ATTGCAAATA--TAGAGttgtctctgggtgaaaataaaaattctgaaaccatattgcaaatatagagactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|2 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgTTATC-GA--------CCCC-T--TTGTTGTC-TCTG-GGTGAAAA-TAAAAATTCTGAA-AC---CATATTGCAAATATAGAG-ACTACTGCTTA-AAAATGT-AAAAGTTCTGGGTACCA-------TT---TGGGGGGGGGGGGGGGGGTTGGAAA-ACATCG-----T-TTT-TTACCCTCA-TA--------CATATAGT-AAAATTGAAAA-CTACGCA-----ACCTT-ATTGCACATC--TGTTGGAC-----------TCA-----------TTC-------AAGACTAATTGATTG--CAGCTTACAATAAAAGTGGAATTTGAGGAactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgagaggagttcaaggaactttttttttaaagaaaaaaatcgGGAGTCGTCATGACCCCT-TTCATTTTTA-GTTGTTCA----------------------------GACCCTTCAAGTAAATATATTTTTGTTGCACAT---AACACATGCACCG----AGCACCAGGTTTTTC-CA--------CCCTAT--TTGCC--CGTCAA-GGTGAAAAAAGAAAATTCCGAATACATACTTAATACACATCTAAAATAC-ACCATCAATAATATggaaaaaagtatgagagacg
gi|3 : c-----T-TTT-CCACCC----TA-TTTGCCCGTCAAGGTGAAAAAAGAAAA-TTCCGAATACATACT-T-AATACACATC--TAAAATACAC---CA----TCAATAATATTGTCTCCCAA----AAGATGACATTGCTT--TTGCATAAACTGTAGCAGGAGCTTTGGGAACAAA-GTTTTTTGTATAG--GAAAACGTA---GTATAATTT----TCAGCCCCCGTTTGtgtctcccaaaagatgacattgcttttgcataaactgtagcaggagctttgggaacaaagttttttgtataggaaaacgtagtataattttcagcccccgtttggcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|3 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtTAGCAGGAGCTTTGGGAACAAA---GTTTTTTGT----------------ATAGGAAA-ACGTAGTATAAT-TTT-CAGCCCCC---G-TTTGGCACTCTGATT-AAAGCTG-AAA-TTACAGA-----AC----ATTGCACTTCTATACAGGACAC-----C-A-TCAAT-----TGTCTACCGA----AAG-TGATTgcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|4 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtttttccaccctatttgcccgtcaaggtgaaaaaagaaaattccgaatacatacttaatacacatctaaaatacaccatcaataatattgtctcccaaaagatgacattgcttttgcataaactgTGTACCATACATATTCTTCCTGCATA--TGTCAAGTTGCATTGAG-AATT-C-TGTAGGGCAAGTGCCCTAGGGTC-----CATA-CCCCATTTCATATTTGTTGCAAT--ATATATG-TATTTGAAACAATTGAG-TT-T------C-TAAACCATACA--TAC--TGTAGCTGCACATATCAAAATGCACTGAATATTCTGATGGGCAAGTGTCCTGGG
gi|5 : gtaccatctgcaacattaaacactagatgctgtcataagacagcactttagtgtttgcctttagatatattctccaatgtgcaaagaagccacaatagttaccagataacataccatatacaTTCCAA----GAGATGA---GA--A--CT-----ATATGTAAAAGGAGTTCCGGGAGCCAA-G---TTTTTTTTGTAGAAAA-CCATTGT------TT----TCTACCTCCATCTGa
