lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 5555555 2222222222222222 1 11111 11 2222222 22222 1111 222222222222222222222 111 22222222 1 44444444444444 11111 3333333333333333333333 11111 1111 1111111111 1111 1111111 11 111 6666666666666666666666666 22 2222222 666666666666666666666666666666666666666 111 11 2 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 11 11111 22222 1111 111 22 1 11 1 22222222 3333 1 22 1 1 1 1 88888888888888888888888 1 1 1 11 555555 1 111 11 1111111111111111111111111111111111111111111111 11 1 1 33333333 99999999999999999999999999999999 111 1 11 1 1 1 1 111 44444444444 1111 33 33
lowQualScore : 5 7777777 4 4 9999999 777 5555555555555555 4 9999 6 3 55 11111 22 1111111 00000 4 4 8888 4444 4 4 777 4 999999999999999999999 777 4 222 4 66 1 66 66 44444444 2 0 22 11111111111111 55 4 11111 777 4 9999999999999999999999 88 11111 44 3 5 1111 2 5 6666666666 5 7777 5 5 7777777 33 5 000 5 3333333333333333333333333 6 6 6 77 6 8888888 5 5 000000000000000000000000000000000000000 555 1 00 6 6 7 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 99 3 6 3 6 00 6 77777 00000 6 1 6 6 2222 6 111 6 55 3 33 999 0 0 88888888 3 3333 0 2 33 0 0 0 0 66666666666666666666666 0 3 3 88 888888 0 3 7 111 3 00 9999999999999999999999999999999999999999999999 22 99 2 0 0 2 44444444 22222222222222222222222222222222 9 777 0 33 0 0 2 0 3 0 3 3 666 33333333333 4444 6 6 44 6 6 6 6 3 55
lowQualScore : . ....... . . ....... ... ................ . .... . . .. ..... .. ....... ..... . . .... .... . . ... . ..................... ... . ... . .. . .. .. ........ . . .. .............. .. . ..... ... . ...................... .. ..... .. . . .... . . .......... . .... . . ....... .. . ... . ......................... . . . .. . ....... . . ....................................... ... . .. . . . . ................................................................................................................................................................................... .. . . . . .. . ..... ..... . . . . .... . ... . .. . .. ... . . ........ . .... . . .. . . . . ....................... . . . .. ...... . . . ... . .. .............................................. .. .. . . . . ........ ................................ . ... . .. . . . . . . . . ... ........... .... . . .. . . . . . ..
lowQualScore : 0 4444444 4 4 6666666 888 9999999999999999 4 4444 8 9 44 11111 22 3333333 66666 0 0 5555 0000 0 0 000 0 222222222222222222222 000 0 555 0 99 1 22 11 77777777 0 0 99 00000000000000 55 0 22222 000 0 0000000000000000000000 11 11111 66 6 0 4444 5 0 8888888888 7 9999 7 0 9999999 66 7 000 7 7777777777777777777777777 7 7 7 22 7 3333333 7 7 444444444444444444444444444444444444444 777 0 22 7 7 7 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22 3 7 7 7 22 7 88888 88888 7 0 7 7 7777 7 777 7 00 3 88 000 2 0 88888888 2 8888 0 5 88 0 0 0 0 22222222222222222222222 0 3 3 33 777777 0 2 0 555 2 55 5555555555555555555555555555555555555555555555 55 00 5 0 0 5 55555555 88888888888888888888888888888888 8 555 0 88 0 0 5 0 2 0 2 2 222 44444444444 2222 7 7 22 7 7 7 7 5 00
consensus : CCCCGCC-CACAC---TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT-C----GATGGAACG-TA-----CGG--TTA--AA-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTAAATCGCCGA-TATTTTA-AAAAATAAA---TTG--AG--G-AAAAATT--T-CA-CC--A---GCAC-C------T-----CTC------CATTATG-GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-TA--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AAG-AC-----GA----TACA---------CACG-TG-ATTT-GAA-TGCA-TT-G-----TCC-GCT-TTCAT-TAGTC--TT-CAA---CGTCTC-GTG-ATT-------TTTN--AAAA-AAGTGTC-T-TCGA-TACATAA--T-TATT----T---A----ACA---CA-CTAAA----TCTA-C----------------TT-TGATAAA-TTGT------------ATTTA--GA---------T-AN---NT--------GT---A-----T-------AAGC-ANAAG-------TTCGG-CG---AGCCAAA--GGGT--TTC-CGG-TNC-ACCCCGCTC-CCC----GCGC----GGG-GAGCGGGGT-GNAC---CG-AAAA---C-CTT--GCTAGC-GAAGATA--AAATACGT-TTTT---C----TAAACAAATGATA--GTTTTAC-ATCATTTN-CA-AGGTG-AAATG-CACT-AGTAT-GATT----TA---GT-----TTAT-TC-ATCAAA-ATT--AATTTT-ACA--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATAC--------GTGCTG-GCGCGC-AC-GCAGGCATG----TG-TTAA-NATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGATAGGGA---------------------TATATTT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-AAT-ATG---ATATAC----ATCG-A-ATT-AAA-A-TAGT-GTGGAA-TTGACGTTTGTGTTCTA
Reference ( gi|4 ) : CCCCGCC-C-CA----TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAA---TT-C----GATCGACCA-TA-----CGG--TTA--CA-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-CCCGTA-TG--TTAAAGTGCCAA-TATTTTA-AAAAATGAA---TTGGGAG--G-AAAAATT--T-CA-CT--A---GCAC-C------A-----CTT------TATTATG-GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-TA--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AAG-AT-----G-----TACA---------CACG-TG-ATTT-GAATTGCA-TT-G-----TCC-GCT-TTCATTTAGTC--TT-CAA---CGTCTC-GTG-AAT-------TTTA--AAAA-AAGTGTC-T-TCGATTATATAA--T-TATT----T---A----ACA---CACCTAAA----GCTA-C----------------TT-AGATAAATTTGA------------ATTTA--GA---------T-AT---TT--------GT---A-----C-------AAGC-ACAA--------TTCG--C----AGCCAAACAGGGT--TTT-CGG-TCC-ATTCCGCTC-CCC----GCAC----AGG-GAGCGGGGT-GCAC---CG-AAAA---C-CTT--GCTAGT-GAAGATA--AAATCTGT-TTTT---C----TAAACAAATGATA--G-TTTAC-ATCATTTGCCA-AGGTG-AAATG-CACT-AGTA--GATT----TA---GT-----TTAT-TC-ATCAAA-ATT--AATTTTCACAATCATTACA-TATATTTTAAT-TATAAAATGTAACAC-ATAC--------ATGCTG-GCGCAC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGAAAGATAGGGA---------------------TATATTT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAACAAT-ATA---ATATAC----ATCG-A-ATT--AA-A-TAGT-GTGGAA-TTGACATTTG-GTTCTACA
gi|6 : CCCCGCC-CATAC---TTT-TA-CCA-C-C---CAAGAAA---CTTAATT----AAG---TT-C----GATTGAACG-TA-----CGG--TTA--AG-G-GATT-C---AG-A-CT----GTGTT----TGA-ATAT-CA---T-C----AAA-A--C---TTTTA-AA---AT-T---CGTAC-AGCGATA-ACCGTA-TG--TTAAACCGCCGA-TAGTTTA-AAAAATGAA---TTGG--G--G-AAAATTT--T-CA-CC--A---GCAC-C------T-----CTG------CATTATG-GAA-----GC-AAGATT-TGAA-C-TTCA-TGA---CCTTC--CT-T----G-AA-TA---T--CTCGCTCTATA--C--A---AAG-AT-----GA----TAC----------CACG-TG-ATCT-GAA-TACA-TT---------C-GAA-CACACGAAGCC--TC---G---CGTTTT-TT----T-------TTTT--AATT-TAGTGTC-T-TCGA-TACATAAT-T-TATT----T---A----CCAACTCA-TTAAA----TCTA-C----------------TT-TAATAAA-TTGT------------ATTTA--GA---------T-AA---AT--------GT---A-----T-------AA
gi|5 : aCCCCGCC-CATAC---TTT-TA-CAA-C-C---CAAGAAA---C---AT-----GAAG--TT-C----GATGGAACG-TA-----CGG--TTA--TA-T-CATT-C---AA-G-CTCAGTGTGTT----TGA-ATAT-CA---T-TTAATAAA-AA-C---TTTTA-AA---AT-T---TGTAC-AGCGGTA-ACCGTA-TG--T---------GA-TAATTTA-AAGAATAAA---TTGGAAG------AAATT--T-CA-CTTGA---CCAC-C------AGTCCTCTC------CATTATG-AAA-----AT-TAGATT-TGAA-C-TCCA-TGA---CCTTC--CT-T----G-AA-TA---T--CTCGCTTTATG--CA-A---AAG-ACGATAGG-----TAC----------CACA-TG-ATTT-GAA-TACA-TT-G-----TCC-GCT-TTTA--TATTCT-TT-CAT---TGTTTC-GTGTTTT-------TTTT--TAAA-AAGTGTC-T-TCGA-TACATAA--TATATTATACC---A----ACA---CA-CTAAA----TTTA-C----------------TT-TCATAAA-TTGT------------ATTTA--GA---------T-AA---AT--------GT---A-----T-------Actatttaaatat
gi|16 : gCCCCGCC-CACAC---TTT-TA-CAA-C-C---CAAGAAA---C---AC-----AAG---TT-C----GATGGACCA-TA-----CGG--TTA--AG-G-GATT-C---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTA-AA---AT-T---CGTAC-AGCAATA-ACCGTA-TG--TTAAATCGCCGA-TCTTTTA-AAAAATAAA---TTG---G--G-GAAAATT--T-CA-TC--A---GCGC-C------T-----CTC------CATTATG-GAA-----AC-CAGAtaactattt
gi|7 : CCCGGCCAC-CACAC-TTT-TA-CAA-AAC---CAAAGAA---C---AT-----AAAAATTT-C----GATGGACCAATAACGAACGC--TTAAGCA-G-GCATTC---AG-G-CT----GTGTG-----GACATATTCA---T-TGGA-AAA-AG-C---TTTTATAAGAAATAT---CGTAC-AGCGATA-CCCGTAGTG--TTAAATCGTCGA-TATTTTATAAAAATAAA---TTG---G--G-AAAAATTACT-CATCA--A---GCAC-CG-----A-----CTTACCCAGTACGATT-GAATTCACAC-CAGAGT-TGAA-CGTCCA-TTAACCCC-TATCCT-T----GAAA-TC---TTCTTCGCTCTA-A--TA-ATTTAAT-AT-----GACGGATACAAGGGTCAGTCGCA-TGAATTT-GAA-TGCATTT-GCTCACCCC-GCTATTCA--TAGTCT-TT-CAACCGCGTCT--GTT-A---------TTTA--A
gi|17 : gcCCCGCC-CACC----TTT-TA-CAG-A-T---CAAAAAA---CG--AT-----GAA---TTTC----GATGAAACG-TA-----CGGATTTA---A-G-GATT-C---AGCG-CT----GTGTT----TGA-ATAT-CA---T-TA---AAA-AA-C---TTT--TAA---AT-T----GTAC-AGCGATA-CCCGTA-TG--TTATAATGTCGCTTATTTTAGAAGAATGAA---TT--GAG--G-ATAAATT--T-CA-AC--A---ACAC-C------T-----CTC------CATTA
gi|14 : gCCCGTC-CACAC---TTT-TAGCAG-A-A---CTAGAAA---C---AT-----A-----TT-C----GATAGACCG-AG-----CGG--TTA--AA-T-AATTCC---AG-GGCT----GTGTT----TGT-ATAT-TA---T-C----AAA-AA-CAAATTT----A---AT-TTG-CGTAC-AGC-ATA-CCT----TG--TTACATCG-CGA-TATTTTA-AAAAATAAA---T----AG--GCAAGAATT--T-CA-CT--A---GAAC-T------------CTC------CATTAT--GAA-----ACGCTG-TT-TGAA-C--CCA-TGA---CC-aagg
gi|24 : CCCGCC-C-CACACGTTTGTA-CGA-C-CGATCAAAAAA---CC--AT-----AT----TT-C----GATGAAACG-TA-----CGG--TTT--AA-GCGATT-C---AG-G-CT----GTATTCTTGTAA-GTAT------T-C----A------------TGATAA---AC-T---CGTAC-AGCGATATCCCGT--TGACTTAAATCGCCGC-TATTT
gi|33 : GCC-CACAC---TTT-TG-CAA-C-C---CAAGAAA---C---AT-----AAG---TT-A----GATGGAACG-TA-----CGG--TTA--AG-G-GATT
gi|23 : ----TTT-TA-CAACC-C---CAAGAAAATTC---ATCCAAAAAA---AT-CGCATGAT--ACCA-TA-----CGGTTTTA--CATGCGAATTCAAAAG-G-CT----GTGTTTC--TGA-ATAT-CAACCTAT----AAACAATC---TTTTA-AA---AT-TCTCCGTACAAGCGATA-c
gi|13 : agccaccaggcccaaacaac-GATTT----AG-G-CT----GTGTT----TGA-ATAT-CA---G-T----AAA-A--C---TTTTA-AA---TT-T---CGTTT-TGCGATA-GCCTTA-CA--TTAAATCGCTGA-TA-TTTA-AAAAA--AA---T----AG--C-AGACATA--T-CA-CT--A---A-AC-C------T-----CTC------CATTATA-AAA-----A--CATGTT-TGAA-----AA-AAA---AC-TA--CT-TTTTAG-AA-TT---T--CTac
gi|21 : cccatacttttacgaatgtagaaacatgtttgcgagaaggtacatttttaaaatTTT---AG-G-CT----GTGTT----TG-----T-CG---T-T------------------T-TAA---TT-T---CGTTT-AGCGATA-TC------------AA----CGA-TATTC-A-AAAAA-GAA--------AGCTG-AAG------------T--G---GAAC-C------T-----CTT------CATTATA-GAA-----AC-CTG-TT-TGAA-C-TTAA-CGA---CT-TA--CC-TG---G-AA-TA---G--CTGGCTCTATG--CA-A---AGG-atttggagatttcatatcagc
gi|3 : taggtagagttaaatcaAAAATAAA---TTGATGG------AAATT--T-CA-CCG-A---GCACGC------T-----CTC------CATTATATGAA-----AC--AGATTGTGAA-CCTCCACTGA---CC-TGACCT-T----G-AAGTC---T--CTCGCTCTATAATCATA---AAT-AC-----GA----TACAA--------CACGCTG-ATTTTGAAT-GCT-TTCG-----TCCCGCT-TTCATT-AGTCCTTT-CAA---CGTCTC-GTG-ATT-------TTTTTTAAAA-AAGTGTC-T-TCG--TACATAA--T-TTTG----T---ACCGAACA---CAC-TAAACATCGTTA-CCTTTGATGAATTTGTATT-AGATAAATGTAATTATATACACTTATTTA--AA---------T-ATAGCGT--------GT---A-----TTTTTCAAAAGCCAGAAGT------CTCG--CGT--AGCCA----GTGT--TTTTCGG-TCC-ACTCCGCTCGCCC----GCGCTAATAGG-GAGC-GGGT-GCATCCGCG-ACAC---C-CTTTGGCTAGTCGAAGATAAGAAATACATGTTTT---C----T-AACAAATGATA--GTTTTACAATCATTTTCCACAGGTGAAAATG-CACTAAGTAT-GATT----TA-----------TAC-TCGATACAC-ATTAAAATTTTACCAA-CATTACAGTATA--ATATT-TATAAAATGTAACACAATACCA------GTGCTG-GCGTACGATGGCAGGCATGGTCATG-TTTA-GAT----TCAAAAT-ATCTGCATTT---CATT-TATATTCTTGAAGATTAGGGGGGGGAAAAATTTGAGGTTTTTTGTA-TT---TGTG-CT--AAATTTGT-GTGAATATT-C-GT-ATATAAATGA-AATTAA-AATGATG---ATATAC----ATCG-ACATTAAAA-A-TAGTGGTGGAA-TTGACGTTttaatatcag
gi|1 : AATAAACATTTGGGA-----AACAATT--TGCA-CC--ATAAGCAT-CCTGACAA-----CAT------C-TTATG-GAA-----AC-CAGATT-TGAAAC-TC---TGA---C--TA--CCCT----G-TA-CCATGC--GTCGTCCTATAA-CA-A---AAGGAC-----GA----TACA---------CA-G-TG-ATTT-GGAATGCA-TT-GA----TTC---T-TTCATAT-GCT--TT-CA----CTTCG--GTG-ATTACTTTTATTTA--AACACAAGTGTC-TGTTGAT-ATATAA--TATATT----A---T----ACT---CAC-TAAT----CCTA-C----------------TTTGGATAAATT-GT------------ATTTATAGAATGTATAACT-AT---TTAATATACGGT---AGTTTTC-------AAGC-ACGT--------TTCGG-CGGTAAGCCCAA--GGGTCTTTT-CGG-TCCTATTCCGCTC-CC-----GCAC----AGG-GAGCGGGGT-GCA----CG-AAAC---C-CTTG-GCTAGC-GAAGATT--AA---TTT-TTTG---CCTGTTAAACAAATGATA--GTTTTAC-ATCATTTG-CA-AGGTG-AAATGCCACT-AGTATTGATTATGATACATGTA----TTATGTC-ATCAAA-ATT--AATTTT-ACA--CATTACA-T-TATTTTCAT-TATAATATGTAACACTAT-C--------AT-CTGTGCG-GC-CC-GC--GCATG----T--TTAAGCATGTAAT--AAAT-ATC-G-ATTCCATC-TT-TATATTCTTGGAAGAGAGAGA---------------------TATATTT---TGTGTCT--AAA-TTGT-GT-AATATT-TAGG-AT-T--AT-C-AATTAA-AAT-AT----ATATAC----ATCG-A-ATTTAAA-A-TAGT-GTGGAA-TTGACGTTT--GTTCTAcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|30 : A-TCA--T--CTAGCTCTATA--CA-A---AAG-AC-----GA----TACA---------CACG-TG-ATTT-GAAT-GCA-TT-G-----TCC-GCT-TTCA--TAGTC--TT-atgttatttacaacggaatggcatatgcggttctttcattctgtttagacccgccctaccgttttatcattattcatgcggatggagatacaaaccttggaacgaactgggccggatgggtttagaaatcagtcgattttttcagcattttccactgacaataaacaaaagggaatatcaaagtttcagtaaatcattcttgtgcgtttttatggtaaaaaaaaattagactttagtgtagtagctttattaagtttgtagtcataattgtaaaggggccagcagctatggagaactgcattt
gi|2 : tt-GCT-TTAAT---GTC--TTTCAA---AGTCTCCGTG-A-T-------TTTG--AAAA--AGTGTCTT-TCGA-TATATAATCT-TATT----TACCA----ACA---CA-CTAAA----TGTATC----------------TT-TGATAA--TTGT------------ATTTAC-GA---------TAAA---TT--------GT---A-----
