lowQualScore : 1111 1 222222222 8888888888888888888888 222 222 11111 1111 111 111 11 1111111 222222222222222222222222222222222222 1111111 22222 1111111 2222 11 55555555 111 1 55 1111 111 1111 1 33333333333 444444444444444444444 111 1111 22222 222222222 111 1 1 4444444 1 333333 6666666666666 333333 11 22 11 1 11 1 6666666666666 88888888888888888888 1 5555 6666666
lowQualScore : 5 1111 5 7 0 999999999 4444444444444444444444 111 77 5 5 5 111 1 33333 77 2222 000 5 555 22 5 1111111 5 4 4 4 22 4 4 4 666666666666666666666666666666666666 6 4 4 4444444 66 2 4 99999 4444444 7777 5 4 8 4 8 9999 00 66 66 4 66666666 8 444 0 22 4444 99 44 000 7 3333 1 5 1 77777777777 3 5 77 777777777777777777777 5 000 5 3333 6 6 6 5 7 1 5 44444 5 5 5 1 8 222222222 99 77 5 5 888 7 99 444 8 2 0 6 7 6 7 3 0 6 3333333 3 888888 9999999999999 888888 8 88 33 7 88 6 6 7 3 88 3 1111111111111 00000000000000000000 7 2 6 0000 6 4 4 2 3333333 2
lowQualScore : . .... . . . ......... ...................... ... .. . . . ... . ..... .. .... ... . ... .. . ....... . . . . .. . . . .................................... . . . ....... .. . . ..... ....... .... . . . . . .... .. .. .. . ........ . ... . .. .... .. .. ... . .... . . . ........... . . .. ..................... . ... . .... . . . . . . . ..... . . . . . ......... .. .. . . ... . .. ... . . . . . . . . . . ....... . ...... ............. ...... . .. .. . .. . . . . .. . ............. .................... . . . .... . . . . ....... .
lowQualScore : 7 8888 0 0 1 111111111 3333333333333333333333 111 99 7 7 1 444 6 33333 99 1111 000 0 777 99 7 9999999 0 4 4 4 44 4 4 4 000000000000000000000000000000000000 0 4 4 4444444 11 9 4 22222 4444444 9999 0 4 9 4 9 4444 66 11 11 4 44444444 0 000 0 00 2222 22 22 000 0 3333 0 2 0 33333333333 0 7 99 333333333333333333333 7 000 7 3333 7 7 7 2 3 4 7 33333 7 3 1 7 1 999999999 99 99 7 7 777 8 22 000 0 2 7 7 0 3 7 0 5 0 3333333 3 333333 7777777777777 333333 3 33 77 3 33 7 0 3 3 33 3 0000000000000 00000000000000000000 0 5 0 5555 0 0 0 5 0000000 5
consensus : AGGC-ACCTG-AAGT-GTGGATTTTTGT-----TAACCCCCCCCCCC----------------------TTCT-N-AA--A-A-ATTAT---GAAAAAA---TAAATATA--GAAACG----AGA---AAT-TA---TCT-AA-AGTAT-G-T-GAT-TTCC-C-C-GCCG-AT-CA-CTTT---C-AN--A-A-G----T--CG-N--T-----C-TGCA-T-A-------GT--CAGT-TT-C---TA-------CTTTTN-G-C-AAGCTTTT-AAA-ATG-A-C----CA--CTTGTGA--GAT--AC-TAATAT-------ATGT-AAAGGTGCGC---AACAA-AATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAAT---TTCTGTGATCAGC--GCGTC-ATGCTAATGTA-GTGCTA--CTTG--CTT----------------C-TT---TCATC-CAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTGT-ATT----CTG-TCGTTTATTTCACCAGACCCGAGCTTCTA---------CATCCATTGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATTTGAG---ACG-CGTTATCCGATTGGCTCGTCGGTATTCGGACGGTCTCAGCTTTTTNGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG------TTTTTATAGAA--AACAAAAACGATGTCGATC--CAGATTATTTCGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTG-AA--AAGAATGCTCATCTAAAGTATATAACCTNNAAA-AAGATTTAAANTTTGAAACACGTTTCTAAAGCAATCANACNTNTGCATTTTGTTTTATTTATGCATNGACGCGAGCCAATCG
Reference ( gi|1 ) : AGGC-ACCTG-GAAT-GTGGATTGTTGT-----TAGCCCCCCCCCCC----------------------TTCT-C-AA--A-A-ATTAT---GAAAAAA---TGAATATA--AAAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TTCC-C-C-GTCG-AT-CA-CTTC---C-AA--A-A-G----T--CG-A--T-----C-TGTA-T-A-------GT--TAGT-TT-A---TA-------CTTTTA-T-C-AAGCTTTT-AAA-ATG-A-C----CA--TTTGTGA--GAT--AC-TAATA--------ATGT-AAAGGTGCGC---AACAA-AATATGTCTAAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAAAAT---CTCTGTGTTCAGC--GCGTC-ATCCTAATGTA-GTGCTA--CTTG--ATT----------------C-TT---TCATC-CAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTGT-ATT----ATG-TCGTTTATTTCACCAAACCCGAGATTCTA---------CATTTATTGACAG--CCTTA-A-AGG-A-GGTTATGACA--TCGCTATCTGAG---ACG-CATTATCCGATTGGCTCGTCATTTTTCGGACTGTCTCAGCTTTTTTGGTAACACTAGAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG------TTTTTAAAGAA--AACAATAACGATGTCGATC--CAGAGTATTTTAAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGA--TAGTTATAAG-AAGAATGCTCATCTAAAGTATATAACCTCAAAATAAGATATAAAGTTTGGAACACGTTT---AAGCAATTATACATGTGC-----GGTTTATTTATGCATGGACGCGAGCCAATCG
gi|6 : AGGC-ACCTG-AAGT-GTG-ACT-TTGT-----TA---TCCTCCCTC----------------------TTTT-A-AA--A-A-AT-ATA--GAAAAAAATATAAATA-A--AAAACG----AGA---TAT-TA---TCT-AA-AATAT-G-T-GAT-TTCT-C-T-GCCG-AT-CA-CTTC---C-CT--A-A-G----T--CA-A--T-----T-TGCA-T-ACAGTGTAGT--TAGT-TT-T---TA-------CTTTAA-G-C-AAACCTTT-AAA-ATT-A-C----CG--CTTGTGA--TAT--AC-TAATACATTGTAAATGT-AAAGGTGCGC---AACAA-AATATGTT--AACAAACAGGAGGC----CACCTG--CTTTGAGGCCGATTCCCAAGGTACAAACAACTTT---ACTGAAATAAT---TTTTGTGATCAGC--GCGTC-ATGCTAATGTA-GTGCTA--CTTG--CTT----------------C-TT---TCATC-C
gi|9 : AGGCCACCTG-AA---GTGGA--ATTGT-----TTGACCCTCCCCCC----------------------TTCT-A-AA--ACA-ATTATTTTGAAAAAA---AGATTATAGTAAAACG----AGGCATAAT-TA---TCT-CC-AATAT-G-T--ATATTCA-C-C-GCCG-AT-CA-CTTC---C-AAT-A-ATG----T--CG-A--TATATAA-TGCA-TAA-------GT--TA-T-TT-C---TA-------CTTCTAGT-C-AAGA--TT-AAATATGTATC----CAACTTTGTGATGGAT--AC-TAA-A--------ATtc
gi|5 : GGC-ACCTG-AAGT-GTGGTTTTTTGTAACAACACCCCCCCCCCCCCCCCACACACCACA--------TTCT-T-AACGA-A-ATTGC---ACTAAAA---T-AATATA--AAAACG----ATA---AAT-TACTATCTTAATAATA--G-TAGAT-TTCC-CGC-GAGG-AC-CA-CTTT---C-AT--A-A-G----T--CG-T--T-----C-TGCA-T-A-------GT--TTTT-TTTC---TA-------CTTTTT-G-C-ATGCTGTT-GAA-ATG-A-C----CA--CTTGTGA--GAG--AC-TAATAT-------ATGT-AAAGGTACGC---AACAA-AATATGT--AAACAAACAGTGGGC----TACCCG--CTTCAAAACTGAATCACAGGGTACAAACAACTTT---ATCAAAAGAAT---TTCATTGATCA------------------------GCTA--CTTG--CCT----------------C-CT---TCATC-CTA---ACCATTAGTTTTA-TTAGTTTTATTAGTTGT-ATTCGAAATA-TC----ATTTCACTAGACCTAAGCTTCTA---------CTTCCACTGACAG--CCTTA-A-At
gi|10 : GC-ACCTACGAATTGTGGGTTTTTTTG----TAAACCCCTCCCTC----------------------TCCTGT-AA--A-A-AATAT---GACAAAA---TAAGTATA--GAAACG----AAG---AATATA---TC--AA-AGTA--A-T-GAT-TTCC-C-CCGTCA-AT-CG-CTTT---TTAC--ACA-G----T--TG-G--T-----TATGCA-T-A-------GT--CAGT-TT-C---TA-------CTTTTT-G-C-AAGCTTTT-AAG-ATG-A-C----CA--TCGCTAA--GGT--CC-TA
gi|11 : C-ACCTG-ACGT-GTGGGTTTTTGT-----AAACCCTCCTCCTC----------------------TCCTGT-AA--A-A-ATAAT---GACAAAA---TAAGTATA--GAAACG----AGA---AAT-TA---TC--AA-AGTAT-G----AT-TTCC-C-G-GTCA-AT-CG-CTTT---T-AC--A-A-G----T--TG-T--T-----A-TGCA-T-A-------GT--CAGT-TT-C---TA-------CTTTTT-G-CAAAGCTTTT-TAG-ATG-A-C----CA--TCGCTAA--GGT--CC-TAga
gi|14 : C-ACCTG-AAGT-GTTGATTGT-GT-----TAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCTTCT-CAAA--A-A-ATTAT---GAAAAAA---TAAATATA--GAAATGTGTTGGA---AAT-Tgat
gi|18 : C-ACCTG-AAGT-GTGGATTTTTGT-----AAACCCACCtaacaacattgttt
gi|12 : AGT-GTGGATT----T-----CA--CACACCCCCC----------------------TTCT-C-AA--G-ATATGATC--GAACAAA---TAAATCTG--AAA--G----AGA---AAT-TAC--TCT-CA-AGTATCG-T-TAA-T--C-C-C-GTTGGAT-GAACTTT---C-AA--A-A-C----T--CG-T--T-----C-TGCA-T-A-------GT--CAGT-TT-C---TA-------CTTTTT-G-C-AAGCTTTC-GGA-ATG-A-C----CAC-TTTGTGA--GAT--AC-TAGTA--------
gi|15 : aT-TA---TTC-AA-AATAT-G-T-GAT-TTCC-C-C-GCTG-AT-CA-CCTT---C-AT--A-A-GTCATT--CA-A--T-----C-TGCA-T-C-------ATGACAAT-TT-C---TA-------CTTTtcaag
gi|13 : gccaataaatatgaataaactataggcctaatgatttTAT-GCT-AAT-TTCCGC-C-GT---AT-CA-CTTT---T-CATTA-G-A----T--CG-T--T-----C-TGCA-T-A-------GT--CAGT-TTTC---TA-------CTTTTC-G-T-TAGCTTTC-GAG-ATG-GGC----CA--CTTGTGA--GAT--ACATAATAT-------ATGTCAGAGGCGCGG---AA
gi|2 : aacttaatatcttgttcCC-C-C-GCCG-ATACA-CTTTTTTC-AT--A-A-G----TTTCGCACTT-----C-TGCAAT-A-------GT--TATTATT-AAAATAACCTTTCCTTTTA-CGC-AAACTTCTCAAATATG-A-CAGCGCA--CCTGTGA--GATTAAC-TAATAT-------ATGT-AAA-GTGCGCGTAAACAACAAT
