lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111
lowQualScore : 11 1111 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 33333333 7777777777777 99999999999999999999999 222 77777777777777777777777777777 9999999999999999999999 1 111 5555555555555555 1 1 11 4444444444444 2222 11 333333 444444444444 1 11 1 11 22222 1 33 1 1 33333333 22222222222222222222222222222222222222222222222222 1 1 111 1111 222222 11111 111
lowQualScore : 5 22 66 2 88 0 8 4444 4 4 4 1 5 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 7 77777777 7777777777777 4 66666666666666666666666 333 1 0 7 33333333333333333333333333333 6 99 1 6 2222222222222222222222 6 6 5 6 6 111 3 7 9999999999999999 3 3 88 7 8888888888888 2222 22 777777 6 000000000000 2 0 66 0 33 3 66666 0 2 77 0 0 44444444 2 11111111111111111111111111111111111111111111111111 6 6 6 0 444 8 8 8 8 0 7777 8 888888 3 44444 6 666 7
lowQualScore : . .. .. . .. . . .... . . . . . . ............................................................................................................................................................................................................................................................................................................................................................................ . . ........ ............. . ....................... ... . . . ............................. . .. . . ...................... . . . . . ... . . ................ . . .. . ............. .... .. ...... . ............ . . .. . .. . ..... . . .. . . ........ . .................................................. . . . . ... . . . . . .... . ...... . ..... . ... .
lowQualScore : 0 22 11 3 88 9 9 9999 4 4 4 4 2 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 3 77777777 3333333333333 0 33333333333333333333333 333 0 7 3 88888888888888888888888888888 7 22 7 7 7777777777777777777777 7 7 0 7 7 222 2 3 3333333333333333 3 3 33 3 0000000000000 7777 00 000000 7 777777777777 5 0 00 0 22 2 55555 0 2 55 0 0 88888888 5 44444444444444444444444444444444444444444444444444 0 0 0 8 000 0 4 0 0 8 2222 0 000000 2 88888 0 333 3
consensus : GTGG-CG--TA--GCTAGGACCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCTGGGGG--------TCGCC-AAGGG-----CTCCAGC-GG-TCCAGGGCAGCGCC-CTGGTGG-GG---GT-CGAGGGGC-AA----GCCCCCC------------G----ACGGAAAACAGA-TTTCGTGTT--T------TTG---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAAT-AC-AC-AAAATT--TT----G--GGT--CTCC-T--TAATAAAATTTCG-T--TT-AGT--AG-A-GGGAAAA---A-ATGNACA-----AT------------TTTA--CAA---------TT--TAANATTTTNTAAAT-------------A--ATCAAATTAAATGAC-GA----AAAAATGT--ACAAAAAAA--ATGCATTTTTTTTNTTCCAGAAAAAAAA-AAATGC--AA--A----T----CCTCT---GGCGAAAAGCCATTAAAAAACCC-CA-AC-AAT--TTT---------AA--AGCTGA-T--TATTTGGGG-GGAAT----TTT-A-TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATAT-AGA--ACCAT-TATT-CAA--TGGAAT------AT-T---GTCA--A-TTAGAGGCTTGAAAGA-A-GAAAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCNGTT-TTCCCC-AGG-AGT-GTCG-TGGG-AGGTGGGAG-TTGTTT--GC-GAGGGC-GGG--TTGTTTGC--GAGTCGTGAATGATT-TCCGCATTGTTTTGAAATGATCAAA---G-TGTC-TGA-GTCAGAGAG---ATG-AAN-----TAAGAGTTC-ANA-TATCGGNC-TAAAGGGGAGGCGT
Reference ( gi|4 ) : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-ATGGGTCTGTGGG--------TCGCCTAAGGG-----CTCCAGC-GATTCCAGGGCAACGCC-CTGGTGGTGGTATGTCAGAGGGGC-AAT---GCCCCCCCCCC-----TCCG----ATGGAAAACATA-TTTCGTGTT--T------TTG---A----GATC---------AC-----------T---T----------CTA-GGCACATG--TAAT-GC-AC-AAAATG--TT----G--GGT--CTCC-A--TAATGAAATTTCG----TT-AGA--AG-A-GAGAGAA---A-ATGTACA-----AT------------TTTA--CAA---------TTG-TAAGATTTTATAAAT-------------G--ATCAAATTAAATGAC-GA----AAAAATGT--GCAAGCAACTTATGCATTTTTTTTTTTTCAGAAAAAAAATAAATAT--AA--A----T----CCTCT---GATGGAAAGCCATTAAAAAACCC-CAAAC-AAT--TTT---------AA--TGCTGA-T--TATTTGGGG-GGAAT----TTTTATTAGG-----TATTTTG-A-TCTTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------GTATCAGACAACCAT-TATT-CAA--TGGAAT------AT-T---GTCA--A-TTAGAGGTCTGAAAGCGA-GAAAAGATACA-A--GAT---AGGAGA-TGCA-AGTGC-GGGG-TGCTTG-AGAAGTT-TTCTC--AGG-AGT-GTCG-TGGGAAGGTGGGAG-TTGTTT--GC-GAGGGCGGGG--TTGTTTGC--GAGTCGTGAATGATTGTCTA-ATTGTCTTG-AATGATCAAA---G-TTTC-TGA-GTCAGAGAG---ATG-AAT-----TAAGAGTTC-ACA-TGTCGGTC-TAAAGGGGAGGCGT
gi|6 : GTGG-CG--TA--TCTAGGATCTTGAGGATGTAGTAGACACCAAA--T-AA-GGC-G-A-GGGTC-GGGGG--------CCGCCCAA-GA-----CCCCAGT-GG-TCCAGGGTAGCATC-CTTGAGGGGG------GGGGGGGC-ACA---GCGCCTC-----------------ACGG-AAACAGATTTTCGTGTT--T------TGA---A----GATC---------ACTTGGGAACAAAT---T----------CTATGGAACATG--TAAT-AC-A--AAAATT--TT----GAAAAT--CTCT-C--TAATACAATTTCGGTGACT-AGAGCAA-A-AAAAAAA---A-ATAAATA-----A---------------TA--CAA-------------TAA------ATAAAT-------------A--A--AGA-TAAATAA---A----AAAAAAGT--AC
gi|7 : attcaaacacacatgtagtcaatttcaacacaagccctatttatcccaaaacggcttgaaatctcacgctggtgtcactatcaaaattactcatcaacattcaaagtggttgtatatgtaagagctctttgttcatctaaactatttgaaattagggcgcaaccccgttttacaatcatgcttgcataccccccccaaaaatcccctaaaaaaagagggaaagacaaaaaatacaccaacagttcgtatcattgttttgaggttttcctccagaatactacataaaagtatattaaaagaaaacacaaaacatgccagattaatgtccgttaacaGTGGTCG--TA--GATAGGACTTTGA---AGTA-TAGGCACA-AA--TTAA-GGC-G-AGGGATCCGGGGGGAGGGAGGTCGCCCAAGG-----------------TCCAGGACAGCGCC-CTGGTGG---------AGAGTTGC-CAC---CCCCCCCCCCCCCCCTCCCGGCACAAAGAGAACAGA-TTTCATTTT--T------TTGACTA----CATCTTCTTGGGAACTAAA-------T---T----------CTACGGCACATG--TACT-AT-AC-AAAA-G--TTTAACG--GCT--CT-C-ATTTAATAAAATTTCG----TT-AGT--AG-A-AGGACAA---A-Agttccaatttgtt
gi|11 : GTGG-CG--TA--GCTAAGACATTGAGGATGTA-TAGGCACC-AA--T-AAAGGC-G-ACGGGTATAT------------------AGGG---------AGC-G---CCA----AAGGCCTCCAGTGG------GTCC-AGGGGC-A-----GC----------------------A-GGAAAACAGA-TTTTGTATT--T------TTG---A----GATC---------AC-----------T---T--------------GG-------------GG-AC-AAACTAGTTT----G--GGT--CTCCTT--TAATAAAATTTCG----AG-AGT--AG-G-CAAAAAA---A-A-GTACATGTGTATG-----------TTGA--TGA---------T---TAAGATTTTAgaggggaacaatccgactgtttttaccagaggtctttcttgataatatatattttaatattttttcagcgtaatcaaatcaaatgacggaaaaaatgtatttttaaaaaatcaaacaaacaaaaacaatgcatatttttcttcctatggtggaaagcaggttatccgggaaaaaatttggtattctgatactgaatgccataatgca
gi|2 : caGTGG-TT--TA--ACTGGGATCTT-AGGAAGTA-TAT-CACC-AA--T-A----C-G-GTAGGTTCGGGGG----------GCC-AAGTGAAAACCT------GGTCCAAGGGCAGCGAC--TGAGGG-GG-------GATGGGC-A-----GCCCCC------------------ACGGAAAACA-A-TTTCGTGTTTGT------TTG---AATTGGAT----------AA-----------T---T----------CTA-TGAACATGTATAAT-A--AC-AAAA
gi|18 : tcaaatatgaaatgtaacacacatgtatgcatataatattaggtgtcctttacaattaagagttccttatttatatatatccatgcgtgttatgattgaataaatgaaatcaaacagctagtcaatttcaacacgaagcctatttcatcaaatacgctgtactacaagtacatgtcactatatatagtcaacacttacatcacattcacagcggccggcatgtatatactgtatagactttgtatctacaactatttatgaagattagggcgaaaaacccattttactaactcatgcatgataccccccccccctaagaaaacagaaacaaacataaaataaaaaggcaccacatggaaaaaaaagcaaacccaaaaaaattaagcacaatcaatcattcatcttattgtgaggttcttttctctacgtctactattaattaagatctaacagagaaccaaaacatgcagtatagttaacaGTGG-CG--TATAACTGGGATCTTGAGGAAGTA-TATACACCAAA--T-AA-GGT-G-AGGGTTCTGatttttaattttctcatttaaaagaccataatatacaataaacagataagaatttgaagaaagtacagttccaatttgtttccaaaagtcttttttttttttaacaaagatttttaatatcttcagctaaacgaaatttctgaaagagctgtatcttctgggtgagatatttttacatttaattcatgttcagaaaaaagacattgct