gi|18 : t-AAGTGTC-T-TCGA-TACATAA--T-T-------------------------CTAAA----TCTA-C----------------TT-TGATAAG-TTGT------------ATTTA--GA---------T-AA---AT--------GT---A-----T-------AAttaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatatgtttttgttctaaacaaatgatagtgtttacatatttgcaaggtgaaatgcactagttttaatttctattattcatcaaacattaattttacacattgcatatactttattctatagaatgtaacacatacactgatgtatgctggtgcccatgcaagttgtatttaaaacgcaatcaaaataatcgcattcattatattcttgagatagggctataattatctgtgctcaaaattgtggtgaatattgtagtaatataaatcaattaaaatatatatacatcgaaatttaaaatagtgtgggacttgaagtttgttcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|1 : gcactaaatctactttgataagttgtagttagataaatgtataactatttatatacgtgngtttttttgttttgttttttt-AT---TT--------GTTTAA-----C-------AGGC-AAAAAATTAATCTTCG--CT---AGCCAA---GGGT--TTC---G-TGC-ACCCCGCTC-CCT----GTGC-----GG-GAGCGGAATAGGAC---CG-AAAAGACC-CTT--Gctatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|3 : aataaacatttgggaaacaatttgcaccataagcatcctgacaacatcttatggaaaccagatttgaaactctgactaccctgtaccatgcgtcgtcctataacaaaaggacgatacacagtgatttggaatgcattgattctttcatatgctttcacttcggtgattacttttatttaaacacaagtgtctgttgatatataatatattatactcactaatcctactttggataaattgtatttatagaatgtataactatttaatatacggtagttttcaagcacgtttcggcggtaagcc--------TTCGACT----AGCCAAA--GGGT--GTCGCGGATGC-AC-CCGCTC-CCTATTAGCGC----GGGCGAGCGGAGT-GGAC---CGAAAAA---CACTG--GCTAgatagttttacatcatttgcaaggtgaaatgccactagtattgattatgatacatgtattatgtcatcaaaattaattttacacattacattattttcattataatatgtaacactatcatctgtgcggcccgcgcatgtttaagcatgtaataaatatcgattccatctttatattcttggaagagagagatatattttgtgtctaaattgtgtaatatttaggattatcaattaaaatatatatacatcgaatttaaaatagtgtggaattgacgtttgttctaatgttatttacaacggaatggcatatgcggttctttcattctgtttagacccgccctaccgttttatcattattcatgcggatggagatacaaaccttggaacgaactgggccggatgggtttagaaatcagtcgattttttcagcattttccactgacaataaacaaaagggaatatcaaagtttcagtaaatcattcttgtgcgtttttatggtaaaaaaaaattagactttagtgtagtagctttattaagtttgtagtcataattgtaaaggggccagcagctatggagaactgcattt
gi|29 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtacataattttgtaccgaacacactaaacatcgttacctttgatgaatttgtattagataaatgtaattatatacacttatttaaatatagcgtgtatttttcaaaagccagaagtctcgcgAGGGT--TTT-CAG-TTC-ACCCCACTC-CTC----GTAT----GGA-AAGCATGGT-GAAC---TG-GAAA---C-CCTTAGCTAAT-GAAGAgataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|29 : gtcaAGGGT--TTC-CAG-TTC-ACCATGCTT-TCC----ATAC----GAG-GAGTGGGGT-GAAC---TG-AAAA---C-CCT--
gi|2 : gtcaTA--AAATATGT-TTTTGTTC----TAAACAAATGATAGTG-TTTAC-AT-ATTTG-CA-AGGTG-AAATG-CACT-AGT-----TT----TA---ATTTCTATTAT-TC-ATCAAACATT--AATTTT-ACA--CATTGCA-TATACTTTATTCTATAGAATGTAACAC-ATACACTGATGTATGCTG-GTGCCC-AT-GCAAGT-TG----TATTTAA-AACGCAATCAAAATAATC-GCATTC---A--T-TATATTCTTG--AGATAGGGC---------------------TATAATTATCTGTG-CTCAAAA-TTGTGGTGAATATTGTAGTAATATAAAT-C-AATTAA-AAT-AT----ATATAC----ATCGAA-ATTTAAA-A-TAGT-GTGGGACTTGAAGTTT--GTTCTtagctaatgaaga
gi|11 : tgctttaatgtctttcaaagtctccgtgattttgaaaaagtgtctttcgatatataatcttatttaccaacacactaaatgtatctttgataattgtatttacgataaattgtattaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncA--AAATCTGT-TTTT---C----TAAACAAATGATA--GTTTTAC-ATCATTTTGCA-AGGTG-AAATG-CACT-AGTA--TATT----GA----T-----TTAT-tatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|15 : tttacattatgttgcttaactatttatatatacatgtagttttcaaagcagaataaatctgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TATATTTTATT-T-TA---TGTAACAC-AT------------GCTG-GC-------------------------TAA-CATTCAATCAAAAT-TTC-GCATTC---C-ATATATAGTCTTG--------GGA---------------------TATATTT---TGTG-CT--AAA-TTGC-GTGAATATT-TAAT-ATATAAAT-CAAATTAA-AGT-ACATACATGTACGTATATCA-A-ATT--AAGA-TAGT-ATGCAA-TTGACGTTTGTGTTgttaaattatttgaatctttgaaaactccagcataatttgataa
gi|28 : ---ATATAC----ATCG-A-ATTG-AA-A-TAGT-GTGGAA-ATGACATTTtattgatttgatcta
gi|8 : ---ATGTAT----ATCG-A-ATT--AA-AATAGT-GTAGAA-TTGACGTTTGTGTTacgagtgtttattaatttgatataagtaaacagggatcgcatgcttcgtaaactt
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AAACAAGGATCCAGTCGCGTCTTATCATTCTGTTTAGACCCGCCCACTCCTTTTATCAATTATTCATCGAAGGAATGGAAAGATTACAAACTTGACAGAAAACTCCCGTATGAGGTTTAGAAATCAGTCGTTTTTCAGCTTATTCCTAACATGACAATAAACAAAGGCACTATCAAAAGTTTTCAGAACTCATTCTTTGTGGCGTTTTATGTAAAAAAAATCTAAAACCCTTTAGTTAATTAGTTTTGAGTTGTAGTCAATGTAAAAGGTGACAGCGCGATATGGATACTGCACTTCATC
Unaligned ( gi|10 ): GTAAACGGGGATCGCACGCGGTCTATTCATATTCCTAAACTTTCTGTTTAGACCCGCCCACTCCGTTTATCATAGTGAAAGATCACAAACCTCGACGAAAACTGCCCGGTAGGAGGTTTAGAAATCAGTCGATTTTTTCAGAAACAAAGGGAACTATCAAAAGTTTTCAGAAATCATTCTTTGTGACGTTTATGTATTAAATTCTAACTTTAGTGTTGTAATTTTGAGTTTGTAGTCAATGTACATTGTAAAAAGGGGTCAGCACATATGGAGACTTCACTTGATCC
Unaligned ( gi|12 ): TCATTTTTGTTTAGACCCAACCACTTTGTCATTATTTATGAAGGATTACCATGATGAAAACTGCTTGTTAAACCTGGGTTTAAAATTCAGTTGATTTTTCAGCATTCCTCGTGACAAAAAACAAAGGGGACTATTAAAACTATTCAGAAACCATTGTTTGTGGTGTCTTAAGTTTAGAATTTTAACTTGTGTTGTACAATATAATTGCTTTTATTGACCATGGAAAAAGGGCATATGCCAATAGCTGTCTCACGTCTTCCTT
Unaligned ( gi|19 ): TTGGTTGCAGATTCAGCAAATTGTTGGCATTTCTTGAGGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTTACATTGTAATTGCTTTTACTGGCAACGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|20 ): TGGTTGCAGATTCAGCAAATTGTTCGGCATTTCTTGAGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTACATTGTAATTGCTTTTACTGGCAACGGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|22 ): TTACATATTCATTTAAATTTTTGGGCATTTCTCGAGACGAAAAACAAATGAGACATTGTCTGTGGTGTCTAAGTATGTAATTTTAACTTTTGTTTAACATAATTGCTTGTATTGGCAACGGGAAAAAGGGGGCAGCTACAATAGTTGTTTAACTCATAC
Unaligned ( gi|25 ): AAAACATTCCATAACCTCCTCGTGGTGATTTAAGGTATTATAGTTTTAACTTTTGTACGAAATAATTGCTTTTTACATCGGCCACGGAACAGGGTTCATCTTCTAATAACTGTTTTAACTCATCCTT
Unaligned ( gi|26 ): AAATTCAGTTTAGTTTTCGGATCCTGTGACGAAAACAAGGAGACTATTAACTTCTATTTAAAAGAAGCATTGCCTATAGGATATATGTAACTTTTGAATTAAAATTGTTTTTACTGGCCA
Unaligned ( gi|27 ): GTCTGTGGTATCTATGTATAAAATTTTAACTTTTGTACAGTAGAAGTATCTTTATTCACCAAAGAATTGGGGTCAAATCCAATAGCTATTTTACATTTTCC
Unaligned ( gi|31 ): TAATCTGAAACCATTGTCTGTGGTGTCTAGGTATATAATTTTAACTTTCGTACACTNATGTCTGCT
Unaligned ( gi|32 ): GTAGTAGTTTTGAGTTTGTAGTCAAATTAAAAAGGGGCCAAAACAAACGGAGACTGCACTTCATC
Unaligned ( gi|34 ): TAGTCAATGTAAAAAGGGGCCAGCACATATATGGAGACTGCACTTCATCC
Alignments
lowQualScore : 111 22222222222 111111 11111 1111 1111 111 111 1111 1111111 111 11111 1111 1111 1111111 11 222222222 2222222 111 11 1 1111 11 1111 111111111 3333333333333333333 11111 1111111 888888888888888888888888888888888888888888 11 11 11 22222 1111 1111 22 3333333333333 1111 11111111 111 111 1 111 4444444444444444444444444444 1 11 1 11111 55555555555555555555555555555555555555555555 222222 2222222 555555555555555 111 11 111 222222 11 11 1111
lowQualScore : 55 3 55 3 3 3 3 7777777 666 333 55555555555 55 3 3 000000 77 555 44 888 55555 3 3 7777 2222 3 3 666 3 7777 3 44 666 777 666 3 111 3 44 44 55 4 777 1 0 8 666 5555 3 55 3 2222222 666 1 88 3 7777 55 55 111 00000 4 2 4 4 8 1 4 777 4 7777 5 5555 5 4 3333333 11 5 888 888 5 5 77 888888888 5 5 5 5 5 5 5 2222222 5 5 999 11 0 3333 11 2222 66 3 666666666 5 5 5 5 7777777777777777777 888 4 66 66 8 4 4 4 4 4 44444 6666666 555555555555555555555555555555555555555555 0 11 11 88 8 1 8 8 00000 7777 8 1 7777 8 0 8 22 8 999 0 6666666666666 99 8888 6 6 88888888 111 6 6 555 6 1 6 6 3 6 6 111 4444444444444444444444444444 8 6 8 8 11 0 88888 8 0 3 1 8 0 44 88 77777777777777777777777777777777777777777777 99 5 8 8 333333 8 88 3333333 000000000000000 444 8 11 8 8 8 0 8 0 0 111 8 333333 8 88 5 33 55 5 5 4444
lowQualScore : .. . .. . . . . ....... ... ... ........... .. . . ...... .. ... .. ... ..... . . .... .... . . ... . .... . .. ... ... ... . ... . .. .. .. . ... . . . ... .... . .. . ....... ... . .. . .... .. .. ... ..... . . . . . . . ... . .... . .... . . ....... .. . ... ... . . .. ......... . . . . . . . ....... . . ... .. . .... .. .... .. . ......... . . . . ................... ... . .. .. . . . . . . ..... ....... .......................................... . .. .. .. . . . . ..... .... . . .... . . . .. . ... . ............. .. .... . . ........ ... . . ... . . . . . . . ... ............................ . . . . .. . ..... . . . . . . .. .. ............................................ .. . . . ...... . .. ....... ............... ... . .. . . . . . . . ... . ...... . .. . .. .. . . ....
lowQualScore : 00 6 00 6 6 6 6 9999999 444 666 11111111111 00 6 6 555555 99 888 66 333 66666 6 6 7777 7777 6 6 444 6 7777 6 88 444 444 444 6 444 6 66 77 55 0 777 6 9 9 444 7777 6 00 6 2222222 444 4 66 6 7777 00 00 000 00000 0 3 4 4 9 1 4 888 4 6666 0 6666 0 4 8888888 99 0 888 888 0 7 99 666666666 7 7 7 7 7 7 7 9999999 0 0 666 99 0 9999 55 8888 99 0 666666666 7 7 7 7 0000000000000000000 888 4 11 11 9 4 4 4 4 4 11111 2222222 666666666666666666666666666666666666666666 8 00 00 88 0 0 0 0 22222 0000 0 0 2222 0 6 0 00 0 222 8 7777777777777 22 5555 7 7 55555555 777 7 7 000 7 0 7 7 3 7 7 777 0000000000000000000000000000 0 0 0 0 00 0 55555 0 8 8 4 0 8 88 88 88888888888888888888888888888888888888888888 00 0 0 0 000000 0 88 6666666 000000000000000 000 0 00 0 0 0 8 0 8 8 000 0 000000 0 99 7 66 99 7 7 2222
consensus : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCATT-AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTTA---AAA---AAGTGTCT-T-CGAT-ACATAA-T--TATT----T----A---ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GAT-AAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTT-CGG-TCC-ACTCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGCACC---GA-AAAC-CTTT-G-CTA-G-CGAAGAT-------------AA--AAT--ACGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-ATCA-TT-TGC-A-AGGTG-AAATG-CACT-A---GT-A---TGA--TT----TA---GT-----TTAT-TCGAT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCGC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
Reference ( family-824 ) : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCATT-AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTNA---AAA---AAGTGTCT-T-CGAT-ACATAA-T--TATT----T----A---ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GAT-ANN---TGTAT-------AA--------------GC-AN-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTC-CGG-TNC-ACCCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGNACC---GA-AAAC-CTT--G-CTA-G-CGAAGAT-------------AA--AAT--ACGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-ATCA-TT-TNC-A-AGGTG-AAATG-CACT-A---GT-A---TGA--TT----TA---GT-----TTAT-TC-AT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------GTGCTG-GCGCGC-AC-GCAGGCATG----TG-TTAA-NATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
gi|1 : AATAAACATTTG--G-GA-AACAATT--TGCAC-----C-ATAAGCAT-C-C----TGACAACATCTTATG---GAA-----AC-CAGATT-TGAAAC-TC---TGA---C--T-A--CCCT----G-TA-CCATGC--GTCGTCCTATAA-CA-A---AA---GGAC-GATA--CA---------C-A-G-TG-ATTT-GGAAT-GCA-TT-GA----TTC---T-TTCATA-TGCT--TT-CA----CTTCG--GTGA--TTACTTTTATTTAAACACAAGTGTCTGT-TGAT-ATATAA-TA-TATT----A----T---ACT---CAC-TAA--TCC--TA-CTTTGGATAAA-TT-GTATTTA-TAG-AA----TGTAT-------AACTATTTAATATACGGT-AGTTTTCAAGCACGTTTCGGCGGTAAGCCCAA--GGGTCTTTT-CGG-TCCTATTCCGCTC-CC-----GCAC----AGG-GAGCGGGGTGCAC----GA-AACC-CTT--GGCTA-G-CGAAGAT-------------TA--ATT-----T-T-TTG---CCTGTTAAACAAATG---ATAGT-TTTAC-ATCA-TT-TGC-A-AGGTG-AAATGCCACT-A---GT-AT--TGA--TTATGATACATGTA----TTATGTC-AT-CAAA-ATT--AATTTT-AC--A--CATTACA-T-TATTTTCAT-TATAATATGTAACAC--TATC--------AT-CTGTGCG-GC-CC-GC--GCATG----T--TTAAGCATGTAAT--AAAT-ATC-G-ATTCCATC-TT-TATATTCTTGGAAGAG------AGAGATATAT---------------TT---TGTGTCT--AAA-TTGT-GT-AATATT-TAGG-AT-T--AT-C-AATTAA-A------AT-AT--ATATACATCGA-AT-TT-AAAATAGT-GTGGAA-TTGACGTT------TGTTCTA
gi|11 : -------------AA--AAT--CTGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-ATCATTT-TGC-A-AGGTG-AAATG-CACT-A---GT-ATATTGA--TT----TAT--GT-----Tatgttatttacaacggaatggcatatgcggttctttcattctgtttagacccgccctaccgttttatcattattcatgcggatggagatacaaaccttggaacgaactgggccggatgggtttagaaatcagtcgattttttcagcattttccactgacaataaacaaaagggaatatcaaagtttcagtaaatcattcttgtgcgtttttatggtaaaaaaaaattagactttagtgtagtagctttattaagtttgtagtcataattgtaaaggggccagcagctatggagaactgcattt
gi|13 : tttacattatgttgcttaactatttatatatacatgtagttttcaaagcagaataaatctgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCC--C-A--TA-C-TTT-TA-CGA-A-T---GTAGAAA---C---AT-------G---TTTGCG-A--G-A------AGGTACAT--TTTTAAA--A-T-GATTT----AG-G-CT----GTGTT----TGA-ATAT-CA---G-T-----AA-AA-C---TTTTA-AA---TT-T---CGTTT-TGCGATA-GCCTTA-CA--TTA-AA--TCGCTGATA-TTTA-AAAA--AAA---T----A-GC-AGACATA--T-CAC-----T-A---A-A--C-C----TCTC--CAT--TATA---AAA-----A--CATGTT-TGAA-----AA-AAA---AC-T-A--CT-TTTTAG-AA-TT---T--CTaaattatttgaatctttgaaaactccagcataatttgataa
gi|14 : CCCGTC--C-A--CA-C-TTT-TAGCAG-A-A---CTAGAAA---C---AT-----A-----TT--CG-ATAG-A------CCGAGCGG--TT---AA--A-T-AATTCC---AG-GGCT----GTGTT----TGT-ATAT-TA---T-C----AAA-AA-CAAATTT----A---AT-TTG-CGTAC-AGC-ATA-CCT----TG--TTA-CA--TCG-CGATATTTTA-AAAAATAAA---T----A-GGCAAGAATT--T-CAC-----T-A---G-A--A-C----TCTC--CAT--TAT----GAA-----ACGCTG-TT-TGAA-C--CCA-TGA---CC-atttggagatttcatatcagc
gi|15 : -TATATTTTATT-T-TA---TGTAACAC-AT-------------GCTG-GC-------------------------TAA-CATTCAATCAAAAT-TTC-GCATTC---C-ATATATAGTCTTGG--------------GATATAT---------------TT---TGTG-CT--AAA-TTGC-GTGAATATT-TAAT-ATATAAAT-CAAATTAA-AGTACATAC-ATGTACGTATATCAA-A--TT-AAGATAGT-ATGCAA-TTGACGTTT----GTGTT