gi|3 : ctacatcatgtctataT-ATA-ATG-A-C----CA--CTTGTGA--GAC--AC-TAATATACATGT-ATGT-AAAGGTGCGC---AACAA-AATATGT--AAACAAACAGGGGGT----TACCTG--CTTCGAGATCTATTT-CAAGGTACAATCAACTTT---ACTAACATAAT---TTCTGTAATCAGC--GCGTC-ATGCTAATGTA-GTGCTA--CTTG--CTT----------------C-TT---TCATC-CAA---ATC-CCA-TACCA-TCAGTTTTATTAGTTGT-ATT----CTG-TCGTTTAATTCACCAAACCCGAGCTTTTA---------CATCCATTGACAG--TCTTA-A-AGG-T-GGTTGTGATG--TCGCTATCTGAG---ACG-CGTTATCCAATTGGCTCGTCATTATTCGGAATGTCTCAGATTTTTTGGTACCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCCCGAG------TTTTTAAAGAA--AACAAAAACGATGTCGATC--CAGAGTGTTTTGATAGCTTGTTTTGATAA-ATA--ATTTC-ATAGA--T----------AAGAATGCTCATCTAAAGTATATAACTTCTAAA-AAGATTTAAAGTTTGAAACACGTTT----AGCAATCAAACTTTTGC-----GTTTTATTTATGCATGAACgggcagtaagaggtcggttaaactagtgatctagcgccggatggctaatgtaagtgctagcctggcttcgtttcatttcaatacgcccgataccactgagtgtattaagtgttattttgtcattttttccaacagacctcaaactctaaatcccacccattcatgacagccccttacacaggacggttgtgacactccgctatttgagagcacgtcatcatcgaattgactctcagtgttcgcgcagcctcatctcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtgaaaataccacgagaagcaaaaagccgcgagcttttttttttctaccaccaacacggtcgatcaccagattatttcgaaagcttgtttgacaacatattctttctatagaactagttaaaagcaag
gi|17 : AACAAACAGGAGGCTGCATACTTG--CTTTGAGACAGATTCATGGGATCTAAGTAATTTT---ACGGAAGAAAT---
gi|7 : ACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAGCTTT---ACTGAAAGAAT---TTCTGTGATCAACCTGCTTCGAGGCCGAT----GTGCTA--CTTG--CTTTTATCATCCAAACCCCC-TTCTATCATC-CAA---ACC-CCA-TACCA-TCAGTTTTATTAG--------------------------------ACCCGAGCTTGTA---------CATCCATTGACAG--TCTTA-A-AGG-A-GGTTGTGACA--TCGCTATTTGAG---ACA-Cat
gi|8 : GGGGGG----TACCTGTACTTCGAGGCCGATT-ACAAGGTACAAACAACTTTTATACTGAATGAATTTTCTATTTGCTAAGC--A----------AATGTA-GTGCTA--CTTGCTGTG----------------C-TT---CAATC-CAA----CC-CCA-TACCA-T-AGTTT-AT-AGTTGT-ATT----CTGGTCGTTTATTTCACTAGACC-GAGATTCTA---------CATCCATTGACAG--CCTTA-A-AGGAA-GGTTTTGACA--TCGATAg
gi|4 : gT---ACTGAAAGAAT---TCATGTAATCAGC--ACATC-ATGCTAATATA-GTGCTA--TTTG--TTT----------------C-TT---TCATC-CAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTGT-ATT----TTG-TCGTTTATTTCACCAGACCCGAGCTTCTA---------CTTCCATTGGCAA--CCTTA-A-AGG-A-GATCGTGACA--TCGCTATTTGAG---ACG-CGTTATCCGATTGGCTCGTAGGTATCCGGACGGTCTCAGCTTTTTGGGTAGCACTAAAGGGAAATACATTGTAC-ACGA------ATGAGCTTAACTTCTCAAAGGCGCGAG------TTTTGATAGAA--AACAAAAAGGATGTCGATC--CAGATAATTTTGAAAGCTTATTTTGATAC-ATA--ATTTC-ATAGAATTAGTTGTAAC-AAGAATGCTTATCT------------CTGAA---AAGATTTAAATTTTGAAACACGTTTCTAAAGCAATCATACATGTGCATTTTATTTTATTTATGCATTGACGCGAGCCAATCGa
gi|2 : CTAATGTAAGTGCTAGCCTGG--CTT----------------CGTT---TCATTTCAATACGCC-CGA-TACCACTGAGTGT-ATTAAGTGTTATT----TTG-TCATTTTTTCCAACAGACCTCAAACTCTAAATCCCACCCATTCAT-GACAGCCCCTTACACAGG-ACGGTTGTGACACTCCGCTATTTGAGAGCACGTCATCATCGAATTGACTC-TCAGTGTTCGCGCAGCCTCATCTg
gi|16 : ctacatcatgtctataccccgccgatacacttttttcataagtttcgcacttctgcaatagttattattaaaataacctttccttttacgcaaacttctcaaatatgacagcgcacctgtgagattaactaatatatgtaaagtgcgcgtaaacaacaatgggcagtaagaggtcggttaaactagtgatctagcgccggatggATTAGTTGT-ATT----CTG-TCATTTATTTCACCAGACCCAAGCTTTTA---------CATCCATTGACAG--TTTTA-G-AAG-A-GGTTGTGACA--TCGCTATCTGAG---ACG-CGTcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtgaaaataccacgagaagcaaaaagccgcgagcttttttttttctaccaccaacacggtcgatcaccagattatttcgaaagcttgtttgacaacatattctttctatagaactagttaaaagcaag
gi|2 : GAAAA-------TACCACGAGAAGCAAAAAGC---------------CGCGAGCTTTTTTTTTTCTACCACCAACA----CG--GTCGATCACCAGATTATTTCGAAAGCTTG-TTTGACAACATATTCTTTCTATAGAACTAGTTAAAAGCAAG
Alignments
lowQualScore : 1111111 22222222222 5555555555555555555555555555 111 111 1111 111 11 111 1111 1111111 1111111 111111111 1111 33333333333333 11 1111 11111111 1 1111 1111 11111 11 1 3333333 1 222222 4444444444444 2222 11 1 11 1 44444444444444 11 1 333 55555
lowQualScore : 5 66 2 4 1 5555555 11111111111 3333333333333333333333333333 666 66 5 5 5 333 0 888 4 66 0000 888 4 333 00 5 66 8888 4 4 4 8 4 4 4 111 4 1 4 4 2222 55 8888 2222222 4 4 3333333 55 666 666666666 8 55 4 4 4 8 4 4 4 8888 2222 8 55 55 4 11111111111111 6 11 7777 66 77 777 1 5 5 0 22222222 55 1 5 66 5 5 0 0000 5 5 5 3 1 0 0 5 0000 5 999 5 22222 888 66 5 5 666 77 6 33 0 2 44 1 6 1 1 2222222 0 888888 7777777777777 1111 4 3 33 3 2 3 0 33 0 22222222222222 7 55 3 1 777 1 1 1 11111 1
lowQualScore : . .. . . . ....... ........... ............................ ... .. . . . ... . ... . .. .... ... . ... .. . .. .... . . . . . . . ... . . . . .... .. .... ....... . . ....... .. ... ......... . .. . . . . . . . .... .... . .. .. . .............. . .. .... .. .. ... . . . . ........ .. . . .. . . . .... . . . . . . . . .... . ... . ..... ... .. . . ... .. . .. . . .. . . . . ....... . ...... ............. .... . . .. . . . . .. . .............. . .. . . ... . . . ..... .
lowQualScore : 0 99 7 4 9 2222222 11111111111 5555555555555555555555555555 000 99 0 0 0 888 2 888 1 99 6666 888 4 888 11 0 33 2222 4 0 0 0 0 0 0 000 0 0 0 0 5555 55 0000 2222222 0 0 0000000 55 222 000000000 0 44 4 4 0 0 0 0 0 5555 7777 0 55 55 0 88888888888888 7 00 5555 99 66 888 9 0 6 2 22222222 22 4 0 99 0 0 0 1111 7 7 7 0 4 1 1 0 6666 0 111 0 55555 888 99 0 0 111 99 7 88 0 5 55 2 5 0 0 5555555 0 888888 8888888888888 2222 0 2 88 0 0 2 0 88 0 22222222222222 3 00 3 0 333 0 0 0 77777 0
consensus : AGGC-ACCT--GAAGTGTGGATT-TTTGT-NA----ACCCC-----------CCCCC-----------CC---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--GTT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGT--TA-AA-AAGAATGCTCATCTAAAGTATATAACCTC-AAA-AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
Reference ( family-866 ) : AGGC-ACCT--GAAGTGTGGATT-TTTGT-TA----ACCCC-----------CCCCC-----------CC---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AGTAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ANA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--GTT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATTTGAGA-CGCGTTATC--CG-ATTGGCTCGTCGGTATTCGGACGGTCTCAGCTTTTTNGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTATAGAAAACAAAAACGATGTCGATC--CAGATTATTTCGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGT--TG-AA-AAGAATGCTCATCTAAAGTATATAACCTNNAAA-AAGATTTAAANTTTGAAACACGTTTCTAAAGCAATCANACNTNTGCATTTTGTTTTATTTATGCATNGACGCGAGCCAATCG
gi|1 : AGGC-ACCT--GGAATGTGGATT-GTTGT-TA----GCCCC-----------CCCCC-----------CC---------------TTCT-C-AA--A-A-AT-TAT---GAAAAAA---TGAATATAA--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGTCG-AT-CA-C-TTC---C-AAA-A-G----T--CGA---T-----C-TGTA-T-A-------GT--TA--GTT---------T-ATACTTTTA-T-C-AAGCTTTT-AAA-AT-G-A-C----CA--T-TTG-TGA--GAT--AC-TAATA-A------T-------GT-AAAGGTGCGCAACAAAATATGTCTAAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAAAATCT-CTGTGTTCAGC--GCGTC-AT-CCTAATGT-AGTGCTA--CTTGAT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTA----T-GTCG--TTTATTTCACCAAACC-CGAGATTCTA-----CATTTAT---TGACAG--CCTTA-A-AGG-A-GGTTATGACA--TCGCTATCTGAGA-CGCATTATC--CG-ATTGGCTCGTCATTTTTCGGACTGTCTCAGCTTTTTTGGTAACACTAGAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTAAAGAAAACAATAACGATGTCGATC--CAGAGTATTTTAAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGA--TAGTTATA-AG-AAGAATGCTCATCTAAAGTATATAACCTCAAAATAAGATATAAAGTTTGGAACACGTTT---AAGCAATTATACATGTGC-----GGTTTATTTATGCATGGACGCGAGCCAATCG
gi|10 : GC-ACCTACGAATTGTGGGTT-TTTTTGTA----AACCC-----------CTCCC-----------TC---------------TCCT-GTAA--A-A-AA-TAT---GACAAAA---TAAGTATAG--AAACG----AAG---AATATA---TC--AA-AGTA--A-T-GAT-TTCCCC-CGTCA-AT-CG-CTTTT---T-ACACA-G----T--TGG---T-----TATGCA-T-A-------GT--CA--GTT---------T-CTACTTTTT-G-C-AAGCTTTT-AAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TA