gi|5 : atctgtaacaagggtAA-AGGAGTTCCGGGAGCCAA---GTTTT---TTTT-------------GTAGAAAA-CCATTG-----T-TTT-CTACCTCC---A-TCTGGTCCCCAGAAT-AAAAATAAAAA-TTCCAAA-------------------TC--TACAGGGTAC---CA----TCAGT-----TATCTTCCAA----AAGCTGAGTTGGTCA--TCGCATAAAAGGGATGAAGAACTCTCCAAATCAG-GCC-TTTTAATAG--GAAAA-gtccccagaataaaaataaaaattccaaatctacagggtaccatcagttatcttccaaaagctgagttggtcatcgcataaaagggatgaagaactctccaaatcaggccttttaataggaaaaaaaaaatcgtcgttttgttg
gi|6 : atctgtaacaagggtttccaagagatgagaactatatgtaCTTATTCCACATTTATTGTTGCTGTATA--T-----------------G--T-CAAGCTG--CAAGTGCCCTGCGGTTA--TCTAAAACCCCATTTCATAATTGTTGAAAT--GTAG----T-TTTAAAAC--TTGAG-TTTCTGA-CCCCTAAACCACATA--TATATTCCTGATGCATATATCAAAATACATTGAGTATTCTGACAGGTAAGTGTCCTGGGGTCATTCTGGCCTCCAT-CATATTTT-ATT-TTCaaaaaatcgtcgttttgttg
gi|7 : acAAACAATTGAGGTT-CTGAACCC-TAAACCAAATAAATAT--TCCTGTTTCCTATATCAAAATGCACT----------------AAGTGCCCTGGGGTTATC----------------TTTT-ATTGTTGAAGT--TTGTTTGAAATGGTTGAAATTCCAACCCTTAGAGCAAGTATATTCTTTTTGCACGTGGCA-CA-ATGCACCA----AGCGCCGGAATTTT
gi|8 : aAC---CATTA-CCAAT-----CATCTTCCAA----AAGATGATTTGGCTA--ATACGAAAAATGTAAGAAGAGTT-TAAAAACCGT-A---TTTCTGTgtta
gi|8 : ctgtAAAA-AC--CG-----TATTT-C---------TG-TT--GTCCCCTGGGT-AAAATTGAAAG-TTGCAAA-----ACCGT-ATTGCTTATC--tgtcccctgggtaaaattgaaagttgcaaaaccgtattgcttatcatatttcaataaaaccaactgctgcttaaaataaaatattggg
blockSeqs : T C TGTCAAGTTGCATTGAGAATT AAGC G ATTC AT A T T T G . ATGTATTTGAAACAATTGAGTTT C T AA AT A C G A TGG A GA CCTTTC T . G AGTTTGTTTG AATTCCA T T C GTGGCA C G GA TA . GTC . AAG T T ATA G T T T T A C AGAG TGGGGGGGGGGGGGGGG C C G TATAA A T T CATA GC A G A G TACATACTT TA A GTACACAAC AATATTG . A T TA T AGTTT G TA CGTAGTATAATTT CG
blockSeqs : C C GATCGAGATG TGT G AT AA A C T T G . TTTTAAAACTTGAGTTTCTGA . C . . T A G G CAG C GG TCCATC A . G . G C C C ATAA . A CA C . CG . TA C . . A . . A . T . T TTGT C . G . . . G AAA CT G . A . ACCTT . T CATTAC CA . C T . C GGCC T . CCATTGTTT CA
blockSeqs : T G TGT AT . . . . C T A G . A . . T T . . . . . . . . . . A TTTT A . G . . . T TTT TC A . A . AACAC . A CACA CA . A T . T GTA G . AATCGTTA .
blockSeqs : . A T T . A . . . G TT CC G . T . ACCAT . A CAC CT . A A . T TT T .
blockSeqs : . . T A . A . . . T TA GC G . A . ACCTT . A CAC TG . A C . C AG T
blockSeqs : T A . G . . . C CG GT G . C . ACCGT . A CAT TA . C T . C TA C
blockSeqs : . A . . . A CA GT T . A . ATCT . G CAT CA . A G . .
blockSeqs : . . . . . T TG G A . T . AC . . CAT C . . T .
blockSeqs : . . . . A . G . . . A . T . . . .
blockSeqs : . . . . . .