gi|16 : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AC-----AAG---TT--CG-ATGG-A------CCATACGG--TT---AA--G-G-GATT-C---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTA-AA---AT-T---CGTAC-AGCAATA-ACCGTA-TG--TTA-AA--TCGCCGATCTTTTA-AAAAATAAA---TTG----GG-GAAAATT--T-CAT-----C-A---GCG--C-C----TCTC--CAT--TATG---GAA-----AC-CAGAtattgatttgatcta
gi|17 : CCCGCC--C-A--C--C-TTT-TA-CAG-A-T---CAAAAAA---CG--ATG----AAT---TT--CG-ATGA-A------ACGTACGGA-TT---TA--A-G-GATT-C---AGCG-CT----GTGTT----TGA-ATAT-CA---T-TA---AAA-AA-C---TTT--TAA---AT-T----GTAC-AGCGATA-CCCGTA-TG--TTATAATGTCGCT--TATTTTAGAAGAATGAA---TTG--A-GG-ATAAATT--T-CAA-----C-A---ACA--C-C----TCTC--CAT--TA
gi|18 : g---CAC-TAA--ATC--TA-CTTTG-ATAAG-TT-GTAGTTA-GAT-AAA---TGTAT-------AA--------------aagg
gi|18 : gGTTTT-GT----TT--TTTTA---A-------GTGTCT-T-CGAT-ACATAA-T--T------------------------C-TAA--ATC--TA-CTTTG-ATAAG-TT-GTATTTA-GAT-AAA---TGTAT-------AA--------------ctatttatatacgtgngtttttttgttttgtttttttaagtgtcttcgatacataattctaaatctactttgataagttgtatttagataaatgtataactatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : gcactaaatctactttgataagttgtagttagataaatgtataactatttatatacgtgngttttttt-GCT-TTAAT---GTC--TTTCAA---AGTCTCCGTGA--TT--TT--G---AAA---AAGTGTCT-TTCGAT-ATATAA-TCTTATT----T----ACCAACA---CAC-TAA--ATG--TATCTTTG-AT-AA-TT-GTATTTACGATAAAT---TGTAT-------ctatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : tT-------------AA--AAT--ATGT-T-TTTGTTC----TAAACAAATG---ATAGTGTTTAC-AT-A-TT-TGC-A-AGGTG-AAATG-CACT-A---GT----------TT----TA---ATTTCTATTAT-TC-AT-CAAACATT--AATTTT-AC--A--CATTGCA-TATACTTTATTCTATAGAATGTAACAC-ATA-CACTGATGTATGCTG-GTGCCC-AT-GCAAGT-TG----TATTTAA-AACGCAATCAAAATAATC-GCATTC---A--T-TATATTCTTG--AGAT------AGGGCTATAA---------------TTATCTGTG-CTCAAAA-TTGTGGTGAATATTGTAGTAATATAAAT-C-AATTAA-A------AT-AT--ATATACATCGA-AATTT-AAAATAGT-GTGGGACTTGAAGTTT----GTtaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatatgtttttgttctaaacaaatgatagtgtttacatatttgcaaggtgaaatgcactagttttaatttctattattcatcaaacattaattttacacattgcatatactttattctatagaatgtaacacatacactgatgtatgctggtgcccatgcaagttgtatttaaaacgcaatcaaaataatcgcattcattatattcttgagatagggctataattatctgtgctcaaaattgtggtgaatattgtagtaatataaatcaattaaaatatatatacatcgaaatttaaaatagtgtgggacttgaagtttgttcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|21 : tgctttaatgtctttcaaagtctccgtgattttgaaaaagtgtctttcgatatataatcttatttaccaacacactaaatgtatctttgataattgtatttacgataaattgtattaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTAGAG--TT---AA--A-T-CATTT----AG-G-CT----GTGTT----TG-----T-CG---T-T------------------T-TAA---TT-T---CGTTT-AGCGATA-TC-------------AA------CGATATTCAA-AAAAGAAAG---CTG--A-AG--------------------T-G---GAA--C-C----TCTT--CAT--TATA---GAA-----AC-CTG-TT-TGAA-C-TTAA-CGA---CT-T-A--CC-TG---G-AA-TA---G--CTGGCTCTATG--CA-A---AG---G-tcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|23 : tagGCC--C-AAACAAC-TTT-TA-CAACC-C---CAAGAAAATTC---ATCCAAAAAA---AT--CGCATGATA------CCATACGGTTTT---AC--ATGCGAATTCAAAAG-G-CT----GTGTTTC--TGA-ATAT-CAACCTAT----AAACAATC---TTTTA-AA---AT-TCTCCGTACAAGCGATA-ACttaatatcag
gi|24 : agccaccagCCCGCC--CCA--CA-CGTTTGTA-CGA-C-CGATCAAAAAA---CC--AT-----A-T---TT--CG-ATGA-A------ACGTACGG--TT---TA--A-GCGA-TTC---AG-G-CT----GTATTCTTGTAA-GTAT------T-C----A------------TGATAA---AC-T---CGTAC-AGCGATATCCCGT--TGACTTA-AA--TCGCCGCTATTT
gi|28 : -ATATACATCGA-A--TT-GAAATAGT-GTGGAA-ATGACATTTACGAGTGTT
gi|29 : AA--GGGT--TTT-CAG-TTC-ACCCCACTC-CTC----GTAT----GGA-AAGCATGGTGAACT---GG-AAAC-CCTTAG-CTA-A-TGAAGAtattaatttgatataagtaaacagggatcgcatgcttcgtaaactt
gi|3 : gtcAAAATAAA---TTG--ATGG-AAA--TT--T-CAC-----CGA---GCA--CGC----TCTC--CAT--TATAT--GAA-----AC--AGATTGTGAA-CCTCCACTGA---CC-T-GACCT-T----G-AAGTC---T--CTCGCTCTATAATCATA---AA---T-AC-GATA--CAA--------C-ACGCTG-ATTTTG-AAT-GCT-TTCG-----TCCCGCT-TTCATT-AGTCCTTT-CAA---CGTCTC-GTGATTTT--TTTTA---AAA---AAGTGTCT-T-CG-T-ACATAA-T--TTTG----TACCGA---ACA---CAC-TAAACATCGTTACCTTTG-ATGAATTT-GTA-TTA-GAT-AAA---TGTA
gi|3 : -----TTCGACT---AGCCAAA--GGGT--GTCGCGGATGC-ACCC-GCTC-CCTATTAGCGC----GGGCGAGCGGAGTGGACC---GAAAAACACTG--G-CTACG-CG-AGACTTCTGGCTTTTGAAA--AATACACGC-TATAT---T----TAAATAAGTGTATATAA---TTAC-AT---TTATCT-A-A--TACAAATT-CATC-AAAGGTAA---CGATGTT----TA---GT-----GTGT-TCGGTACAAA-ATT--Aattatatacacttatttaaatatagcgtgtatttttcaaaagccagaagtctcgcgtagccagtgtttttcggtccactccgctcgcccgcgctaatagggagcgggtgcatccgcgacaccctttggctagtcgaagataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|3 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtaca-TAA--ATG--TA-ATTAT-ATACA-CT--TATTTA-AAT-ATAGCGTGTATTTTTCAAAA--------------GCCAG-----AAG-----TCTCGCGT--AGCCA----GTGT--TTTTCGG-TCC-ACTCCGCTCGCCC----GCGCTAATAGG-GAGCGGG-TGCATCCGCGA-CACC-CTTTGG-CTA-GTCGAAGAT-------------AAGAAAT--ACATGT-TTT---C----TAA-CAAATG---ATAGT-TTTACAATCATTT-TCC-ACAGGTGAAAATG-CACTAA---GT-A---TGA--TT----TA-----------TAC-TCGAT-ACAC-ATTAAAATTTT-ACCAA--CATTACAGTATA--ATATT-TATAAAATGTAACACAATA-CCA------GTGCTG-GCGTACGATGGCAGGCATGGTCATG-TTTA-GAT----TCAAAAT-ATCTGCATTT---CATT-TATATTCTT-GAAGATTAGGGGGGGGAAAAATTTGAGGTTTTTTGTATT---TGTG-CT--AAATTTGT-GTGAATATT-C-GT-ATATAAATGA-AATTAA-A------ATGATG-ATATACATCGACA--TTAAAAATAGTGGTGGAA-TTGACGTTgataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|30 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtacataattttgtaccgaacacactaaacatcgttacctttgatgaatttgtattagaA-TCA--T--CTAGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCA-T-AGTC--TT-catacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|33 : ttGCC--C-A--CA-C-TTT-TG-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--AG-ATGG-A------ACGTACGG--TT---AA--G-G-GATT
gi|4 : CCCCGCC--C----CA---TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAA---TT--CG-ATCG-A------CCATACGG--TT---AC--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-CCCGTA-TG--TTA-AA--GTGCCAATATTTTA-AAAAATGAA---TTGGGA-GG-AAAAATT--T-CAC-----T-A---GCA--C-C----ACTT--TAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AT-G-TA--CA---------C-ACG-TG-ATTT-G-AATTGCA-TT-G-----TCC-GCT-TTCATTTAGTC--TT-CAA---CGTCTC-GTGA--AT--TTTAA---AAA---AAGTGTCT-T-CGATTATATAA-T--TATT----T----A---ACA---CACCTAA--AGC--TA-CTTAG-ATAAA-TTTGAATTTA-GAT-ATT---TGTAC-------AA--------------GC-AC-----AA------TTCG-C----AGCCAAACAGGGT--TTT-CGG-TCC-ATTCCGCTC-CCC----GCAC----AGG-GAGCGGGGTGCACC---GA-AAAC-CTT--G-CTA-G-TGAAGAT-------------AA--AAT--CTGT-T-TTT---C----TAAACAAATG---ATAGT-TT-AC-ATCA-TT-TGCCA-AGGTG-AAATG-CACT-A---GT-A----GA--TT----TA---GT-----TTAT-TC-AT-CAAA-ATT--AATTTTCAC--AATCATTACA-TATATTTTAAT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCAC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGAAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAACA------AT-ATA-ATATACATCGA-A--TT--AAATAGT-GTGGAA-TTGACATTT----G-GTTCTAc
gi|5 : CCCCGCC--C-A--TA-C-TTT-TA-CAA-C-C---CAAGAAA---C---ATG----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AT--A-T-CATT-C---AA-G-CTCAGTGTGTT----TGA-ATAT-CA---T-TTAATAAA-AA-C---TTTTA-AA---AT-T---TGTAC-AGCGGTA-ACCGTA-TG--T------------GATAATTTA-AAGAATAAA---TTG----GA-AGAAATT--T-CACTTGACC-A---CCAGTC-C----TCTC--CAT--TATG---AAA-----AT-TAGATT-TGAA-C-TCCA-TGA---CC-TTC--CT-T----G-AA-TA---T--CTCGCTTTATG--CA-A---AA---G-AC-GATAGGTA---------CCACA-TG-ATTT-G-AAT-ACA-TT-G-----TCC-GCT-TTTAT--ATTC--TTTCAT---TGTTTC-GTGT--TT--TTTTTT--AAA---AAGTGTCT-T-CGAT-ACATAA-TA-TATTATACC----A---ACA---CAC-TAA--ATT--TA-CTTTC-ATAAA-TT-GTATTTA-GAT-AAA---TGTAT-------Aca
gi|6 : gCCCCGCC--C-A--TA-C-TTT-TA-CCA-C-C---CAAGAAA---CTTAATT----AAG---TT--CG-ATTG-A------ACGTACGG--TT---AA--G-G-GATT-C---AG-A-CT----GTGTT----TGA-ATAT-CA---T-C----AAA-A--C---TTTTA-AA---AT-T---CGTAC-AGCGATA-ACCGTA-TG--TTA-AA--CCGCCGATAGTTTA-AAAAATGAA---TTG--G-GG-AAAATTT--T-CAC-----C-A---GCA--C-C----TCTG--CAT--TATG---GAA-----GC-AAGATT-TGAA-C-TTCA-TGA---CCTT-C--CT-T----G-AA-TA---T--CTCGCTCTATA--C--A---AA---G-AT-GATA--C----------C-ACG-TG-ATCT-G-AAT-ACA-TT---------C-GAA-CACACG-AAGC--CT-C-G---CGTTTT--T----TT--TTTTA---ATT---TAGTGTCT-T-CGAT-ACATAATT--TATT----T----A---CCAACTCAT-TAA--ATC--TA-CTTTA-ATAAA-TT-GTATTTA-GAT-AAA---TGTAT-------AA--------------taactattt
gi|7 : aCCCGGCCACC-A--CA-C-TTT-TA-CAA-AAC---CAAAGAA---C---AT-----AAAAATTT--CG-ATGG-ACCAATAACGAACGC--TT---AAGCA-G-GCATTC---AG-G-CT----GTGTG-----GACATATTCA---T-TGGA-AAA-AG-C---TTTTATAAGAAATAT---CGTAC-AGCGATA-CCCGTAGTG--TTA-AA--TCGTCGATATTTTATAAAAATAAA---TTG----GG-AAAAATTACT-CAT-----CAA---GCA--C-CGACTTACC--CAG--TACGATTGAATTCACAC-CAGAGT-TGAA-CGTCCA-TTAACCCC-T-ATCCT-T----GAAA-TC---TTCTTCGCTCTA-A--TA-ATTTAATATG-ACGGATA--CAAGGGTCAGTC-GCA-TGAATTT-G-AAT-GCATTT-GCTCACCCC-GCTATTCA-T-AGTCT-TT-CAACCGCGTCT--GTTA--TT--Tctatttaaatat
gi|8 : gc-ATGTATATCGA-A--TT-AAAATAGT-GTAGAA-TTGACGTTT----GTGTTaa
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAACAAGGATCCAGTCGCGTCTTATCATTCTGTTTAGACCCGCCCACTCCTTTTATCAATTATTCATCGAAGGAATGGAAAGATTACAAACTTGACAGAAAACTCCCGTATGAGGTTTAGAAATCAGTCGTTTTTCAGCTTATTCCTAACATGACAATAAACAAAGGCACTATCAAAAGTTTTCAGAACTCATTCTTTGTGGCGTTTTATGTAAAAAAAATCTAAAACCCTTTAGTTAATTAGTTTTGAGTTGTAGTCAATGTAAAAGGTGACAGCGCGATATGGATACTGCACTTCATC
Unaligned ( gi|10 ): GTAAACGGGGATCGCACGCGGTCTATTCATATTCCTAAACTTTCTGTTTAGACCCGCCCACTCCGTTTATCATAGTGAAAGATCACAAACCTCGACGAAAACTGCCCGGTAGGAGGTTTAGAAATCAGTCGATTTTTTCAGAAACAAAGGGAACTATCAAAAGTTTTCAGAAATCATTCTTTGTGACGTTTATGTATTAAATTCTAACTTTAGTGTTGTAATTTTGAGTTTGTAGTCAATGTACATTGTAAAAAGGGGTCAGCACATATGGAGACTTCACTTGATCC
Unaligned ( gi|12 ): TCATTTTTGTTTAGACCCAACCACTTTGTCATTATTTATGAAGGATTACCATGATGAAAACTGCTTGTTAAACCTGGGTTTAAAATTCAGTTGATTTTTCAGCATTCCTCGTGACAAAAAACAAAGGGGACTATTAAAACTATTCAGAAACCATTGTTTGTGGTGTCTTAAGTTTAGAATTTTAACTTGTGTTGTACAATATAATTGCTTTTATTGACCATGGAAAAAGGGCATATGCCAATAGCTGTCTCACGTCTTCCTT
Unaligned ( gi|19 ): TTGGTTGCAGATTCAGCAAATTGTTGGCATTTCTTGAGGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTTACATTGTAATTGCTTTTACTGGCAACGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|20 ): TGGTTGCAGATTCAGCAAATTGTTCGGCATTTCTTGAGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTACATTGTAATTGCTTTTACTGGCAACGGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|22 ): TTACATATTCATTTAAATTTTTGGGCATTTCTCGAGACGAAAAACAAATGAGACATTGTCTGTGGTGTCTAAGTATGTAATTTTAACTTTTGTTTAACATAATTGCTTGTATTGGCAACGGGAAAAAGGGGGCAGCTACAATAGTTGTTTAACTCATAC
Unaligned ( gi|25 ): AAAACATTCCATAACCTCCTCGTGGTGATTTAAGGTATTATAGTTTTAACTTTTGTACGAAATAATTGCTTTTTACATCGGCCACGGAACAGGGTTCATCTTCTAATAACTGTTTTAACTCATCCTT
Unaligned ( gi|26 ): AAATTCAGTTTAGTTTTCGGATCCTGTGACGAAAACAAGGAGACTATTAACTTCTATTTAAAAGAAGCATTGCCTATAGGATATATGTAACTTTTGAATTAAAATTGTTTTTACTGGCCA
Unaligned ( gi|27 ): GTCTGTGGTATCTATGTATAAAATTTTAACTTTTGTACAGTAGAAGTATCTTTATTCACCAAAGAATTGGGGTCAAATCCAATAGCTATTTTACATTTTCC
Unaligned ( gi|31 ): TAATCTGAAACCATTGTCTGTGGTGTCTAGGTATATAATTTTAACTTTCGTACACTNATGTCTGCT
Unaligned ( gi|32 ): GTAGTAGTTTTGAGTTTGTAGTCAAATTAAAAAGGGGCCAAAACAAACGGAGACTGCACTTCATC
Unaligned ( gi|34 ): TAGTCAATGTAAAAAGGGGCCAGCACATATATGGAGACTGCACTTCATCC
Alignments
lowQualScore : 111 22222222222 111111 11111 1111 1111 111 111 1111 1111111 111 11111 1111 1111 1111111 11 222222222 2222222 111 11 1 1111 11 1111 111111111 3333333333333333333 111 1111111 888888888888888888888888888888888888888888 11 11 1 22222 1111 1111 11 3333333333333 1111 11111111 111 1 1 111 5555555555555555555555555555 1 11 1 11111 44444444444 44444444444444444444444 222222 2222222 555555555555555 111 11 111 222222 11 11 1111
lowQualScore : 55 3 55 3 3 3 3 7777777 666 333 55555555555 55 3 3 000000 77 555 44 888 3 11111 3 3 7777 2222 3 3 666 3 7777 3 44 666 777 666 3 111 3 44 44 55 4 777 1 0 8 666 5555 3 55 3 2222222 666 1 88 3 7777 55 55 111 00000 4 2 4 4 8 1 4 777 4 7777 5 5555 5 4 3333333 11 5 888 888 5 5 77 888888888 5 5 5 5 5 5 5 2222222 5 5 999 11 0 3333 11 2222 66 666666666 5 5 5 5 7777777777777777777 888 4 66 66 8 4 4 4 4 222 6666666 222222222222222222222222222222222222222222 0 11 11 6 8 8 3 8 00000 7777 8 7777 8 0 88 8 999 0 6666666666666 99 8888 6 6 88888888 111 6 6 6 1 3 2 6 6 3 6 6 111 8888888888888888888888888888 6 5 8 8 11 0 88888 8 0 3 1 8 0 44 88 33333333333 8 22222222222222222222222 8 5 8 8 333333 8 88 3333333 000000000000000 444 8 11 8 8 8 0 8 0 0 111 8 333333 8 88 5 33 55 5 5 4444
lowQualScore : .. . .. . . . . ....... ... ... ........... .. . . ...... .. ... .. ... . ..... . . .... .... . . ... . .... . .. ... ... ... . ... . .. .. .. . ... . . . ... .... . .. . ....... ... . .. . .... .. .. ... ..... . . . . . . . ... . .... . .... . . ....... .. . ... ... . . .. ......... . . . . . . . ....... . . ... .. . .... .. .... .. ......... . . . . ................... ... . .. .. . . . . . ... ....... .......................................... . .. .. . . . . . ..... .... . .... . . .. . ... . ............. .. .... . . ........ ... . . . . . . . . . . . ... ............................ . . . . .. . ..... . . . . . . .. .. ........... . ....................... . . . . ...... . .. ....... ............... ... . .. . . . . . . . ... . ...... . .. . .. .. . . ....