gi|22 : aaaacaaaacatgccagattatattgttaacaGTGG-CG--TA--GCTAGGGCCTTGGGGAAGTAGTAGgg
gi|21 : caTGG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT
gi|1 : GG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTC--TGGG--------TC
gi|5 : G--TA--GCTAGGGCCTTTAGGATGT--TAGGCACC-AAATT-AA-GGC-GGATGGGTCTGTGGG--------TCGCAAAAGGG-----TTCCAGC-GAGTCAAGGCAAACGCC-C-GGGAGTGGGAGGTCTGAGGGGCAAAT---GCCCGC-----------CCG----ATGGAAAACATA-TTTCGTGTT--T------TTG---A----GATA---------AT-----------TTTCT----------CTA-GGCACATG--TAATAGCAACAAAAATT--TT----G--GGTTCTTCC-T--TAATGATATTTCG----TTAAGA--AGAA-GGGAGAAGGGA-AGAAAAA-----AT------------GTTA--TAA---------TTC-AAATATCTTTTAAcagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaggtccagggcagcgccctggtggggggttcgtgggggaactaagccccccgacaaaaaacagatttaatgtttttgagatcacttgggaacaattctaggcacgtgtattacacaaatttcaggtctcttgaaatctcgatcgttagtagaagggaaaaatatgtacaatccattgaattcttttaaccagaggtctttcttactaagattttctatatttattttcagcgtaatcaaattatatgacgaggaaaaaaatttcaataaaaaaaatgcattttttttattccagaaaaaaaaatgcaacaatgcctcctttggtaaaaagccataaaaatccatttaaaagctgattattggggggtgggggtgctattttgatattgaatgtcataattcagaaaaggtttcgattaattataatatatcagacaacctttattcaagtgaatattgtcaattagaggcttgaaagagagaaaagatacagatataaggagttgcaggtgagggagattgaactgttttcccaggagtgtcgtacgtgggagttgtggataattttctgccgattgttttgaatggtcaaagtgtctgaggtcaagagcacatgaattaaagtaagagttcatatatataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|3 : GGATCTTAAGGAAGT--TAGACACC-AAA-T-AA-GGTTG-AGGGGTCTGGGGG--------CCGCC-AAGAA-----C-CCAGTGGGTCCCAGGGCAGCATC-CT--TGG-GGGACGC----GGGG--------GACCCCC-----------------ACGGAAAACAGA--TTCGTGTT--TTTAGACTTG---G----GA-C---------AA-----------A---T----------CTA-TGAACATG--TAAT-AC-AC-AAAATT--TT----G--cagcagaatgcctctcctgaagattaaaaaaaaaaaatgccacctgctcctctgacgaaaagccattaaaaaacctccatttttaaaatgctgattatttgggggaggtgattgggtattttgatttgaatgccataattcagaaaaagggtttcgaactatttgagaacaccattattcaatggaattgaataattatagttaatattagaggcttgtaagagaagatacaagtgagaggagattgcaggtgcggggtgcatgtagctgttttccccaagtagtcgccgttgggaaggtgggagttgtttgcggagggcgggggtttgtttgctttagtcgtgaatgattttctacattgttttgaaatgatcaaagttttctgagtcagagagagttcatagcaacactatcggtcttaaaggggaggcgt
gi|1 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctTCCAGGGCAGCGCC-CTGGTGGGGG---GTTCGTGGGGG-AACTAAGCCCCCC------------G----ACAAAAAACAGA-TTTAATGTT--T------TTG---A----GATC---------AC-----------T---TGGGAACAATTCTA-GGCACGTG--TATT-AC-AC-AAA-TT--TC----A--GGT--CTCT-------TGAAATCTCGATCGTT-AGT--AG-AAGGGAAAA---ATATGTACA-----ATCCATTGAATTCTTTTAACCAGAGGTCTTTCTTACTAAGATTTTCTATATTTATTTTCAGCGTA--ATCAAATTATATGAC-GAGGAAAAAAATTTCAATAAAAAAA--ATGCATTTTTTTTATTCCAGAAAAAAAA---ATGC--AACAA----TGCCTCCTTT---GGTAAAAAGCCAT--AAAAATCC--------AT--TTA---------AA--AGCTGA-T--TATT-GGGG-GG-------------TGGGGGTGCTATTTTG-A-TATTGAATGTCA-TAATTCA-GAAAA--GGTTTCGATTAATTATAATATATCAGACAACCTT-TATT-CAA--GTGAAT------AT-T---GTCA--A-TTAGAGGCTTGAAAGAGA-GAAAAGATAC--A--GATATAAGGAGT-TGCA-GGTGA-GGGA--GATTG-AACTGTT-TTCCC--AGG-AGT-GTCG-T----ACGTGGGAG-TTGT--------------GGA--TAATTT-------TC-TG---------CCG-ATTGTTTTG-AATGGTCAAA---G-TGTC-TGAGGTCA-AGAGCACATG-AATTAAAGTAAGAGTTC-ATA-TATaaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaaaagctgataatatttggggggttggggtatttttatatttaatgtcatgattcagaaaaaaaaattgctt
gi|7 : ggcggttagctagggccttgggaagtataggcaccaatcaaggcgaggtgtctgggtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaggA---------TTT-TAATATTTTTTCAGC-------------GTAATCAAATCAAATGACGGA----AAAAATGT--ataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|8 : gtggtcgtagataggactttgaagtataggcacaaattaaggcgagggatccggggggagggaggtcgcccaaggtccaggacagcgccctggtggagagttgccacccccccccccccccctcccggcacaaagagaacagatttcatttttttgactacatcttcttgggaactaaattctacggcacatgtactatacaaaagtttaacggctctcatttaataaaatttcgttagtagaaggacaaaagaggggaacaatccgactgtttttaccagaggtctttcttgataatatatTTTTTCAAAAAGAACA-AAATATGCAA--A----A----CTGCTCGAGGTGGACAGACATTACTTTACACACACAT-AGTGCTTT---------AG--AGCTGCCT--TCTATGTGGTGGAAT----TTT-ATT--G-----AATTTTGCACTCTCGA--GCAAATAGATCG-GAAAA--TGTT-CGATTAAT-------TAC--GA--ACCATCTATTGCAACTTGGA-T------ATAT---GTCA--AATTAGTTGCTTGAAAAATATGTAAC--TACATA--GAT----GGA-A-TGCATGGTGCCGGGGCTGCTTG-A--ACTT-TTCCCG-AGGTAGT-GT-G-TGGGCAGGTGGGAGTTTATTTTGGC-AGGAGCTGGG--TTGTT--C--TAGT------------TCTACATTGTTTTGAAATGA-CAAATAGG-TCGC-TCA-G---GAGAG---ATT-AAG-----TAAGAGTTC-A-A-TATCTGCG-TAA--GGGCGGCGTatttttaaaaaatcaaacaaacaaaaacaatgcatatttttcttcctatggtggaaagcaggttatccgggaaaaaatttggtattctgatactgaatgccataatgca
gi|5 : aatataatcaacacatctactaAAAAAAAAAAAATGC--CA--CCTGCT----CCTCT---GACGAAAAGCCATTAAAAAACCT-C---C-ATT--TTT---------AAAATGCTGA-T--TATTTGGGG-GAGGT----G---ATTGGG-----TATTTTG-A-T-TTGAATGCCA-TAATTCA-GAAAAAGGGTTTCGA--ACT------ATTTGAGAACACCAT-TATT-CAA--TGGAATTGAATAAT-TATAGTTAATA-TTAGAGGCTTGTA----A-GAGAAGATACA-AGTGAG---AGGAGATTGCA-GGTGC-GGGG-TGCATGTAGCTGTT-TTCCCCAAGT-AGTCGCCGTTGGGAAGGTGGGAG-TTGTTT--GCGGAGGGCGGGGGTTTGTTTGCTTTAGTCGTGAATGATTTTCTACATTGTTTTGAAATGATCAAA---GTTTTC-TGA-GTCAGAGA------G-AGT-----TCATAG--CAACACTATCGGTCTTAAAGGGGAGGCGT
gi|3 : gtagctagggcctttaggatgttaggcaccaaattaaggcggatgggtctgtgggtcgcaaaagggttccagcgagtcaaggcaaacgcccgggagtgggaggtctgaggggcaaatgcccgcccgatggaaaacatatttcgtgtttttgagataattttctctaggcacatgtaatagcaacaaaaattttgggttcttccttaatgatatttcgttaagaagaagggagaagggaagaaaaaatgttataattcaaatatcttttaacagcagaatgcctctcctgaagattAAACGAAT--TTTCTAGAAAGAAA--AGCTGA-TAATATTTGGGG-GG---------TTG--GGG-----TATTTTT-A-TATTTAATGTCA-TGATTCA-GAAAA--
gi|7 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctggatcttaaggaagttagacaccaaataaggttgaggggtctgggggccgccaagaacccagtgggtcccagggcagcatccttgggggacgcgggggacccccacggaaaacagattcgtgtttttagacttgggacaaatctatgaacatgtaatacacaaaattttgaaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaa---------AA--AGCAGG-T--TATCCGGGA-AAAAA----TTT-----GG-----TATTCTG-A-TACTGAATGCCA-TAATGCA-aaaaattgctt
gi|19 : gtggtcgtagataggactttgaagtataggcacaaattaaggcgagggatccggggggagggaggtcgcccaaggtccaggacagcgccctggtggagagttgccacccccccccccccccctcccggcacaaagagaacagatttcatttttttgactacatcttcttgggaactaaattctacggcacatgtactatacaaaagtttaacggctctcatttaataaaatttcgttagtagaaggacaaaagaggggaacaatccgactgtttttaccagaggtctttcttgataatatatattttaatattttttcagcgtaatcaaatcaaatgacggaaaaaatgtatttttaaaaaatcaaacaaacaaaaacaatgcatatttttcttcctatggtggGCTGA-T--TATTTTGGT-GAAATGAGGTTTT----GG-----TATTTTG-A-TGTTGAATACAA-AAATTCATAAAAA--AGTTTTG
gi|9 : tttaaacagaaGGTGA-TGCA-GGTGC-GGGG-TGCT----GAAGCTGTTCTCCTAGG-AGT-GTC---------GTGGAAG-T--------------------------TTGC--GTGTTGTGAATGATT-TCTG-ATTGTTTTG-AATGGTCAAG---G-TGTCTTGA-GTCAGAGAA---ATGAAAG-----TAAGACTTC-AGA-TACAGGAC-TAAAGGGAAAGC
gi|16 : C-GAGGG---AG--TTACTCGT--GAGCTATGAATGGTC-TCCG-ATTGTTTTG-AATGATCAAA---G-TGTC-TGA-GTCAGAGAG---ATG-Aagtgacattgcaccacagcttggtttatgtcttgttagcatcaatgactttaacaagcgaaatcctgttattttaacattttaatgttttgttattgtaaaaattatgtgtaggtacgtgccctgagtgcctaatggcagccacatcactg