blockSeqCons : CG**** CAT******* ****
originalCons : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-G-TATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACCG----AGCGCCGGATTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-AC---CTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCC--TA-TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACAC---CAC-A-TCAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
finalCons : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-G-TATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACCNCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACCG----AGCGCCGGATTTTTC-CA--------CCCNAT--TTGCC--C-TCAA-GGTGAAAAANGAAAATTCCGAA-AC---CTTATTGCACATCTANAG-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCG-----T-TTT-CNACCCCCG----TTTGGCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATC--TACAGGACACCAT-------CAAT-----CGTCTTCCAA----AAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTAGGCACTGTCATGCAAGTGTTTGTCTTTATATACATGTACTCTCCATTACACTTGTGTATCTAAACATATTAGCAAAGTGGCCAGAATAGTTGCCATAATAACATACCCTATAC
Unaligned ( gi|13 ): GTAATACAGCAAGCAAGTGTTTGCCTCTATATACTCAATGTCATACTTGAGTAACCAGCAAAGAAGTCACAGTAGTTACCACACA
Unaligned ( gi|15 ): ACAAGTGTACTGTTCGTCATACTTGTGTATCTAGCAGAGATGCCACAATATAGATACCATATGACGTACACTATACC
Alignments
lowQualScore : 7777777777777777777777777 1111 11 44444444444444444444444444444 1 11 11 1 22222222 1 555555555555 111 3333333 1 33333 1 44444444 11 2222 1 222 1 222 222 1 1111 44444444444444444444 11111 22222222 22222222222 111111 1111111 222222 11 66666666666666666666
lowQualScore : 1 1 5555555555555555555555555 4444 2 0 7777 66 55 0 3 1 2 88 11111111111111111111111111111 0 77 33 33 1 1 2 2 111 0 9 11 88888888 3 0 2 111111111111 6666666 1 000 6 8888888 3 22222 0 0 3 88888888 88 88 1111 3 000 3 3 333 1 222 3 0 3 7 1 6 7777 88888888888888888888 1 4 2 44444 1 44444444 8888 2 1 3 1 3 44444444444 0 666 1 111111 777 777 7777777 7777 3 2 66 4 333333 1 0 11 22222222222222222222 0 66
lowQualScore : . . ......................... .... . . .... .. .. . . . . .. ............................. . .. .. .. . . . . ... . . .. ........ . . . ............ ....... . ... . ....... . ..... . . . ........ .. .. .... . ... . . ... . ... . . . . . . .... .................... . . . ..... . ........ .... . . . . . ........... . ... . ...... ... ... ....... .... . . .. . ...... . . .. .................... . ..