lowQualScore : 00 6 00 6 6 6 6 9999999 444 666 11111111111 00 6 6 555555 99 888 66 333 5 22222 6 6 7777 7777 6 6 444 6 7777 6 88 444 444 444 6 444 6 66 77 55 0 777 6 9 9 444 7777 6 00 6 2222222 444 4 66 6 7777 00 00 000 00000 0 3 4 4 9 1 4 888 4 6666 0 6666 0 4 8888888 99 0 888 888 0 7 99 666666666 7 7 7 7 7 7 7 9999999 0 0 666 99 0 9999 55 8888 99 666666666 7 7 7 7 0000000000000000000 888 4 11 11 9 4 4 4 4 222 2222222 999999999999999999999999999999999999999999 8 00 00 0 0 0 8 0 22222 0000 0 2222 0 6 44 0 222 8 7777777777777 22 5555 7 7 55555555 777 7 7 7 0 3 5 7 7 3 7 7 777 2222222222222222222222222222 7 0 0 0 00 0 55555 0 8 8 4 0 8 88 88 88888888888 0 88888888888888888888888 0 0 0 0 000000 0 88 6666666 000000000000000 000 0 00 0 0 0 8 0 8 8 000 0 000000 0 99 7 66 99 7 7 2222
consensus : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCATT-AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTTA---AAA---AAGTGTCT-T-CGAT-ACATAA-T--TATT----T----A---ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTT-CGG-TCC-ACTCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGCACC---GA-AAACCTTN-G-CTA-G-CGAAGAT-------------AA--AAT--ACGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATG-CACT-A---GT-A---TGA--TT----TA---GT-----TTAT-TCGAT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCGC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
Reference ( family-824 ) : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCATT-AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTTA---AAA---AAGTGTCT-T-CGAT-ACATAA-T--TATT----T----A---ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTT-CGG-TCC-ACTCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGCACC---GA-AAACCTTT-G-CTA-G-CGAAGAT-------------AA--AAT--ACGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATG-CACT-A---GT-A---TGA--TT----TA---GT-----TTAT-TCGAT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCGC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
gi|1 : AATAAACATTTG--G-GA-AACAATT--TGCAC-----C-ATAAGCAT-C-C----TGACAACATCTTATG---GAA-----AC-CAGATT-TGAAAC-TC---TGA---C--T-A--CCCT----G-TA-CCATGC--GTCGTCCTATAA-CA-A---AA---GGAC-GATA--CA---------C-A-G-TG-ATTT-GGAAT-GCA-TT-GA----TTC---T-TTCATA-TGCT--TT-CA----CTTCG--GTGA--TTACTTTTATTTAAACACAAGTGTCTGT-TGAT-ATATAA-TA-TATT----A----T---ACT---CAC-TAA--TCC--TA-CTTTGGATAAA-TT-GTATTTA-TA-GAA---TGTAT-------AACTATTTAATATACGGT-AGTTTTCAAGCACGTTTCGGCGGTAAGCCCAA--GGGTCTTTT-CGG-TCCTATTCCGCTC-CC-----GCAC----AGG-GAGCGGGGTGCAC----GA-AACCCTTG-G-CTA-G-CGAAGAT-------------TA--ATT-----T-T-TTG---CCTGTTAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATGCCACT-A---GT-AT--TGA--TTATGATACATGTA----TTATGTC-AT-CAAA-ATT--AATTTT-AC--A--CATTACA-T-TATTTTCAT-TATAATATGTAACAC--TATC--------AT-CTGTGCG-GC-CC-GC--GCATG----T--TTAAGCATGTAAT--AAAT-ATC-G-ATTCCATC-TT-TATATTCTTGGAAGAG------AGAGATATAT---------------TT---TGTGTCT--AAA-TTGT-GT-AATATT-TAGG-AT-T--AT-C-AATTAA-A------AT-AT--ATATACATCGA-AT-TT-AAAATAGT-GTGGAA-TTGACGTT------TGTTCTA
gi|11 : -------------AA--AAT--CTGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCATTTTGC-A-AGGTG-AAATG-CACT-A---GT-ATATTGA--TT----TAT--GTTAAA-TTAT-TTGAatgttatttacaacggaatggcatatgcggttctttcattctgtttagacccgccctaccgttttatcattattcatgcggatggagatacaaaccttggaacgaactgggccggatgggtttagaaatcagtcgattttttcagcattttccactgacaataaacaaaagggaatatcaaagtttcagtaaatcattcttgtgcgtttttatggtaaaaaaaaattagactttagtgtagtagctttattaagtttgtagtcataattgtaaaggggccagcagctatggagaactgcattt
gi|13 : tttacattatgttgcttaactatttatatatacatgtagttttcaaagcagaataaatctgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCC--C-A--TA-C-TTT-TA-CGA-A-T---GTAGAAA---C---AT-------G---TTTGCG-A--G-A------AGGTACAT--TTTTAAA--A-T-GATTT----AG-G-CT----GTGTT----TGA-ATAT-CA---G-T-----AA-AA-C---TTTTA-AA---TT-T---CGTTT-TGCGATA-GCCTTA-CA--TTA-AA--TCGCTGATA-TTTA-AAAA--AAA---T----A-GC-AGACATA--T-CAC-----T-A---A-A--C-C----TCTC--CAT--TATA---AAA-----A--CATGTT-TGAA-----AA-AAA---AC-T-A--CT-TTTTAG-AA-TT---T--CTatctttgaaaactccagcataatttgataa
gi|14 : CCCGTC--C-A--CA-C-TTT-TAGCAG-A-A---CTAGAAA---C---AT-----A-----TT--CG-ATAG-A------CCGAGCGG--TT---AA--A-T-AATTCC---AG-GGCT----GTGTT----TGT-ATAT-TA---T-C----AAA-AA-CAAATTT----A---AT-TTG-CGTAC-AGC-ATA-CCT----TG--TTA-CA--TCG-CGATATTTTA-AAAAATAAA---T----A-GGCAAGAATT--T-CAC-----T-A---G-A--A-C----TCTC--CAT--TAT----GAA-----ACGCTG-TT-TGAA-C--CCA-TGA---CC-atttggagatttcatatcagc
gi|15 : -TATATTTTATT-T-TA---TGTAACAC-AT-------------GCTG-GC-------------------------TAA-CATTCAATCAAAAT-TTC-GCATTC---C-ATATATAGTCTTGG--------------GATATAT---------------TT---TGTG-CT--AAA-TTGC-GTGAATATT-TAAT-ATATAAAT-CAAATTAA-AGTACATAC-ATGTACGTATATCAA-A--TT-AAGATAGT-ATGCAA-TTGACGTTT----GTGTT
gi|16 : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AC-----AAG---TT--CG-ATGG-A------CCATACGG--TT---AA--G-G-GA-TTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTA-AA---AT-T---CGTAC-AGCAATA-ACCGTA-TG--TTA-AA--TCGCCGATCTTTTA-AAAAATAAA---TTG----GG-GAAAATT--T-CAT-----C-A---GCG--C-C----TCTC--CAT--TATG---GAA-----AC-CAGAtattgatttgatcta
gi|17 : CCCGCC--C-A--C--C-TTT-TA-CAG-A-T---CAAAAAA---CG--ATG----AAT---TT--CG-ATGA-A------ACGTACGGA-TT---TA--A-G-GATT-C---AGCG-CT----GTGTT----TGA-ATAT-CA---T-TA---AAA-AA-C---TTT--TAA---AT-T----GTAC-AGCGATA-CCCGTA-TG--TTATAATGTCGCT--TATTTTAGAAGAATGAA---TTG--A-GG-ATAAATT--T-CAA-----C-A---ACA--C-C----TCTC--CAT--TA
gi|18 : g---CAC-TAA--ATC--TA-CTTTG-ATAAG-TT-GTAGTTA-GATAAA---TGTAT-------AA--------------aagg
gi|18 : gGTTTT-GT----TT--TTTTA---A-------GTGTCT-T-CGAT-ACATAA-T--T------------------------C-TAA--ATC--TA-CTTTG-ATAAG-TT-GTATTTA-GATAAA---TGTAT-------AA--------------ctatttatatacgtgngtttttttgttttgtttttttaagtgtcttcgatacataattctaaatctactttgataagttgtatttagataaatgtataactatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : gcactaaatctactttgataagttgtagttagataaatgtataactatttatatacgtgngttttttt-GCT-TTAAT---GTC--TTTCAA---AGTCTCCGTGA--TT--TT--G---AAA---AAGTGTCT-TTCGAT-ATATAA-TCTTATT----T----ACCAACA---CAC-TAA--ATG--TATCTTTG-AT-AA-TT-GTATTTACGATAAAT--TGTAT-------ctatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : tT-------------AA--AAT--ATGT-T-TTTGTTC----TAAACAAATG---ATAGTGTTTAC-A-T-A-TTTGC-A-AGGTG-AAATG-CACT-A---GT----------TT----TA---ATTTCTATTAT-TC-AT-CAAACATT--AATTTT-AC--A--CATTGCA-TATACTTTATTCTATAGAATGTAACAC-ATA-CACTGATGTATGCTG-GTGCCC-AT-GCAAGT-TG----TATTTAA-AACGCAATCAAAATAATC-GCATTC---A--T-TATATTCTTG--AGAT------AGGGCTATAA---------------TTATCTGTG-CTCAAAA-TTGTGGTGAATATTGTAGTAATATAAAT-C-AATTAA-A------AT-AT--ATATACATCGA-AATTT-AAAATAGT-GTGGGACTTGAAGTTT----GTtaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatatgtttttgttctaaacaaatgatagtgtttacatatttgcaaggtgaaatgcactagttttaatttctattattcatcaaacattaattttacacattgcatatactttattctatagaatgtaacacatacactgatgtatgctggtgcccatgcaagttgtatttaaaacgcaatcaaaataatcgcattcattatattcttgagatagggctataattatctgtgctcaaaattgtggtgaatattgtagtaatataaatcaattaaaatatatatacatcgaaatttaaaatagtgtgggacttgaagtttgttcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|21 : tgctttaatgtctttcaaagtctccgtgattttgaaaaagtgtctttcgatatataatcttatttaccaacacactaaatgtatctttgataattgtatttacgataaattgtattaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTAGAG--TT---AA--A-T-CATTT----AG-G-CT----GTGTT----TG-----T-CG---T-T------------------T-TAA---TT-T---CGTTT-AGCGATA-TC-------------AA------CGATATTCAA-AAAAGAAAG---CTG--A-AG--------------------T-G---GAA--C-C----TCTT--CAT--TATA---GAA-----AC-CTG-TT-TGAA-C-TTAA-CGA---CT-T-A--CC-TG---G-AA-TA---G--CTGGCTCTATG--CA-A---AG---G-tcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|23 : tagGCC--C-AAACAAC-TTT-TA-CAACC-C---CAAGAAAATTC---ATCCAAAAAA---AT--CGCATGATA------CCATACGGTTTT---AC--ATGCGAATTCAAAAG-G-CT----GTGTTTC--TGA-ATAT-CAACCTAT----AAACAATC---TTTTA-AA---AT-TCTCCGTACAAGCGATA-ACttaatatcag
gi|24 : agccaccagCCCGCC--CCA--CA-CGTTTGTA-CGA-C-CGATCAAAAAA---CC--AT-----A-T---TT--CG-ATGA-A------ACGTACGG--TT---TA--A-GCGA-TTC---AG-G-CT----GTATTCTTGTAA-GTAT------T-C----A------------TGATAA---AC-T---CGTAC-AGCGATATCCCGT--TGACTTA-AA--TCGCCGCTATTT
gi|28 : -ATATACATCGA-A--TT-GAAATAGT-GTGGAA-ATGACATTTACGAGTGTT
gi|29 : AA--GGGT--TTT-CAG-TTC-ACCCCACTC-CTC----GTAT----GGA-AAGCATGGTGAACT---GG-AAACCCTTAG-CTA-A-TGAAGAtattaatttgatataagtaaacagggatcgcatgcttcgtaaactt
gi|3 : gtcAAAATAAA---TTG--ATGG-AAA--TT--T-CAC-----CGA---GCA--CGC----TCTC--CAT--TATAT--GAA-----AC--AGATTGTGAA-CCTCCACTGA---CC-T-GACCT-T----G-AAGTC---T--CTCGCTCTATAATCATA---AA---T-AC-GATA--CAA--------C-ACGCTG-ATTTTG-AAT-GCT-TTCG-----TCCCGCT-TTCATT-AGTCCTTT-CAA---CGTCTC-GTGATTTT--TTTTA---AAA---AAGTGTCT-T-CG-T-ACATAA-T--TTTG----TACCGA---ACA---CAC-TAAACATCGTTACCTTTG-ATGAATTT-GTA-TTA-GATAAA---TGTA
gi|3 : -----TTCGACT---AGCCAAA--GGGT--GTCGCGGATGC-AC-CCGCTC-CCTATTAGCGC----GGGCGAGCGGAGTGGACC---GAAAAACACTG-G-CTACG-CG-AGACTTCTGGCTTTTGAAA--AATACACGC-TATAT---T----TAAATAAGTGTATATAA---TTAC-ATTTA-TCT---A-A--TACAAATT-CATC-AAAGGTAA---CGATGTT----TA---GT-----GTGT-TCGGTACAAA-ATT--Aattatatacacttatttaaatatagcgtgtatttttcaaaagccagaagtctcgcgtagccagtgtttttcggtccactccgctcgcccgcgctaatagggagcgggtgcatccgcgacaccctttggctagtcgaagataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|3 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtaca-TAA--ATG--TA-ATTAT-ATACA-CT--TATTTA-AATATAGCGTGTATTTTTCAAAA--------------GCCAG-----AAG-----TCTCGCGT--AGCCA----GTGT--TTTTCGG-TCC-ACTCCGCTCGCCC----GCGCTAATAGG-GAGCGGG-TGCATCCGCGA-CACCCTTT-GGCTA-GTCGAAGAT-------------AAGAAAT--ACATGT-TTT---C----TAA-CAAATG---ATAGT-TTTACAA-TCATTTTCC-ACAGGTGAAAATG-CACTAA---GT-A---TGA--TT----TA-----------TAC-TCGAT-ACAC-ATTAAAATTTT-ACCAA--CATTACAGTATA--ATATT-TATAAAATGTAACACAATA-CCA------GTGCTG-GCGTACGATGGCAGGCATGGTCATG-TTTA-GAT----TCAAAAT-ATCTGCATTT---CATT-TATATTCTT-GAAGATTAGGGGGGGGAAAAATTTGAGGTTTTTTGTATT---TGTG-CT--AAATTTGT-GTGAATATT-C-GT-ATATAAATGA-AATTAA-A------ATGATG-ATATACATCGACA--TTAAAAATAGTGGTGGAA-TTGACGTTgataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|30 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtacataattttgtaccgaacacactaaacatcgttacctttgatgaatttgtattagaA-TCA--T--CTAGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCA-T-AGTC--TT-catacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|33 : ttGCC--C-A--CA-C-TTT-TG-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--AG-ATGG-A------ACGTACGG--TT---AA--G-G-GATT
gi|4 : CCCCGCC--C----CA---TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAA---TT--CG-ATCG-A------CCATACGG--TT---AC--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-CCCGTA-TG--TTA-AA--GTGCCAATATTTTA-AAAAATGAA---TTGGGA-GG-AAAAATT--T-CAC-----T-A---GCA--C-C----ACTT--TAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AT-G-TA--CA---------C-ACG-TG-ATTT-G-AATTGCA-TT-G-----TCC-GCT-TTCATTTAGTC--TT-CAA---CGTCTC-GTGA--AT--TTTAA---AAA---AAGTGTCT-T-CGATTATATAA-T--TATT----T----A---ACA---CACCTAA--AGC--TA-CTTAG-ATAAA-TTTGAATTTA-GATATT---TGTAC-------AA--------------GC-AC-----AA------TTCG-C----AGCCAAACAGGGT--TTT-CGG-TCC-ATTCCGCTC-CCC----GCAC----AGG-GAGCGGGGTGCACC---GA-AAACCTT--G-CTA-G-TGAAGAT-------------AA--AAT--CTGT-T-TTT---C----TAAACAAATG---ATAGT-TT-AC-A-TCA-TTTGCCA-AGGTG-AAATG-CACT-A---GT-A----GA--TT----TA---GT-----TTAT-TC-AT-CAAA-ATT--AATTTTCAC--AATCATTACA-TATATTTTAAT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCAC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGAAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAACA------AT-ATA-ATATACATCGA-A--TT--AAATAGT-GTGGAA-TTGACATTT----G-GTTCTAc
gi|5 : CCCCGCC--C-A--TA-C-TTT-TA-CAA-C-C---CAAGAAA---C---ATG----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AT--A-T-CATT-C---AA-G-CTCAGTGTGTT----TGA-ATAT-CA---T-TTAATAAA-AA-C---TTTTA-AA---AT-T---TGTAC-AGCGGTA-ACCGTA-TG--T------------GATAATTTA-AAGAATAAA---TTG----GA-AGAAATT--T-CACTTGACC-A---CCAGTC-C----TCTC--CAT--TATG---AAA-----AT-TAGATT-TGAA-C-TCCA-TGA---CC-TTC--CT-T----G-AA-TA---T--CTCGCTTTATG--CA-A---AA---G-AC-GATAGGTA---------CCACA-TG-ATTT-G-AAT-ACA-TT-G-----TCC-GCT-TTTAT--ATTC--TTTCAT---TGTTTC-GTGT--TT--TTTTTT--AAA---AAGTGTCT-T-CGAT-ACATAA-TA-TATTATACC----A---ACA---CAC-TAA--ATT--TA-CTTTC-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------Aca
gi|6 : gCCCCGCC--C-A--TA-C-TTT-TA-CCA-C-C---CAAGAAA---CTTAATT----AAG---TT--CG-ATTG-A------ACGTACGG--TT---AA--G-G-GATT-C---AG-A-CT----GTGTT----TGA-ATAT-CA---T-C----AAA-A--C---TTTTA-AA---AT-T---CGTAC-AGCGATA-ACCGTA-TG--TTA-AA--CCGCCGATAGTTTA-AAAAATGAA---TTG--G-GG-AAAATTT--T-CAC-----C-A---GCA--C-C----TCTG--CAT--TATG---GAA-----GC-AAGATT-TGAA-C-TTCA-TGA---CCTT-C--CT-T----G-AA-TA---T--CTCGCTCTATA--C--A---AA---G-AT-GATA--C----------C-ACG-TG-ATCT-G-AAT-ACA-TT---------C-GAA-CACACG-AAGC--CT-C-G---CGTTTT--T----TT--TTTTA---ATT---TAGTGTCT-T-CGAT-ACATAATT--TATT----T----A---CCAACTCAT-TAA--ATC--TA-CTTTA-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------taactattt
gi|7 : aCCCGGCCACC-A--CA-C-TTT-TA-CAA-AAC---CAAAGAA---C---AT-----AAAAATTT--CG-ATGG-ACCAATAACGAACGC--TT---AAGCA-G-GCATTC---AG-G-CT----GTGTG-----GACATATTCA---T-TGGA-AAA-AG-C---TTTTATAAGAAATAT---CGTAC-AGCGATA-CCCGTAGTG--TTA-AA--TCGTCGATATTTTATAAAAATAAA---TTG----GG-AAAAATTACT-CAT-----CAA---GCA--C-CGACTTACC--CAG--TACGATTGAATTCACAC-CAGAGT-TGAA-CGTCCA-TTAACCCC-T-ATCCT-T----GAAA-TC---TTCTTCGCTCTA-A--TA-ATTTAATATG-ACGGATA--CAAGGGTCAGTC-GCA-TGAATTT-G-AAT-GCATTT-GCTCACCCC-GCTATTCA-T-AGTCT-TT-CAACCGCGTCT--GTTA--TT--Tctatttaaatat
gi|8 : gc-ATGTATATCGA-A--TT-AAAATAGT-GTAGAA-TTGACGTTT----GTGTTaa
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAACAAGGATCCAGTCGCGTCTTATCATTCTGTTTAGACCCGCCCACTCCTTTTATCAATTATTCATCGAAGGAATGGAAAGATTACAAACTTGACAGAAAACTCCCGTATGAGGTTTAGAAATCAGTCGTTTTTCAGCTTATTCCTAACATGACAATAAACAAAGGCACTATCAAAAGTTTTCAGAACTCATTCTTTGTGGCGTTTTATGTAAAAAAAATCTAAAACCCTTTAGTTAATTAGTTTTGAGTTGTAGTCAATGTAAAAGGTGACAGCGCGATATGGATACTGCACTTCATC
Unaligned ( gi|10 ): GTAAACGGGGATCGCACGCGGTCTATTCATATTCCTAAACTTTCTGTTTAGACCCGCCCACTCCGTTTATCATAGTGAAAGATCACAAACCTCGACGAAAACTGCCCGGTAGGAGGTTTAGAAATCAGTCGATTTTTTCAGAAACAAAGGGAACTATCAAAAGTTTTCAGAAATCATTCTTTGTGACGTTTATGTATTAAATTCTAACTTTAGTGTTGTAATTTTGAGTTTGTAGTCAATGTACATTGTAAAAAGGGGTCAGCACATATGGAGACTTCACTTGATCC
Unaligned ( gi|12 ): TCATTTTTGTTTAGACCCAACCACTTTGTCATTATTTATGAAGGATTACCATGATGAAAACTGCTTGTTAAACCTGGGTTTAAAATTCAGTTGATTTTTCAGCATTCCTCGTGACAAAAAACAAAGGGGACTATTAAAACTATTCAGAAACCATTGTTTGTGGTGTCTTAAGTTTAGAATTTTAACTTGTGTTGTACAATATAATTGCTTTTATTGACCATGGAAAAAGGGCATATGCCAATAGCTGTCTCACGTCTTCCTT
Unaligned ( gi|19 ): TTGGTTGCAGATTCAGCAAATTGTTGGCATTTCTTGAGGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTTACATTGTAATTGCTTTTACTGGCAACGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|20 ): TGGTTGCAGATTCAGCAAATTGTTCGGCATTTCTTGAGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTACATTGTAATTGCTTTTACTGGCAACGGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|22 ): TTACATATTCATTTAAATTTTTGGGCATTTCTCGAGACGAAAAACAAATGAGACATTGTCTGTGGTGTCTAAGTATGTAATTTTAACTTTTGTTTAACATAATTGCTTGTATTGGCAACGGGAAAAAGGGGGCAGCTACAATAGTTGTTTAACTCATAC
Unaligned ( gi|25 ): AAAACATTCCATAACCTCCTCGTGGTGATTTAAGGTATTATAGTTTTAACTTTTGTACGAAATAATTGCTTTTTACATCGGCCACGGAACAGGGTTCATCTTCTAATAACTGTTTTAACTCATCCTT
Unaligned ( gi|26 ): AAATTCAGTTTAGTTTTCGGATCCTGTGACGAAAACAAGGAGACTATTAACTTCTATTTAAAAGAAGCATTGCCTATAGGATATATGTAACTTTTGAATTAAAATTGTTTTTACTGGCCA
Unaligned ( gi|27 ): GTCTGTGGTATCTATGTATAAAATTTTAACTTTTGTACAGTAGAAGTATCTTTATTCACCAAAGAATTGGGGTCAAATCCAATAGCTATTTTACATTTTCC
Unaligned ( gi|31 ): TAATCTGAAACCATTGTCTGTGGTGTCTAGGTATATAATTTTAACTTTCGTACACTNATGTCTGCT
Unaligned ( gi|32 ): GTAGTAGTTTTGAGTTTGTAGTCAAATTAAAAAGGGGCCAAAACAAACGGAGACTGCACTTCATC
Unaligned ( gi|34 ): TAGTCAATGTAAAAAGGGGCCAGCACATATATGGAGACTGCACTTCATCC
Alignments
lowQualScore : 111 22222222222 111111 11111 1111 1111 111 111 1111 1111111 111 11111 1111 1111 1111111 11 222222222 2222222 111 11 1 1111 11 1111 111111111 3333333333333333333 111 1111111 888888888888888888888888888888888888888888 11 11 1 22222 1111 111 11 3333333333333 1111 11111111 111 1 1 111 5555555555555555555555555555 1 11 1 11111 44444444444 44444444444444444444444 222222 2222222 555555555555555 111 11 111 222222 11 11 1111
lowQualScore : 55 3 55 3 3 3 3 7777777 666 333 55555555555 55 3 3 000000 77 555 44 888 3 11111 3 3 7777 2222 3 3 666 3 7777 3 44 666 777 666 3 111 3 44 44 55 4 777 1 0 8 666 5555 3 55 3 2222222 666 1 88 3 7777 55 55 111 00000 4 2 4 4 8 1 4 777 4 7777 5 5555 5 4 3333333 11 5 888 888 5 5 77 888888888 5 5 5 5 5 5 5 2222222 5 5 999 11 0 3333 11 2222 66 666666666 5 5 5 5 7777777777777777777 888 4 66 66 8 4 4 4 4 222 6666666 222222222222222222222222222222222222222222 0 11 11 6 8 8 3 8 00000 7777 8 8 3 8 111 11 8 999 0 6666666666666 99 8888 6 6 88888888 111 6 6 6 1 3 2 6 6 3 6 6 111 8888888888888888888888888888 6 5 8 8 11 0 88888 8 0 3 1 8 0 44 88 33333333333 8 22222222222222222222222 8 5 8 8 333333 8 88 3333333 000000000000000 444 8 11 8 8 8 0 8 0 0 111 8 333333 8 88 5 33 55 5 5 4444
lowQualScore : .. . .. . . . . ....... ... ... ........... .. . . ...... .. ... .. ... . ..... . . .... .... . . ... . .... . .. ... ... ... . ... . .. .. .. . ... . . . ... .... . .. . ....... ... . .. . .... .. .. ... ..... . . . . . . . ... . .... . .... . . ....... .. . ... ... . . .. ......... . . . . . . . ....... . . ... .. . .... .. .... .. ......... . . . . ................... ... . .. .. . . . . . ... ....... .......................................... . .. .. . . . . . ..... .... . . . . ... .. . ... . ............. .. .... . . ........ ... . . . . . . . . . . . ... ............................ . . . . .. . ..... . . . . . . .. .. ........... . ....................... . . . . ...... . .. ....... ............... ... . .. . . . . . . . ... . ...... . .. . .. .. . . ....