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GTTCAAATGATGAGAAGATGTCATACGATATGAAAGCTGGGTTATGAATATTAGGCCTGTCCTTTACAAAGTGTTCCTCTATTAGACTATATCATGCTGACTATGATGGAAGTTCTTTTCTGAGGGACTGCCGCAGACAACCTTAAGTTCGAGAGAAACACCTAGGTCAATTCAACACGAAGCCTATTTCATAAAAAAACGGCTTGAAATCTACGCTATACAAGTACATGTCACTAGTCAACACTTACTCCTATATCACATTCACAGCGGCTGTATATTGTA
Unaligned ( gi|12 ): AAGATGAAATGTAACGTATAATATGCATATAATATAGGTTCCTTTAACATATCTATACTCATGCGTGTTTTTTATTTTAATTTTAGCTATGAAGTAGTGGTTGTGTATAATGAATTTAAAAGCTAGTTTTTGGTCAATTTTCCAATATGAGGCCTATTTCATAAAAAACAGCTTGGGAATGTACACAGTATACATTTCACCTAGTCAGCAT
Unaligned ( gi|13 ): GTTCTCGCGAGTGTCGTGGACGTTAGTTGCGATTGTGAAAGATTGTGATTGTTTGAATGCGCATGTCTGAGTATACAGTAGACTAATAGGAAAGAGTTGGACCATGGACACGCGTGATTTATATCTTGTTAGCATTCATCTTTATATCAAAGATCTGGTATTGTAAGTTTTTCTTGTAACATTAGTGTGCA
Unaligned ( gi|14 ): TATATTTTGTCAGCATCAACGATAAAAAGGCGAAAAAAATCTGGTATTTTATCACACTTTAATTTTTTTCTCTGTTTTATTTTCATTTTTTGGGGGGTAAAAACTATGTGTAGTGCCTAATGGCAGCTACGCCACTGA
Unaligned ( gi|15 ): GTTGACATTGCGTCACGGTCGGGTTTATATCTTGTTAGCATCAATGACTTTTGATAAGCGTAAATTTAATATTCTATTTTTTTTATTGGTAAAATTGACATGAAGGCA
Unaligned ( gi|17 ): AATGACTTTCAATAACCGAAAATATGGTATTTTATAATATGAAAATTATGTGTAGGCACGTGCCTTAAGTGCCTAATGGCAGCTACGTCACTG
Unaligned ( gi|20 ): TATTTTATTGAAAATTATATTGTAGGCACATGCCTACTCAAGGCCTAACGACGCTACGCCCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11 1 11111111 1111 11111 3333333333333 55555555555555555555555555555555555555555555 111111111111111 6666666666666666666666666666666666666 1 111 1 111111 3333 222222222 11111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 2222 99999999999999999999 11 1 1111 555555555555 111 222222 4444444444 5555555555555555 11111 666666666666666 11 1 1 11 1 333333333333 1111 1111 11 22222222 1 1 2222222 99999999999999999999999999999999999999 22222 1 111 22222222222 2222222 1
lowQualScore : 4 11 55 1 7 4 77 8 4 4 4 777 2 5 5 55555555 4 3333 5 5 0 11111 2222222222222 66666666666666666666666666666666666666666666 2 5 66 888888888888888 5555555555555555555555555555555555555 0 1 66 3 111 0 3 000000 77 888 0 5 5555 3 111111111 77777777777 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 3 22 1111 55555555555555555555 33 3 1 0 4444 000000000000 777 2 111111 6666666666 77 5 77 0 5 3333333333333333 44444 5 5 7 5 5 99 0 3 999999999999999 33 0 0 33 0 111111111111 4444 3 5555 33 22222222 8 8 8 6 6 7 6 0 3 6 7777777 2 6 88888888888888888888888888888888888888 44 66666 5 111 2 6 6 6 33333333333 3 8 6666666 1 0 3
lowQualScore : . .. .. . . . .. . . . . ... . . . ........ . .... . . . ..... ............. ............................................ . . .. ............... ..................................... . . .. . ... . . ...... .. ... . . .... . ......... ........... . ......................................................................................... . . .. .... .................... .. . . . .... ............ ... . ...... .......... .. . .. . . ................ ..... . . . . . .. . . ............... .. . . .. . ............ .... . .... .. ........ . . . . . . . . . . ....... . . ...................................... .. ..... . ... . . . . ........... . . ....... . . .
lowQualScore : 4 00 55 3 3 0 55 0 0 0 0 000 7 7 7 99999999 0 9999 0 0 2 00000 1111111111111 66666666666666666666666666666666666666666666 5 0 99 666666666666666 6666666666666666666666666666666666666 0 0 99 4 444 0 2 888888 99 333 1 7 3333 3 888888888 88888888888 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 2 55 2222 00000000000000000000 88 2 0 0 2222 888888888888 555 0 555555 5555555555 99 7 99 1 7 7777777777777777 33333 7 7 0 7 7 22 8 2 888888888888888 88 0 0 88 0 555555555555 8888 2 0000 22 55555555 0 0 0 7 7 5 7 8 3 7 8888888 5 7 77777777777777777777777777777777777777 00 22222 5 777 5 7 7 7 55555555555 8 8 0000000 0 0 2
consensus : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTA-ATGAAATTTCG----TNAGTAG-A-G-----GGAAAA---A-A----NGNACA-----A------------T-TTTA--CAA---------TT------T-AAGAT-T-TTNTAA------------AT-------------AATCAAATTAAATGAC-GA----AAAAATGT--------------------ACAAAAAAA--ACGCATTTTTTTTTTTCCAGAAAAAA-AA-AA-ATGCAA--A----T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACAAT--TTTAAA--GCTGA-T--TATTTGGGG-GGAA-T-----TTT--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT----ATATN--AGACAAC--CAT-TATT-CAA--TGGA-AT------ATT---GTCAA-T--TAGAGGCTTGAAAG-A-AGAGAAGATACA-AG--AT---AGGAGAT-GCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAG-TTGTTT--GCG-AGGGC-GGG---TTGTTCGC---AGTCGTGAATGATTTCC-GC--ATTGTTTTGAAATGATCAAA---GTNT-C-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTCT-AAAGGGGAGGCGT
Reference ( family-807 ) : GTGG-CG--TA--GCTAGGACCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGTCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTA-ATAAAATTTCG-T--TTAGTAG-A-G-----GGAAAA---A-A----TGNACA-----A------------T-TTTA--CAA---------TT------T-AANAT-T-TTNTAA------------AT-------------AATCAAATTAAATGAC-GA----AAAAATGT--------------------ACAAAAAAA--ATGCATTTTTTTTNTTCCAGAAAAAA-AA-AA-ATGCAA--A----T----CCTCT---GGCGAAAAGCCATTA----AAAAACCCC-AACAAT--TTTAAA--GCTGA-T--TATTTGGGG-GGAA-T-----TTTA-TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT----ATAT---AG--AAC--CAT-TATT-CAA--TGGA-AT------ATT---GTCAA-T--TAGAGGCTTGAAAG-A-AGAAAAGATACA-AG--AT---AGGAGAT-GCA-GGTGC-GGGG-TGCTTG-AGCNGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAG-TTGTTT--GCG-AGGGC-GGG---TTGTTTGCG--AGTCGTGAATGATTTCC-GC--ATTGTTTTGAAATGATCAAA---GTGT-C-TGA-GTCAGAGAG---ATG-----AANTAAGAGTTCANA-------TATCGGNCT-AAAGGGGAGGCGT
gi|1 : GG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---GGG
gi|1 : GG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---GGTTC-GTGGGGGAACTA-A--GCCC-------------CCC-------GAC----AAAAAACAGA-TTTAATGTT--TTT------G---A----GATC---------AC-----------T---TGGGAACAATTCTA-GGCACGTG--TATTA-C-AC-AAA-TTTC---A--GGT--CTC-T-T-----GAAATCTCGATCGTTAGTAG-AAG-----GGAAAA---ATA----TGTACA-----ATCCATTGAATTCT-TTTAACCAGAGGTCTTTCTTAC----T-AAGAT-T-TTCTAT------------ATTTATTTTCAGCGTAATCAAATTATATGAC-GAGGAAAAAAATTTCA------------------ATAAAAAAA--ATGCATTTTTTTTATTCCAGAAAAAA-AA-A---TGCAACAA----TGCCTCCTTT---GGTAAAAAGCCAT------AAAAATCC------AT--TTAAAA--GCTGA-T--TATT-GGGG-GG--------------TGGGGGTGCTATTTTG-A-TATTGAATGTCA-TAATTCA-GAAAA--GGTTTCGATTAATTATAATATATCAGACAAC--CTT-TATT-CAA--GTGA-AT------ATT---GTCAA-T--TAGAGGCTTGAAAG-AGAGAAAAGATAC--AG--ATATAAGGAGTT-GCA-GGTGA-GGGA--GATTG-AACTGTTTT-CCCAGG-AGT-GTCGT------ACGTGGGAG-TTGT--------------GGA---T-----------------AAT--TTTCT-GCCGATTGTTTTG-AATGGTCAAA---GTGT-C-TGAGGTCA-AGAGCACATGAATTAAAGTAAGAGTTCATA-------TATtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaggtccagggcagcgccctggtggggggttcgtgggggaactaagccccccgacaaaaaacagatttaatgtttttgagatcacttgggaacaattctaggcacgtgtattacacaaatttcaggtctcttgaaatctcgatcgttagtagaagggaaaaatatgtacaatccattgaattcttttaaccagaggtctttcttactaagattttctatatttattttcagcgtaatcaaattatatgacgaggaaaaaaatttcaataaaaaaaatgcattttttttattccagaaaaaaaaatgcaacaatgcctcctttggtaaaaagccataaaaatccatttaaaagctgattattggggggtgggggtgctattttgatattgaatgtcataattcagaaaaggtttcgattaattataatatatcagacaacctttattcaagtgaatattgtcaattagaggcttgaaagagagaaaagatacagatataaggagttgcaggtgagggagattgaactgttttcccaggagtgtcgtacgtgggagttgtggataattttctgccgattgttttgaatggtcaaagtgtctgaggtcaagagcacatgaattaaagtaagagttcatatatataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|11 : ggcggttagctagggccttgggaagtataggcaccaatcaaggcgaggtgtctgggtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaGTGG-CG--TA--GCTAAGACATTGAGGATGTA-TAGGCACC-AA--T-AAAGGC-G-ACGGGTATATAGGGAG-CGCC-AA-AGG-----CCTCCAGTGG-----------------------------------G--TC-CAGGGG----CA----GC--------------------------A-----GGAAAACAGA-TTTTGTATT--TTT------G---A----GATC---------AC-----------T---------------TG-GGGACA-----A------AC-TAG--TTT---G--GGT--CTC-CTTTA-ATAAAATTTCG----AGAGTAG---G-----CAAAAA---A-A----AGTACATGTGTA------------TGTTGA--TGA----------T------T-AAGAT-T-TTataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|16 : caGG-TGCTGG-AACTGTTCTCCC-AGG-AAT-GTCGA--GGG-AG--------------------------------TTACTCGTG--AGCTATGAATGGTCTCC-G---ATTGTTTTGAA-TGATCAAA---GTGT-C-TGA-GTCAGAGAG---ATG-----Aa
gi|18 : tgcaGTGG-CG--TATAACTGGGATCTTGAGGAAGTA-TATACACCAAA--T-AA-GGT-G-AGGGTTCT---GGG
gi|19 : aaaacaaaacatgccagattatattgttaacaAA--GCTGA-T--TATTTTGGT-GAAA-TGAGGTTTT----GG-----TATTTTG-A-TGTTGAATACAA-AAATTCATAAAAA--AGTTTTG
gi|2 : tttaaacagGTGG-TT--TA--ACTGGGATCTT-AGGAAGTA-TAT-CACC-AA--T-AC-GGT-A----GGTTC---GGGGG--GCC-AA-GTGAAAACC-T-----GG--T-CCAAGGGCAG-CGAC-TGA---GG-G-G---G-----GATGGG----CA----GCCC-------------CC---------AC----GGAAAACA-A-TTTCGTGTTTGTTT------G---AATTGGAT----------AA-----------T---T----------CTA-TGAACATGTATAATA---ACAAAAATTTT---T--AAT--TTT-C-TCATTTAAAA
gi|21 : tcaaatatgaaatgtaacacacatgtatgcatataatattaggtgtcctttacaattaagagttccttatttatatatatccatgcgtgttatgattgaataaatgaaatcaaacagctagtcaatttcaacacgaagcctatttcatcaaatacgctgtactacaagtacatgtcactatatatagtcaacacttacatcacattcacagcggccggcatgtatatactgtatagactttgtatctacaactatttatgaagattagggcgaaaaacccattttactaactcatgcatgataccccccccccctaagaaaacagaaacaaacataaaataaaaaggcaccacatggaaaaaaaagcaaacccaaaaaaattaagcacaatcaatcattcatcttattgtgaggttcttttctctacgtctactattaattaagatctaacagagaaccaaaacatgcagtatagttaacaTGG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---gaccataatatacaataaacagataagaatttgaagaaagtacagttccaatttgtttccaaaagtcttttttttttttaacaaagatttttaatatcttcagctaaacgaaatttctgaaagagctgtatcttctgggtgagatatttttacatttaattcatgttcagaaaaaagacattgct
gi|22 : GTGG-CG--TA--GCTAGGGCCTTGGGGAAGTAGTAG
gi|3 : caGGATCTTAAGGAAGT--TAGACACC-AAA-T-AA-GGTTG-AGGGGTCT---GGGGGCCGCC-AA-GAA-----C--CCAGTGGGTC-CCA-GGGCAG-CATCCT----TGG-G-G---G--AC-GCGGGG----------GACC-------------CCC--------AC----GGAAAACAGA-TT-CGTGTT--TTTAGACTTG---G----GA-C---------AA-----------A---T----------CTA-TGAACATG--TAATA-C-AC-AAAATTTT---G--
gi|3 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctAAA--GCTGA-TAATATTTGGGG-GG----------TTG--GGG-----TATTTTT-A-TATTTAATGTCA-TGATTCA-GAAAA--aaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaaaagctgataatatttggggggttggggtatttttatatttaatgtcatgattcagaaaaaaaaattgctt
gi|4 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctggatcttaaggaagttagacaccaaataaggttgaggggtctgggggccgccaagaacccagtgggtcccagggcagcatccttgggggacgcgggggacccccacggaaaacagattcgtgtttttagacttgggacaaatctatgaacatgtaatacacaaaattttgaaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaGTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-ATGGGTCT---GTGGGTCGCCTAA-GGG-----C-TCCAGCGA--TTCCA-GGGCAA-CGCCCTGG--TGGTG-GTATG--TCAGAGGGG----CA-AT-GCCC-------------CCCCCCCTCCGAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGCACATG--TAATG-C-AC-AAAATGTT---G--GGT--CTC-C-ATA-ATGAAATTTCG----TTAGAAG-A-G-----AGAGAA---A-A----TGTACA-----A------------T-TTTA--CAA---------TTG-----T-AAGAT-T-TTATAA------------AT-------------GATCAAATTAAATGAC-GA----AAAAATGT--------------------GCAAGCAACTTATGCATTTTTTTTTTTTCAGAAAAAA-AATAA-ATATAA--A----T----CCTCT---GATGGAAAGCCATTA----AAAAACCCCAAACAAT--TTTAAT--GCTGA-T--TATTTGGGG-GGAATT-----TTTATTAGG-----TATTTTG-A-TCTTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT----GTATC--AGACAAC--CAT-TATT-CAA--TGGA-AT------ATT---GTCAA-T--TAGAGGTCTGAAAGCG-AGAAAAGATACA-AG--AT---AGGAGAT-GCA-AGTGC-GGGG-TGCTTG-AGAAGTTTT-CTCAGG-AGT-GTCGT--GGGAAGGTGGGAG-TTGTTT--GCG-AGGGCGGGG---TTGTTTGCG--AGTCGTGAATGATTGTC-TA--ATTGTCTTG-AATGATCAAA---GTTT-C-TGA-GTCAGAGAG---ATG-----AATTAAGAGTTCACA-------TGTCGGTCT-AAAGGGGAGGCGTaaaaattgctt
gi|5 : G--TA--GCTAGGGCCTTTAGGATGT--TAGGCACC-AAATT-AA-GGC-GGATGGGTCT---GTGGGTCGCA-AAAGGG-----T-TCCAGCGA--G-TCA-AGGCAAACGCCCGGGAGTGG-GAG---G--TCTGAGGGG----CA-AATGCCCG------------CCC-------GAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATA---------AT-----------TTTCT----------CTA-GGCACATG--TAATAGCAACAAAAATTTT---G--GGTTCTTC-C-TTA-ATGATATTTCG-T--TAAGAAGAA-G-----GGAGAAGGGA-A----GAAAAA-----A------------T-GTTA--TAA---------TT------CAAATAT-C-TTTTAA------------
gi|5 : AAAAAA-AA-AA-ATGCCA--CCTGCT----CCTCT---GACGAAAAGCCATTA----AAAAACCTC---CATT--TTTAAAATGCTGA-T--TATTTGGGG-GAGG-T-----GAT--TGGG-----TATTTTG-A-T-TTGAATGCCA-TAATTCA-GAAAAAGGGTTTCGA--ACT----ATTTG--AG--AACACCAT-TATT-CAA--TGGA-ATTGAATAATTATAGTTAA-TATTAGAGGCTTG---T-A-AGAGAAGATACA-AGTGAG---AGGAGATTGCA-GGTGC-GGGG-TGCATGTAGCTGTTTTCCCCAAGTAGTCGCCGTTGGGA-AGGTGGGAG-TTGTTT--GCGGAGGGC-GGGGGTTTGTTTGCTTTAGTCGTGAATGATTTTCTAC--ATTGTTTTGAAATGATCAAA---GTTTTC-TGA-GTCAGAGAG---A---------------GTTCATAGCAACACTATCGGTCTTAAAGGGGAGGCGTcagcagaatgcctctcctgaagattaaaaaaaaaaaatgccacctgctcctctgacgaaaagccattaaaaaacctccatttttaaaatgctgattatttgggggaggtgattgggtattttgatttgaatgccataattcagaaaaagggtttcgaactatttgagaacaccattattcaatggaattgaataattatagttaatattagaggcttgtaagagaagatacaagtgagaggagattgcaggtgcggggtgcatgtagctgttttccccaagtagtcgccgttgggaaggtgggagttgtttgcggagggcgggggtttgtttgctttagtcgtgaatgattttctacattgttttgaaatgatcaaagttttctgagtcagagagagttcatagcaacactatcggtcttaaaggggaggcgt
gi|6 : gtagctagggcctttaggatgttaggcaccaaattaaggcggatgggtctgtgggtcgcaaaagggttccagcgagtcaaggcaaacgcccgggagtgggaggtctgaggggcaaatgcccgcccgatggaaaacatatttcgtgtttttgagataattttctctaggcacatgtaatagcaacaaaaattttgggttcttccttaatgatatttcgttaagaagaagggagaagggaagaaaaaatgttataattcaaatatcttttaacagcagaatgcctctcctgaagattaGTGG-CG--TA--TCTAGGATCTTGAGGATGTAGTAGACACC-AAA-T-AA-GGC-G-AGGG-TC----GGGGGCCGCC-CA-AGA-----C-CCCAGTGG--T-CCA-GGGTAG-CATCCTTG--AGG-G-G---G---G-GGGGGG----CACA--GCGC-------------CTC--------AC----GG-AAACAGATTTTCGTGTT--TTG------A---A----GATC---------ACTTGGGAACAAAT---T----------CTATGGAACATG--TAATA-C-A--AAAATTTT---GAAAAT--CTC-T-CTA-ATACAATTTCG-G--TGACTAG-A-GCAAAAAAAAAA---A-A----TAAATA-----A----------------TA--CAA-----------------T-AA--------ATAA------------AT-------------AA--AGA-TAAATAA---A----AAAAAAGT--------------------AC