gi|11 : C-ACCT--GACGTGTGGGTT-TTTGT-AA----ACCCT-----------CCTCC-----------TC---------------TCCT-GTAA--A-A-AT-AAT---GACAAAA---TAAGTATAG--AAACG----AGA---AAT-TA---TC--AA-AGTAT-G----AT-TT-CCC-GGTCA-AT-CG-C-TTT---T-ACA-A-G----T--TGT---T-----A-TGCA-T-A-------GT--CA--GTT---------T-CTACTTTTT-G-CAAAGCTTTT-TAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TAga
gi|12 : AAGTGTGGATT-TC----------ACACA-----------CCCCC-----------C----------------TTCT-C-AA--G-ATAT-GATC--GAACAAA---TAAATCT-G--AAA-G----AGA---AAT-TAC--TCT-CA-AGTATCG-T-TAA-T---CC-CGTTGGAT-GAAC-TTT---C-AAA-A-C----T--CGT---T-----C-TGCA-T-A-------GT--CA--GTT---------T-CTACTTTTT-G-C-AAGCTTTC-GGA-AT-G-A-C----CA--CTTTG-TGA--GAT--AC-TAGTATgat
gi|13 : TAT-GCT-AAT-TT-CC---GCCGTAT-CA-C-TTTT--C-ATT-A-GA---T--CGT---T-----C-TGCA-T-A-------GT--CA--GTT---------TTCTACTTTTC-G-T-TAGCTTTC-GAG-ATGG-G-C----CA--C-TTG-TGA--GAT--ACATAATATA------T-------GTCAGAGGCGCGGAAcaag
gi|14 : aacttaatatcttgttcC-ACCT--GAAGTGTTGATT-GT-GT-TA----ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACC---------------TTCTCA-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAATGTGTTGGA---AAT-T
gi|15 : T-TA---TTC-AA-AATAT-G-T-GAT-TT-CCC-CGCTG-AT-CA-C-CTT---C-ATA-A-GTCATT--CAA---T-----C-TGCA-T-C-------ATGACA--ATT---------T-CTACTTTtaacaacattgttt
gi|16 : gccaataaatatgaataaactataggcctaatgatttATTAGTTG-TATTC----T-GTCA--TTTATTTCACCAGACC-CAAGCTTTTA-----CATCCAT---TGACAG--TTTTA-G-AAG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGT
gi|17 : AACAAACAGGAGGCTGCATACTTG--CTTTGAGACAGATTCATGGGATCTAAGTAATTTT---ACGGAAGAAAT
gi|18 : C-ACCT--GAAGTGTGGATT-TTTGT-AA----ACCCA-----------CCat
gi|2 : -CCC-CGCCG-ATACA-C-TTTTTTC-ATA-A-G----TTTCGCACTT-----C-TGCAAT-A-------GT--TATTATTAAAATAACCT-TTCCTTTTACG-C-AAACTTCTCAAATAT-G-A-CAGCGCA--C-CTG-TGA--GATTAAC-TAATATA------T-------GT-AAA-GTGCGC----------GT--AAAC-AACAATGGGCAG--TA---------AGAGGTCGGTT----------AAAC-----T---AGTGA-------T-CT------AGC--GCCGG-ATGGCTAATGTAAGTGCTAGCCTGGCT-TCGTTTCATTTCAATACGCC-CGA-TACCACTGAG-TGTATTAAGTGTTATTT----T-GTCA--TTTTTTCCAACAGACCTCAAAC-TCTAAATCCCACCCATTCATGACAGCCCCTTACACAGG-ACGGTTGTGACACTCCGCTATTTGAGAGCACGTCATCATCGAATTGACTC-TCAGTGTTCGCGCAGCCTCATCT
gi|2 : ctacatcatgtctataGAAAA-------TACCACGAGAAGCAAAAAGC---------------CGCGAGCTTTTTTTTTTCTACCACCAACACG--GTCGATCACCAGATTATTTCGAAAGCTTG-TTTGACAACATATTCTTTCTATAGAACTAGT--TA-AA-Acaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtgaaaataccacgagaagcaaaaagccgcgagcttttttttttctaccaccaacacggtcgatcaccagattatttcgaaagcttgtttgacaacatattctttctatagaactagttaaaagcaag
gi|3 : ctacatcatgtctataccccgccgatacacttttttcataagtttcgcacttctgcaatagttattattaaaataacctttccttttacgcaaacttctcaaatatgacagcgcacctgtgagattaactaatatatgtaaagtgcgcgtaaacaacaatgggcagtaagaggtcggttaaactagtgatctagcgccggatggctaatgtaagtgctagcctggcttcgtttcatttcaatacgcccgataccactgagtgtattaagtgttattttgtcattttttccaacagacctcaaactctaaatcccacccattcatgacagccccttacacaggacggttgtgacactccgctatttgagagcacgtcatcatcgaattgactctcagtgttcgcgcagcctcatctcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtT-ATA-AT-G-A-C----CA--C-TTG-TGA--GAC--AC-TAATATACATGTAT-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGT----TACCTG--CTTCGAGATCTATTT-CAAGGTACAATCAACTTT---ACTAACATAATTT-CTGTAATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ATC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTAATTCACCAAACC-CGAGCTTTTA-----CATCCAT---TGACAG--TCTTA-A-AGG-T-GGTTGTGATG--TCGCTATCTGAGA-CGCGTTATC--CA-ATTGGCTCGTCATTATTCGGAATGTCTCAGATTTTTTGGTACCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCCCGAG----TTTTTAAAGAAAACAAAAACGATGTCGATC--CAGAGTGTTTTGATAGCTTGTTTTGATAA-ATA--ATTTC-ATAGA--T-----------AAGAATGCTCATCTAAAGTATATAACTTCTAAA-AAGATTTAAAGTTTGAAACACGTTT----AGCAATCAAACTTTTGC-----GTTTTATTTATGCATGAACgcaag
gi|4 : T---ACTGAAAGAATTC-ATGTAATCAGC--ACATC-AT-GCTAATAT-AGTGCTA--TTTGTT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTT----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CTTCCAT---TGGCAA--CCTTA-A-AGG-A-GATCGTGACA--TCGCTATTTGAGA-CGCGTTATC--CG-ATTGGCTCGTAGGTATCCGGACGGTCTCAGCTTTTTGGGTAGCACTAAAGGGAAATACATTGTAC-ACGA------ATGAGCTTAACTTCTCAAAGGCGCGAG----TTTTGATAGAAAACAAAAAGGATGTCGATC--CAGATAATTTTGAAAGCTTATTTTGATAC-ATA--ATTTC-ATAGAATTAGT--TGTAACAAGAATGCTTATCT------------CTG--AA-AAGATTTAAATTTTGAAACACGTTTCTAAAGCAATCATACATGTGCATTTTATTTTATTTATGCATTGACGCGAGCCAATCG
gi|5 : GGC-ACCT--GAAGTGTGGTTT-TTTGT-AACAACACCCC-----------CCCCC-----------CCCCCCCACACACCACATTCT-T-AACGA-A-AT-TGC---ACTAAAA---TAA-TATAA--AAACG----ATA---AAT-TACTATCTTAATAATA--G-TAGAT-TT-CCCGCGAGG-AC-CA-C-TTT---C-ATA-A-G----T--CGT---T-----C-TGCA-T-A-------GT--TT--TTT---------TTCTACTTTTT-G-C-ATGCTGTT-GAA-AT-G-A-C----CA--C-TTG-TGA--GAG--AC-TAATATA------T-------GT-AAAGGTACGCAACAAAATATGT--AAACAAACAGTGGGC----TACCCG--CTTCAAAACTGAATCACAGGGTACAAACAACTTT---ATCAAAAGAATTT-CATTGATCA-------------------------GCTA--CTTGCC-TC-CTTCA-TCCTA---ACCATTAGTTTTA-TTAGTTTTATTAGTTG-TATTCGAAAT-ATC------ATTTCACTAGACC-TAAGCTTCTA-----CTTCCAC---TGACAG--CCTTA-A-Ag
gi|6 : AGGC-ACCT--GAAGTGTGA--C-TTTGT-TA-------TC-----------CTCCC-----------TC---------------TTTT-A-AA--A-A-ATATA----GAAAAAAATATAAATA-AA--AAACG----AGA---TAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CTC-TGCCG-AT-CA-C-TTC---C-CTA-A-G----T--CAA---T-----T-TGCA-T-ACAGTGTAGT--TA--GTT---------T-TTACTTTAA-G-C-AAACCTTT-AAA-AT-T-A-C----CG--C-TTG-TGA--TAT--AC-TAATACA------TTGTAAATGT-AAAGGTGCGCAACAAAATATGT--TAACAAACAGGAGGC----CACCTG--CTTTGAGGCCGATTCCCAAGGTACAAACAACTTT---ACTGAAATAATTT-TTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCC
gi|7 : ACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAGCTTT---ACTGAAAGAATTT-CTGTGATCAACCTGCTTCGAG-GCCGAT----GTGCTA--CTTGCT-TT-TATCA-TCCAA---ACC-CCC-TTCTA-TCA--TCCA--AACCC-CATAC----C-ATCAGTTTTATT-----AGACC-CGAGCTTGTA-----CATCCAT---TGACAG--TCTTA-A-AGG-A-GGTTGTGACA--TCGCTATTTGAGA-CACGtc
gi|8 : GGGGGG----TACCTGTACTTCGAGGCCGATT-ACAAGGTACAAACAACTTTTATACTGAATGAATTTTCT---ATTTGC------T-AA-GCAAATGT-AGTGCTA--CTTGCTGTG-CTTCAATCCAA----CC-CCA-TACCA-T-AGTTT-AT-AGTTG-TATTC----TGGTCG--TTTATTTCACTAGA-C-CGAGATTCTA-----CATCCAT---TGACAG--CCTTA-A-AGGAA-GGTTTTGACA--TCGATA
gi|9 : gAGGCCACCT--GAAGTG-GAATTGTTTG--------ACCCT-----------CCCCC-----------C----------------TTCT-A-AA--ACA-AT-TATTTTGAAAAAA---AGATTATAGTAAAACG----AGGCATAAT-TA---TCT-CC-AATAT-G-T--ATATT-CAC-CGCCG-AT-CA-C-TTC---CAATA-ATG----T--CGA---TATATAA-TGCA-TAA-------GT--TA---TT---------T-CTACTTCTA-GTC-AAGA--TT-AAATAT-GTATC----CAACT-TTG-TGATGGAT--AC-TAAAATa
Alignments
lowQualScore : 11111 22222222222 44444444444444444444444444444 111 1111111 1111 111 11 11111 1111 1111111 1111111 1111 111111111 1111 33333333333333 11 1111 11111111 1 1111 1111 11111 11 1 3333333 1 222222 4444444444444 2222 11 1 11 1 33333333 22 11 3333 33333
lowQualScore : 5 66 2 66 1 88888 11111111111 44444444444444444444444444444 111 66 5 5 4444444 0 888 4 66 0000 888 4 333 00 5 66 8888 4 444 8 4 4 22222 4 4 2222 55 8888 2222222 4 4 3333333 55 0000 666666666 4 55 4 4 4 8 4 4 4 8888 2222 8 55 55 4 11111111111111 6 11 7777 66 77 777 1 5 5 0 22222222 55 1 5 66 5 5 0 0000 5 5 5 3 1 0 0 5 0000 5 999 5 22222 888 66 5 5 666 77 6 33 0 2 1 1 1 1 2222222 0 888888 7777777777777 1111 1 3 33 1 3 0 33 0 77777777 6 7 00 88 0000 33333
lowQualScore : . .. . .. . ..... ........... ............................. ... .. . . ....... . ... . .. .... ... . ... .. . .. .... . ... . . . ..... . . .... .. .... ....... . . ....... .. .... ......... . .. . . . . . . . .... .... . .. .. . .............. . .. .... .. .. ... . . . . ........ .. . . .. . . . .... . . . . . . . . .... . ... . ..... ... .. . . ... .. . .. . . . . . . ....... . ...... ............. .... . . .. . . . .. . ........ . . .. .. .... .....