lowQualScore : 00 6 00 6 6 6 6 9999999 444 666 11111111111 00 6 6 555555 99 888 66 333 5 22222 6 6 7777 7777 6 6 444 6 7777 6 88 444 444 444 6 444 6 66 77 55 0 777 6 9 9 444 7777 6 00 6 2222222 444 4 66 6 7777 00 00 000 00000 0 3 4 4 9 1 4 888 4 6666 0 6666 0 4 8888888 99 0 888 888 0 7 99 666666666 7 7 7 7 7 7 7 9999999 0 0 666 99 0 9999 55 8888 99 666666666 7 7 7 7 0000000000000000000 888 4 11 11 9 4 4 4 4 222 2222222 999999999999999999999999999999999999999999 8 00 00 0 0 0 8 0 22222 0000 0 0 2 0 888 00 8 222 8 7777777777777 22 5555 7 7 55555555 777 7 7 7 0 3 5 7 7 3 7 7 777 2222222222222222222222222222 7 0 0 0 00 0 55555 0 8 8 4 0 8 88 88 88888888888 0 88888888888888888888888 0 0 0 0 000000 0 88 6666666 000000000000000 000 0 00 0 0 0 8 0 8 8 000 0 000000 0 99 7 66 99 7 7 2222
consensus : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCATT-AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTTA---AAA---AAGTGTCT-T-CGAT-ACATAA-T--TATT----T----A---ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTT-CGG-TCC-ACTCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGCA-CCGA-AA-A-CC--TTGGCTA-G-CGAAGAT-------------AA--AAT--ACGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATG-CACT-A---GT-A---TGA--TT----TA---GT-----TTAT-TCGAT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCGC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
Reference ( family-824 ) : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCATT-AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTTA---AAA---AAGTGTCT-T-CGAT-ACATAA-T--TATT----T----A---ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTT-CGG-TCC-ACTCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGCA-CCGA-AA-A-CC--TTNGCTA-G-CGAAGAT-------------AA--AAT--ACGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATG-CACT-A---GT-A---TGA--TT----TA---GT-----TTAT-TCGAT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCGC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
gi|1 : AATAAACATTTG--G-GA-AACAATT--TGCAC-----C-ATAAGCAT-C-C----TGACAACATCTTATG---GAA-----AC-CAGATT-TGAAAC-TC---TGA---C--T-A--CCCT----G-TA-CCATGC--GTCGTCCTATAA-CA-A---AA---GGAC-GATA--CA---------C-A-G-TG-ATTT-GGAAT-GCA-TT-GA----TTC---T-TTCATA-TGCT--TT-CA----CTTCG--GTGA--TTACTTTTATTTAAACACAAGTGTCTGT-TGAT-ATATAA-TA-TATT----A----T---ACT---CAC-TAA--TCC--TA-CTTTGGATAAA-TT-GTATTTA-TA-GAA---TGTAT-------AACTATTTAATATACGGT-AGTTTTCAAGCACGTTTCGGCGGTAAGCCCAA--GGGTCTTTT-CGG-TCCTATTCCGCTC-CC-----GCAC----AGG-GAGCGGGGTGCA-C-GA-AA-C-CC--TTGGCTA-G-CGAAGAT-------------TA--ATT-----T-T-TTG---CCTGTTAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATGCCACT-A---GT-AT--TGA--TTATGATACATGTA----TTATGTC-AT-CAAA-ATT--AATTTT-AC--A--CATTACA-T-TATTTTCAT-TATAATATGTAACAC--TATC--------AT-CTGTGCG-GC-CC-GC--GCATG----T--TTAAGCATGTAAT--AAAT-ATC-G-ATTCCATC-TT-TATATTCTTGGAAGAG------AGAGATATAT---------------TT---TGTGTCT--AAA-TTGT-GT-AATATT-TAGG-AT-T--AT-C-AATTAA-A------AT-AT--ATATACATCGA-AT-TT-AAAATAGT-GTGGAA-TTGACGTT------TGTTCTA
gi|11 : -------------AA--AAT--CTGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCATTTTGC-A-AGGTG-AAATG-CACT-A---GT-ATATTGA--TT----TAT--GTTAAA-TTAT-TTGAatgttatttacaacggaatggcatatgcggttctttcattctgtttagacccgccctaccgttttatcattattcatgcggatggagatacaaaccttggaacgaactgggccggatgggtttagaaatcagtcgattttttcagcattttccactgacaataaacaaaagggaatatcaaagtttcagtaaatcattcttgtgcgtttttatggtaaaaaaaaattagactttagtgtagtagctttattaagtttgtagtcataattgtaaaggggccagcagctatggagaactgcattt
gi|13 : tttacattatgttgcttaactatttatatatacatgtagttttcaaagcagaataaatctgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCC--C-A--TA-C-TTT-TA-CGA-A-T---GTAGAAA---C---AT-------G---TTTGCG-A--G-A------AGGTACAT--TTTTAAA--A-T-GATTT----AG-G-CT----GTGTT----TGA-ATAT-CA---G-T-----AA-AA-C---TTTTA-AA---TT-T---CGTTT-TGCGATA-GCCTTA-CA--TTA-AA--TCGCTGATA-TTTA-AAAA--AAA---T----A-GC-AGACATA--T-CAC-----T-A---A-A--C-C----TCTC--CAT--TATA---AAA-----A--CATGTT-TGAA-----AA-AAA---AC-T-A--CT-TTTTAG-AA-TT---T--CTatctttgaaaactccagcataatttgataa
gi|14 : CCCGTC--C-A--CA-C-TTT-TAGCAG-A-A---CTAGAAA---C---AT-----A-----TT--CG-ATAG-A------CCGAGCGG--TT---AA--A-T-AATTCC---AG-GGCT----GTGTT----TGT-ATAT-TA---T-C----AAA-AA-CAAATTT----A---AT-TTG-CGTAC-AGC-ATA-CCT----TG--TTA-CA--TCG-CGATATTTTA-AAAAATAAA---T----A-GGCAAGAATT--T-CAC-----T-A---G-A--A-C----TCTC--CAT--TAT----GAA-----ACGCTG-TT-TGAA-C--CCA-TGA---CC-atttggagatttcatatcagc
gi|15 : -TATATTTTATT-T-TA---TGTAACAC-AT-------------GCTG-GC-------------------------TAA-CATTCAATCAAAAT-TTC-GCATTC---C-ATATATAGTCTTGG--------------GATATAT---------------TT---TGTG-CT--AAA-TTGC-GTGAATATT-TAAT-ATATAAAT-CAAATTAA-AGTACATAC-ATGTACGTATATCAA-A--TT-AAGATAGT-ATGCAA-TTGACGTTT----GTGTT
gi|16 : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AC-----AAG---TT--CG-ATGG-A------CCATACGG--TT---AA--G-G-GA-TTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTA-AA---AT-T---CGTAC-AGCAATA-ACCGTA-TG--TTA-AA--TCGCCGATCTTTTA-AAAAATAAA---TTG----GG-GAAAATT--T-CAT-----C-A---GCG--C-C----TCTC--CAT--TATG---GAA-----AC-CAGAtattgatttgatcta
gi|17 : CCCGCC--C-A--C--C-TTT-TA-CAG-A-T---CAAAAAA---CG--ATG----AAT---TT--CG-ATGA-A------ACGTACGGA-TT---TA--A-G-GATT-C---AGCG-CT----GTGTT----TGA-ATAT-CA---T-TA---AAA-AA-C---TTT--TAA---AT-T----GTAC-AGCGATA-CCCGTA-TG--TTATAATGTCGCT--TATTTTAGAAGAATGAA---TTG--A-GG-ATAAATT--T-CAA-----C-A---ACA--C-C----TCTC--CAT--TA
gi|18 : g---CAC-TAA--ATC--TA-CTTTG-ATAAG-TT-GTAGTTA-GATAAA---TGTAT-------AA--------------aagg
gi|18 : gGTTTT-GT----TT--TTTTA---A-------GTGTCT-T-CGAT-ACATAA-T--T------------------------C-TAA--ATC--TA-CTTTG-ATAAG-TT-GTATTTA-GATAAA---TGTAT-------AA--------------ctatttatatacgtgngtttttttgttttgtttttttaagtgtcttcgatacataattctaaatctactttgataagttgtatttagataaatgtataactatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : gcactaaatctactttgataagttgtagttagataaatgtataactatttatatacgtgngttttttt-GCT-TTAAT---GTC--TTTCAA---AGTCTCCGTGA--TT--TT--G---AAA---AAGTGTCT-TTCGAT-ATATAA-TCTTATT----T----ACCAACA---CAC-TAA--ATG--TATCTTTG-AT-AA-TT-GTATTTACGATAAAT--TGTAT-------ctatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : tT-------------AA--AAT--ATGT-T-TTTGTTC----TAAACAAATG---ATAGTGTTTAC-A-T-A-TTTGC-A-AGGTG-AAATG-CACT-A---GT----------TT----TA---ATTTCTATTAT-TC-AT-CAAACATT--AATTTT-AC--A--CATTGCA-TATACTTTATTCTATAGAATGTAACAC-ATA-CACTGATGTATGCTG-GTGCCC-AT-GCAAGT-TG----TATTTAA-AACGCAATCAAAATAATC-GCATTC---A--T-TATATTCTTG--AGAT------AGGGCTATAA---------------TTATCTGTG-CTCAAAA-TTGTGGTGAATATTGTAGTAATATAAAT-C-AATTAA-A------AT-AT--ATATACATCGA-AATTT-AAAATAGT-GTGGGACTTGAAGTTT----GTtaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatatgtttttgttctaaacaaatgatagtgtttacatatttgcaaggtgaaatgcactagttttaatttctattattcatcaaacattaattttacacattgcatatactttattctatagaatgtaacacatacactgatgtatgctggtgcccatgcaagttgtatttaaaacgcaatcaaaataatcgcattcattatattcttgagatagggctataattatctgtgctcaaaattgtggtgaatattgtagtaatataaatcaattaaaatatatatacatcgaaatttaaaatagtgtgggacttgaagtttgttcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|21 : tgctttaatgtctttcaaagtctccgtgattttgaaaaagtgtctttcgatatataatcttatttaccaacacactaaatgtatctttgataattgtatttacgataaattgtattaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTAGAG--TT---AA--A-T-CATTT----AG-G-CT----GTGTT----TG-----T-CG---T-T------------------T-TAA---TT-T---CGTTT-AGCGATA-TC-------------AA------CGATATTCAA-AAAAGAAAG---CTG--A-AG--------------------T-G---GAA--C-C----TCTT--CAT--TATA---GAA-----AC-CTG-TT-TGAA-C-TTAA-CGA---CT-T-A--CC-TG---G-AA-TA---G--CTGGCTCTATG--CA-A---AG---G-tcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|23 : tagGCC--C-AAACAAC-TTT-TA-CAACC-C---CAAGAAAATTC---ATCCAAAAAA---AT--CGCATGATA------CCATACGGTTTT---AC--ATGCGAATTCAAAAG-G-CT----GTGTTTC--TGA-ATAT-CAACCTAT----AAACAATC---TTTTA-AA---AT-TCTCCGTACAAGCGATA-ACttaatatcag
gi|24 : agccaccagCCCGCC--CCA--CA-CGTTTGTA-CGA-C-CGATCAAAAAA---CC--AT-----A-T---TT--CG-ATGA-A------ACGTACGG--TT---TA--A-GCGA-TTC---AG-G-CT----GTATTCTTGTAA-GTAT------T-C----A------------TGATAA---AC-T---CGTAC-AGCGATATCCCGT--TGACTTA-AA--TCGCCGCTATTT
gi|28 : -ATATACATCGA-A--TT-GAAATAGT-GTGGAA-ATGACATTTACGAGTGTT
gi|29 : AA--GGGT--TTT-CAG-TTC-ACCCCACTC-CTC----GTAT----GGA-AAGCATGGTGAA-CTGG-AA-ACCC--TTAGCTA-A-TGAAGAtattaatttgatataagtaaacagggatcgcatgcttcgtaaactt
gi|3 : gtcAAAATAAA---TTG--ATGG-AAA--TT--T-CAC-----CGA---GCA--CGC----TCTC--CAT--TATAT--GAA-----AC--AGATTGTGAA-CCTCCACTGA---CC-T-GACCT-T----G-AAGTC---T--CTCGCTCTATAATCATA---AA---T-AC-GATA--CAA--------C-ACGCTG-ATTTTG-AAT-GCT-TTCG-----TCCCGCT-TTCATT-AGTCCTTT-CAA---CGTCTC-GTGATTTT--TTTTA---AAA---AAGTGTCT-T-CG-T-ACATAA-T--TTTG----TACCGA---ACA---CAC-TAAACATCGTTACCTTTG-ATGAATTT-GTA-TTA-GATAAA---TGTA
gi|3 : -----TTCGACT---AGCCAAA--GGGT--GTCGCGGATGC-AC-CCGCTC-CCTATTAGCGC----GGGCGAGCGGAGTGGA-CCGAAAA-A-CA--CTGGCTACG-CG-AGACTTCTGGCTTTTGAAA--AATACACGC-TATAT---T----TAAATAAGTGTATATAA---TTAC-ATTTA-TCT---A-A--TACAAATT-CATC-AAAGGTAA---CGATGTT----TA---GT-----GTGT-TCGGTACAAA-ATT--Aattatatacacttatttaaatatagcgtgtatttttcaaaagccagaagtctcgcgtagccagtgtttttcggtccactccgctcgcccgcgctaatagggagcgggtgcatccgcgacaccctttggctagtcgaagataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|3 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtaca-TAA--ATG--TA-ATTAT-ATACA-CT--TATTTA-AATATAGCGTGTATTTTTCAAAA--------------GCCAG-----AAG-----TCTCGCGT--AGCCA----GTGT--TTTTCGG-TCC-ACTCCGCTCGCCC----GCGCTAATAGG-GAGCGGG-TGCATCCGC-GACA-CCCTTTGGCTA-GTCGAAGAT-------------AAGAAAT--ACATGT-TTT---C----TAA-CAAATG---ATAGT-TTTACAA-TCATTTTCC-ACAGGTGAAAATG-CACTAA---GT-A---TGA--TT----TA-----------TAC-TCGAT-ACAC-ATTAAAATTTT-ACCAA--CATTACAGTATA--ATATT-TATAAAATGTAACACAATA-CCA------GTGCTG-GCGTACGATGGCAGGCATGGTCATG-TTTA-GAT----TCAAAAT-ATCTGCATTT---CATT-TATATTCTT-GAAGATTAGGGGGGGGAAAAATTTGAGGTTTTTTGTATT---TGTG-CT--AAATTTGT-GTGAATATT-C-GT-ATATAAATGA-AATTAA-A------ATGATG-ATATACATCGACA--TTAAAAATAGTGGTGGAA-TTGACGTTgataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|30 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtacataattttgtaccgaacacactaaacatcgttacctttgatgaatttgtattagaA-TCA--T--CTAGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCA-T-AGTC--TT-catacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|33 : ttGCC--C-A--CA-C-TTT-TG-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--AG-ATGG-A------ACGTACGG--TT---AA--G-G-GATT
gi|4 : CCCCGCC--C----CA---TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAA---TT--CG-ATCG-A------CCATACGG--TT---AC--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-CCCGTA-TG--TTA-AA--GTGCCAATATTTTA-AAAAATGAA---TTGGGA-GG-AAAAATT--T-CAC-----T-A---GCA--C-C----ACTT--TAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AT-G-TA--CA---------C-ACG-TG-ATTT-G-AATTGCA-TT-G-----TCC-GCT-TTCATTTAGTC--TT-CAA---CGTCTC-GTGA--AT--TTTAA---AAA---AAGTGTCT-T-CGATTATATAA-T--TATT----T----A---ACA---CACCTAA--AGC--TA-CTTAG-ATAAA-TTTGAATTTA-GATATT---TGTAC-------AA--------------GC-AC-----AA------TTCG-C----AGCCAAACAGGGT--TTT-CGG-TCC-ATTCCGCTC-CCC----GCAC----AGG-GAGCGGGGTGCA-CCGA-AA-A-CC--TT-GCTA-G-TGAAGAT-------------AA--AAT--CTGT-T-TTT---C----TAAACAAATG---ATAGT-TT-AC-A-TCA-TTTGCCA-AGGTG-AAATG-CACT-A---GT-A----GA--TT----TA---GT-----TTAT-TC-AT-CAAA-ATT--AATTTTCAC--AATCATTACA-TATATTTTAAT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCAC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGAAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAACA------AT-ATA-ATATACATCGA-A--TT--AAATAGT-GTGGAA-TTGACATTT----G-GTTCTAc
gi|5 : CCCCGCC--C-A--TA-C-TTT-TA-CAA-C-C---CAAGAAA---C---ATG----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AT--A-T-CATT-C---AA-G-CTCAGTGTGTT----TGA-ATAT-CA---T-TTAATAAA-AA-C---TTTTA-AA---AT-T---TGTAC-AGCGGTA-ACCGTA-TG--T------------GATAATTTA-AAGAATAAA---TTG----GA-AGAAATT--T-CACTTGACC-A---CCAGTC-C----TCTC--CAT--TATG---AAA-----AT-TAGATT-TGAA-C-TCCA-TGA---CC-TTC--CT-T----G-AA-TA---T--CTCGCTTTATG--CA-A---AA---G-AC-GATAGGTA---------CCACA-TG-ATTT-G-AAT-ACA-TT-G-----TCC-GCT-TTTAT--ATTC--TTTCAT---TGTTTC-GTGT--TT--TTTTTT--AAA---AAGTGTCT-T-CGAT-ACATAA-TA-TATTATACC----A---ACA---CAC-TAA--ATT--TA-CTTTC-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------Aca
gi|6 : gCCCCGCC--C-A--TA-C-TTT-TA-CCA-C-C---CAAGAAA---CTTAATT----AAG---TT--CG-ATTG-A------ACGTACGG--TT---AA--G-G-GATT-C---AG-A-CT----GTGTT----TGA-ATAT-CA---T-C----AAA-A--C---TTTTA-AA---AT-T---CGTAC-AGCGATA-ACCGTA-TG--TTA-AA--CCGCCGATAGTTTA-AAAAATGAA---TTG--G-GG-AAAATTT--T-CAC-----C-A---GCA--C-C----TCTG--CAT--TATG---GAA-----GC-AAGATT-TGAA-C-TTCA-TGA---CCTT-C--CT-T----G-AA-TA---T--CTCGCTCTATA--C--A---AA---G-AT-GATA--C----------C-ACG-TG-ATCT-G-AAT-ACA-TT---------C-GAA-CACACG-AAGC--CT-C-G---CGTTTT--T----TT--TTTTA---ATT---TAGTGTCT-T-CGAT-ACATAATT--TATT----T----A---CCAACTCAT-TAA--ATC--TA-CTTTA-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------taactattt
gi|7 : aCCCGGCCACC-A--CA-C-TTT-TA-CAA-AAC---CAAAGAA---C---AT-----AAAAATTT--CG-ATGG-ACCAATAACGAACGC--TT---AAGCA-G-GCATTC---AG-G-CT----GTGTG-----GACATATTCA---T-TGGA-AAA-AG-C---TTTTATAAGAAATAT---CGTAC-AGCGATA-CCCGTAGTG--TTA-AA--TCGTCGATATTTTATAAAAATAAA---TTG----GG-AAAAATTACT-CAT-----CAA---GCA--C-CGACTTACC--CAG--TACGATTGAATTCACAC-CAGAGT-TGAA-CGTCCA-TTAACCCC-T-ATCCT-T----GAAA-TC---TTCTTCGCTCTA-A--TA-ATTTAATATG-ACGGATA--CAAGGGTCAGTC-GCA-TGAATTT-G-AAT-GCATTT-GCTCACCCC-GCTATTCA-T-AGTCT-TT-CAACCGCGTCT--GTTA--TT--Tctatttaaatat
gi|8 : gc-ATGTATATCGA-A--TT-AAAATAGT-GTAGAA-TTGACGTTT----GTGTTaa
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAACAAGGATCCAGTCGCGTCTTATCATTCTGTTTAGACCCGCCCACTCCTTTTATCAATTATTCATCGAAGGAATGGAAAGATTACAAACTTGACAGAAAACTCCCGTATGAGGTTTAGAAATCAGTCGTTTTTCAGCTTATTCCTAACATGACAATAAACAAAGGCACTATCAAAAGTTTTCAGAACTCATTCTTTGTGGCGTTTTATGTAAAAAAAATCTAAAACCCTTTAGTTAATTAGTTTTGAGTTGTAGTCAATGTAAAAGGTGACAGCGCGATATGGATACTGCACTTCATC
Unaligned ( gi|10 ): GTAAACGGGGATCGCACGCGGTCTATTCATATTCCTAAACTTTCTGTTTAGACCCGCCCACTCCGTTTATCATAGTGAAAGATCACAAACCTCGACGAAAACTGCCCGGTAGGAGGTTTAGAAATCAGTCGATTTTTTCAGAAACAAAGGGAACTATCAAAAGTTTTCAGAAATCATTCTTTGTGACGTTTATGTATTAAATTCTAACTTTAGTGTTGTAATTTTGAGTTTGTAGTCAATGTACATTGTAAAAAGGGGTCAGCACATATGGAGACTTCACTTGATCC
Unaligned ( gi|12 ): TCATTTTTGTTTAGACCCAACCACTTTGTCATTATTTATGAAGGATTACCATGATGAAAACTGCTTGTTAAACCTGGGTTTAAAATTCAGTTGATTTTTCAGCATTCCTCGTGACAAAAAACAAAGGGGACTATTAAAACTATTCAGAAACCATTGTTTGTGGTGTCTTAAGTTTAGAATTTTAACTTGTGTTGTACAATATAATTGCTTTTATTGACCATGGAAAAAGGGCATATGCCAATAGCTGTCTCACGTCTTCCTT
Unaligned ( gi|19 ): TTGGTTGCAGATTCAGCAAATTGTTGGCATTTCTTGAGGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTTACATTGTAATTGCTTTTACTGGCAACGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|20 ): TGGTTGCAGATTCAGCAAATTGTTCGGCATTTCTTGAGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTACATTGTAATTGCTTTTACTGGCAACGGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|22 ): TTACATATTCATTTAAATTTTTGGGCATTTCTCGAGACGAAAAACAAATGAGACATTGTCTGTGGTGTCTAAGTATGTAATTTTAACTTTTGTTTAACATAATTGCTTGTATTGGCAACGGGAAAAAGGGGGCAGCTACAATAGTTGTTTAACTCATAC
Unaligned ( gi|25 ): AAAACATTCCATAACCTCCTCGTGGTGATTTAAGGTATTATAGTTTTAACTTTTGTACGAAATAATTGCTTTTTACATCGGCCACGGAACAGGGTTCATCTTCTAATAACTGTTTTAACTCATCCTT
Unaligned ( gi|26 ): AAATTCAGTTTAGTTTTCGGATCCTGTGACGAAAACAAGGAGACTATTAACTTCTATTTAAAAGAAGCATTGCCTATAGGATATATGTAACTTTTGAATTAAAATTGTTTTTACTGGCCA
Unaligned ( gi|27 ): GTCTGTGGTATCTATGTATAAAATTTTAACTTTTGTACAGTAGAAGTATCTTTATTCACCAAAGAATTGGGGTCAAATCCAATAGCTATTTTACATTTTCC
Unaligned ( gi|31 ): TAATCTGAAACCATTGTCTGTGGTGTCTAGGTATATAATTTTAACTTTCGTACACTNATGTCTGCT
Unaligned ( gi|32 ): GTAGTAGTTTTGAGTTTGTAGTCAAATTAAAAAGGGGCCAAAACAAACGGAGACTGCACTTCATC
Unaligned ( gi|34 ): TAGTCAATGTAAAAAGGGGCCAGCACATATATGGAGACTGCACTTCATCC
Alignments
lowQualScore : 111 22222222222 111111 11111 1111 1111 111 111 1111 1111111 111 11111 1111 1111 1111111 11 222222222 2222222 111 11 1 1111 11 1111 111111111 3333333333333333333 111 1111111 888888888888888888888888888888888888888888 11 11 1 22222 1111 111 11 3333333333333 1111 11111111 111 1 1 111 5555555555555555555555555555 1 11 1 11111 44444444444 44444444444444444444444 222222 2222222 555555555555555 111 11 111 222222 11 11 1111
lowQualScore : 55 3 55 3 3 3 3 7777777 666 333 55555555555 55 3 3 000000 77 555 44 888 3 11111 3 3 7777 2222 3 3 666 3 7777 3 44 666 777 666 3 111 3 44 44 55 4 777 1 0 8 666 5555 3 55 3 2222222 666 1 88 3 7777 55 55 111 00000 4 2 4 4 8 1 4 777 4 7777 5 5555 5 4 3333333 11 5 888 888 5 5 77 888888888 5 5 5 5 5 5 5 2222222 5 5 999 11 0 3333 11 2222 66 666666666 5 5 5 5 7777777777777777777 888 4 66 66 8 4 4 4 4 222 6666666 222222222222222222222222222222222222222222 0 11 11 6 8 8 3 8 00000 7777 8 8 3 8 111 11 999 0 6666666666666 99 8888 6 6 88888888 111 6 6 6 1 3 2 6 6 3 6 6 111 8888888888888888888888888888 6 5 8 8 11 0 88888 8 0 3 1 8 0 44 88 33333333333 8 22222222222222222222222 8 5 8 8 333333 8 88 3333333 000000000000000 444 8 11 8 8 8 0 8 0 0 111 8 333333 8 88 5 33 55 5 5 4444
lowQualScore : .. . .. . . . . ....... ... ... ........... .. . . ...... .. ... .. ... . ..... . . .... .... . . ... . .... . .. ... ... ... . ... . .. .. .. . ... . . . ... .... . .. . ....... ... . .. . .... .. .. ... ..... . . . . . . . ... . .... . .... . . ....... .. . ... ... . . .. ......... . . . . . . . ....... . . ... .. . .... .. .... .. ......... . . . . ................... ... . .. .. . . . . . ... ....... .......................................... . .. .. . . . . . ..... .... . . . . ... .. ... . ............. .. .... . . ........ ... . . . . . . . . . . . ... ............................ . . . . .. . ..... . . . . . . .. .. ........... . ....................... . . . . ...... . .. ....... ............... ... . .. . . . . . . . ... . ...... . .. . .. .. . . ....