gi|7 : attcaaacacacatgtagtcaatttcaacacaagccctatttatcccaaaacggcttgaaatctcacgctggtgtcactatcaaaattactcatcaacattcaaagtggttgtatatgtaagagctctttgttcatctaaactatttgaaattagggcgcaaccccgttttacaatcatgcttgcataccccccccaaaaatcccctaaaaaaagagggaaagacaaaaaatacaccaacagttcgtatcattgttttgaggttttcctccagaatactacataaaagtatattaaaagaaaacacaaaacatgccagattaatgtccgttaacaGTGGTCG--TA--GATAGGACTTTGA---AGTA-TAGGCACA-AAT-T-AA-GGC-G-AGGGATCC---GGGGGGAG-G-GA-GGT-----C-GCCCAAGG--T-CCA-GGACAG-CGCCCTGG--TGG-A-----------GAGTTG----CC-A--CCCCCCCCCCCCCCCCTCCC-------GGCACAAAGAGAACAGA-TTTCATTTT--TTT------GACTA----CATCTTCTTGGGAACTAAA-------T---T----------CTACGGCACATG--TACTA-T-AC-AAAAGTTTAACG--GCT--CTCAT-TTA-ATAAAATTTCG----TTAGTAG-A-A-----GGACAA---A-AGAGGGGAACA-----ATCCGACTGT---T-TTTA--CCAGAGGTC---TTTCTTGAT-AATATATATTTTAATATTTTTTCAGCGT-------------AATCAAATCAAATGACGGA----AAAAATGTATTTTTAAAAAATCAAACAAACAAAAACA--ATGCA-TATTTTTCTTCCgttccaatttgtt
gi|7 : AAA--GCAGG-T--TATCCGGGA-AAAA-A-----TTT----GG-----TATTCTG-A-TACTGAATGCCA-TAATGCA-tatggtggaaagcaggttatccgggaaaaaatttggtattctgatactgaatgccataatgca
gi|8 : gtggtcgtagataggactttgaagtataggcacaaattaaggcgagggatccggggggagggaggtcgcccaaggtccaggacagcgccctggtggagagttgccacccccccccccccccctcccggcacaaagagaacagatttcatttttttgactacatcttcttgggaactaaattctacggcacatgtactatacaaaagtttaacggctctcatttaataaaatttcgttagtagaaggacaaaagaggggaacaatccgactgtttttaccagaggtctttcttgataatatatattttaatattttttcagcgtaatcaaatcaaatgacggaaaaaatgtatttttaaaaaatcaaacaaacaaaaacaatgcatatttttcttcctatggtggA--ACACATCTACTATTTTTCAAAAAGAACAA-AATATGCAA--A----A----CTGCTCGAGGTGGACAGACATTACTTTACACACAC---ATAGTGCTTTAGA--GCTGCCT--TCTATGTGGTGGAA-T-----TTTA-TTGA------ATTTTGCACTCTCGA--GCAAATAGATCG-GAAAA--TGTT-CGATTAAT-----TAC----G--AAC--CATCTATTGCAACTTGGATAT------AT----GTCAAAT--TAGTTGCTTGAAAA-A-TATGTAACTACATAG--AT----GGA-AT-GCATGGTGCCGGGGCTGCTTG-AAC--TTTTCCCGAGGTAGT-GT-GT--GGGCAGGTGGGAGTTTATTTTGGCA-GGAGCTGGG---TTGTT--CT--AG-----------TTCT-AC--ATTGTTTTGAAATGA-CAAATAGGTCG-C-TCA-G---GAGAG---ATT-----AAGTAAGAGTTCA-A-------TATCTGCGT-AA--GGGCGGCGT
gi|9 : aatataatcGGTGAT-GCA-GGTGC-GGGG-TGCTGA-AGCTGTTCTCCT-AGG-AGT-GTCG----------TGGAAG-TT---T--GCG--------------TGTT----------GTGAATGATTTCT-G---ATTGTTTTG-AATGGTCAAG---GTGT-CTTGA-GTCAGAGAA---ATGA----AAGTAAGACTTCAGA-------TACAGGACT-AAAGGGAAAGC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTCAAATGATGAGAAGATGTCATACGATATGAAAGCTGGGTTATGAATATTAGGCCTGTCCTTTACAAAGTGTTCCTCTATTAGACTATATCATGCTGACTATGATGGAAGTTCTTTTCTGAGGGACTGCCGCAGACAACCTTAAGTTCGAGAGAAACACCTAGGTCAATTCAACACGAAGCCTATTTCATAAAAAAACGGCTTGAAATCTACGCTATACAAGTACATGTCACTAGTCAACACTTACTCCTATATCACATTCACAGCGGCTGTATATTGTA
Unaligned ( gi|12 ): AAGATGAAATGTAACGTATAATATGCATATAATATAGGTTCCTTTAACATATCTATACTCATGCGTGTTTTTTATTTTAATTTTAGCTATGAAGTAGTGGTTGTGTATAATGAATTTAAAAGCTAGTTTTTGGTCAATTTTCCAATATGAGGCCTATTTCATAAAAAACAGCTTGGGAATGTACACAGTATACATTTCACCTAGTCAGCAT
Unaligned ( gi|13 ): GTTCTCGCGAGTGTCGTGGACGTTAGTTGCGATTGTGAAAGATTGTGATTGTTTGAATGCGCATGTCTGAGTATACAGTAGACTAATAGGAAAGAGTTGGACCATGGACACGCGTGATTTATATCTTGTTAGCATTCATCTTTATATCAAAGATCTGGTATTGTAAGTTTTTCTTGTAACATTAGTGTGCA
Unaligned ( gi|14 ): TATATTTTGTCAGCATCAACGATAAAAAGGCGAAAAAAATCTGGTATTTTATCACACTTTAATTTTTTTCTCTGTTTTATTTTCATTTTTTGGGGGGTAAAAACTATGTGTAGTGCCTAATGGCAGCTACGCCACTGA
Unaligned ( gi|15 ): GTTGACATTGCGTCACGGTCGGGTTTATATCTTGTTAGCATCAATGACTTTTGATAAGCGTAAATTTAATATTCTATTTTTTTTATTGGTAAAATTGACATGAAGGCA
Unaligned ( gi|17 ): AATGACTTTCAATAACCGAAAATATGGTATTTTATAATATGAAAATTATGTGTAGGCACGTGCCTTAAGTGCCTAATGGCAGCTACGTCACTG
Unaligned ( gi|20 ): TATTTTATTGAAAATTATATTGTAGGCACATGCCTACTCAAGGCCTAACGACGCTACGCCCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 11 11 11111111 1111 11111 3333333333333 55555555555555555555555555555555555555555555 111111111111111 5555555555555555555555555555555555555 1 111 1 111111 2222 111 11111111111111111111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 11 1 2222222222 111 5555555555555555555555555 1111111 44444444444444444444444444 444444444444444444444444 3333333 1 1 11 1 333333333333 1111 1111 11111 2222 1 1 222222 1111111111111111111111111111111111 111 22222 1 111 111 22222 2222222 1
lowQualScore : 4 11 55 1 7 4 77 8 4 4 4 777 99 5 5 55555555 4 3333 5 5 0 11111 2222222222222 66666666666666666666666666666666666666666666 2 5 66 888888888888888 9999999999999999999999999999999999999 0 1 66 0 444 0 3 000000 77 5 55 0 6 0000 1 222 1 88888888888888888888888 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 2 3 1 11 1 1 1 9999999999 6 6 222 1 3333333333333333333333333 9999999 0 55555555555555555555555555 77 5 77 0 5 000000000000000000000000 5 5 7 5 5 99 0 3 5555555 1 2 55 0 0 33 0 111111111111 4444 3 5555 88888 0000 8 8 8 6 6 6 0 3 6 777777 3 6 0000000000000000000000000000000000 000 00000 5 111 6 1 6 6 111 33333 8 6666666 1 0 3
lowQualScore : . .. .. . . . .. . . . . ... .. . . ........ . .... . . . ..... ............. ............................................ . . .. ............... ..................................... . . .. . ... . . ...... .. . .. . . .... . ... . ....................... ......................................................................................................................... .. . . . .. . . . .......... . . ... . ......................... ....... . .......................... .. . .. . . ........................ . . . . . .. . . ....... . . .. . . .. . ............ .... . .... ..... .... . . . . . . . . . ...... . . .................................. ... ..... . ... . . . . ... ..... . ....... . . .
lowQualScore : 4 00 55 3 3 0 55 0 0 0 0 000 66 7 7 99999999 0 9999 0 0 2 00000 1111111111111 66666666666666666666666666666666666666666666 5 0 99 666666666666666 5555555555555555555555555555555555555 0 0 99 2 555 0 2 888888 99 7 99 4 7 8888 0 555 0 00000000000000000000000 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 00 8 8 0 44 0 4 4 2222222222 7 7 555 0 8888888888888888888888888 2222222 6 11111111111111111111111111 99 7 99 1 7 777777777777777777777777 7 7 0 7 7 22 8 2 8888888 0 5 55 0 0 88 0 555555555555 8888 2 0000 00000 8888 0 0 0 7 7 7 8 3 7 000000 2 7 8888888888888888888888888888888888 777 22222 5 777 7 0 7 7 777 33333 6 0000000 2 0 2
consensus : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-CTT-AATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----AT------------NTTA--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA--ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAG-TTGTTT--GC-GAGGGC-GGG---TTGTTT-C---AGTCGTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
Reference ( family-807 ) : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-CTT-AATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----AT------------TTTA--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACAAAAAAA--ACGCATTTTTTTTTTTCCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACAAT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAG-TTGTTT--GC-GAGGGC-GGG---TTGTTCGC---AGTCGTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
gi|1 : GG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---GGG