lowQualScore : 0 99 7 11 0 44444 11111111111 00000000000000000000000000000 000 99 0 0 0000000 2 888 1 99 6666 888 4 888 11 0 33 2222 4 666 0 0 0 22222 0 0 5555 55 0000 2222222 0 0 0000000 55 2222 000000000 0 44 4 4 0 0 0 0 0 5555 7777 0 55 55 0 88888888888888 7 00 5555 99 66 888 9 0 6 2 22222222 22 4 0 99 0 0 0 1111 7 7 7 0 4 1 1 0 6666 0 111 0 55555 888 99 0 0 111 99 7 88 0 5 0 2 0 0 5555555 0 888888 8888888888888 2222 0 2 88 0 2 0 88 0 00000000 8 3 00 33 7777 33333
consensus : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TTCCC-C-GCCG-AT-CA-CTTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTGTAANAAGAATGCTCATCTAAAGTATATAACCTC-GAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
Reference ( family-866 ) : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TTCCC-C-GCCG-AT-CA-CTTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGT--TAAAAAGAATGCTCATCTAAAGTATATAACCTC-AAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
gi|1 : AGGC-ACCT--GGAATGTGGATTGTT--GTTA----GCCCC-----------CCCCC-----------C-C---------------TTCT-C-AA--A-A-AT-TAT---GAAAAAA---TGAATATAA--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TTCCC-C-GTCG-AT-CA-CTTC---C-AAA-A-G----T--CGA---T-----C-TGTA-T-A-------GT--TA--G-TT---------T-ATACTTTTA-T-C-AAGCTTTT-AAA-AT-G-A-C----CA--T-TTG-TGA--GAT--AC-TAATA-A------T-------GT-AAAGGTGCGCAACAAAATATGTCTAAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAAAATCT-CTGTGTTCAGC--GCGTC-AT-CCTAATGT-AGTGCTA--CTTGAT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTA----T-GTCG--TTTATTTCACCAAACC-CGAGATTCTA-----CATTTAT---TGACAG--CCTTA-A-AGG-A-GGTTATGACA--TCGCTATCTGAGA-CGCATTATC--CG-ATTGGCTCGTCATTTTTCGGACTGTCTCAGCTTTTTTGGTAACACTAGAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTAAAGAAAACAATAACGATGTCGATC--CAGAGTATTTTAAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGA--TAGTTATAAGAAGAATGCTCATCTAAAGTATATAACCTC-AAAATAAGATATAAAGTTTGGAACACGTTT---AAGCAATTATACATGTGC-----GGTTTATTTATGCATGGACGCGAGCCAATCG
gi|10 : GC-ACCTACGAATTGTGGGTTTTTTTGTAA----ACCCC-----------TCCCT-----------CTC---------------CTGT-A-AA--A-A-AT--AT---GACAAAA---TAAGTATAG--AAACG----AAG---AATATA---TC--AA-AGTA--A-T-GAT-TTCCC-CCGTCA-AT-CG-CTTT---TTACACA-G----T--TGG---T-----TATGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-C-AAGCTTTT-AAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TA
gi|11 : C-ACCT--GACGTGTGGGTTTTT--GTAA----ACCCT-----------CCTCC-----------T-C---------------TCCT-GTAA--A-A-AT-AAT---GACAAAA---TAAGTATAG--AAACG----AGA---AAT-TA---TC--AA-AGTAT-G----AT-TTCCC-G-GTCA-AT-CG-CTTT---T-ACA-A-G----T--TGT---T-----A-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-CAAAGCTTTT-TAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TAga
gi|12 : AAGTGTGGATTT------CA------CAC-----------ACCCC-----------C-C---------------TTCT-C-AA--G-ATAT-GATC--GAACAAA---TAAATCT-G--AAA-G----AGA---AAT-TAC--TCT-CA-AGTATCG-T-TAA-T--CC-C-GTTGGAT-GAACTTT---C-AAA-A-C----T--CGT---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-C-AAGCTTTC-GGA-AT-G-A-C----CA--CTTTG-TGA--GAT--AC-TAGTATgat
gi|13 : TAT-GCT-AAT-TTCC----GCCGTAT-CA-CTTTT--C-ATT-A-GA---T--CGT---T-----C-TGCA-T-A-------GT--CA--GTTT---------T-CTACTTTTC-G-T-TAGCTTTC-GAG-ATGG-G-C----CA--C-TTG-TGA--GAT--ACATAATATA------T-------GTCAGAGGCGCGGAAcaag
gi|14 : aacttaatatcttgttcC-ACCT--GAAGTGTTGATTGT---GTTA----ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAC-C---------------TTCTCA-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAATGTGTTGGA---AAT-T
gi|15 : T-TA---TTC-AA-AATAT-G-T-GAT-TTCCC-C-GCTG-AT-CA-CCTT---C-ATA-A-GTCATT--CAA---T-----C-TGCA-T-C-------ATGACA--A-TT---------T-CTACTTTtaacaacattgttt
gi|16 : gccaataaatatgaataaactataggcctaatgatttATTAGTTG-TATTC----T-GTCA--TTTATTTCACCAGACC-CAAGCTTTTA-----CATCCAT---TGACAG--TTTTA-G-AAG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGT
gi|17 : AACAAACAGGAGGCTGCATACTTG--CTTTGAGACAGATTCATGGGATCTAAGTAATTTT---ACGGAAGAAAT
gi|18 : C-ACCT--GAAGTGTGGATTTTT--GTAA----ACCCA-----------CCat
gi|2 : CCC-C-GCCG-ATACA-CTTTTTTC-ATA-A-G----TTTCGCACTT-----C-TGCAAT-A-------GT--TATTA-TTAAAATAACCT-TTCCTTTTACG-C-AAACTTCTCAAATAT-G-A-CAGCGCA--C-CTG-TGA--GATTAAC-TAATATA------T-------GT-AAA-GTGCGC----------GT--AAAC-AACAATGGGCAG--TA---------AGAGGTCGGTT----------AAAC-----T---AGTGA-------T-CT------AGC--GCCGG-ATGGCTAATGTAAGTGCTAGCCTGGCT-TCGTTTCATTTCAATACGCC-CGA-TACCACTGAG-TGTATTAAGTGTTATTT----T-GTCA--TTTTTTCCAACAGACCTCAAAC-TCTAAATCCCACCCATTCATGACAGCCCCTTACACAGG-ACGGTTGTGACACTCCGCTATTTGAGAGCACGTCATCATCGAATTGACTC-TCAGTGTTCGCGCAGCCTCATCT
gi|2 : ctacatcatgtctataGAAAA-------TACCACGAGAAGCAAAAAGC---------------CGCGAGCTTTTTTTTTTCTACCACCAACACG--GTCGATCACCAGATTATTTCGAAAGCTTG-TTTGACAACATATTCTTTCTATAGAACTAGT--TAAAAcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtgaaaataccacgagaagcaaaaagccgcgagcttttttttttctaccaccaacacggtcgatcaccagattatttcgaaagcttgtttgacaacatattctttctatagaactagttaaaagcaag
gi|3 : ctacatcatgtctataccccgccgatacacttttttcataagtttcgcacttctgcaatagttattattaaaataacctttccttttacgcaaacttctcaaatatgacagcgcacctgtgagattaactaatatatgtaaagtgcgcgtaaacaacaatgggcagtaagaggtcggttaaactagtgatctagcgccggatggctaatgtaagtgctagcctggcttcgtttcatttcaatacgcccgataccactgagtgtattaagtgttattttgtcattttttccaacagacctcaaactctaaatcccacccattcatgacagccccttacacaggacggttgtgacactccgctatttgagagcacgtcatcatcgaattgactctcagtgttcgcgcagcctcatctcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtT-ATA-AT-G-A-C----CA--C-TTG-TGA--GAC--AC-TAATATACATGTAT-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGT----TACCTG--CTTCGAGATCTATTT-CAAGGTACAATCAACTTT---ACTAACATAATTT-CTGTAATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ATC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTAATTCACCAAACC-CGAGCTTTTA-----CATCCAT---TGACAG--TCTTA-A-AGG-T-GGTTGTGATG--TCGCTATCTGAGA-CGCGTTATC--CA-ATTGGCTCGTCATTATTCGGAATGTCTCAGATTTTTTGGTACCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCCCGAG----TTTTTAAAGAAAACAAAAACGATGTCGATC--CAGAGTGTTTTGATAGCTTGTTTTGATAA-ATA--ATTTC-ATAGA--T---------AAGAATGCTCATCTAAAGTATATAACTTCTAAA--AAGATTTAAAGTTTGAAACACGTTT----AGCAATCAAACTTTTGC-----GTTTTATTTATGCATGAACgcaag
gi|4 : T---ACTGAAAGAATTC-ATGTAATCAGC--ACATC-AT-GCTAATAT-AGTGCTA--TTTGTT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTT----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CTTCCAT---TGGCAA--CCTTA-A-AGG-A-GATCGTGACA--TCGCTATTTGAGA-CGCGTTATC--CG-ATTGGCTCGTAGGTATCCGGACGGTCTCAGCTTTTTGGGTAGCACTAAAGGGAAATACATTGTAC-ACGA------ATGAGCTTAACTTCTCAAAGGCGCGAG----TTTTGATAGAAAACAAAAAGGATGTCGATC--CAGATAATTTTGAAAGCTTATTTTGATAC-ATA--ATTTC-ATAGAATTAGTTGTAACAAGAATGCTTATCT------------CT--GAA--AAGATTTAAATTTTGAAACACGTTTCTAAAGCAATCATACATGTGCATTTTATTTTATTTATGCATTGACGCGAGCCAATCG
gi|5 : GGC-ACCT--GAAGTGTGGTTTTTT--GTAACAACACCCC-----------CCCCC-----------C-CCCCCCACACACCACATTCT-T-AACGA-A-AT-TGC---ACTAAAA---TAA-TATAA--AAACG----ATA---AAT-TACTATCTTAATAATA--G-TAGAT-TTCCCGC-GAGG-AC-CA-CTTT---C-ATA-A-G----T--CGT---T-----C-TGCA-T-A-------GT--TT--T-TT---------TTCTACTTTTT-G-C-ATGCTGTT-GAA-AT-G-A-C----CA--C-TTG-TGA--GAG--AC-TAATATA------T-------GT-AAAGGTACGCAACAAAATATGT--AAACAAACAGTGGGC----TACCCG--CTTCAAAACTGAATCACAGGGTACAAACAACTTT---ATCAAAAGAATTT-CATTGATCA-------------------------GCTA--CTTGCC-TC-CTTCA-TCCTA---ACCATTAGTTTTA-TTAGTTTTATTAGTTG-TATTCGAAAT-ATC------ATTTCACTAGACC-TAAGCTTCTA-----CTTCCAC---TGACAG--CCTTA-A-Ag
gi|6 : AGGC-ACCT--GAAGTGTGA--CTTT--GTTA-------TC-----------CTCCC-----------T-C---------------TTTT-A-AA--A-A-ATATA----GAAAAAAATATAAATA-AA--AAACG----AGA---TAT-TA---TCT-AA-AATAT-G-T-GAT-TTCTC-T-GCCG-AT-CA-CTTC---C-CTA-A-G----T--CAA---T-----T-TGCA-T-ACAGTGTAGT--TA--G-TT---------T-TTACTTTAA-G-C-AAACCTTT-AAA-AT-T-A-C----CG--C-TTG-TGA--TAT--AC-TAATACA------TTGTAAATGT-AAAGGTGCGCAACAAAATATGT--TAACAAACAGGAGGC----CACCTG--CTTTGAGGCCGATTCCCAAGGTACAAACAACTTT---ACTGAAATAATTT-TTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCC
gi|7 : ACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAGCTTT---ACTGAAAGAATTT-CTGTGATCAACCTGCTTCGAG-GCCGAT----GTGCTA--CTTGCT-TT-TATCA-TCCAA---ACC-CCC-TTCTA-TCA--TCCA--AACCC-CATAC----C-ATCAGTTTTATT-----AGACC-CGAGCTTGTA-----CATCCAT---TGACAG--TCTTA-A-AGG-A-GGTTGTGACA--TCGCTATTTGAGA-CACGtc
gi|8 : GGGGGG----TACCTGTACTTCGAGGCCGATT-ACAAGGTACAAACAACTTTTATACTGAATGAATTTTCT---ATTTGC------T-AA-GCAAATGT-AGTGCTA--CTTGCTGTG-CTTCAATCCAA----CC-CCA-TACCA-T-AGTTT-AT-AGTTG-TATTC----TGGTCG--TTTATTTCACTAGA-C-CGAGATTCTA-----CATCCAT---TGACAG--CCTTA-A-AGGAA-GGTTTTGACA--TCGATA
gi|9 : gAGGCCACCT--GAAGTG-GAATTGTT---TGA------CCC-----------TCCCC-----------C-C---------------TTCT-A-AA--ACA-AT-TATTTTGAAAAAA---AGATTATAGTAAAACG----AGGCATAAT-TA---TCT-CC-AATAT-G-T--ATATTCAC-C-GCCG-AT-CA-CTTC---CAATA-ATG----T--CGA---TATATAA-TGCA-TAA-------GT--TA----TT---------T-CTACTTCTA-GTC-AAGA--TT-AAATAT-GTATC----CAACT-TTG-TGATGGAT--AC-TAAAATa
Alignments
lowQualScore : 11111 22222222222 44444444444444444444444444444 111 1111111 1111 111 11 111 1111 1111111 1111111 1111 111111111 1111 33333333333333 11 1111 11111111 1 1111 1111 11111 11 1 3333333 1 222222 4444444444444 2222 11 1 11 1 22222222222 2222222 3333 33333
lowQualScore : 5 66 2 66 1 88888 11111111111 44444444444444444444444444444 111 66 5 5 4444444 0 888 4 66 0000 888 4 333 00 5 66 8888 4 4 4 8 4 4 4 111 4 4 4 2222 55 8888 2222222 4 4 3333333 55 0000 666666666 4 55 4 4 4 8 4 4 4 8888 2222 8 55 55 4 11111111111111 6 11 7777 66 77 777 1 5 5 0 22222222 55 1 5 66 5 5 0 0000 5 5 5 3 1 0 0 5 0000 5 999 5 22222 888 66 5 5 666 77 6 33 0 2 1 1 1 1 2222222 0 888888 7777777777777 1111 1 3 33 1 3 0 33 0 22222222222 1 7 1111111 0000 33333
lowQualScore : . .. . .. . ..... ........... ............................. ... .. . . ....... . ... . .. .... ... . ... .. . .. .... . . . . . . . ... . . . .... .. .... ....... . . ....... .. .... ......... . .. . . . . . . . .... .... . .. .. . .............. . .. .... .. .. ... . . . . ........ .. . . .. . . . .... . . . . . . . . .... . ... . ..... ... .. . . ... .. . .. . . . . . . ....... . ...... ............. .... . . .. . . . .. . ........... . . ....... .... .....