lowQualScore : 2 0 5555555555555555555555555 0000 5 2 2222 88 88 2 2 2 5 33 33333333333333333333333333333 0 88 88 88 0 2 5 8 888 2 2 00 22222222 5 0 5 000000000000 3333333 0 000 7 7777777 3 00000 7 7 3 33333333 33 33 7777 3 333 7 3 333 0 000 3 7 7 3 0 7 7777 99999999999999999999 6 4 7 00000 0 33333333 5555 5 2 6 0 6 11111111111 1 222 0 555555 000 000 8888888 7777 1 4 11 2 444444 0 6 00 55555555555555555555 2 88
consensus : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-GTATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACC-CCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACC----GAGCGCCGGA-TTTTTCCA--------CCCNAT--TTGCC--C-TC-AAGGTGAAAAANGAAAATTCCGAA-AC---CTTATTGCACATCTANA-G-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCGT-----TTTCNACCCCC----A--TTTG--GCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATCTA--CAGGAC------ACC---AT---CAAT-----CGTCTTC----CAAAAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
Reference ( family-896 ) : NNNNCTTATACCATATATATTCTTNCTGCATA--T------------CGAG-A--T-CATGTTGGGCAAGTGCCCTGGGGTCA--CCCAAAACCCCATTTCATATTTGTTGAAAT--GTAGA-GTATTCGAAACAATTGAG-TT-CTGA-CCC-TAAACCANATA--TAT--TCCNGTTGCATATATCAAAATGCACTGAGTATTCTGATAGGCAAGTGCCCTGGGGTCATCATGACC-NCC-T-CATTTTTT-ATTGTTCAAGT--CT--TTGAAATGGTTGAGATTCCGACCCTTAAAGNAAGTATATTCTTTTTGCACGT---A-CA-ATGCACC----GAGCGCCGGA-TTTTTCCA--------CCCNAT--TTGCC--C-TC-AAGGTGAAAAANGAAAATTCCGAA-AC---CTTATTGCACATCTANA-G-AC-ACCGCCGATAANATAG-AGGAGTTCTGGGAACCAA---GTTTT---T----------------GTAGAAAA-ACGTCGT-----TTTCNACCCCC----G--TTTG--GCCCCCAGGGT-AAAAATGAAAA-TTCCGAA-----ACC-T-ATTGCACATCTA--CAGGAC------ACC---AT---CAAT-----CGTCTTC----CAAAAGATGATTTGGCTA--CTGCGTAAAATGTAAGAGGAGTTCTGGGAACCAG-G---TTTNTATAG--GAAAA-GCA---A------TT----TCGACCCCCGTTTG
gi|1 : CTTATACCATAAACATTCTTGCTTCATA--T------------TGAGTA--T-TATGTTGGGCAAGTGCCCTGGAGTCA--CCCAAAA-CCAAT---ATACTT----AAATCAGTAGAGGTATTC---AC----------------CCC-TTAACC--ATA--TAT--TCCAGTTGCATATATCAAGATGCATTGA-TATTCTGATAAGCTAGTGCCCTGGGGTCATCATAACCACCC-T-TATTTTTTCATTGTTCAAATACCT--TTAAAATGGTTGAGATTTCTACCCTTAAAGAAAGGAAG---TTTTTG-AC-----A-CA-ATGCACTTTAATAGCACCACATTTTTTTCATTGTGTATCCCAATAATTGCC--C-CCAAAGGTGAAAAAC-AAAATTCACAA-AC---CTTATTGAACATCTACAGG-AC-AACACCGATCACATAG-AGGAGTTCTGGGAACCAG---GTCTT---T----------------GTAGACAA-ACATTAT-----TTTCGACCCCTATTAA--TTTG--ACCCCCTGGGT-AAGAATGAAAA-TTCCGAA-----ACCAT-ATTGCACATCTA--CAGGAC------ACCACTAT---AAAT-----AAACTCCTAATTAAAAGATGATTTGGCCA--CTGTGTAAAATGTAAAAGGGATTTTGGAAACCAG-G---TTTGTATAG--AAAAA-GCA---A------TT----TTGACTCCCATTTG
gi|10 : tttgAAC-ACGTCAT-----TTTATACTTCT----T--TTTG--GCCCCTAGG-T-AA---TGAAAAGTTCCGAA-----ATC-T--TTGGTCATCTA--TAGGAT------GCC---AC---CAAT-----CATATTC----CAAACGATGATTTGGCTA--CTGTG
gi|11 : -TTCCAAA-----ACC-TTATCGCACATCGA--AAGG-T------ACC---AC---AAAC-----C-------------------ATTTGGCTATACTGTGTAAAATGTAAGAAGCATTTTGGAAACCAGTA---TTTGTTTAa