lowQualScore : 00 6 00 6 6 6 6 9999999 444 666 11111111111 00 6 6 555555 99 888 66 333 5 22222 6 6 7777 7777 6 6 444 6 7777 6 88 444 444 444 6 444 6 66 77 55 0 777 6 9 9 444 7777 6 00 6 2222222 444 4 66 6 7777 00 00 000 00000 0 3 4 4 9 1 4 888 4 6666 0 6666 0 4 8888888 99 0 888 888 0 7 99 666666666 7 7 7 7 7 7 7 9999999 0 0 666 99 0 9999 55 8888 99 666666666 7 7 7 7 0000000000000000000 888 4 11 11 9 4 4 4 4 222 2222222 999999999999999999999999999999999999999999 8 00 00 0 0 0 8 0 22222 0000 0 0 2 0 888 00 222 8 7777777777777 22 5555 7 7 55555555 777 7 7 7 0 3 5 7 7 3 7 7 777 2222222222222222222222222222 7 0 0 0 00 0 55555 0 8 8 4 0 8 88 88 88888888888 0 88888888888888888888888 0 0 0 0 000000 0 88 6666666 000000000000000 000 0 00 0 0 0 8 0 8 8 000 0 000000 0 99 7 66 99 7 7 2222
consensus : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCATT-AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTTA---AAA---AAGTGTCT-T-CGAT-ACATAA-T--TATT----T----A---ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTT-CGG-TCC-ACTCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGCA-CCGA-AA-A-CC--TTGGCTA-G-CGAAGAT-------------AA--AAT--ACGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATG-CACT-A---GT-A---TGA--TT----TA---GT-----TTAT-TCGAT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCGC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
Reference ( family-824 ) : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCATT-AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTTA---AAA---AAGTGTCT-T-CGAT-ACATAA-T--TATT----T----A---ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTT-CGG-TCC-ACTCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGCA-CCGA-AA-A-CC--TTGGCTA-G-CGAAGAT-------------AA--AAT--ACGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATG-CACT-A---GT-A---TGA--TT----TA---GT-----TTAT-TCGAT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCGC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
gi|1 : AATAAACATTTG--G-GA-AACAATT--TGCAC-----C-ATAAGCAT-C-C----TGACAACATCTTATG---GAA-----AC-CAGATT-TGAAAC-TC---TGA---C--T-A--CCCT----G-TA-CCATGC--GTCGTCCTATAA-CA-A---AA---GGAC-GATA--CA---------C-A-G-TG-ATTT-GGAAT-GCA-TT-GA----TTC---T-TTCATA-TGCT--TT-CA----CTTCG--GTGA--TTACTTTTATTTAAACACAAGTGTCTGT-TGAT-ATATAA-TA-TATT----A----T---ACT---CAC-TAA--TCC--TA-CTTTGGATAAA-TT-GTATTTA-TA-GAA---TGTAT-------AACTATTTAATATACGGT-AGTTTTCAAGCACGTTTCGGCGGTAAGCCCAA--GGGTCTTTT-CGG-TCCTATTCCGCTC-CC-----GCAC----AGG-GAGCGGGGTGCA-C-GA-AA-C-CC--TTGGCTA-G-CGAAGAT-------------TA--ATT-----T-T-TTG---CCTGTTAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATGCCACT-A---GT-AT--TGA--TTATGATACATGTA----TTATGTC-AT-CAAA-ATT--AATTTT-AC--A--CATTACA-T-TATTTTCAT-TATAATATGTAACAC--TATC--------AT-CTGTGCG-GC-CC-GC--GCATG----T--TTAAGCATGTAAT--AAAT-ATC-G-ATTCCATC-TT-TATATTCTTGGAAGAG------AGAGATATAT---------------TT---TGTGTCT--AAA-TTGT-GT-AATATT-TAGG-AT-T--AT-C-AATTAA-A------AT-AT--ATATACATCGA-AT-TT-AAAATAGT-GTGGAA-TTGACGTT------TGTTCTA
gi|11 : -------------AA--AAT--CTGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCATTTTGC-A-AGGTG-AAATG-CACT-A---GT-ATATTGA--TT----TAT--GTTAAA-TTAT-TTGAatgttatttacaacggaatggcatatgcggttctttcattctgtttagacccgccctaccgttttatcattattcatgcggatggagatacaaaccttggaacgaactgggccggatgggtttagaaatcagtcgattttttcagcattttccactgacaataaacaaaagggaatatcaaagtttcagtaaatcattcttgtgcgtttttatggtaaaaaaaaattagactttagtgtagtagctttattaagtttgtagtcataattgtaaaggggccagcagctatggagaactgcattt
gi|13 : tttacattatgttgcttaactatttatatatacatgtagttttcaaagcagaataaatctgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCC--C-A--TA-C-TTT-TA-CGA-A-T---GTAGAAA---C---AT-------G---TTTGCG-A--G-A------AGGTACAT--TTTTAAA--A-T-GATTT----AG-G-CT----GTGTT----TGA-ATAT-CA---G-T-----AA-AA-C---TTTTA-AA---TT-T---CGTTT-TGCGATA-GCCTTA-CA--TTA-AA--TCGCTGATA-TTTA-AAAA--AAA---T----A-GC-AGACATA--T-CAC-----T-A---A-A--C-C----TCTC--CAT--TATA---AAA-----A--CATGTT-TGAA-----AA-AAA---AC-T-A--CT-TTTTAG-AA-TT---T--CTatctttgaaaactccagcataatttgataa
gi|14 : CCCGTC--C-A--CA-C-TTT-TAGCAG-A-A---CTAGAAA---C---AT-----A-----TT--CG-ATAG-A------CCGAGCGG--TT---AA--A-T-AATTCC---AG-GGCT----GTGTT----TGT-ATAT-TA---T-C----AAA-AA-CAAATTT----A---AT-TTG-CGTAC-AGC-ATA-CCT----TG--TTA-CA--TCG-CGATATTTTA-AAAAATAAA---T----A-GGCAAGAATT--T-CAC-----T-A---G-A--A-C----TCTC--CAT--TAT----GAA-----ACGCTG-TT-TGAA-C--CCA-TGA---CC-atttggagatttcatatcagc
gi|15 : -TATATTTTATT-T-TA---TGTAACAC-AT-------------GCTG-GC-------------------------TAA-CATTCAATCAAAAT-TTC-GCATTC---C-ATATATAGTCTTGG--------------GATATAT---------------TT---TGTG-CT--AAA-TTGC-GTGAATATT-TAAT-ATATAAAT-CAAATTAA-AGTACATAC-ATGTACGTATATCAA-A--TT-AAGATAGT-ATGCAA-TTGACGTTT----GTGTT
gi|16 : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AC-----AAG---TT--CG-ATGG-A------CCATACGG--TT---AA--G-G-GA-TTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTA-AA---AT-T---CGTAC-AGCAATA-ACCGTA-TG--TTA-AA--TCGCCGATCTTTTA-AAAAATAAA---TTG----GG-GAAAATT--T-CAT-----C-A---GCG--C-C----TCTC--CAT--TATG---GAA-----AC-CAGAtattgatttgatcta
gi|17 : CCCGCC--C-A--C--C-TTT-TA-CAG-A-T---CAAAAAA---CG--ATG----AAT---TT--CG-ATGA-A------ACGTACGGA-TT---TA--A-G-GATT-C---AGCG-CT----GTGTT----TGA-ATAT-CA---T-TA---AAA-AA-C---TTT--TAA---AT-T----GTAC-AGCGATA-CCCGTA-TG--TTATAATGTCGCT--TATTTTAGAAGAATGAA---TTG--A-GG-ATAAATT--T-CAA-----C-A---ACA--C-C----TCTC--CAT--TA
gi|18 : g---CAC-TAA--ATC--TA-CTTTG-ATAAG-TT-GTAGTTA-GATAAA---TGTAT-------AA--------------aagg
gi|18 : gGTTTT-GT----TT--TTTTA---A-------GTGTCT-T-CGAT-ACATAA-T--T------------------------C-TAA--ATC--TA-CTTTG-ATAAG-TT-GTATTTA-GATAAA---TGTAT-------AA--------------ctatttatatacgtgngtttttttgttttgtttttttaagtgtcttcgatacataattctaaatctactttgataagttgtatttagataaatgtataactatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : gcactaaatctactttgataagttgtagttagataaatgtataactatttatatacgtgngttttttt-GCT-TTAAT---GTC--TTTCAA---AGTCTCCGTGA--TT--TT--G---AAA---AAGTGTCT-TTCGAT-ATATAA-TCTTATT----T----ACCAACA---CAC-TAA--ATG--TATCTTTG-AT-AA-TT-GTATTTACGATAAAT--TGTAT-------ctatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : tT-------------AA--AAT--ATGT-T-TTTGTTC----TAAACAAATG---ATAGTGTTTAC-A-T-A-TTTGC-A-AGGTG-AAATG-CACT-A---GT----------TT----TA---ATTTCTATTAT-TC-AT-CAAACATT--AATTTT-AC--A--CATTGCA-TATACTTTATTCTATAGAATGTAACAC-ATA-CACTGATGTATGCTG-GTGCCC-AT-GCAAGT-TG----TATTTAA-AACGCAATCAAAATAATC-GCATTC---A--T-TATATTCTTG--AGAT------AGGGCTATAA---------------TTATCTGTG-CTCAAAA-TTGTGGTGAATATTGTAGTAATATAAAT-C-AATTAA-A------AT-AT--ATATACATCGA-AATTT-AAAATAGT-GTGGGACTTGAAGTTT----GTtaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatatgtttttgttctaaacaaatgatagtgtttacatatttgcaaggtgaaatgcactagttttaatttctattattcatcaaacattaattttacacattgcatatactttattctatagaatgtaacacatacactgatgtatgctggtgcccatgcaagttgtatttaaaacgcaatcaaaataatcgcattcattatattcttgagatagggctataattatctgtgctcaaaattgtggtgaatattgtagtaatataaatcaattaaaatatatatacatcgaaatttaaaatagtgtgggacttgaagtttgttcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|21 : tgctttaatgtctttcaaagtctccgtgattttgaaaaagtgtctttcgatatataatcttatttaccaacacactaaatgtatctttgataattgtatttacgataaattgtattaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTAGAG--TT---AA--A-T-CATTT----AG-G-CT----GTGTT----TG-----T-CG---T-T------------------T-TAA---TT-T---CGTTT-AGCGATA-TC-------------AA------CGATATTCAA-AAAAGAAAG---CTG--A-AG--------------------T-G---GAA--C-C----TCTT--CAT--TATA---GAA-----AC-CTG-TT-TGAA-C-TTAA-CGA---CT-T-A--CC-TG---G-AA-TA---G--CTGGCTCTATG--CA-A---AG---G-tcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|23 : tagGCC--C-AAACAAC-TTT-TA-CAACC-C---CAAGAAAATTC---ATCCAAAAAA---AT--CGCATGATA------CCATACGGTTTT---AC--ATGCGAATTCAAAAG-G-CT----GTGTTTC--TGA-ATAT-CAACCTAT----AAACAATC---TTTTA-AA---AT-TCTCCGTACAAGCGATA-ACttaatatcag
gi|24 : agccaccagCCCGCC--CCA--CA-CGTTTGTA-CGA-C-CGATCAAAAAA---CC--AT-----A-T---TT--CG-ATGA-A------ACGTACGG--TT---TA--A-GCGA-TTC---AG-G-CT----GTATTCTTGTAA-GTAT------T-C----A------------TGATAA---AC-T---CGTAC-AGCGATATCCCGT--TGACTTA-AA--TCGCCGCTATTT
gi|28 : -ATATACATCGA-A--TT-GAAATAGT-GTGGAA-ATGACATTTACGAGTGTT
gi|29 : AA--GGGT--TTT-CAG-TTC-ACCCCACTC-CTC----GTAT----GGA-AAGCATGGTGAA-CTGG-AA-ACCC--TTAGCTA-A-TGAAGAtattaatttgatataagtaaacagggatcgcatgcttcgtaaactt
gi|3 : gtcAAAATAAA---TTG--ATGG-AAA--TT--T-CAC-----CGA---GCA--CGC----TCTC--CAT--TATAT--GAA-----AC--AGATTGTGAA-CCTCCACTGA---CC-T-GACCT-T----G-AAGTC---T--CTCGCTCTATAATCATA---AA---T-AC-GATA--CAA--------C-ACGCTG-ATTTTG-AAT-GCT-TTCG-----TCCCGCT-TTCATT-AGTCCTTT-CAA---CGTCTC-GTGATTTT--TTTTA---AAA---AAGTGTCT-T-CG-T-ACATAA-T--TTTG----TACCGA---ACA---CAC-TAAACATCGTTACCTTTG-ATGAATTT-GTA-TTA-GATAAA---TGTA
gi|3 : -----TTCGACT---AGCCAAA--GGGT--GTCGCGGATGC-AC-CCGCTC-CCTATTAGCGC----GGGCGAGCGGAGTGGA-CCGAAAA-A-CA--CTGGCTACG-CG-AGACTTCTGGCTTTTGAAA--AATACACGC-TATAT---T----TAAATAAGTGTATATAA---TTAC-ATTTA-TCT---A-A--TACAAATT-CATC-AAAGGTAA---CGATGTT----TA---GT-----GTGT-TCGGTACAAA-ATT--Aattatatacacttatttaaatatagcgtgtatttttcaaaagccagaagtctcgcgtagccagtgtttttcggtccactccgctcgcccgcgctaatagggagcgggtgcatccgcgacaccctttggctagtcgaagataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|3 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtaca-TAA--ATG--TA-ATTAT-ATACA-CT--TATTTA-AATATAGCGTGTATTTTTCAAAA--------------GCCAG-----AAG-----TCTCGCGT--AGCCA----GTGT--TTTTCGG-TCC-ACTCCGCTCGCCC----GCGCTAATAGG-GAGCGGG-TGCATCCGC-GACA-CCCTTTGGCTA-GTCGAAGAT-------------AAGAAAT--ACATGT-TTT---C----TAA-CAAATG---ATAGT-TTTACAA-TCATTTTCC-ACAGGTGAAAATG-CACTAA---GT-A---TGA--TT----TA-----------TAC-TCGAT-ACAC-ATTAAAATTTT-ACCAA--CATTACAGTATA--ATATT-TATAAAATGTAACACAATA-CCA------GTGCTG-GCGTACGATGGCAGGCATGGTCATG-TTTA-GAT----TCAAAAT-ATCTGCATTT---CATT-TATATTCTT-GAAGATTAGGGGGGGGAAAAATTTGAGGTTTTTTGTATT---TGTG-CT--AAATTTGT-GTGAATATT-C-GT-ATATAAATGA-AATTAA-A------ATGATG-ATATACATCGACA--TTAAAAATAGTGGTGGAA-TTGACGTTgataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|30 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtacataattttgtaccgaacacactaaacatcgttacctttgatgaatttgtattagaA-TCA--T--CTAGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCA-T-AGTC--TT-catacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|33 : ttGCC--C-A--CA-C-TTT-TG-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--AG-ATGG-A------ACGTACGG--TT---AA--G-G-GATT
gi|4 : CCCCGCC--C----CA---TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAA---TT--CG-ATCG-A------CCATACGG--TT---AC--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-CCCGTA-TG--TTA-AA--GTGCCAATATTTTA-AAAAATGAA---TTGGGA-GG-AAAAATT--T-CAC-----T-A---GCA--C-C----ACTT--TAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AT-G-TA--CA---------C-ACG-TG-ATTT-G-AATTGCA-TT-G-----TCC-GCT-TTCATTTAGTC--TT-CAA---CGTCTC-GTGA--AT--TTTAA---AAA---AAGTGTCT-T-CGATTATATAA-T--TATT----T----A---ACA---CACCTAA--AGC--TA-CTTAG-ATAAA-TTTGAATTTA-GATATT---TGTAC-------AA--------------GC-AC-----AA------TTCG-C----AGCCAAACAGGGT--TTT-CGG-TCC-ATTCCGCTC-CCC----GCAC----AGG-GAGCGGGGTGCA-CCGA-AA-A-CC--TTG-CTA-G-TGAAGAT-------------AA--AAT--CTGT-T-TTT---C----TAAACAAATG---ATAGT-TT-AC-A-TCA-TTTGCCA-AGGTG-AAATG-CACT-A---GT-A----GA--TT----TA---GT-----TTAT-TC-AT-CAAA-ATT--AATTTTCAC--AATCATTACA-TATATTTTAAT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCAC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGAAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAACA------AT-ATA-ATATACATCGA-A--TT--AAATAGT-GTGGAA-TTGACATTT----G-GTTCTAc
gi|5 : CCCCGCC--C-A--TA-C-TTT-TA-CAA-C-C---CAAGAAA---C---ATG----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AT--A-T-CATT-C---AA-G-CTCAGTGTGTT----TGA-ATAT-CA---T-TTAATAAA-AA-C---TTTTA-AA---AT-T---TGTAC-AGCGGTA-ACCGTA-TG--T------------GATAATTTA-AAGAATAAA---TTG----GA-AGAAATT--T-CACTTGACC-A---CCAGTC-C----TCTC--CAT--TATG---AAA-----AT-TAGATT-TGAA-C-TCCA-TGA---CC-TTC--CT-T----G-AA-TA---T--CTCGCTTTATG--CA-A---AA---G-AC-GATAGGTA---------CCACA-TG-ATTT-G-AAT-ACA-TT-G-----TCC-GCT-TTTAT--ATTC--TTTCAT---TGTTTC-GTGT--TT--TTTTTT--AAA---AAGTGTCT-T-CGAT-ACATAA-TA-TATTATACC----A---ACA---CAC-TAA--ATT--TA-CTTTC-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------Aca
gi|6 : gCCCCGCC--C-A--TA-C-TTT-TA-CCA-C-C---CAAGAAA---CTTAATT----AAG---TT--CG-ATTG-A------ACGTACGG--TT---AA--G-G-GATT-C---AG-A-CT----GTGTT----TGA-ATAT-CA---T-C----AAA-A--C---TTTTA-AA---AT-T---CGTAC-AGCGATA-ACCGTA-TG--TTA-AA--CCGCCGATAGTTTA-AAAAATGAA---TTG--G-GG-AAAATTT--T-CAC-----C-A---GCA--C-C----TCTG--CAT--TATG---GAA-----GC-AAGATT-TGAA-C-TTCA-TGA---CCTT-C--CT-T----G-AA-TA---T--CTCGCTCTATA--C--A---AA---G-AT-GATA--C----------C-ACG-TG-ATCT-G-AAT-ACA-TT---------C-GAA-CACACG-AAGC--CT-C-G---CGTTTT--T----TT--TTTTA---ATT---TAGTGTCT-T-CGAT-ACATAATT--TATT----T----A---CCAACTCAT-TAA--ATC--TA-CTTTA-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------taactattt
gi|7 : aCCCGGCCACC-A--CA-C-TTT-TA-CAA-AAC---CAAAGAA---C---AT-----AAAAATTT--CG-ATGG-ACCAATAACGAACGC--TT---AAGCA-G-GCATTC---AG-G-CT----GTGTG-----GACATATTCA---T-TGGA-AAA-AG-C---TTTTATAAGAAATAT---CGTAC-AGCGATA-CCCGTAGTG--TTA-AA--TCGTCGATATTTTATAAAAATAAA---TTG----GG-AAAAATTACT-CAT-----CAA---GCA--C-CGACTTACC--CAG--TACGATTGAATTCACAC-CAGAGT-TGAA-CGTCCA-TTAACCCC-T-ATCCT-T----GAAA-TC---TTCTTCGCTCTA-A--TA-ATTTAATATG-ACGGATA--CAAGGGTCAGTC-GCA-TGAATTT-G-AAT-GCATTT-GCTCACCCC-GCTATTCA-T-AGTCT-TT-CAACCGCGTCT--GTTA--TT--Tctatttaaatat
gi|8 : gc-ATGTATATCGA-A--TT-AAAATAGT-GTAGAA-TTGACGTTT----GTGTTaa
blockSeqs : AC C AA A G G G CCGAT ATT TTA CCAAAAAA . C T CCAATA TT . GC TGC T TCAAA C G CAGT CTTG C T ACC A TAAT C AT AAA GAT GAA A CTC A TC AG AC T TGT C G . GGA C AC . TTGACC . C GT G GACT . . ATT TTCAC G G G . C A C ACC T GAC . TTTA A G CTTC AT T TTT TAT . G GG AGGGTCAGT C C A T . T T GCTCAC C A TTT CT T ACCG CC GATT . TAAA . T T T CTTATTTACCA ACT C AC GT T . T T C GCG TTTTCAA GCCAGAAGTCTCGCGT CA . G A . C G TATTA TAAT C T T A AC CT CG TTCTGGCTTTTGA GA ACAC G A GTTC TAT G A T C T G C C C . A AAG ATATTGATTTATGTTAAA . G A C AA C CAA G T T C GA AA ACACTGATGT . TACGATGGCAGGCATGGTCATG . T A T CAT A GA TTAGGGG TTGAGGTTTTTTGTA ATC . CA T G G A CA C GTACAT G GT C AT AA G C ACGA
blockSeqs : . . . . . . . CCC . G AAAAAT . . . . A . . GC T CC . . . TC . . . . GGA . A . TAT . . TG . C A . . T C T . AT . . . CG . C . . . . . T . . A . . G C . . . ATC . G . . CAT . . . . . . . A . . . . . . . CG . . TT T T A T GA . AAA . . . . ATATTATACCA . . . . C . . . . T . GCACAATTCGC . . T . . T . C . . . C . CA . GT . . CT . . C . . . . T T G . . A . . . AACGATGTTTAGT . G . . . . AAT . C T . AA A ACCA . CCCATGCAAGTTGTAT . G . . CA . AA T . . . . . . . . GA . . . G . . A . . .