lowQualScore : 0 99 7 11 0 44444 11111111111 00000000000000000000000000000 000 99 0 0 0000000 2 888 1 99 6666 888 4 888 11 0 33 2222 4 0 0 0 0 0 0 000 0 0 0 5555 55 0000 2222222 0 0 0000000 55 2222 000000000 0 44 4 4 0 0 0 0 0 5555 7777 0 55 55 0 88888888888888 7 00 5555 99 66 888 9 0 6 2 22222222 22 4 0 99 0 0 0 1111 7 7 7 0 4 1 1 0 6666 0 111 0 55555 888 99 0 0 111 99 7 88 0 5 0 2 0 0 5555555 0 888888 8888888888888 2222 0 2 88 0 2 0 88 0 00000000000 0 3 0000000 7777 33333
consensus : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTGTAANAAGAATGCTCATCTAAAGTATATAACCTC-GAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
Reference ( family-866 ) : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTGTAANAAGAATGCTCATCTAAAGTATATAACCTC-GAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
gi|1 : AGGC-ACCT--GGAATGTGGATTGTT--GTTA----GCCCC-----------CCCCC-----------C-C---------------TTCT-C-AA--A-A-AT-TAT---GAAAAAA---TGAATATAA--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGTCG-AT-CA-C-TTC---C-AAA-A-G----T--CGA---T-----C-TGTA-T-A-------GT--TA--G-TT---------T-ATACTTTTA-T-C-AAGCTTTT-AAA-AT-G-A-C----CA--T-TTG-TGA--GAT--AC-TAATA-A------T-------GT-AAAGGTGCGCAACAAAATATGTCTAAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAAAATCT-CTGTGTTCAGC--GCGTC-AT-CCTAATGT-AGTGCTA--CTTGAT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTA----T-GTCG--TTTATTTCACCAAACC-CGAGATTCTA-----CATTTAT---TGACAG--CCTTA-A-AGG-A-GGTTATGACA--TCGCTATCTGAGA-CGCATTATC--CG-ATTGGCTCGTCATTTTTCGGACTGTCTCAGCTTTTTTGGTAACACTAGAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTAAAGAAAACAATAACGATGTCGATC--CAGAGTATTTTAAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGA--TAGTTATAAGAAGAATGCTCATCTAAAGTATATAACCTC-AAAATAAGATATAAAGTTTGGAACACGTTT---AAGCAATTATACATGTGC-----GGTTTATTTATGCATGGACGCGAGCCAATCG
gi|10 : GC-ACCTACGAATTGTGGGTTTTTTTGTAA----ACCCC-----------TCCCT-----------CTC---------------CTGT-A-AA--A-A-AT--AT---GACAAAA---TAAGTATAG--AAACG----AAG---AATATA---TC--AA-AGTA--A-T-GAT-TTCCCC-CGTCA-AT-CG-CTTTT---T-ACACA-G----T--TGG---T-----TATGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-C-AAGCTTTT-AAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TA
gi|11 : C-ACCT--GACGTGTGGGTTTTT--GTAA----ACCCT-----------CCTCC-----------T-C---------------TCCT-GTAA--A-A-AT-AAT---GACAAAA---TAAGTATAG--AAACG----AGA---AAT-TA---TC--AA-AGTAT-G----AT-TT-CCC-GGTCA-AT-CG-C-TTT---T-ACA-A-G----T--TGT---T-----A-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-CAAAGCTTTT-TAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TAga
gi|12 : AAGTGTGGATTT------CA------CAC-----------ACCCC-----------C-C---------------TTCT-C-AA--G-ATAT-GATC--GAACAAA---TAAATCT-G--AAA-G----AGA---AAT-TAC--TCT-CA-AGTATCG-T-TAA-T---CC-CGTTGGAT-GAAC-TTT---C-AAA-A-C----T--CGT---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-C-AAGCTTTC-GGA-AT-G-A-C----CA--CTTTG-TGA--GAT--AC-TAGTATgat
gi|13 : TAT-GCT-AAT-TT-CC---GCCGTAT-CA-C-TTTT--C-ATT-A-GA---T--CGT---T-----C-TGCA-T-A-------GT--CA--GTTT---------T-CTACTTTTC-G-T-TAGCTTTC-GAG-ATGG-G-C----CA--C-TTG-TGA--GAT--ACATAATATA------T-------GTCAGAGGCGCGGAAcaag
gi|14 : aacttaatatcttgttcC-ACCT--GAAGTGTTGATTGT---GTTA----ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAC-C---------------TTCTCA-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAATGTGTTGGA---AAT-T
gi|15 : T-TA---TTC-AA-AATAT-G-T-GAT-TT-CCC-CGCTG-AT-CA-C-CTT---C-ATA-A-GTCATT--CAA---T-----C-TGCA-T-C-------ATGACA--A-TT---------T-CTACTTTtaacaacattgttt
gi|16 : gccaataaatatgaataaactataggcctaatgatttATTAGTTG-TATTC----T-GTCA--TTTATTTCACCAGACC-CAAGCTTTTA-----CATCCAT---TGACAG--TTTTA-G-AAG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGT
gi|17 : AACAAACAGGAGGCTGCATACTTG--CTTTGAGACAGATTCATGGGATCTAAGTAATTTT---ACGGAAGAAAT
gi|18 : C-ACCT--GAAGTGTGGATTTTT--GTAA----ACCCA-----------CCat
gi|2 : -CCC-CGCCG-ATACA-C-TTTTTTC-ATA-A-G----TTTCGCACTT-----C-TGCAAT-A-------GT--TATTA-TTAAAATAACCT-TTCCTTTTACG-C-AAACTTCTCAAATAT-G-A-CAGCGCA--C-CTG-TGA--GATTAAC-TAATATA------T-------GT-AAA-GTGCGC----------GT--AAAC-AACAATGGGCAG--TA---------AGAGGTCGGTT----------AAAC-----T---AGTGA-------T-CT------AGC--GCCGG-ATGGCTAATGTAAGTGCTAGCCTGGCT-TCGTTTCATTTCAATACGCC-CGA-TACCACTGAG-TGTATTAAGTGTTATTT----T-GTCA--TTTTTTCCAACAGACCTCAAAC-TCTAAATCCCACCCATTCATGACAGCCCCTTACACAGG-ACGGTTGTGACACTCCGCTATTTGAGAGCACGTCATCATCGAATTGACTC-TCAGTGTTCGCGCAGCCTCATCT
gi|2 : ctacatcatgtctataGAAAA-------TACCACGAGAAGCAAAAAGC---------------CGCGAGCTTTTTTTTTTCTACCACCAACACG--GTCGATCACCAGATTATTTCGAAAGCTTG-TTTGACAACATATTCTTTCTATAGAACTAGTT---AAAAGcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtgaaaataccacgagaagcaaaaagccgcgagcttttttttttctaccaccaacacggtcgatcaccagattatttcgaaagcttgtttgacaacatattctttctatagaactagttaaaagcaag
gi|3 : ctacatcatgtctataccccgccgatacacttttttcataagtttcgcacttctgcaatagttattattaaaataacctttccttttacgcaaacttctcaaatatgacagcgcacctgtgagattaactaatatatgtaaagtgcgcgtaaacaacaatgggcagtaagaggtcggttaaactagtgatctagcgccggatggctaatgtaagtgctagcctggcttcgtttcatttcaatacgcccgataccactgagtgtattaagtgttattttgtcattttttccaacagacctcaaactctaaatcccacccattcatgacagccccttacacaggacggttgtgacactccgctatttgagagcacgtcatcatcgaattgactctcagtgttcgcgcagcctcatctcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtT-ATA-AT-G-A-C----CA--C-TTG-TGA--GAC--AC-TAATATACATGTAT-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGT----TACCTG--CTTCGAGATCTATTT-CAAGGTACAATCAACTTT---ACTAACATAATTT-CTGTAATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ATC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTAATTCACCAAACC-CGAGCTTTTA-----CATCCAT---TGACAG--TCTTA-A-AGG-T-GGTTGTGATG--TCGCTATCTGAGA-CGCGTTATC--CA-ATTGGCTCGTCATTATTCGGAATGTCTCAGATTTTTTGGTACCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCCCGAG----TTTTTAAAGAAAACAAAAACGATGTCGATC--CAGAGTGTTTTGATAGCTTGTTTTGATAA-ATA--ATTTC-ATAG-----------ATAAGAATGCTCATCTAAAGTATATAACTTCTAAA--AAGATTTAAAGTTTGAAACACGTTT----AGCAATCAAACTTTTGC-----GTTTTATTTATGCATGAACcaag
gi|4 : T---ACTGAAAGAATTC-ATGTAATCAGC--ACATC-AT-GCTAATAT-AGTGCTA--TTTGTT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTT----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CTTCCAT---TGGCAA--CCTTA-A-AGG-A-GATCGTGACA--TCGCTATTTGAGA-CGCGTTATC--CG-ATTGGCTCGTAGGTATCCGGACGGTCTCAGCTTTTTGGGTAGCACTAAAGGGAAATACATTGTAC-ACGA------ATGAGCTTAACTTCTCAAAGGCGCGAG----TTTTGATAGAAAACAAAAAGGATGTCGATC--CAGATAATTTTGAAAGCTTATTTTGATAC-ATA--ATTTC-ATAGAATTAGTTGTAACAAGAATGCTTATCT------------CT--GAA--AAGATTTAAATTTTGAAACACGTTTCTAAAGCAATCATACATGTGCATTTTATTTTATTTATGCATTGACGCGAGCCAATCG
gi|5 : GGC-ACCT--GAAGTGTGGTTTTTT--GTAACAACACCCC-----------CCCCC-----------C-CCCCCCACACACCACATTCT-T-AACGA-A-AT-TGC---ACTAAAA---TAA-TATAA--AAACG----ATA---AAT-TACTATCTTAATAATA--G-TAGAT-TT-CCCGCGAGG-AC-CA-C-TTT---C-ATA-A-G----T--CGT---T-----C-TGCA-T-A-------GT--TT--T-TT---------TTCTACTTTTT-G-C-ATGCTGTT-GAA-AT-G-A-C----CA--C-TTG-TGA--GAG--AC-TAATATA------T-------GT-AAAGGTACGCAACAAAATATGT--AAACAAACAGTGGGC----TACCCG--CTTCAAAACTGAATCACAGGGTACAAACAACTTT---ATCAAAAGAATTT-CATTGATCA-------------------------GCTA--CTTGCC-TC-CTTCA-TCCTA---ACCATTAGTTTTA-TTAGTTTTATTAGTTG-TATTCGAAAT-ATC------ATTTCACTAGACC-TAAGCTTCTA-----CTTCCAC---TGACAG--CCTTA-A-Ag