gi|12 : TATATAATTTATAGTCTTCCTGCATAGAT------------CGAG-A--TGCAT--TGGGCGAGTGCCCTGGTGTCATTCCC--AACCCTATTTCATTTTTG
gi|14 : atacatgAG-ATGAGTTCTGGAAACCAAGAGGGTTT---T----------------GTCGAGAACACGCCGT-----TTTTGA-CCCC----A--TTTG--G-CCCCAGGAT-GAAA
gi|16 : cataCCTAGAGT-AAAAATAAAAA-TTCGGAA-----A--------------CTG--CGAGTC------ATC---AC---CAAT-----CATCTTT----CAAAA
gi|2 : TT---T----------------GTCGACAA--CGTCGT-----TTTTCTTTCAC----AAATATG--CTCCCCAGGAT-GTAAATGAAAG-TCGTGAA-----AACAC-ATTGCACGTCTA--CAGGACGTGTACACA---AC---CAAC-----CTTCTTC----CGAAAGCTGATTTGACTG--CTGTGTTAGATGTGAGAGGAGTTCAAGGAACTTT-T---TTTTTAAAG--AAAAA---A---A------TCGTTATCGACCCC--TTTGctgtg
gi|2 : AG-AGGAGTTCAAGGAACTTT---TTTTT---T----------------AAAGAAAA-AAATCGT-----TATCGACCCC--------TTTGTTGTCTCT-GGGT-GAAAATAAAAA-TTCTGAA-----ACCAT-ATTGCAAATATA--GAGttgtctctgggtgaaaataaaaattctgaaaccatattgcaaatatagagactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|2 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgTTATCGA--------CCCC-T--TTGTTGTC-TC-TGGGTGAAAA-TAAAAATTCTGAA-AC---CATATTGCAAATATAGA-G-ACTACTGCTTA-AAAATGT-AAAAGTTCTGGGTACCA-------TT---TGGGGGGGGGGGGGGGGGTTGGAAA-ACATCGT-----TTTTTACCCTC----A--T-------ACATATAGT-AAAATTGAAAA-CTACGCA-----ACCTT-ATTGCACATCTG--TTGGAC-------------T---CA-----------TTC-------AAGACTAATTGATTG--CAGCTTACAATAAAAGTGGAATTTGAGGAactactgcttaaaaatgtaaaagttctgggtaccatttgggggggggggggggggttggaaaacatcgttttttaccctcatacatatagtaaaattgaaaactacgcaaccttattgcacatctgttggactcattcaagactaattgattgcagcttacaataaaagtggaatttgaggaggaaaaaagtatgagagacg
gi|3 : tttgtcgacaacgtcgtttttctttcacaaatatgctccccaggatgtaaatgaaagtcgtgaaaacacattgcacgtctacaggacgtgtacacaaccaaccttcttccgaaagctgatttgactgctgtgttagatgtgagaggagttcaaggaactttttttttaaagaaaaaaatcgGGAGTCGTCATGACC-CCT-TTCATTTTTA-GTTGTTCA----------------------------GACCCTTCAAGTAAATATATTTTTGTTGCACAT---AACACATGCACC----GAGCACCAGG-TTTTTCCA--------CCCTAT--TTGCC--CGTC-AAGGTGAAAAAAGAAAATTCCGAATACATACTTAATACACATCTAAA-ATAC-ACCATCAATAATATggaaaaaagtatgagagacg
gi|3 : cT-----TTTCCACCCT-----A--TTTG--CCCGTCAAGGTGAAAAAAGAAAA-TTCCGAATACATACT-T-AATACACATCTA--AAATAC------ACC---AT---CAATAATATTGTCTCC----CAAAAGATGACATTGCTT--TTGCATAAACTGTAGCAGGAGCTTTGGGAACAAA-GTTTTTTGTATAG--GAAAACGTA---GTATAATTT----TCAGCCCCCGTTTGtgtctcccaaaagatgacattgcttttgcataaactgtagcaggagctttgggaacaaagttttttgtataggaaaacgtagtataattttcagcccccgtttggcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|3 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtTAGCAGGAGCTTTGGGAACAAA---GTTTT---TTGT-------------ATAGGAAA-ACGTAGTATAATTTTCAGCCCCC----G--TTTG--GCACTCTGATT-AAAGCTGAAA--TTACAGA-----AC----ATTGCACTTCTATACAGGAC------ACC---AT---CAAT-----TGTCTAC----CGAAAG-TGATTgcactctgattaaagctgaaattacagaacattgcacttctatacaggacaccatcaattgtctaccgaaagtgatt