gi|1 : GG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---GGTTC-GTGGGGGAACTA-A--GCCC-------------CCC-------GAC----AAAAAACAGA-TTTAATGTT--TTT------G---A----GATC---------AC-----------T---TGGGAACAATTCTA-GGCACGTG--TATTA-C-AC-AAA-TTTC---A--GGT--CTC-TT-----GAAATCTC-GATCGTTAGTAG-AAGGGAAAA---ATA----TGTA--CA-----ATCCATTGAATTCTTTTAACCAGAGGTCTTTCTTACT------AAG-AT-TTTCTATA--TTTATTTTCAGCGTAAT-CAAA--TTAT-AT------GACG-----AGGAAAA--AAATTTCAATAAAAAAA--ATGCATTTTTTTTATTCCAGAAAA----------AA-AA-A----TGCAACA--A-------TGCCTCCTTT---GGTAAAAAGCCAT------AAAAATCC------AT--TTA-------------AAA--GCTGA-T--TATT-GGGG-GG---------------TGGGGGTGCTATTTTG-A-TATTGAATGTCA-TAATTCA-GAAAA--GGTTTCGATTAATTATAATATATCAGACAACCTT-TATT-CAA--GTGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-AGAGAAAAGATAC--A--GATATAAGGAGT-TGCA-GGTGA-GGGA--GATTG-AACTGTTTT-CCCAGG-AGT-GTCGT------ACGTGGGAG-TTGT--------------GGA---T-----------------AAT---TTTCTGCCGATTGTTTTG-AATGGTCAAA---G-TGTC-TGAGGTCA-AGAGCACATGAATTAAAGTAAGAGTTCATA-------TATtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaggtccagggcagcgccctggtggggggttcgtgggggaactaagccccccgacaaaaaacagatttaatgtttttgagatcacttgggaacaattctaggcacgtgtattacacaaatttcaggtctcttgaaatctcgatcgttagtagaagggaaaaatatgtacaatccattgaattcttttaaccagaggtctttcttactaagattttctatatttattttcagcgtaatcaaattatatgacgaggaaaaaaatttcaataaaaaaaatgcattttttttattccagaaaaaaaaatgcaacaatgcctcctttggtaaaaagccataaaaatccatttaaaagctgattattggggggtgggggtgctattttgatattgaatgtcataattcagaaaaggtttcgattaattataatatatcagacaacctttattcaagtgaatattgtcaattagaggcttgaaagagagaaaagatacagatataaggagttgcaggtgagggagattgaactgttttcccaggagtgtcgtacgtgggagttgtggataattttctgccgattgttttgaatggtcaaagtgtctgaggtcaagagcacatgaattaaagtaagagttcatatatataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|11 : ggcggttagctagggccttgggaagtataggcaccaatcaaggcgaggtgtctgggtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaGTGG-CG--TA--GCTAAGACATTGAGGATGTA-TAGGCACC-AA--T-AAAGGC-G-ACGGGTATATAGGGAGC-GCC-AA-AGG-----CCTCCAGTGG-----------------------------------G--TC-CAGGGG----CA----GC--------------------------A-----GGAAAACAGA-TTTTGTATT--TTT------G---A----GATC---------AC-----------T---T------------G-GGGACA--------A---AC-TAG--TTT---G--GGT--CTC-CTTTAATAAAATTTC-G----AGAGTAG---GCAAAAA---A-A----AGTA--CATGTGTATG-----------TTGA--TGA----------T--T------AAG-AT-TTTataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|16 : caGG-TGCTGG-AACTGTTCTCCC-AGG-AAT-GTCG-------AGG---GAG-TTACTC--GT-GAG-----------------------CTATGAATGG-TCTCCG---ATTGTTTTGAA-TGATCAAA---G-TGTC-TGA-GTCAGAGAG---ATG-----Aa
gi|18 : tgcaGTGG-CG--TATAACTGGGATCTTGAGGAAGTA-TATACACCAAA--T-AA-GGT-G-AGGGTTCT---GGG
gi|19 : aaaacaaaacatgccagattatattgttaacaAA--GCTGA-T--TATTTTGGT-GAAATGAGGTT---T--TGG------TATTTTG-A-TGTTGAATACAA-AAATTCATAAAAA--AGTTTTG
gi|2 : tttaaacagGTGG-TT--TA--ACTGGGATCTT-AGGAAGTA-TAT-CACC-AA--T-AC-GGT-A----GGTTC---GGGGG--GCC-AA-GTGAAAACC-T-----GG--T-CCAAGGGCAG-CGAC-TGA---GG-G-G---G-----GATGGG----CA----GCCC-------------CC---------AC----GGAAAACA-A-TTTCGTGTTTGTTT------G---AATTGGAT----------AA-----------T---T----------CTA-TGAACATGTATAATA---ACAAAAATTTT---T--AAT--TTT-CTC-ATTTAAA
gi|21 : tcaaatatgaaatgtaacacacatgtatgcatataatattaggtgtcctttacaattaagagttccttatttatatatatccatgcgtgttatgattgaataaatgaaatcaaacagctagtcaatttcaacacgaagcctatttcatcaaatacgctgtactacaagtacatgtcactatatatagtcaacacttacatcacattcacagcggccggcatgtatatactgtatagactttgtatctacaactatttatgaagattagggcgaaaaacccattttactaactcatgcatgataccccccccccctaagaaaacagaaacaaacataaaataaaaaggcaccacatggaaaaaaaagcaaacccaaaaaaattaagcacaatcaatcattcatcttattgtgaggttcttttctctacgtctactattaattaagatctaacagagaaccaaaacatgcagtatagttaacaTGG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---agaccataatatacaataaacagataagaatttgaagaaagtacagttccaatttgtttccaaaagtcttttttttttttaacaaagatttttaatatcttcagctaaacgaaatttctgaaagagctgtatcttctgggtgagatatttttacatttaattcatgttcagaaaaaagacattgct
gi|22 : GTGG-CG--TA--GCTAGGGCCTTGGGGAAGTAGTAG
gi|3 : caGGATCTTAAGGAAGT--TAGACACC-AAA-T-AA-GGTTG-AGGGGTCT---GGGGGCCGCC-AA-GAA-----C--CCAGTGGGTC-CCA-GGGCAG-CATCCT----TGG-G-G---G--AC-GCGGGG----------GACC-------------CCC--------AC----GGAAAACAGA-TT-CGTGTT--TTTAGACTTG---G----GA-C---------AA-----------A---T----------CTA-TGAACATG--TAATA-C-AC-AAAATTTT---G--
gi|3 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatct-------------AAA--GCTGA-TAATATTTGGGG-GG--------T---T--GGGG-----TATTTTT-A-TATTTAATGTCA-TGATTCA-GAAAA--aaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaaaagctgataatatttggggggttggggtatttttatatttaatgtcatgattcagaaaaaaaaattgctt
gi|4 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctggatcttaaggaagttagacaccaaataaggttgaggggtctgggggccgccaagaacccagtgggtcccagggcagcatccttgggggacgcgggggacccccacggaaaacagattcgtgtttttagacttgggacaaatctatgaacatgtaatacacaaaattttgaaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaGTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-ATGGGTCT---GTGGGTCGCCTAA-GGG-----C-TCCAGCGA--TTCCA-GGGCAA-CGCCCTGG--TGGTG-GTATG--TCAGAGGGG----CA-AT-GCCC-------------CCCCCCCTCCGAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGCACATG--TAATG-C-AC-AAAATGTT---G--GGT--CTC-CAT-AATGAAATTTC-G----TTAGAAG-A-GAGAGAA---A-A----TGTA--CA-----AT------------TTTA--CAA---------TTG-T------AAG-AT-TTTATAAA--T-------------GAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--GCAAGCAACTTATGCATTTTTTTTTTTTCAGAAAA----------AA-AATA-A-ATATAA----A-------T----CCTCT---GATGGAAAGCCATTA----AAAAACCCCAAACAAT--TTT-------------AAT--GCTGA-T--TATTTGGGG-GGAAT----TTTTAT--TAGG-----TATTTTG-A-TCTTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------GTATCAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGTCTGAAAGCG-AGAAAAGATACA-A--GAT---AGGAGA-TGCA-AGTGC-GGGG-TGCTTG-AGAAGTTTT-CTCAGG-AGT-GTCGT--GGGAAGGTGGGAG-TTGTTT--GC-GAGGGCGGGG---TTGTTTGCG--AGTCGTGAATGA-TTGTCTA--ATTGTCTTG-AATGATCAAA---G-TTTC-TGA-GTCAGAGAG---ATG-----AATTAAGAGTTCACA-------TGTCGGTC-TAAAGGGGAGGCGTaaaaattgctt
gi|5 : G--TA--GCTAGGGCCTTTAGGATGT--TAGGCACC-AAATT-AA-GGC-GGATGGGTCT---GTGGGTCGCA-AAAGGG-----T-TCCAGCGA--G-TCA-AGGCAAACGCCCGGGAGTGG-GAG---G--TCTGAGGGG----CA-AATGCCCG------------CCC-------GAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATA---------AT-----------TTTCT----------CTA-GGCACATG--TAATAGCAACAAAAATTTT---G--GGTTCTTC-CTT-AATGATATTTC-GT---TAAGAAGAA-GGGAGAAGGGA-A----GAAA--AA-----AT------------GTTA--TAA---------TT--C------AAATAT-CTTTTAA
gi|5 : AAAA----------AA-AA-A-A-ATGCCACCTGC-------T----CCTCT---GACGAAAAGCCATTA----AAAAACCTC---CATT--TTT-------------AAAATGCTGA-T--TATTTGGGG-GAGGT----GA---T--TGGG-----TATTTTG-A-T-TTGAATGCCA-TAATTCA-GAAAAAGGGTTTCGA--ACT------ATTTGAGAACACCAT-TATT-CAA--TGGA-ATTGAATAATTATAGTTAATA-TTAGAGGCTTG---T-A-AGAGAAGATACA-AGTGAG---AGGAGATTGCA-GGTGC-GGGG-TGCATGTAGCTGTTTTCCCCAAGTAGTCGCCGTTGGGA-AGGTGGGAG-TTGTTT--GCGGAGGGC-GGGGGTTTGTTTGCTTTAGTCGTGAATGATTTTCTAC--ATTGTTTTGAAATGATCAAA---GTTTTC-TGA-GTCAGAG------------------AGAGTTCATAGCAACACTATCGGTCTTAAAGGGGAGGCGTcagcagaatgcctctcctgaagattaaaaaaaaaaaatgccacctgctcctctgacgaaaagccattaaaaaacctccatttttaaaatgctgattatttgggggaggtgattgggtattttgatttgaatgccataattcagaaaaagggtttcgaactatttgagaacaccattattcaatggaattgaataattatagttaatattagaggcttgtaagagaagatacaagtgagaggagattgcaggtgcggggtgcatgtagctgttttccccaagtagtcgccgttgggaaggtgggagttgtttgcggagggcgggggtttgtttgctttagtcgtgaatgattttctacattgttttgaaatgatcaaagttttctgagtcagagagagttcatagcaacactatcggtcttaaaggggaggcgt