gi|6 : AGGC-ACCT--GAAGTGTGA--CTTT--GTTA-------TC-----------CTCCC-----------T-C---------------TTTT-A-AA--A-A-ATATA----GAAAAAAATATAAATA-AA--AAACG----AGA---TAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CTC-TGCCG-AT-CA-C-TTC---C-CTA-A-G----T--CAA---T-----T-TGCA-T-ACAGTGTAGT--TA--G-TT---------T-TTACTTTAA-G-C-AAACCTTT-AAA-AT-T-A-C----CG--C-TTG-TGA--TAT--AC-TAATACA------TTGTAAATGT-AAAGGTGCGCAACAAAATATGT--TAACAAACAGGAGGC----CACCTG--CTTTGAGGCCGATTCCCAAGGTACAAACAACTTT---ACTGAAATAATTT-TTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCC
gi|7 : ACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAGCTTT---ACTGAAAGAATTT-CTGTGATCAACCTGCTTCGAG-GCCGAT----GTGCTA--CTTGCT-TT-TATCA-TCCAA---ACC-CCC-TTCTA-TCA--TCCA--AACCC-CATAC----C-ATCAGTTTTATT-----AGACC-CGAGCTTGTA-----CATCCAT---TGACAG--TCTTA-A-AGG-A-GGTTGTGACA--TCGCTATTTGAGA-CACGtc
gi|8 : GGGGGG----TACCTGTACTTCGAGGCCGATT-ACAAGGTACAAACAACTTTTATACTGAATGAATTTTCT---ATTTGC------T-AA-GCAAATGT-AGTGCTA--CTTGCTGTG-CTTCAATCCAA----CC-CCA-TACCA-T-AGTTT-AT-AGTTG-TATTC----TGGTCG--TTTATTTCACTAGA-C-CGAGATTCTA-----CATCCAT---TGACAG--CCTTA-A-AGGAA-GGTTTTGACA--TCGATA
gi|9 : gAGGCCACCT--GAAGTG-GAATTGTT---TGA------CCC-----------TCCCC-----------C-C---------------TTCT-A-AA--ACA-AT-TATTTTGAAAAAA---AGATTATAGTAAAACG----AGGCATAAT-TA---TCT-CC-AATAT-G-T--ATATT-CAC-CGCCG-AT-CA-C-TTC---CAATA-ATG----T--CGA---TATATAA-TGCA-TAA-------GT--TA----TT---------T-CTACTTCTA-GTC-AAGA--TT-AAATAT-GTATC----CAACT-TTG-TGATGGAT--AC-TAAAATa
Alignments
lowQualScore : 11111 22222222222 44444444444444444444444444444 111 1111111 1111 111 11 111 1111 1111111 1111111 1111 111111111 1111 33333333333333 11 1111 11111111 1 1111 1111 11111 11 1 3333333 1 222222 4444444444444 2222 11 1 11 1 22222222222 2222222 3333 33333
lowQualScore : 5 66 2 66 1 88888 11111111111 44444444444444444444444444444 111 66 5 5 4444444 0 888 4 66 0000 888 4 333 00 5 66 8888 4 4 4 8 4 4 4 111 4 4 4 2222 55 8888 2222222 4 4 3333333 55 0000 666666666 4 55 4 4 4 8 4 4 4 8888 2222 8 55 55 4 11111111111111 6 11 7777 66 77 777 1 5 5 0 22222222 55 1 5 66 5 5 0 0000 5 5 5 3 1 0 0 5 0000 5 999 5 22222 888 66 5 5 666 77 6 33 0 2 1 1 1 1 2222222 0 888888 7777777777777 1111 1 3 33 1 3 0 33 0 22222222222 1 7 1111111 0000 33333
lowQualScore : . .. . .. . ..... ........... ............................. ... .. . . ....... . ... . .. .... ... . ... .. . .. .... . . . . . . . ... . . . .... .. .... ....... . . ....... .. .... ......... . .. . . . . . . . .... .... . .. .. . .............. . .. .... .. .. ... . . . . ........ .. . . .. . . . .... . . . . . . . . .... . ... . ..... ... .. . . ... .. . .. . . . . . . ....... . ...... ............. .... . . .. . . . .. . ........... . . ....... .... .....
lowQualScore : 0 99 7 11 0 44444 11111111111 00000000000000000000000000000 000 99 0 0 0000000 2 888 1 99 6666 888 4 888 11 0 33 2222 4 0 0 0 0 0 0 000 0 0 0 5555 55 0000 2222222 0 0 0000000 55 2222 000000000 0 44 4 4 0 0 0 0 0 5555 7777 0 55 55 0 88888888888888 7 00 5555 99 66 888 9 0 6 2 22222222 22 4 0 99 0 0 0 1111 7 7 7 0 4 1 1 0 6666 0 111 0 55555 888 99 0 0 111 99 7 88 0 5 0 2 0 0 5555555 0 888888 8888888888888 2222 0 2 88 0 2 0 88 0 00000000000 0 3 0000000 7777 33333
consensus : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTGTAANAAGAATGCTCATCTAAAGTATATAACCTC-GAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
Reference ( family-866 ) : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTGTAANAAGAATGCTCATCTAAAGTATATAACCTC-GAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
gi|1 : AGGC-ACCT--GGAATGTGGATTGTT--GTTA----GCCCC-----------CCCCC-----------C-C---------------TTCT-C-AA--A-A-AT-TAT---GAAAAAA---TGAATATAA--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGTCG-AT-CA-C-TTC---C-AAA-A-G----T--CGA---T-----C-TGTA-T-A-------GT--TA--G-TT---------T-ATACTTTTA-T-C-AAGCTTTT-AAA-AT-G-A-C----CA--T-TTG-TGA--GAT--AC-TAATA-A------T-------GT-AAAGGTGCGCAACAAAATATGTCTAAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAAAATCT-CTGTGTTCAGC--GCGTC-AT-CCTAATGT-AGTGCTA--CTTGAT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTA----T-GTCG--TTTATTTCACCAAACC-CGAGATTCTA-----CATTTAT---TGACAG--CCTTA-A-AGG-A-GGTTATGACA--TCGCTATCTGAGA-CGCATTATC--CG-ATTGGCTCGTCATTTTTCGGACTGTCTCAGCTTTTTTGGTAACACTAGAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTAAAGAAAACAATAACGATGTCGATC--CAGAGTATTTTAAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGA--TAGTTATAAGAAGAATGCTCATCTAAAGTATATAACCTC-AAAATAAGATATAAAGTTTGGAACACGTTT---AAGCAATTATACATGTGC-----GGTTTATTTATGCATGGACGCGAGCCAATCG
gi|10 : GC-ACCTACGAATTGTGGGTTTTTTTGTAA----ACCCC-----------TCCCT-----------CTC---------------CTGT-A-AA--A-A-AT--AT---GACAAAA---TAAGTATAG--AAACG----AAG---AATATA---TC--AA-AGTA--A-T-GAT-TTCCCC-CGTCA-AT-CG-CTTTT---T-ACACA-G----T--TGG---T-----TATGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-C-AAGCTTTT-AAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TA
gi|11 : C-ACCT--GACGTGTGGGTTTTT--GTAA----ACCCT-----------CCTCC-----------T-C---------------TCCT-GTAA--A-A-AT-AAT---GACAAAA---TAAGTATAG--AAACG----AGA---AAT-TA---TC--AA-AGTAT-G----AT-TT-CCC-GGTCA-AT-CG-C-TTT---T-ACA-A-G----T--TGT---T-----A-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-CAAAGCTTTT-TAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TAga
gi|12 : AAGTGTGGATTT------CA------CAC-----------ACCCC-----------C-C---------------TTCT-C-AA--G-ATAT-GATC--GAACAAA---TAAATCT-G--AAA-G----AGA---AAT-TAC--TCT-CA-AGTATCG-T-TAA-T---CC-CGTTGGAT-GAAC-TTT---C-AAA-A-C----T--CGT---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-C-AAGCTTTC-GGA-AT-G-A-C----CA--CTTTG-TGA--GAT--AC-TAGTATgat
gi|13 : TAT-GCT-AAT-TT-CC---GCCGTAT-CA-C-TTTT--C-ATT-A-GA---T--CGT---T-----C-TGCA-T-A-------GT--CA--GTTT---------T-CTACTTTTC-G-T-TAGCTTTC-GAG-ATGG-G-C----CA--C-TTG-TGA--GAT--ACATAATATA------T-------GTCAGAGGCGCGGAAcaag
gi|14 : aacttaatatcttgttcC-ACCT--GAAGTGTTGATTGT---GTTA----ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAC-C---------------TTCTCA-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAATGTGTTGGA---AAT-T
gi|15 : T-TA---TTC-AA-AATAT-G-T-GAT-TT-CCC-CGCTG-AT-CA-C-CTT---C-ATA-A-GTCATT--CAA---T-----C-TGCA-T-C-------ATGACA--A-TT---------T-CTACTTTtaacaacattgttt
gi|16 : gccaataaatatgaataaactataggcctaatgatttATTAGTTG-TATTC----T-GTCA--TTTATTTCACCAGACC-CAAGCTTTTA-----CATCCAT---TGACAG--TTTTA-G-AAG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGT
gi|17 : AACAAACAGGAGGCTGCATACTTG--CTTTGAGACAGATTCATGGGATCTAAGTAATTTT---ACGGAAGAAAT
gi|18 : C-ACCT--GAAGTGTGGATTTTT--GTAA----ACCCA-----------CCat
gi|2 : -CCC-CGCCG-ATACA-C-TTTTTTC-ATA-A-G----TTTCGCACTT-----C-TGCAAT-A-------GT--TATTA-TTAAAATAACCT-TTCCTTTTACG-C-AAACTTCTCAAATAT-G-A-CAGCGCA--C-CTG-TGA--GATTAAC-TAATATA------T-------GT-AAA-GTGCGC----------GT--AAAC-AACAATGGGCAG--TA---------AGAGGTCGGTT----------AAAC-----T---AGTGA-------T-CT------AGC--GCCGG-ATGGCTAATGTAAGTGCTAGCCTGGCT-TCGTTTCATTTCAATACGCC-CGA-TACCACTGAG-TGTATTAAGTGTTATTT----T-GTCA--TTTTTTCCAACAGACCTCAAAC-TCTAAATCCCACCCATTCATGACAGCCCCTTACACAGG-ACGGTTGTGACACTCCGCTATTTGAGAGCACGTCATCATCGAATTGACTC-TCAGTGTTCGCGCAGCCTCATCT
gi|2 : ctacatcatgtctataGAAAA-------TACCACGAGAAGCAAAAAGC---------------CGCGAGCTTTTTTTTTTCTACCACCAACACG--GTCGATCACCAGATTATTTCGAAAGCTTG-TTTGACAACATATTCTTTCTATAGAACTAGTT---AAAAGcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtgaaaataccacgagaagcaaaaagccgcgagcttttttttttctaccaccaacacggtcgatcaccagattatttcgaaagcttgtttgacaacatattctttctatagaactagttaaaagcaag