blockSeqs : . . . . . . . AAC . C GAAT . . . . . . . T T TC . . . . . . . . A . A . TAT . . . . A A . . T C . . A . . . CA . A . . . . . . . . A . . . A . . . TC . . . . TT . . . . . . . . . . . . . . . G . . CG . . A C GA . AAA . . . . TTTGTACCGA . . . . . . . . . . . . . . . . T . C . . . C . A . A . . AT . . T . . . . C . C . . . . . . TTTAATTTCTA . G . . . . A . T T . AA A AC . CACATGCAGGCATGTA . G . . CT . G T . . . . . . . . C . . . A . . A . . .
blockSeqs : . . . . . . . AA . . GAAG . . . . . . . G A TC . . . . . . . . . . A . TA . . . . C A . . T C . . A . . . T . C . . . . . . . . A . . . C . . . A . . . . AG . . . . . . . . . . . . . . . G . . T . . A C GT . AAA . . . . TATTTA . . . . . . . . . . . . . . . . . . C . . . C . A . G . . AC . . C . . . . C . G . . . . . . AGATTTAGT . . . . . . . A . . A . . . . . . . A . . . . . . . . . . . C . . . . . . G . . .
blockSeqs : . . . . . . . CC . . TAAG . . . . . . . G T TC . . . . . . . . . . A . TT . . . . T A . . G C . . A . . . T . C . . . . . . . . A . . . C . . . A . . . . CT . . . . . . . . . . . . . . . G . . T . . T C TA . ATT . . . . TATTTA . . . . . . . . . . . . . CT . . C . . . . . . . . . . . . . ATGATTTA . . . . A . . .
blockSeqs : . . . . . . . AT . . AAG . . . . . . . T T TC . . . . . . . . . . A . TA . . . . A A . . C T . . A . . . C . C . . . . . . . . A . . . C . . . A . . . . CT . . . . . . . . . . . . . . . . . . T . . G T . . A . . . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . CC . . AAG . . . . . . . G T C . . . . . . . . . . G . TA . . . . C . . . T . . . G . . . C . C . . . . . . . . A . . . C . . . C . . . . AT . . . . . . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . CC . . AAA . . . . . . . G T T . . . . . . . . . . . . TA . . . . A . . . . . . . . . . . T . C . . . . . . . . . . . . C . . . . AT . . . . . . . . .
blockSeqs : . . . . . . . CC . . AT . . . . . . . T A C . . . . . . . . . . . . T . . . . A . . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . . . CC . . A . . . . . . . G . C . . . . . . . . . . . . . . . . . C . . . . . C . . . . . . .
blockSeqs : . . . G .
blockSeqCons : AAG******** ** *** TC*** *** *** ** ** ** NT***** ** G****** T** A*** C* ** AAA****** TATTTACCA********** ** C**** G** NT** C******* ATGATTTAGTT***************** A* AC********* CCATGCAGGCTGTG********* CA**** G* **
originalCons : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TC---T--CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TT-G-----TCC-GCT-TTCATT-AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTTA---AAA---AAGTGTCT-T-CGAT-ACATAA-T--TATT----T----A---ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTT-CGG-TCC-ACTCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGCA-CCGA-AA-A-CC--TTGGCTA-G-CGAAGAT-------------AA--AAT--ACGT-T-TTT---C----TAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATG-CACT-A---GT-A---TGA--TT----TA---GT-----TTAT-TCGAT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCGCGC-AT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTC---C-TT-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
finalCons : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---ATAAG--------TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TTG--A-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-AA-TNT-----CTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AAT-GCA-TTG------TCC-GCT-TTCAT--AGTC--TT-CAA---CGTCTC-GTGA--TT--TTTTAAAA------AAGTGTCT-T-CGAT-ACATAA-TTATTTACCA----------ACA---CAC-TAA--ATC--TA-CTTTG-ATAAA-TT-GTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAAA--GGGT--TTT-CGG-TCC-ACTCCGCTC-CCC----GCGC----GGG-GAGCGGGGTGCA-CCGA-AA-A-CC--TTGGCTAG--CGAAGAT-------------AA--AATNT--GT-T-TTTC-------TAAACAAATG---ATAGT-TTTAC-A-TCA-TTTGC-A-AGGTG-AAATG-CACT-A---GTATGATTTAGTT-----------------TTAT-TCGAT-CAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACACA-TAC---------ATGCTG-GCGCCATGCAGGCTGTG---------TTAA-CATGCAATCAAAAT-ATC-GCATTCCA----T-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAACAAGGATCCAGTCGCGTCTTATCATTCTGTTTAGACCCGCCCACTCCTTTTATCAATTATTCATCGAAGGAATGGAAAGATTACAAACTTGACAGAAAACTCCCGTATGAGGTTTAGAAATCAGTCGTTTTTCAGCTTATTCCTAACATGACAATAAACAAAGGCACTATCAAAAGTTTTCAGAACTCATTCTTTGTGGCGTTTTATGTAAAAAAAATCTAAAACCCTTTAGTTAATTAGTTTTGAGTTGTAGTCAATGTAAAAGGTGACAGCGCGATATGGATACTGCACTTCATC
Unaligned ( gi|10 ): GTAAACGGGGATCGCACGCGGTCTATTCATATTCCTAAACTTTCTGTTTAGACCCGCCCACTCCGTTTATCATAGTGAAAGATCACAAACCTCGACGAAAACTGCCCGGTAGGAGGTTTAGAAATCAGTCGATTTTTTCAGAAACAAAGGGAACTATCAAAAGTTTTCAGAAATCATTCTTTGTGACGTTTATGTATTAAATTCTAACTTTAGTGTTGTAATTTTGAGTTTGTAGTCAATGTACATTGTAAAAAGGGGTCAGCACATATGGAGACTTCACTTGATCC
Unaligned ( gi|12 ): TCATTTTTGTTTAGACCCAACCACTTTGTCATTATTTATGAAGGATTACCATGATGAAAACTGCTTGTTAAACCTGGGTTTAAAATTCAGTTGATTTTTCAGCATTCCTCGTGACAAAAAACAAAGGGGACTATTAAAACTATTCAGAAACCATTGTTTGTGGTGTCTTAAGTTTAGAATTTTAACTTGTGTTGTACAATATAATTGCTTTTATTGACCATGGAAAAAGGGCATATGCCAATAGCTGTCTCACGTCTTCCTT
Unaligned ( gi|19 ): TTGGTTGCAGATTCAGCAAATTGTTGGCATTTCTTGAGGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTTACATTGTAATTGCTTTTACTGGCAACGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|20 ): TGGTTGCAGATTCAGCAAATTGTTCGGCATTTCTTGAGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTACATTGTAATTGCTTTTACTGGCAACGGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|22 ): TTACATATTCATTTAAATTTTTGGGCATTTCTCGAGACGAAAAACAAATGAGACATTGTCTGTGGTGTCTAAGTATGTAATTTTAACTTTTGTTTAACATAATTGCTTGTATTGGCAACGGGAAAAAGGGGGCAGCTACAATAGTTGTTTAACTCATAC
Unaligned ( gi|25 ): AAAACATTCCATAACCTCCTCGTGGTGATTTAAGGTATTATAGTTTTAACTTTTGTACGAAATAATTGCTTTTTACATCGGCCACGGAACAGGGTTCATCTTCTAATAACTGTTTTAACTCATCCTT
Unaligned ( gi|26 ): AAATTCAGTTTAGTTTTCGGATCCTGTGACGAAAACAAGGAGACTATTAACTTCTATTTAAAAGAAGCATTGCCTATAGGATATATGTAACTTTTGAATTAAAATTGTTTTTACTGGCCA
Unaligned ( gi|27 ): GTCTGTGGTATCTATGTATAAAATTTTAACTTTTGTACAGTAGAAGTATCTTTATTCACCAAAGAATTGGGGTCAAATCCAATAGCTATTTTACATTTTCC
Unaligned ( gi|31 ): TAATCTGAAACCATTGTCTGTGGTGTCTAGGTATATAATTTTAACTTTCGTACACTNATGTCTGCT
Unaligned ( gi|32 ): GTAGTAGTTTTGAGTTTGTAGTCAAATTAAAAAGGGGCCAAAACAAACGGAGACTGCACTTCATC
Unaligned ( gi|34 ): TAGTCAATGTAAAAAGGGGCCAGCACATATATGGAGACTGCACTTCATCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 111 22222222222 111111 11111 1111 1111 111111 111 111 11 1111111 111 11111 1111 1111 111 11 222222222 2222222 11 1 111 1111111 111111111 11 1 111 1111111 000000000000000000000000000000000000000000 111 11 1 1 1 22222 1 1 1 11 1 11 22222222 1 6666666666666666666666666 2 1 11 1 11111 777777777777777777777777777777777777777777777 222 2222222 555555555555555 111 11 111 222222 11 11 1111
lowQualScore : 55 3 55 3 3 3 3 7777777 666 333 55555555555 55 3 3 000000 77 555 44 888 55555 3 3 7777 2222 3 3 666 3 7777 3 000000 777 666 3 111 3 44 44 55 4 777 1 0 8 666 55 00 3 55 3 2222222 666 1 88 3 7777 55 55 111 00000 4 2 4 4 8 1 4 777 4 7777 5 5555 5 66 333 1 11 5 888 888 5 5 77 888888888 5 5 5 5 5 5 5 2222222 5 5 66 5 2 11 0 000 99 8888888 66 666666666 5 5 5 5 99 1 1 1 77 1 5 66 66 8 4 8 4 222 6666666 333333333333333333333333333333333333333333 777 33 0 0 0 2 2 33333 6 0 6 0 0 33 6 0 11 0 3 8 11111111 0 88 8 6 8 8 8 8 8 3333333333333333333333333 8 0 0 33 0 88888 8 0 3 1 8 0 44 88 555555555555555555555555555555555555555555555 8 5 8 8 3 222 8 88 3333333 000000000000000 444 8 11 8 8 8 0 8 0 0 111 8 333333 8 88 5 33 55 5 5 4444
lowQualScore : .. . .. . . . . ....... ... ... ........... .. . . ...... .. ... .. ... ..... . . .... .... . . ... . .... . ...... ... ... . ... . .. .. .. . ... . . . ... .. .. . .. . ....... ... . .. . .... .. .. ... ..... . . . . . . . ... . .... . .... . .. ... . .. . ... ... . . .. ......... . . . . . . . ....... . . .. . . .. . ... .. ....... .. ......... . . . . .. . . . .. . . .. .. . . . . ... ....... .......................................... ... .. . . . . . ..... . . . . . .. . . .. . . . ........ . .. . . . . . . . ......................... . . . .. . ..... . . . . . . .. .. ............................................. . . . . . ... . .. ....... ............... ... . .. . . . . . . . ... . ...... . .. . .. .. . . ....
lowQualScore : 00 6 00 6 6 6 6 9999999 444 666 11111111111 00 6 6 555555 99 888 66 333 66666 6 6 7777 7777 6 6 444 6 7777 6 222222 444 444 6 444 6 66 77 55 0 777 6 9 9 444 00 77 6 00 6 2222222 444 4 66 6 7777 00 00 000 00000 0 3 4 4 9 1 4 888 4 6666 0 6666 0 99 888 0 99 0 888 888 0 7 99 666666666 7 7 7 7 7 7 7 9999999 0 0 99 0 5 99 0 000 55 0000000 99 666666666 7 7 7 7 33 7 4 4 11 6 0 11 11 9 4 9 4 222 2222222 222222222222222222222222222222222222222222 000 88 0 0 0 5 0 22222 5 0 5 0 0 88 5 0 00 8 8 0 00000000 8 88 0 0 0 0 0 0 0 0000000000000000000000000 0 0 0 88 0 55555 0 8 8 4 0 8 88 88 444444444444444444444444444444444444444444444 0 0 0 0 2 000 0 88 6666666 000000000000000 000 0 00 0 0 0 8 0 8 8 000 0 000000 0 99 7 66 99 7 7 2222
consensus : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TT--GA-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-A--A---TNTCTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AA-TGCA-TT-G-----TCC-GCT-TTCA--T-AGTC--TT-CAA---CGTCTC-GTG----A--TT--TTTTA---AAA---AAGTGTCT-T-CGA-TACATAA-T--TATT-TACC-AACACA-CTAA--ATC--TA-CTTTG-ATAAA-TTGTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTC-GCG---AGCCAA--AGGGT--TTT-CGGTCC-ACTCCGCTC-CCCGCAC----GGGGAGCGGGGTGCA-CCG-GAAA-CC--TTGGCTAG-CGAAGATA--AAATNTGT-TTTT---C----TAAACAAATGATAGT-TTTAC-ATCATTTTG-CA-AGGTG-AAATG-CACT-AGTAT--TGATT----TA---GTT----TTAT-TCGATCAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCG--C-CAT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTCCAT--T-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
Reference ( family-824 ) : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AA--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-NCCGTA-TG--TTA-AA--TCGCCGATATTTTA-AAAAATAAA---TT--GA-GG-AAAAATT--T-CAC-----C-A---GCA--C-C----TCTC--CAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-A--A---TNTCTCGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AA-TGCA-TT-G-----TCC-GCT-TTCA--T-AGTC--TT-CAA---CGTCTC-GTG----A--TT--TTTTA---AAA---AAGTGTCT-T-CGA-TACATAA-T--TATT-TACC-AACACA-CTAA--ATC--TA-CTTTG-ATAAA-TTGTATTTA-GATAAA---TGTAT-------AA--------------GC-AG-----AAG-----TTCGGCG---AGCCAA--AGGGT--TTT-CGGTCC-ACTCCGCTC-CCCGCGC----GGGGAGCGGGGTGCA-CCG-AAAA-CC--TTGGCTAG-CGAAGATA--AAATNTGT-TTTT---C----TAAACAAATGATAGT-TTTAC-ATCA-TTTG-CA-AGGTG-AAATG-CACT-AGTA---TGATT----TA---GTT----TTAT-TCGATCAAA-ATT--AATTTT-AC--A--CATTACA-TATATTTTATT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCG--C-CAT-GCAGGC-TG----TG-TTAA-CATGCAATCAAAAT-ATC-GCATTCCA---T-TATATTCTTGGAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAA-A------AT-ATG-ATATACATCGA-A--TT-AAAATAGT-GTGGAA-TTGACGTTT----GTGTTCTA
gi|1 : AATAAACATTT--GG-GA-AACAATT--TGCAC-----C-ATAAGCAT-C-C----TGACAACATCTTATG---GAA-----AC-CAGATT-TGAAAC-TC---TGA---C--T-A--CCCT----GTACCA---TGCGTCGTCCTATAA-CA-A---AA---GGAC-GATA--CA---------C-A-G-TG-ATTT-GGAA-TGCA-TT-GA----TTC---T-TTCA--T-ATGC--TT-TCA---CTTCG--GTG----A--TTACTTTTATTTAAACACAAGTGTCTGT-TGA-TATATAA-TA-TATTATACT-----CA-CTAA--TCC--TA-CTTTGGATAAA-TTGTATTTA-TA-GAA---TGTAT-------AACTATTTAATATACGGT-AGTTTTCAAGCACGTTTCGGCGGTAAGCCCA--AGGGTCTTTT-CGGTCCTATTCCGCTC-CC-GCAC----AGGGAGCGGGGTGCA-C-G-AAAC-CC--TTGGCTAG-CGAAGATT--AA---TTT-TTTG---CCTGTTAAACAAATGATAGT-TTTAC-ATCA-TTTG-CA-AGGTG-AAATGCCACT-AGTAT--TGATTATGATACATGTA----TTATGTC-ATCAAA-ATT--AATTTT-AC--A--CATTACA-T-TATTTTCAT-TATAATATGTAACAC--TATC--------AT-CTGTGCGGCC-CGC-GCA----TG----T--TTAAGCATGTAAT--AAAT-ATC-G-ATTCCATCTT-TATATTCTTGGAAGAG------AGAGATATAT---------------TT---TGTGTCT--AAA-TTGT-GT-AATATT-TAGG-AT-T--AT-C-AATTAA-A------AT-AT--ATATACATCGA-AT-TT-AAAATAGT-GTGGAA-TTGACGTT------TGTTCTA
gi|11 : A--AAATCTGT-TTTT---C----TAAACAAATGATAGT-TTTAC-ATCATTTTG-CA-AGGTG-AAATG-CACT-AGTATATTGATT----TAT--GTTAAA-TTAT-TTGAatgttatttacaacggaatggcatatgcggttctttcattctgtttagacccgccctaccgttttatcattattcatgcggatggagatacaaaccttggaacgaactgggccggatgggtttagaaatcagtcgattttttcagcattttccactgacaataaacaaaagggaatatcaaagtttcagtaaatcattcttgtgcgtttttatggtaaaaaaaaattagactttagtgtagtagctttattaagtttgtagtcataattgtaaaggggccagcagctatggagaactgcattt