gi|6 : gtagctagggcctttaggatgttaggcaccaaattaaggcggatgggtctgtgggtcgcaaaagggttccagcgagtcaaggcaaacgcccgggagtgggaggtctgaggggcaaatgcccgcccgatggaaaacatatttcgtgtttttgagataattttctctaggcacatgtaatagcaacaaaaattttgggttcttccttaatgatatttcgttaagaagaagggagaagggaagaaaaaatgttataattcaaatatcttttaacagcagaatgcctctcctgaagattaGTGG-CG--TA--TCTAGGATCTTGAGGATGTAGTAGACACC-AAA-T-AA-GGC-G-AGGG-TC----GGGGGCCGCC-CA-AGA-----C-CCCAGTGG--T-CCA-GGGTAG-CATCCTTG--AGG-G-G---G---G-GGGGGG----CACA--GCGC-------------CTC--------AC----GG-AAACAGATTTTCGTGTT--TTG------A---A----GATC---------ACTTGGGAACAAAT---T----------CTATGGAACATG--TAATA-C-A--AAAATTTT---GAAAAT--CTC-TCT-AATACAATTTCGG----TGACTAG-A-GCAAAAA---A-A----AAAAATAA-----AT------------AATA--CAA-------------T------AA--------ATAAA--T-------------AA---AGA---TAA-AT------AA-------A----AA--AAAAGT--AC
gi|7 : attcaaacacacatgtagtcaatttcaacacaagccctatttatcccaaaacggcttgaaatctcacgctggtgtcactatcaaaattactcatcaacattcaaagtggttgtatatgtaagagctctttgttcatctaaactatttgaaattagggcgcaaccccgttttacaatcatgcttgcataccccccccaaaaatcccctaaaaaaagagggaaagacaaaaaatacaccaacagttcgtatcattgttttgaggttttcctccagaatactacataaaagtatattaaaagaaaacacaaaacatgccagattaatgtccgttaacaGTGGTCG--TA--GATAGGACTTTGA---AGTA-TAGGCACA-AAT-T-AA-GGC-G-AGGGATCC---GGGGGGAG-G-GA-GGT-----C-GCCCAAGG--T-CCA-GGACAG-CGCCCTGG--TGG-A-----------GAGTTG----CC-A--CCCCCCCCCCCCCCCCTCCC-------GGCACAAAGAGAACAGA-TTTCATTTT--TTT------GACTA----CATCTTCTTGGGAACTAAA-------T---T----------CTACGGCACATG--TACTA-T-AC-AAAAGTTTAACG--GCT--CTCATTT-AATAAAATTTC-G----TTAGTAG-A-AGGACAA---A-AGAGGGGAA--CA-----AT------------CCGA--CTG---------TT--TTTACCAGAG-GTCTTTCTTGA--T-------------AATATATATTTTAATATTTTTTCAGCGTAATCA----AATCAAATG---ACGGAAAAA--ATGTATTTTT--------AAAAAATCAAACAAACAA-AA-ACA-ATGCAT----ATTTTTCTT----CCTAT---GGTGGAAAGCgttccaatttgtt
gi|7 : TA--TAT---------TT--T------AAT-AT-TTTTTCAGCGT-------------AAT-CAAA--TCAA-AT------G-------------------------ACGGAAAAA--ATGTAT------TTTT-------------------A-AA-A-A-AT-CAA----A-------C-----------------AAA--CA--A----AAACAATGC--ATATT--TTTCTTCCTATGGTGGAAA--GCAGG-T--TATCCGGGA-AAAAA----TT---T----GG-----TATTCTG-A-TACTGAATGCCA-TAATGCA-aggttatccgggaaaaaatttggtattctgatactgaatgccataatgca
gi|8 : gtggtcgtagataggactttgaagtataggcacaaattaaggcgagggatccggggggagggaggtcgcccaaggtccaggacagcgccctggtggagagttgccacccccccccccccccctcccggcacaaagagaacagatttcatttttttgactacatcttcttgggaactaaattctacggcacatgtactatacaaaagtttaacggctctcatttaataaaatttcgttagtagaaggacaaaagaggggaacaatccgactgtttttaccagaggtctttcttgataataA--ACACATCTACTATTTTTCAAAAAG----------AACAA-A-ATATGCAA----A-------A----CTGCTCGAGGTGGACAGACATTACTTTACACACAC---ATAGTGCTTT-------------AGA--GCTGCCT--TCTATGTGGTGGAAT----TT---TATTGA-------ATTTTGCACTCTCGA--GCAAATAGATCG-GAAAA--TGTT-CGATTAAT-------TACGA----ACCATCTATTGCAACTTGGATAT------AT----GTCA--AATTAGTTGCTTGAAAA-A-TATGTAACTACATA--GAT----GGA-A-TGCATGGTGCCGGGGCTGCTTG-AACT--TTTCCCGAGGTAGT-GT-GT--GGGCAGGTGGGAGTTTATTTTGGC-AGGAGCTGGG---TTGTTC-T---AG------------TTCTAC--ATTGTTTTGAAATGA-CAAATAGG-TCGC-TCA-G---GAGAG---ATT-----AAGTAAGAGTTCA-A-------TATCTGCG-TAA--GGGCGGCGT
gi|9 : aatataatcGGTGA-TGCA-GGTGC-GGGG-TGCTGA-AGCTGTTCTCCT-AGG-AGT-GTCGT--GGA-AG-----------TTT--GC-G-------------TGTT----------GTGAATGA-TTTCTG---ATTGTTTTG-AATGGTCAAG---G-TGTCTTGA-GTCAGAGAA---ATGA----AAGTAAGACTTCAGA-------TACAGGAC-TAAAGGGAAAGC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTCAAATGATGAGAAGATGTCATACGATATGAAAGCTGGGTTATGAATATTAGGCCTGTCCTTTACAAAGTGTTCCTCTATTAGACTATATCATGCTGACTATGATGGAAGTTCTTTTCTGAGGGACTGCCGCAGACAACCTTAAGTTCGAGAGAAACACCTAGGTCAATTCAACACGAAGCCTATTTCATAAAAAAACGGCTTGAAATCTACGCTATACAAGTACATGTCACTAGTCAACACTTACTCCTATATCACATTCACAGCGGCTGTATATTGTA
Unaligned ( gi|12 ): AAGATGAAATGTAACGTATAATATGCATATAATATAGGTTCCTTTAACATATCTATACTCATGCGTGTTTTTTATTTTAATTTTAGCTATGAAGTAGTGGTTGTGTATAATGAATTTAAAAGCTAGTTTTTGGTCAATTTTCCAATATGAGGCCTATTTCATAAAAAACAGCTTGGGAATGTACACAGTATACATTTCACCTAGTCAGCAT
Unaligned ( gi|13 ): GTTCTCGCGAGTGTCGTGGACGTTAGTTGCGATTGTGAAAGATTGTGATTGTTTGAATGCGCATGTCTGAGTATACAGTAGACTAATAGGAAAGAGTTGGACCATGGACACGCGTGATTTATATCTTGTTAGCATTCATCTTTATATCAAAGATCTGGTATTGTAAGTTTTTCTTGTAACATTAGTGTGCA
Unaligned ( gi|14 ): TATATTTTGTCAGCATCAACGATAAAAAGGCGAAAAAAATCTGGTATTTTATCACACTTTAATTTTTTTCTCTGTTTTATTTTCATTTTTTGGGGGGTAAAAACTATGTGTAGTGCCTAATGGCAGCTACGCCACTGA
Unaligned ( gi|15 ): GTTGACATTGCGTCACGGTCGGGTTTATATCTTGTTAGCATCAATGACTTTTGATAAGCGTAAATTTAATATTCTATTTTTTTTATTGGTAAAATTGACATGAAGGCA
Unaligned ( gi|17 ): AATGACTTTCAATAACCGAAAATATGGTATTTTATAATATGAAAATTATGTGTAGGCACGTGCCTTAAGTGCCTAATGGCAGCTACGTCACTG
Unaligned ( gi|20 ): TATTTTATTGAAAATTATATTGTAGGCACATGCCTACTCAAGGCCTAACGACGCTACGCCCT
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 11 11 11111111 1111 11111 3333333333333 55555555555555555555555555555555555555555555 111111111111111 5555555555555555555555555555555555555 1 111 1 111111 2222 111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 333333333333333333333333 111 5555555555555555555555555 1111111 44444444444444444444444444 444444444444444444444444 3333333 1 1 11 1 333333333333 1111 1111 11111 2222 1 1 222222 000000000000000000000000000000000000 111 22222 1 111 111 22222 2222222 1
lowQualScore : 4 11 55 1 7 4 77 8 4 4 4 777 99 5 5 55555555 4 3333 5 5 0 11111 2222222222222 66666666666666666666666666666666666666666666 2 5 66 888888888888888 9999999999999999999999999999999999999 0 1 66 0 444 0 3 000000 77 5 55 0 6 0000 1 222 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 666666666666666666666666 6 6 222 1 3333333333333333333333333 9999999 0 11111111111111111111111111 77 5 77 0 5 000000000000000000000000 5 5 7 5 5 99 0 3 5555555 1 2 55 0 0 33 0 111111111111 4444 3 5555 88888 0000 8 8 8 6 6 6 0 3 6 777777 3 6 333333333333333333333333333333333333 000 00000 5 111 6 1 6 6 111 33333 8 6666666 1 0 3
lowQualScore : . .. .. . . . .. . . . . ... .. . . ........ . .... . . . ..... ............. ............................................ . . .. ............... ..................................... . . .. . ... . . ...... .. . .. . . .... . ... . ...................................................................................................................................................... ... ........................ . . ... . ......................... ....... . .......................... .. . .. . . ........................ . . . . . .. . . ....... . . .. . . .. . ............ .... . .... ..... .... . . . . . . . . . ...... . . .................................... ... ..... . ... . . . . ... ..... . ....... . . .