gi|3 : ctacatcatgtctataccccgccgatacacttttttcataagtttcgcacttctgcaatagttattattaaaataacctttccttttacgcaaacttctcaaatatgacagcgcacctgtgagattaactaatatatgtaaagtgcgcgtaaacaacaatgggcagtaagaggtcggttaaactagtgatctagcgccggatggctaatgtaagtgctagcctggcttcgtttcatttcaatacgcccgataccactgagtgtattaagtgttattttgtcattttttccaacagacctcaaactctaaatcccacccattcatgacagccccttacacaggacggttgtgacactccgctatttgagagcacgtcatcatcgaattgactctcagtgttcgcgcagcctcatctcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtT-ATA-AT-G-A-C----CA--C-TTG-TGA--GAC--AC-TAATATACATGTAT-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGT----TACCTG--CTTCGAGATCTATTT-CAAGGTACAATCAACTTT---ACTAACATAATTT-CTGTAATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ATC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTAATTCACCAAACC-CGAGCTTTTA-----CATCCAT---TGACAG--TCTTA-A-AGG-T-GGTTGTGATG--TCGCTATCTGAGA-CGCGTTATC--CA-ATTGGCTCGTCATTATTCGGAATGTCTCAGATTTTTTGGTACCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCCCGAG----TTTTTAAAGAAAACAAAAACGATGTCGATC--CAGAGTGTTTTGATAGCTTGTTTTGATAA-ATA--ATTTC-ATAG-----------ATAAGAATGCTCATCTAAAGTATATAACTTCTAAA--AAGATTTAAAGTTTGAAACACGTTT----AGCAATCAAACTTTTGC-----GTTTTATTTATGCATGAACcaag
gi|4 : T---ACTGAAAGAATTC-ATGTAATCAGC--ACATC-AT-GCTAATAT-AGTGCTA--TTTGTT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTT----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CTTCCAT---TGGCAA--CCTTA-A-AGG-A-GATCGTGACA--TCGCTATTTGAGA-CGCGTTATC--CG-ATTGGCTCGTAGGTATCCGGACGGTCTCAGCTTTTTGGGTAGCACTAAAGGGAAATACATTGTAC-ACGA------ATGAGCTTAACTTCTCAAAGGCGCGAG----TTTTGATAGAAAACAAAAAGGATGTCGATC--CAGATAATTTTGAAAGCTTATTTTGATAC-ATA--ATTTC-ATAGAATTAGTTGTAACAAGAATGCTTATCT------------CT--GAA--AAGATTTAAATTTTGAAACACGTTTCTAAAGCAATCATACATGTGCATTTTATTTTATTTATGCATTGACGCGAGCCAATCG
gi|5 : GGC-ACCT--GAAGTGTGGTTTTTT--GTAACAACACCCC-----------CCCCC-----------C-CCCCCCACACACCACATTCT-T-AACGA-A-AT-TGC---ACTAAAA---TAA-TATAA--AAACG----ATA---AAT-TACTATCTTAATAATA--G-TAGAT-TT-CCCGCGAGG-AC-CA-C-TTT---C-ATA-A-G----T--CGT---T-----C-TGCA-T-A-------GT--TT--T-TT---------TTCTACTTTTT-G-C-ATGCTGTT-GAA-AT-G-A-C----CA--C-TTG-TGA--GAG--AC-TAATATA------T-------GT-AAAGGTACGCAACAAAATATGT--AAACAAACAGTGGGC----TACCCG--CTTCAAAACTGAATCACAGGGTACAAACAACTTT---ATCAAAAGAATTT-CATTGATCA-------------------------GCTA--CTTGCC-TC-CTTCA-TCCTA---ACCATTAGTTTTA-TTAGTTTTATTAGTTG-TATTCGAAAT-ATC------ATTTCACTAGACC-TAAGCTTCTA-----CTTCCAC---TGACAG--CCTTA-A-Ag
gi|6 : AGGC-ACCT--GAAGTGTGA--CTTT--GTTA-------TC-----------CTCCC-----------T-C---------------TTTT-A-AA--A-A-ATATA----GAAAAAAATATAAATA-AA--AAACG----AGA---TAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CTC-TGCCG-AT-CA-C-TTC---C-CTA-A-G----T--CAA---T-----T-TGCA-T-ACAGTGTAGT--TA--G-TT---------T-TTACTTTAA-G-C-AAACCTTT-AAA-AT-T-A-C----CG--C-TTG-TGA--TAT--AC-TAATACA------TTGTAAATGT-AAAGGTGCGCAACAAAATATGT--TAACAAACAGGAGGC----CACCTG--CTTTGAGGCCGATTCCCAAGGTACAAACAACTTT---ACTGAAATAATTT-TTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCC
gi|7 : ACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAGCTTT---ACTGAAAGAATTT-CTGTGATCAACCTGCTTCGAG-GCCGAT----GTGCTA--CTTGCT-TT-TATCA-TCCAA---ACC-CCC-TTCTA-TCA--TCCA--AACCC-CATAC----C-ATCAGTTTTATT-----AGACC-CGAGCTTGTA-----CATCCAT---TGACAG--TCTTA-A-AGG-A-GGTTGTGACA--TCGCTATTTGAGA-CACGtc
gi|8 : GGGGGG----TACCTGTACTTCGAGGCCGATT-ACAAGGTACAAACAACTTTTATACTGAATGAATTTTCT---ATTTGC------T-AA-GCAAATGT-AGTGCTA--CTTGCTGTG-CTTCAATCCAA----CC-CCA-TACCA-T-AGTTT-AT-AGTTG-TATTC----TGGTCG--TTTATTTCACTAGA-C-CGAGATTCTA-----CATCCAT---TGACAG--CCTTA-A-AGGAA-GGTTTTGACA--TCGATA
gi|9 : gAGGCCACCT--GAAGTG-GAATTGTT---TGA------CCC-----------TCCCC-----------C-C---------------TTCT-A-AA--ACA-AT-TATTTTGAAAAAA---AGATTATAGTAAAACG----AGGCATAAT-TA---TCT-CC-AATAT-G-T--ATATT-CAC-CGCCG-AT-CA-C-TTC---CAATA-ATG----T--CGA---TATATAA-TGCA-TAA-------GT--TA----TT---------T-CTACTTCTA-GTC-AAGA--TT-AAATAT-GTATC----CAACT-TTG-TGATGGAT--AC-TAAAATa
blockSeqs : C AC G TT A CAACA CCCCCCCCCCC CCCCCCCACACACCACA GT CG C T TATTTT ATA G TA TGTT CAT A CTA TT T TC CTA A C G G A A T TTT A C T TCAT TT CACT ATATAA A A CAGTGTA GA TTA AAAATAACC T AC T A C T G T T AGCG ACT C TG TA A TTGTAAAT C . TGCA TA CA TAT A T G CTGCTTCG TG G A GC G G T TACG A G C G T T GAAA G AGT T AATCC TCA CC C C AC CT G AT A G G G A C TACATTG C GAAGCA TTAACTTCTCAAA CTTT T A AC T T C TT T AATTAGTTGTA A A CTAAA CTAA ATTTT
blockSeqs : . . G . A A . CCCCCCCCCCACC CA . . . GATC . G . . . . C T . T TAG . . . T . . . T . . . A . G TA . . . . GT . . T . . . T . . . . CT C . . . CATGTAT . . AG . CA . T . G GCCGG T G . . . . A A . . . C T . . . A . . . . . . AA . . . . G T A T G . . . TT . A A . G T . . . AACTAGTT T . GAA . .
blockSeqs : . . A . C A . CTC A . . . AAT . A . . . . . C . T TG . . . . . . . . . . . . . T A . . . . G . . T . . . . . . . . C . . . . T . . . . CC . G . T GCGTC T A . . . . . A . . . C T . . . A . . . . . . A . . . . . G A G . . . . . T . . T . . . . . C
blockSeqs : . . A . T A . TC C . . . TAT . A . . . . . T . T TT . . . . . . . . . . . . . T C . . . . G . . T . . . . . . . . C . . . . T . . . . CA . G . G ACATC T G . . . . . A . . . T T . . . G . . . . . . T . .
blockSeqs : . . A . A A . CC T . . . TGC . A . . . . . T . T TG . . . . . . . . . . . . . T C . . . . G . . C . . . . . . . . C . . . . T . . . T . T . G GCGTC G G . . . . . A . . . C . . . . G . . . . . . A . .
blockSeqs : . . T . A . . TC A . . . ATA . T . . . . . . . T TG . . . . . . . . . . . . . A C . . . . A . . T . . . . . . . . C . . . . . . A . G . . T A . . . . . . . . . . . . . . . G . . . . . . A .
blockSeqs : . . A . T . . CC A . . . AT . . . . . . . . . . T . . . . . . . . . . . . . T C . . . . T . . A . . . . . . . . C . . . . . . . . G . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . . . . . . . . . A C . . . . G . . A . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . A T . . . . . . . . . . . . . . . . . .
blockSeqCons : **
originalCons : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTGTAANAAGAATGCTCATCTAAAGTATATAACCTC-GAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
finalCons : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTGTAANAAGAATGCTCATCTAAAGTATATAACCTC-GAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
Alignments
lowQualScore : 11111 22222222222 44444444444444444444444444444 111 1111111 1111 111 11 111 1111 1111111 1111111 1111 111111111 1111 33333333333333 11 1111 11111111 1 1111 1111 11111 11 1 3333333 1 222222 4444444444444 2222 11 1 11 1 22222222222 2222222 3333 33333
lowQualScore : 5 66 2 66 1 88888 11111111111 44444444444444444444444444444 111 66 5 5 4444444 0 888 4 66 0000 888 4 333 00 5 66 8888 4 4 4 8 4 4 4 111 4 4 4 2222 55 8888 2222222 4 4 3333333 55 0000 666666666 4 55 4 4 4 8 4 4 4 8888 2222 8 55 55 4 11111111111111 6 11 7777 66 77 777 1 5 5 0 22222222 55 1 5 66 5 5 0 0000 5 5 5 3 1 0 0 5 0000 5 999 5 22222 888 66 5 5 666 77 6 33 0 2 1 1 1 1 2222222 0 888888 7777777777777 1111 1 3 33 1 3 0 33 0 22222222222 1 7 1111111 0000 33333
lowQualScore : . .. . .. . ..... ........... ............................. ... .. . . ....... . ... . .. .... ... . ... .. . .. .... . . . . . . . ... . . . .... .. .... ....... . . ....... .. .... ......... . .. . . . . . . . .... .... . .. .. . .............. . .. .... .. .. ... . . . . ........ .. . . .. . . . .... . . . . . . . . .... . ... . ..... ... .. . . ... .. . .. . . . . . . ....... . ...... ............. .... . . .. . . . .. . ........... . . ....... .... .....