gi|13 : tttacattatgttgcttaactatttatatatacatgtagttttcaaagcagaataaatctgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCC--C-A--TA-C-TTT-TA-CGA-A-T---GTAGAAA---C---AT-------G---TTTGCG-A--G-A------AGGTACAT--TTTTAAA--A-T-GATTT----AG-G-CT----GTGTT----TGA-ATAT-CA---G-T----AAA-A--C---TTTTA-AA---TT-T---CGTTT-TGCGATA-GCCTTA-CA--TTA-AA--TCGCTGATA-TTTA-AAAA--AAA---T----A-GC-AGACATA--T-CAC-----T-A---A-A--C-C----TCTC--CAT--TATA---AAA-----A--CATGTT-TGAA-----AA-AAA---AC-T-A--CT-TTTTAG-A--A---TTTCTatctttgaaaactccagcataatttgataa
gi|14 : CCCGTC--C-A--CA-C-TTT-TAGCAG-A-A---CTAGAAA---C---AT-----A-----TT--CG-ATAG-A------CCGAGCGG--TT---AA--A-T-AATTCC---AG-GGCT----GTGTT----TGT-ATAT-TA---T-C----AAA-AA-CAAATTT----A---AT-TTG-CGTAC-AGC-ATA-CCT----TG--TTA-CA--TCG-CGATATTTTA-AAAAATAAA---T----A-GGCAAGAATT--T-CAC-----T-A---G-A--A-C----TCTC--CAT--TAT----GAA-----ACGCTG-TT-TGAA-C--CCA-TGA---CC-atttggagatttcatatcagc
gi|15 : -TATATTTTATT-T-TA---TGTAACAC-AT-------------GCTG-GC--------------------------TAA-CATTCAATCAAAAT-TTC-GCATTCCA---TATATAGTCTTGG--------------GATATAT---------------TT---TGTG-CT--AAA-TTGC-GTGAATATT-TAAT-ATATAAAT-CAAATTAA-AGTACATAC-ATGTACGTATATCAA-A--TT-AAGATAGT-ATGCAA-TTGACGTTT----GTGTT
gi|16 : CCCCGCC--C-A--CA-C-TTT-TA-CAA-C-C---CAAGAAA---C---AC-----AAG---TT--CG-ATGG-A------CCATACGG--TT---AA--G-G-GATT-C---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTA-AA---AT-T---CGTAC-AGCAATA-ACCGTA-TG--TTA-AA--TCGCCGATCTTTTA-AAAAATAAA---TT--G--GG-GAAAATT--T-CAT-----C-A---GCG--C-C----TCTC--CAT--TATG---GAA-----AC-CAGAtattgatttgatcta
gi|17 : CCCGCC--C-A--C--C-TTT-TA-CAG-A-T---CAAAAAA---CG--ATG----AAT---TT--CG-ATGA-A------ACGTACGGA-TT---TA--A-G-GATT-C---AGCG-CT----GTGTT----TGA-ATAT-CA---T-TA---AAA-AA-C---TTT--TAA---AT-T----GTAC-AGCGATA-CCCGTA-TG--TTATAATGTCGCT--TATTTTAGAAGAATGAA---TT--GA-GG-ATAAATT--T-CAA-----C-A---ACA--C-C----TCTC--CAT--TA
gi|18 : gCA-CTAA--ATC--TA-CTTTG-ATAAG-TTGTAGTTA-GATAAA---TGTAT-------AA--------------aagg
gi|18 : gGTTTT-GT--------TT--TTTTA---A-------GTGTCT-T-CGA-TACATAA-T--T----------------CTAA--ATC--TA-CTTTG-ATAAG-TTGTATTTA-GATAAA---TGTAT-------AA--------------ctatttatatacgtgngtttttttgttttgtttttttaagtgtcttcgatacataattctaaatctactttgataagttgtatttagataaatgtataactatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : gcactaaatctactttgataagttgtagttagataaatgtataactatttatatacgtgngttttttt-GCT-TTAA--T--GTC--TTTCAA---AGTCTCCGTG----A--TT--TT--G---AAA---AAGTGTCT-TTCGA-TATATAA-TCTTATT-TACC-AACACA-CTAA--ATG--TATCTTTG-AT-AA-TTGTATTTACGATAAAT--TGTAT-------ctatttatatacgtgtagttttcaaagcagaataaatctgatc
gi|2 : tTA--AAATATGT-TTTTGTTC----TAAACAAATGATAGTGTTTAC-AT-A-TTTG-CA-AGGTG-AAATG-CACT-AGT-------TT----TA---ATTTCTATTAT-TC-ATCAAACATT--AATTTT-AC--A--CATTGCA-TATACTTTATTCTATAGAATGTAACAC-ATA-CACTGATGTATGCTG-GTGC-C-CAT-GCAAGT-TG----TATTTAA-AACGCAATCAAAATAATC-GCATT-CA---T-TATATTCTTG--AGAT------AGGGCTATAA---------------TTATCTGTG-CTCAAAA-TTGTGGTGAATATTGTAGTAATATAAAT-C-AATTAA-A------AT-AT--ATATACATCGA-AATTT-AAAATAGT-GTGGGACTTGAAGTTT----GTtaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatatgtttttgttctaaacaaatgatagtgtttacatatttgcaaggtgaaatgcactagttttaatttctattattcatcaaacattaattttacacattgcatatactttattctatagaatgtaacacatacactgatgtatgctggtgcccatgcaagttgtatttaaaacgcaatcaaaataatcgcattcattatattcttgagatagggctataattatctgtgctcaaaattgtggtgaatattgtagtaatataaatcaattaaaatatatatacatcgaaatttaaaatagtgtgggacttgaagtttgttcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|21 : tgctttaatgtctttcaaagtctccgtgattttgaaaaagtgtctttcgatatataatcttatttaccaacacactaaatgtatctttgataattgtatttacgataaattgtattaaatatctaaatatacgtgtagtttttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGTAGAG--TT---AA--A-T-CATTT----AG-G-CT----GTGTT----TG-----T-CG---T-T------------------T-TAA---TT-T---CGTTT-AGCGATA-TC-------------AA------CGATATTCAA-AAAAGAAAG---CT--GA-AG--------------------T-G---GAA--C-C----TCTT--CAT--TATA---GAA-----AC-CTG-TT-TGAA-C-TTAA-CGA---CT-T-A--CC-TG---G-A--A---TAGCTGGCTCTATG--CA-A---AG---G-tcttatgtttacttcaaacgggaatcgcatgcaagttctattcattctgtttagaccccgccactccttaccattattcatgaaggaatgaaaatctaacaaaaaccttgacgaaaacctggccgtatgacgttcagaaatccagtcgattttttcagcattccacatcgacaaataaacatagggaactatcaaaagttttcagaaatcattcttgtggcatttatgtaaaaaatatctaacttttagtgtagtagttgagtttgtagtaatggtaaaaagggccagc
gi|23 : tagGCC--C-AAACAAC-TTT-TA-CAACC-C---CAAGAAAATTC---ATCCAAAAAA---AT--CGCATGATA------CCATACGGTTTT---AC--ATGCGAATTCAAAAG-G-CT----GTGTTTC--TGA-ATAT-CAACCTAT----AAACAATC---TTTTA-AA---AT-TCTCCGTACAAGCGATA-ACttaatatcag
gi|24 : agccaccagCCCGCC--CCA--CA-CGTTTGTA-CGA-C-CGATCAAAAAA---CC--AT-----A-T---TT--CG-ATGA-A------ACGTACGG--TT---TA--A-GCGA-TTC---AG-G-CT----GTATTCTTGTAA-GTAT------T-C----A------------TGATAA---AC-T---CGTAC-AGCGATATCCCGT--TGACTTA-AA--TCGCCGCTATTT
gi|28 : -ATATACATCGA-A--TT-GAAATAGT-GTGGAA-ATGACATTTACGAGTGTT
gi|29 : A--AGGGT--TTT-CAGTTC-ACCCCACTC-CTCGTAT----GGAAAGCATGGTGAA-CTG-GAAACCC--TTAGCTAA-TGAAGAtattaatttgatataagtaaacagggatcgcatgcttcgtaaactt
gi|3 : gtcAAAATAAA---TT--GATGG-AAA--TT--T-CAC-----CGA---GCA--CGC----TCTC--CAT--TATAT--GAA-----AC--AGATTGTGAA-CCTCCACTGA---CC-T-GACCT-T----G-A--AG--TCTCTCGCTCTATAATCATA---AA---T-AC-GATA--CAA--------C-ACGCTG-ATTTTG-AA-TGCT-TTCG-----TCCCGCT-TTCA--TTAGTCCTTT-CAA---CGTCTC-GTG----ATTTT--TTTTA---AAA---AAGTGTCT-T-CG--TACATAA-T--TTTG-TACCGAACACA-CTAAACATCGTTACCTTTG-ATGAATTTGTA-TTA-GATAAA---TGTA
gi|3 : TAA--ATG--TA-ATTAT-ATACA-CT-TATTTA-AATATAGCGTGTATTTTTCAAAA--------------GCCAG-----AAG-----TCTCGCGT--AGCCA----GTGT--TTTTCGGTCC-ACTCCGCTCGCCCGCGCTAATAGGGAGC-GGGTGCATCCGCGACA-CCCTTTGGCTAGTCGAAGATAAGAAATACATGTTTT---C----T-AACAAATGATAGT-TTTACAATCATTTTC-CACAGGTGAAAATG-CACTAAGTA---TGATT----TA-----------TAC-TCGATACAC-ATTAAAATTTT-ACCAA--CATTACAGTATA--ATATT-TATAAAATGTAACACAATA-CCA------GTGCTG-GCGTAC-GATGGCAGGCATGGTCATG-TTTA-GAT----TCAAAAT-ATCTGCATTTCAT--T-TATATTCTT-GAAGATTAGGGGGGGGAAAAATTTGAGGTTTTTTGTATT---TGTG-CT--AAATTTGT-GTGAATATT-C-GT-ATATAAATGA-AATTAA-A------ATGATG-ATATACATCGACA--TTAAAAATAGTGGTGGAA-TTGACGTTattatatacacttatttaaatatagcgtgtatttttcaaaagccagaagtctcgcgtagccagtgtttttcggtccactccgctcgcccgcgctaatagggagcgggtgcatccgcgacaccctttggctagtcgaagataagaaatacatgttttctaacaaatgatagttttacaatcattttccacaggtgaaaatgcactaagtatgatttatactcgatacacattaaaattttaccaacattacagtataatatttataaaatgtaacacaataccagtgctggcgtacgatggcaggcatggtcatgtttagattcaaaatatctgcatttcatttatattcttgaagattaggggggggaaaaatttgaggttttttgtatttgtgctaaatttgtgtgaatattcgtatataaatgaaattaaaatgatgatatacatcgacattaaaaatagtggtggaattgacgttcatacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|30 : aaaataaattgatggaaatttcaccgagcacgctctccattatatgaaacagattgtgaacctccactgacctgaccttgaagtctctcgctctataatcataaatacgatacaacacgctgattttgaatgctttcgtcccgctttcattagtcctttcaacgtctcgtgattttttttaaaaaagtgtcttcgtacataattttgtaccgaacacactaaacatcgttacctttgatgaatttgtattagaTCTAGCTCTATA--CA-A---AA---G-AC-GATA--CA---------C-ACG-TG-ATTT-G-AA-TGCA-TT-G-----TCC-GCT-TTCA--T-AGTC--TT-catacaagtgtttaattgatcttgaatctgtggtaaacggggacgcgtgcttcgtaaagctttctgtttagaacccgccactcctttaactcgattatcaatt
gi|33 : ttatcaGCC--C-A--CA-C-TTT-TG-CAA-C-C---CAAGAAA---C---AT-----AAG---TT--AG-ATGG-A------ACGTACGG--TT---AA--G-G-GATT
gi|4 : CCCCGCC--C----CA---TTT-TA-CAA-C-C---CAAGAAA---C---AT-----AAA---TT--CG-ATCG-A------CCATACGG--TT---AC--A-G-GATTTC---AG-G-CT----GTGTT----TGA-ATAT-CA---T-T----AAA-AA-C---TTTTATAA---AT-T---CGTAC-AGCGATA-CCCGTA-TG--TTA-AA--GTGCCAATATTTTA-AAAAATGAA---TTGGGA-GG-AAAAATT--T-CAC-----T-A---GCA--C-C----ACTT--TAT--TATG---GAA-----AC-CAGATT-TGAA-C-TCCA-TGA---CC-T-A--CT-T----G-A--A---TCTCTCGCTCTATA--CA-A---AA---G-AT-G-TA--CA---------C-ACG-TG-ATTT-G-AATTGCA-TT-G-----TCC-GCT-TTCATTT-AGTC--TT-CAA---CGTCTC-GTG----A--AT--TTTAA---AAA---AAGTGTCT-T-CGATTATATAA-T--TATT-T----AACACACCTAA--AGC--TA-CTTAG-ATAAATTTGAATTTA-GATATT---TGTAC-------AA--------------GC-AC-----AA------TTC-GC----AGCCAAACAGGGT--TTT-CGGTCC-ATTCCGCTC-CCCGCAC----AGGGAGCGGGGTGCA-CCG-AAAA-CC--TT-GCTAG-TGAAGATA--AAATCTGT-TTTT---C----TAAACAAATGATAG--TTTAC-ATCA-TTTGCCA-AGGTG-AAATG-CACT-AGTA----GATT----TA---G-T----TTAT-TC-ATCAAA-ATT--AATTTTCAC--AATCATTACA-TATATTTTAAT-TATAAAATGTAACAC-ATA-C--------ATGCTG-GCG--CACAT-GCAGGCATG----TA-TTAA-CATGCAATCAAAAT-ATC-GCATTCCT---T-TATATTCTTGAAAGAT------AGGGATATAT---------------TT---TGTG-CT--AAA-TTGT-GTGAATATT-TAGT-ATATAAAT-C-AATTAACA------AT-ATA-ATATACATCGA-A--TT--AAATAGT-GTGGAA-TTGACATTT----G-GTTCTAc
gi|5 : CCCCGCC--C-A--TA-C-TTT-TA-CAA-C-C---CAAGAAA---C---ATG----AAG---TT--CG-ATGG-A------ACGTACGG--TT---AT--A-T-CATT-C---AA-G-CTCAGTGTGTT----TGA-ATAT-CA---T-TTAATAAA-AA-C---TTTTA-AA---AT-T---TGTAC-AGCGGTA-ACCGTA-TG--T------------GATAATTTA-AAGAATAAA---TT--G--GA-AGAAATT--T-CACTTGACC-A---CCAGTC-C----TCTC--CAT--TATG---AAA-----AT-TAGATT-TGAA-C-TCCA-TGA---CC-TTC--CT-T----G-A--A---TATCTCGCTTTATG--CA-A---AA---G-AC-GATAGGTA---------CCACA-TG-ATTT-G-AA-TACA-TT-G-----TCC-GCT-TTTA--T-ATTC--TTTCAT---TGTTTC-GTG----T--TT--TTTTTT--AAA---AAGTGTCT-T-CGA-TACATAA-TA-TATTATACC-AACACA-CTAA--ATT--TA-CTTTC-ATAAA-TTGTATTTA-GATAAA---TGTAT-------Aca
gi|6 : gCCCCGCC--C-A--TA-C-TTT-TA-CCA-C-C---CAAGAAA---CTTAATT----AAG---TT--CG-ATTG-A------ACGTACGG--TT---AA--G-G-GATT-C---AG-A-CT----GTGTT----TGA-ATAT-CA---T-C----AAA-A--C---TTTTA-AA---AT-T---CGTAC-AGCGATA-ACCGTA-TG--TTA-AA--CCGCCGATAGTTTA-AAAAATGAA---TT--GG-GG-AAAATTT--T-CAC-----C-A---GCA--C-C----TCTG--CAT--TATG---GAA-----GC-AAGATT-TGAA-C-TTCA-TGA---CCTT-C--CT-T----G-A--A---TATCTCGCTCTATA--C--A---AA---G-AT-GATA--C----------C-ACG-TG-ATCT-G-AA-TACA-TT---------C-GA---ACA--C-A--------CGA---AGCCTC-GCGTTTTT--TT--TTTTA---ATT---TAGTGTCT-T-CGA-TACATAATT--TATT-TACC-AACTCA-TTAA--ATC--TA-CTTTA-ATAAA-TTGTATTTA-GATAAA---TGTAT-------AA--------------taactattt
gi|7 : aCCCGGCCACC-A--CA-C-TTT-TA-CAA-AAC---CAAAGAA---C---AT-----AAAAATTT--CG-ATGG-ACCAATAACGAACGC--TT---AAGCA-G-GCATTC---AG-G-CT----GTGTG-----GACATATTCA---T-TGGA-AAA-AG-C---TTTTATAAGAAATAT---CGTAC-AGCGATA-CCCGTAGTG--TTA-AA--TCGTCGATATTTTATAAAAATAAA---TT--G--GG-AAAAATTACT-CAT-----CAA---GCA--C-CGACTTACC--CAG--TACGATTGAATTCACAC-CAGAGT-TGAA-CGTCCA-TTAACCCC-T-ATCCT-T----G-A--AATCTTCTTCGCTCTA-A--TA-ATTTAATATG-ACGGATA--CAAGGGTCAGTC-GCA-TGAATTT-G-AA-TGCATTT-GCTCACCCC-GCTATTCA--T-AGTCT-TT-CAACCGCGTCT--GTT----A--TT--Tctatttaaatat
gi|8 : gc-ATGTATATCGA-A--TT-AAAATAGT-GTAGAA-TTGACGTTT----GTGTTaa
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAACAAGGATCCAGTCGCGTCTTATCATTCTGTTTAGACCCGCCCACTCCTTTTATCAATTATTCATCGAAGGAATGGAAAGATTACAAACTTGACAGAAAACTCCCGTATGAGGTTTAGAAATCAGTCGTTTTTCAGCTTATTCCTAACATGACAATAAACAAAGGCACTATCAAAAGTTTTCAGAACTCATTCTTTGTGGCGTTTTATGTAAAAAAAATCTAAAACCCTTTAGTTAATTAGTTTTGAGTTGTAGTCAATGTAAAAGGTGACAGCGCGATATGGATACTGCACTTCATC
Unaligned ( gi|10 ): GTAAACGGGGATCGCACGCGGTCTATTCATATTCCTAAACTTTCTGTTTAGACCCGCCCACTCCGTTTATCATAGTGAAAGATCACAAACCTCGACGAAAACTGCCCGGTAGGAGGTTTAGAAATCAGTCGATTTTTTCAGAAACAAAGGGAACTATCAAAAGTTTTCAGAAATCATTCTTTGTGACGTTTATGTATTAAATTCTAACTTTAGTGTTGTAATTTTGAGTTTGTAGTCAATGTACATTGTAAAAAGGGGTCAGCACATATGGAGACTTCACTTGATCC
Unaligned ( gi|12 ): TCATTTTTGTTTAGACCCAACCACTTTGTCATTATTTATGAAGGATTACCATGATGAAAACTGCTTGTTAAACCTGGGTTTAAAATTCAGTTGATTTTTCAGCATTCCTCGTGACAAAAAACAAAGGGGACTATTAAAACTATTCAGAAACCATTGTTTGTGGTGTCTTAAGTTTAGAATTTTAACTTGTGTTGTACAATATAATTGCTTTTATTGACCATGGAAAAAGGGCATATGCCAATAGCTGTCTCACGTCTTCCTT
Unaligned ( gi|19 ): TTGGTTGCAGATTCAGCAAATTGTTGGCATTTCTTGAGGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTTACATTGTAATTGCTTTTACTGGCAACGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|20 ): TGGTTGCAGATTCAGCAAATTGTTCGGCATTTCTTGAGATGAAAAACAAAGGAGACTAATAAAACTAATCTGAAACCATTGTTTGTGGTGTCTAAGTATATAATTTTAACTTTTGTACATTGTAATTGCTTTTACTGGCAACGGGAAAAGGGGCAAGGCACAATGGTTGTTTAAACTCATCCTT
Unaligned ( gi|22 ): TTACATATTCATTTAAATTTTTGGGCATTTCTCGAGACGAAAAACAAATGAGACATTGTCTGTGGTGTCTAAGTATGTAATTTTAACTTTTGTTTAACATAATTGCTTGTATTGGCAACGGGAAAAAGGGGGCAGCTACAATAGTTGTTTAACTCATAC
Unaligned ( gi|25 ): AAAACATTCCATAACCTCCTCGTGGTGATTTAAGGTATTATAGTTTTAACTTTTGTACGAAATAATTGCTTTTTACATCGGCCACGGAACAGGGTTCATCTTCTAATAACTGTTTTAACTCATCCTT
Unaligned ( gi|26 ): AAATTCAGTTTAGTTTTCGGATCCTGTGACGAAAACAAGGAGACTATTAACTTCTATTTAAAAGAAGCATTGCCTATAGGATATATGTAACTTTTGAATTAAAATTGTTTTTACTGGCCA
Unaligned ( gi|27 ): GTCTGTGGTATCTATGTATAAAATTTTAACTTTTGTACAGTAGAAGTATCTTTATTCACCAAAGAATTGGGGTCAAATCCAATAGCTATTTTACATTTTCC
Unaligned ( gi|31 ): TAATCTGAAACCATTGTCTGTGGTGTCTAGGTATATAATTTTAACTTTCGTACACTNATGTCTGCT
Unaligned ( gi|32 ): GTAGTAGTTTTGAGTTTGTAGTCAAATTAAAAAGGGGCCAAAACAAACGGAGACTGCACTTCATC
Unaligned ( gi|34 ): TAGTCAATGTAAAAAGGGGCCAGCACATATATGGAGACTGCACTTCATCC