gi|4 : cggagtcgtcatgacccctttcatttttagttgttcagacccttcaagtaaatatatttttgttgcacataacacatgcaccgagcaccaggtttttccaccctatttgcccgtcaaggtgaaaaaagaaaattccgaatacatacttaatacacatctaaaatacaccatcaataatattgtctcccaaaagatgacattgcttttgcataaactgTGTACCATACATATTCTTCCTGCATA--TGTCAAGTTGCATTGAG-AATT-C-TGTAGGGCAAGTGCCCTAGGGTC-----CATA-CCCCATTTCATATTTGTTGCAAT--ATATATGTATTTGAAACAATTGAG-TT-T------C-TAAACCATACA--TAC--TGTAGCTGCACATATCAAAATGCACTGAATATTCTGATGGGCAAGTGTCCTGGG
gi|5 : gtaccatctgcaacattaaacactagatgctgtcataagacagcactttagtgtttgcctttagatatattctccaatgtgcaaagaagccacaatagttaccagataacataccatatacaTTC----CAAGAGATGA---GA--A--CT-----ATATGTAAAAGGAGTTCCGGGAGCCAA-G---TTTTTTTTGTAGAAAA-CCATTGT------TT----TCTACCTCCATCTGa
gi|5 : atctgtaacaagggtAA-AGGAGTTCCGGGAGCCAA---GTTTTTTTT----------------GTAGAAAA-CCATTGT-----TTTCTACCTCC----A--TCTG--GTCCCCAGAAT-AAAAATAAAAA-TTCCAA-------------------ATCTA--CAGGGT------ACC---AT---CAGT-----TATCTTC----CAAAAGCTGAGTTGGTCA--TCGCATAAAAGGGATGAAGAACTCTCCAAATCAG-GCC-TTTTAATAG--GAAAA-gtccccagaataaaaataaaaattccaaatctacagggtaccatcagttatcttccaaaagctgagttggtcatcgcataaaagggatgaagaactctccaaatcaggccttttaataggaaaaaaaaaatcgtcgttttgttg
gi|6 : atctgtaacaagggtttccaagagatgagaactatatgtaCTTATTCCACATTTATTGTTGCTGTATA--T-----------------G--T-CAAGCTG--CAAGTGCCCTGCGGTTA--TCTAAAACCCCATTTCATAATTGTTGAAAT--GTAG---T-TTTAAAAC--TTGAG-TTTCTGA-CCCCTAAACCACATA--TATATTCCTGATGCATATATCAAAATACATTGAGTATTCTGACAGGTAAGTGTCCTGGGGTCATTCTGGCC-TCCAT-CATATTTT-ATT-TTCaaaaaatcgtcgttttgttg
gi|7 : acAAACAATTGAGGTT-CTGAACCC-TAAACCAAATAAATAT--TCCTGTTTCCTATATCAAAATGCACT----------------AAGTGCCCTGGGGTTATC-----------------TTTT-ATTGTTGAAGT--TTGTTTGAAATGGTTGAAATTCCAACCCTTAGAGCAAGTATATTCTTTTTGCACGTGGCA-CA-ATGCACC----AAGCGCCGGA-ATTTT
gi|8 : a------ACC---ATTACCAAT-----CATCTTC----CAAAAGATGATTTGGCTA--ATACGAAAAATGTAAGAAGAGTT-TAAAAACCGT-A---TTTCTGTgtta
gi|8 : ctgtAAAA-AC--CGTA----TTTCT----------G--TT----GTCCCCTGGGT-AAAATTGAAAG-TTGCAAA-----ACCGT-ATTGCTTATCtgtcccctgggtaaaattgaaagttgcaaaaccgtattgcttatcatatttcaataaaaccaactgctgcttaaaataaaatattggg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTAGGCACTGTCATGCAAGTGTTTGTCTTTATATACATGTACTCTCCATTACACTTGTGTATCTAAACATATTAGCAAAGTGGCCAGAATAGTTGCCATAATAACATACCCTATAC
Unaligned ( gi|13 ): GTAATACAGCAAGCAAGTGTTTGCCTCTATATACTCAATGTCATACTTGAGTAACCAGCAAAGAAGTCACAGTAGTTACCACACA
Unaligned ( gi|15 ): ACAAGTGTACTGTTCGTCATACTTGTGTATCTAGCAGAGATGCCACAATATAGATACCATATGACGTACACTATACC