lowQualScore : 0 99 7 11 0 44444 11111111111 00000000000000000000000000000 000 99 0 0 0000000 2 888 1 99 6666 888 4 888 11 0 33 2222 4 0 0 0 0 0 0 000 0 0 0 5555 55 0000 2222222 0 0 0000000 55 2222 000000000 0 44 4 4 0 0 0 0 0 5555 7777 0 55 55 0 88888888888888 7 00 5555 99 66 888 9 0 6 2 22222222 22 4 0 99 0 0 0 1111 7 7 7 0 4 1 1 0 6666 0 111 0 55555 888 99 0 0 111 99 7 88 0 5 0 2 0 0 5555555 0 888888 8888888888888 2222 0 2 88 0 2 0 88 0 00000000000 0 3 0000000 7777 33333
consensus : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTGTAANAAGAATGCTCATCTAAAGTATATAACCTC-GAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
Reference ( family-866 ) : AGGC-ACCT--GAAGTGTGGATTTTT--GTNA----ACCCC-----------CCCCC-----------C-C---------------TTCT-N-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGCCG-AT-CA-C-TTT---C-ATA-A-G----T--CGN---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTN-G-C-AAGCTTTT-AAA-AT-G-A-C----CA--C-TTG-TGA--GAT--AC-TAATATA------T-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAGAATTT-CTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CATCCAT---TGACAG--CCTTA-A-AGG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGTTATC--CG-ATTGGCTCGTCANTATTCGGACNGTCTCAGCTTTTTTGGTANCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTANAGAAAACAAAAACGATGTCGATC--CAGANTATTTTGAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGAACTAGTTGTAANAAGAATGCTCATCTAAAGTATATAACCTC-GAA--AAGATTTAAAGTTTGAAACACGTTT---AAGCAATCATACATGTGC-----GTTTTATTTATGCATGGACGCGAGCCAATCG
gi|1 : AGGC-ACCT--GGAATGTGGATTGTT--GTTA----GCCCC-----------CCCCC-----------C-C---------------TTCT-C-AA--A-A-AT-TAT---GAAAAAA---TGAATATAA--AAACG----AGA---AAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CCC-CGTCG-AT-CA-C-TTC---C-AAA-A-G----T--CGA---T-----C-TGTA-T-A-------GT--TA--G-TT---------T-ATACTTTTA-T-C-AAGCTTTT-AAA-AT-G-A-C----CA--T-TTG-TGA--GAT--AC-TAATA-A------T-------GT-AAAGGTGCGCAACAAAATATGTCTAAACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAACTTT---ACTGAAAAAATCT-CTGTGTTCAGC--GCGTC-AT-CCTAATGT-AGTGCTA--CTTGAT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTA----T-GTCG--TTTATTTCACCAAACC-CGAGATTCTA-----CATTTAT---TGACAG--CCTTA-A-AGG-A-GGTTATGACA--TCGCTATCTGAGA-CGCATTATC--CG-ATTGGCTCGTCATTTTTCGGACTGTCTCAGCTTTTTTGGTAACACTAGAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCGCGAG----TTTTTAAAGAAAACAATAACGATGTCGATC--CAGAGTATTTTAAAAGCTTGTTTTGATAA-ATA--ATTTC-ATAGA--TAGTTATAAGAAGAATGCTCATCTAAAGTATATAACCTC-AAAATAAGATATAAAGTTTGGAACACGTTT---AAGCAATTATACATGTGC-----GGTTTATTTATGCATGGACGCGAGCCAATCG
gi|10 : GC-ACCTACGAATTGTGGGTTTTTTTGTAA----ACCCC-----------TCCCT-----------CTC---------------CTGT-A-AA--A-A-AT--AT---GACAAAA---TAAGTATAG--AAACG----AAG---AATATA---TC--AA-AGTA--A-T-GAT-TTCCCC-CGTCA-AT-CG-CTTTT---T-ACACA-G----T--TGG---T-----TATGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-C-AAGCTTTT-AAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TA
gi|11 : C-ACCT--GACGTGTGGGTTTTT--GTAA----ACCCT-----------CCTCC-----------T-C---------------TCCT-GTAA--A-A-AT-AAT---GACAAAA---TAAGTATAG--AAACG----AGA---AAT-TA---TC--AA-AGTAT-G----AT-TT-CCC-GGTCA-AT-CG-C-TTT---T-ACA-A-G----T--TGT---T-----A-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-CAAAGCTTTT-TAG-AT-G-A-C----CA----TCGCTAA--GGT--CC-TAga
gi|12 : AAGTGTGGATTT------CA------CAC-----------ACCCC-----------C-C---------------TTCT-C-AA--G-ATAT-GATC--GAACAAA---TAAATCT-G--AAA-G----AGA---AAT-TAC--TCT-CA-AGTATCG-T-TAA-T---CC-CGTTGGAT-GAAC-TTT---C-AAA-A-C----T--CGT---T-----C-TGCA-T-A-------GT--CA--G-TT---------T-CTACTTTTT-G-C-AAGCTTTC-GGA-AT-G-A-C----CA--CTTTG-TGA--GAT--AC-TAGTATgat
gi|13 : TAT-GCT-AAT-TT-CC---GCCGTAT-CA-C-TTTT--C-ATT-A-GA---T--CGT---T-----C-TGCA-T-A-------GT--CA--GTTT---------T-CTACTTTTC-G-T-TAGCTTTC-GAG-ATGG-G-C----CA--C-TTG-TGA--GAT--ACATAATATA------T-------GTCAGAGGCGCGGAAcaag
gi|14 : aacttaatatcttgttcC-ACCT--GAAGTGTTGATTGT---GTTA----ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAC-C---------------TTCTCA-AA--A-A-AT-TAT---GAAAAAA---TAAATATAG--AAATGTGTTGGA---AAT-T
gi|15 : T-TA---TTC-AA-AATAT-G-T-GAT-TT-CCC-CGCTG-AT-CA-C-CTT---C-ATA-A-GTCATT--CAA---T-----C-TGCA-T-C-------ATGACA--A-TT---------T-CTACTTTtaacaacattgttt
gi|16 : gccaataaatatgaataaactataggcctaatgatttATTAGTTG-TATTC----T-GTCA--TTTATTTCACCAGACC-CAAGCTTTTA-----CATCCAT---TGACAG--TTTTA-G-AAG-A-GGTTGTGACA--TCGCTATCTGAGA-CGCGT
gi|17 : AACAAACAGGAGGCTGCATACTTG--CTTTGAGACAGATTCATGGGATCTAAGTAATTTT---ACGGAAGAAAT
gi|18 : C-ACCT--GAAGTGTGGATTTTT--GTAA----ACCCA-----------CCat
gi|2 : -CCC-CGCCG-ATACA-C-TTTTTTC-ATA-A-G----TTTCGCACTT-----C-TGCAAT-A-------GT--TATTA-TTAAAATAACCT-TTCCTTTTACG-C-AAACTTCTCAAATAT-G-A-CAGCGCA--C-CTG-TGA--GATTAAC-TAATATA------T-------GT-AAA-GTGCGC----------GT--AAAC-AACAATGGGCAG--TA---------AGAGGTCGGTT----------AAAC-----T---AGTGA-------T-CT------AGC--GCCGG-ATGGCTAATGTAAGTGCTAGCCTGGCT-TCGTTTCATTTCAATACGCC-CGA-TACCACTGAG-TGTATTAAGTGTTATTT----T-GTCA--TTTTTTCCAACAGACCTCAAAC-TCTAAATCCCACCCATTCATGACAGCCCCTTACACAGG-ACGGTTGTGACACTCCGCTATTTGAGAGCACGTCATCATCGAATTGACTC-TCAGTGTTCGCGCAGCCTCATCT
gi|2 : ctacatcatgtctataGAAAA-------TACCACGAGAAGCAAAAAGC---------------CGCGAGCTTTTTTTTTTCTACCACCAACACG--GTCGATCACCAGATTATTTCGAAAGCTTG-TTTGACAACATATTCTTTCTATAGAACTAGTT---AAAAGcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtgaaaataccacgagaagcaaaaagccgcgagcttttttttttctaccaccaacacggtcgatcaccagattatttcgaaagcttgtttgacaacatattctttctatagaactagttaaaagcaag
gi|3 : ctacatcatgtctataccccgccgatacacttttttcataagtttcgcacttctgcaatagttattattaaaataacctttccttttacgcaaacttctcaaatatgacagcgcacctgtgagattaactaatatatgtaaagtgcgcgtaaacaacaatgggcagtaagaggtcggttaaactagtgatctagcgccggatggctaatgtaagtgctagcctggcttcgtttcatttcaatacgcccgataccactgagtgtattaagtgttattttgtcattttttccaacagacctcaaactctaaatcccacccattcatgacagccccttacacaggacggttgtgacactccgctatttgagagcacgtcatcatcgaattgactctcagtgttcgcgcagcctcatctcaatgcggattgtggtctgataaggggtcgaagccgatatgtatttttttttaaatgtagacactgttaaaaacctggtT-ATA-AT-G-A-C----CA--C-TTG-TGA--GAC--AC-TAATATACATGTAT-------GT-AAAGGTGCGCAACAAAATATGT--AAACAAACAGGGGGT----TACCTG--CTTCGAGATCTATTT-CAAGGTACAATCAACTTT---ACTAACATAATTT-CTGTAATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCCAA---ATC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTC----T-GTCG--TTTAATTCACCAAACC-CGAGCTTTTA-----CATCCAT---TGACAG--TCTTA-A-AGG-T-GGTTGTGATG--TCGCTATCTGAGA-CGCGTTATC--CA-ATTGGCTCGTCATTATTCGGAATGTCTCAGATTTTTTGGTACCACTAAAGGAAAA-------TAC-ACGA------AAGAGCTT-----------GGCCCGAG----TTTTTAAAGAAAACAAAAACGATGTCGATC--CAGAGTGTTTTGATAGCTTGTTTTGATAA-ATA--ATTTC-ATAG-----------ATAAGAATGCTCATCTAAAGTATATAACTTCTAAA--AAGATTTAAAGTTTGAAACACGTTT----AGCAATCAAACTTTTGC-----GTTTTATTTATGCATGAACcaag
gi|4 : T---ACTGAAAGAATTC-ATGTAATCAGC--ACATC-AT-GCTAATAT-AGTGCTA--TTTGTT-TC-TTTCA-TCCAA---ACC-CCA-TACCA-TCAGTTTTATTAGTTG-TATTT----T-GTCG--TTTATTTCACCAGACC-CGAGCTTCTA-----CTTCCAT---TGGCAA--CCTTA-A-AGG-A-GATCGTGACA--TCGCTATTTGAGA-CGCGTTATC--CG-ATTGGCTCGTAGGTATCCGGACGGTCTCAGCTTTTTGGGTAGCACTAAAGGGAAATACATTGTAC-ACGA------ATGAGCTTAACTTCTCAAAGGCGCGAG----TTTTGATAGAAAACAAAAAGGATGTCGATC--CAGATAATTTTGAAAGCTTATTTTGATAC-ATA--ATTTC-ATAGAATTAGTTGTAACAAGAATGCTTATCT------------CT--GAA--AAGATTTAAATTTTGAAACACGTTTCTAAAGCAATCATACATGTGCATTTTATTTTATTTATGCATTGACGCGAGCCAATCG
gi|5 : GGC-ACCT--GAAGTGTGGTTTTTT--GTAACAACACCCC-----------CCCCC-----------C-CCCCCCACACACCACATTCT-T-AACGA-A-AT-TGC---ACTAAAA---TAA-TATAA--AAACG----ATA---AAT-TACTATCTTAATAATA--G-TAGAT-TT-CCCGCGAGG-AC-CA-C-TTT---C-ATA-A-G----T--CGT---T-----C-TGCA-T-A-------GT--TT--T-TT---------TTCTACTTTTT-G-C-ATGCTGTT-GAA-AT-G-A-C----CA--C-TTG-TGA--GAG--AC-TAATATA------T-------GT-AAAGGTACGCAACAAAATATGT--AAACAAACAGTGGGC----TACCCG--CTTCAAAACTGAATCACAGGGTACAAACAACTTT---ATCAAAAGAATTT-CATTGATCA-------------------------GCTA--CTTGCC-TC-CTTCA-TCCTA---ACCATTAGTTTTA-TTAGTTTTATTAGTTG-TATTCGAAAT-ATC------ATTTCACTAGACC-TAAGCTTCTA-----CTTCCAC---TGACAG--CCTTA-A-Ag
gi|6 : AGGC-ACCT--GAAGTGTGA--CTTT--GTTA-------TC-----------CTCCC-----------T-C---------------TTTT-A-AA--A-A-ATATA----GAAAAAAATATAAATA-AA--AAACG----AGA---TAT-TA---TCT-AA-AATAT-G-T-GAT-TT-CTC-TGCCG-AT-CA-C-TTC---C-CTA-A-G----T--CAA---T-----T-TGCA-T-ACAGTGTAGT--TA--G-TT---------T-TTACTTTAA-G-C-AAACCTTT-AAA-AT-T-A-C----CG--C-TTG-TGA--TAT--AC-TAATACA------TTGTAAATGT-AAAGGTGCGCAACAAAATATGT--TAACAAACAGGAGGC----CACCTG--CTTTGAGGCCGATTCCCAAGGTACAAACAACTTT---ACTGAAATAATTT-TTGTGATCAGC--GCGTC-AT-GCTAATGT-AGTGCTA--CTTGCT-TC-TTTCA-TCC
gi|7 : ACAAACAGGGGGC----TACCTG--CTTCGAGGCCGATTCACAAGGTACAAACAGCTTT---ACTGAAAGAATTT-CTGTGATCAACCTGCTTCGAG-GCCGAT----GTGCTA--CTTGCT-TT-TATCA-TCCAA---ACC-CCC-TTCTA-TCA--TCCA--AACCC-CATAC----C-ATCAGTTTTATT-----AGACC-CGAGCTTGTA-----CATCCAT---TGACAG--TCTTA-A-AGG-A-GGTTGTGACA--TCGCTATTTGAGA-CACGtc
gi|8 : GGGGGG----TACCTGTACTTCGAGGCCGATT-ACAAGGTACAAACAACTTTTATACTGAATGAATTTTCT---ATTTGC------T-AA-GCAAATGT-AGTGCTA--CTTGCTGTG-CTTCAATCCAA----CC-CCA-TACCA-T-AGTTT-AT-AGTTG-TATTC----TGGTCG--TTTATTTCACTAGA-C-CGAGATTCTA-----CATCCAT---TGACAG--CCTTA-A-AGGAA-GGTTTTGACA--TCGATA
gi|9 : gAGGCCACCT--GAAGTG-GAATTGTT---TGA------CCC-----------TCCCC-----------C-C---------------TTCT-A-AA--ACA-AT-TATTTTGAAAAAA---AGATTATAGTAAAACG----AGGCATAAT-TA---TCT-CC-AATAT-G-T--ATATT-CAC-CGCCG-AT-CA-C-TTC---CAATA-ATG----T--CGA---TATATAA-TGCA-TAA-------GT--TA----TT---------T-CTACTTCTA-GTC-AAGA--TT-AAATAT-GTATC----CAACT-TTG-TGATGGAT--AC-TAAAATa