lowQualScore : 4 00 55 3 3 0 55 0 0 0 0 000 66 7 7 99999999 0 9999 0 0 2 00000 1111111111111 66666666666666666666666666666666666666666666 5 0 99 666666666666666 5555555555555555555555555555555555555 0 0 99 2 555 0 2 888888 99 7 99 4 7 8888 0 555 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000 555555555555555555555555 7 7 555 0 8888888888888888888888888 2222222 6 77777777777777777777777777 99 7 99 1 7 777777777777777777777777 7 7 0 7 7 22 8 2 8888888 0 5 55 0 0 88 0 555555555555 8888 2 0000 00000 8888 0 0 0 7 7 7 8 3 7 000000 2 7 888888888888888888888888888888888888 777 22222 5 777 7 0 7 7 777 33333 6 0000000 2 0 2
consensus : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-CTT-AATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTTT-T-AGTCGTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
Reference ( family-807 ) : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-CTT-AATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTTT-C-AGTCGTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
gi|1 : GG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---GGG
gi|1 : GG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---GGTTC-GTGGGGGAACTA-A--GCCC-------------CCC-------GAC----AAAAAACAGA-TTTAATGTT--TTT------G---A----GATC---------AC-----------T---TGGGAACAATTCTA-GGCACGTG--TATTA-C-AC-AAA-TTTC---A--GGT--CTC-TT-----GAAATCTC-GATCGTTAGTAG-AAGGGAAAA---ATA----TGTA--CA-----ATCCATTGAATTCTTTT-AACCAGAGGTCTTTCTTACT------AAG-AT-TTTCTATA--TTTATTTTCAGCGTAAT-CAAA--TTAT-AT------GACG-----AGGAAAA--AAATTTCAATAAAAAAA---ATGCATTTTTTTTATTCCAGAAAA----------AA-AA-A----TGCAACA--A-------TGCCTCCTTT---GGTAAAAAGCCAT------AAAAATCC------AT--TTA-------------AAA--GCTGA-T--TATT-GGGG-GG---------------TGGGGGTGCTATTTTG-A-TATTGAATGTCA-TAATTCA-GAAAA--GGTTTCGATTAATTATAATATATCAGACAACCTT-TATT-CAA--GTGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-AGAGAAAAGATAC--A--GATATAAGGAGT-TGCA-GGTGA-GGGA--GATTG-AACTGTTTT-CCCAGG-AGT-GTCGT------ACGTGGGAGTT-GT--------------GGA-------T---------------AAT---TTTCTGCCGATTGTTTTG-AATGGTCAAA---G-TGTC-TGAGGTCA-AGAGCACATGAATTAAAGTAAGAGTTCATA-------TATtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaggtccagggcagcgccctggtggggggttcgtgggggaactaagccccccgacaaaaaacagatttaatgtttttgagatcacttgggaacaattctaggcacgtgtattacacaaatttcaggtctcttgaaatctcgatcgttagtagaagggaaaaatatgtacaatccattgaattcttttaaccagaggtctttcttactaagattttctatatttattttcagcgtaatcaaattatatgacgaggaaaaaaatttcaataaaaaaaatgcattttttttattccagaaaaaaaaatgcaacaatgcctcctttggtaaaaagccataaaaatccatttaaaagctgattattggggggtgggggtgctattttgatattgaatgtcataattcagaaaaggtttcgattaattataatatatcagacaacctttattcaagtgaatattgtcaattagaggcttgaaagagagaaaagatacagatataaggagttgcaggtgagggagattgaactgttttcccaggagtgtcgtacgtgggagttgtggataattttctgccgattgttttgaatggtcaaagtgtctgaggtcaagagcacatgaattaaagtaagagttcatatatataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|11 : ggcggttagctagggccttgggaagtataggcaccaatcaaggcgaggtgtctgggtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaGTGG-CG--TA--GCTAAGACATTGAGGATGTA-TAGGCACC-AA--T-AAAGGC-G-ACGGGTATATAGGGAGC-GCC-AA-AGG-----CCTCCAGTGG-----------------------------------G--TC-CAGGGG----CA----GC--------------------------A-----GGAAAACAGA-TTTTGTATT--TTT------G---A----GATC---------AC-----------T---T------------G-GGGACA--------A---AC-TAG--TTT---G--GGT--CTC-CTTTAATAAAATTTC-G----AGAGTAG---GCAAAAA---A-A----AGTA--CATGTGTA------------TGTTGA--TGA----------T--T------AAG-AT-TTTataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|16 : caGG-TGCTGG-AACTGTTCTCCC-AGG-AAT-GTCG-------AGG---GAGTT-ACTC--GT-GAG-------------------------CTATGAATGG-TCTCCG---ATTGTTTTGAA-TGATCAAA---G-TGTC-TGA-GTCAGAGAG---ATG-----Aa
gi|18 : tgcaGTGG-CG--TATAACTGGGATCTTGAGGAAGTA-TATACACCAAA--T-AA-GGT-G-AGGGTTCT---GGG
gi|19 : aaaacaaaacatgccagattatattgttaacaAA--GCTGA-T--TATTTTGGT-GAAATGAGGTT---T--TGG------TATTTTG-A-TGTTGAATACAA-AAATTCATAAAAA--AGTTTTG
gi|2 : tttaaacagGTGG-TT--TA--ACTGGGATCTT-AGGAAGTA-TAT-CACC-AA--T-AC-GGT-A----GGTTC---GGGGG--GCC-AA-GTGAAAACC-T-----GG--T-CCAAGGGCAG-CGAC-TGA---GG-G-G---G-----GATGGG----CA----GCCC-------------CC---------AC----GGAAAACA-A-TTTCGTGTTTGTTT------G---AATTGGAT----------AA-----------T---T----------CTA-TGAACATGTATAATA---ACAAAAATTTT---T--AAT--TTT-CTC-ATTTAAA
gi|21 : tcaaatatgaaatgtaacacacatgtatgcatataatattaggtgtcctttacaattaagagttccttatttatatatatccatgcgtgttatgattgaataaatgaaatcaaacagctagtcaatttcaacacgaagcctatttcatcaaatacgctgtactacaagtacatgtcactatatatagtcaacacttacatcacattcacagcggccggcatgtatatactgtatagactttgtatctacaactatttatgaagattagggcgaaaaacccattttactaactcatgcatgataccccccccccctaagaaaacagaaacaaacataaaataaaaaggcaccacatggaaaaaaaagcaaacccaaaaaaattaagcacaatcaatcattcatcttattgtgaggttcttttctctacgtctactattaattaagatctaacagagaaccaaaacatgcagtatagttaacaTGG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---agaccataatatacaataaacagataagaatttgaagaaagtacagttccaatttgtttccaaaagtcttttttttttttaacaaagatttttaatatcttcagctaaacgaaatttctgaaagagctgtatcttctgggtgagatatttttacatttaattcatgttcagaaaaaagacattgct
gi|22 : GTGG-CG--TA--GCTAGGGCCTTGGGGAAGTAGTAG
gi|3 : caGGATCTTAAGGAAGT--TAGACACC-AAA-T-AA-GGTTG-AGGGGTCT---GGGGGCCGCC-AA-GAA-----C--CCAGTGGGTC-CCA-GGGCAG-CATCCT----TGG-G-G---G--AC-GCGGGG----------GACC-------------CCC--------AC----GGAAAACAGA-TT-CGTGTT--TTTAGACTTG---G----GA-C---------AA-----------A---T----------CTA-TGAACATG--TAATA-C-AC-AAAATTTT---G--
gi|3 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatct-------------AAA--GCTGA-TAATATTTGGGG-GG--------T---T--GGGG-----TATTTTT-A-TATTTAATGTCA-TGATTCA-GAAAA--aaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaaaagctgataatatttggggggttggggtatttttatatttaatgtcatgattcagaaaaaaaaattgctt
gi|4 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctggatcttaaggaagttagacaccaaataaggttgaggggtctgggggccgccaagaacccagtgggtcccagggcagcatccttgggggacgcgggggacccccacggaaaacagattcgtgtttttagacttgggacaaatctatgaacatgtaatacacaaaattttgaaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaGTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-ATGGGTCT---GTGGGTCGCCTAA-GGG-----C-TCCAGCGA--TTCCA-GGGCAA-CGCCCTGG--TGGTG-GTATG--TCAGAGGGG----CA-AT-GCCC-------------CCCCCCCTCCGAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGCACATG--TAATG-C-AC-AAAATGTT---G--GGT--CTC-CAT-AATGAAATTTC-G----TTAGAAG-A-GAGAGAA---A-A----TGTA--CA-----A------------TTTT-A--CAA---------TTG-T------AAG-AT-TTTATAAA--T-------------GAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--GC-AAGCAACTTATGCATTTTTTTTTTTTCAGAAAA----------AA-AATA-A-ATATAA----A-------T----CCTCT---GATGGAAAGCCATTA----AAAAACCCCAAACAAT--TTT-------------AAT--GCTGA-T--TATTTGGGG-GGAAT----TTTTAT--TAGG-----TATTTTG-A-TCTTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------GTATCAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGTCTGAAAGCG-AGAAAAGATACA-A--GAT---AGGAGA-TGCA-AGTGC-GGGG-TGCTTG-AGAAGTTTT-CTCAGG-AGT-GTCGT--GGGAAGGTGGGAGTT-GTTT--GC-GAGGGCGGGG-------TTGTTTGCGAGTCGTGAATGA-TTGTCTA--ATTGTCTTG-AATGATCAAA---G-TTTC-TGA-GTCAGAGAG---ATG-----AATTAAGAGTTCACA-------TGTCGGTC-TAAAGGGGAGGCGTaaaaattgctt
gi|5 : G--TA--GCTAGGGCCTTTAGGATGT--TAGGCACC-AAATT-AA-GGC-GGATGGGTCT---GTGGGTCGCA-AAAGGG-----T-TCCAGCGA--G-TCA-AGGCAAACGCCCGGGAGTGG-GAG---G--TCTGAGGGG----CA-AATGCCCG------------CCC-------GAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATA---------AT-----------TTTCT----------CTA-GGCACATG--TAATAGCAACAAAAATTTT---G--GGTTCTTC-CTT-AATGATATTTC-GT---TAAGAAGAA-GGGAGAAGGGA-A----GAAA--AA-----A------------TGTT-A--TAA---------TT--C------AAATAT-CTTTTAA
gi|5 : AAAA----------AA-AA-A-A-ATGCCACCTGC-------T----CCTCT---GACGAAAAGCCATTA----AAAAACCTC---CATT--TTT-------------AAAATGCTGA-T--TATTTGGGG-GAGGT----GA---T--TGGG-----TATTTTG-A-T-TTGAATGCCA-TAATTCA-GAAAAAGGGTTTCGA--ACT------ATTTGAGAACACCAT-TATT-CAA--TGGA-ATTGAATAATTATAGTTAATA-TTAGAGGCTTG---T-A-AGAGAAGATACA-AGTGAG---AGGAGATTGCA-GGTGC-GGGG-TGCATGTAGCTGTTTTCCCCAAGTAGTCGCCGTTGGGA-AGGTGGGAGTT-GTTT--GCGGAGGGC-GGGGGTTTGTTTGCTT-T-AGTCGTGAATGATTTTCTAC--ATTGTTTTGAAATGATCAAA---GTTTTC-TGA-GTCAGAG------------------AGAGTTCATAGCAACACTATCGGTCTTAAAGGGGAGGCGTcagcagaatgcctctcctgaagattaaaaaaaaaaaatgccacctgctcctctgacgaaaagccattaaaaaacctccatttttaaaatgctgattatttgggggaggtgattgggtattttgatttgaatgccataattcagaaaaagggtttcgaactatttgagaacaccattattcaatggaattgaataattatagttaatattagaggcttgtaagagaagatacaagtgagaggagattgcaggtgcggggtgcatgtagctgttttccccaagtagtcgccgttgggaaggtgggagttgtttgcggagggcgggggtttgtttgctttagtcgtgaatgattttctacattgttttgaaatgatcaaagttttctgagtcagagagagttcatagcaacactatcggtcttaaaggggaggcgt
gi|6 : gtagctagggcctttaggatgttaggcaccaaattaaggcggatgggtctgtgggtcgcaaaagggttccagcgagtcaaggcaaacgcccgggagtgggaggtctgaggggcaaatgcccgcccgatggaaaacatatttcgtgtttttgagataattttctctaggcacatgtaatagcaacaaaaattttgggttcttccttaatgatatttcgttaagaagaagggagaagggaagaaaaaatgttataattcaaatatcttttaacagcagaatgcctctcctgaagattaGTGG-CG--TA--TCTAGGATCTTGAGGATGTAGTAGACACC-AAA-T-AA-GGC-G-AGGG-TC----GGGGGCCGCC-CA-AGA-----C-CCCAGTGG--T-CCA-GGGTAG-CATCCTTG--AGG-G-G---G---G-GGGGGG----CACA--GCGC-------------CTC--------AC----GG-AAACAGATTTTCGTGTT--TTG------A---A----GATC---------ACTTGGGAACAAAT---T----------CTATGGAACATG--TAATA-C-A--AAAATTTT---GAAAAT--CTC-TCT-AATACAATTTCGG----TGACTAG-A-GCAAAAA---A-A----AAAAATAA-----A------------TAAT-A--CAA-------------T------AA--------ATAAA--T-------------AA---AGA---TAA-AT------AA-------A----AA--AAAAGT--ACG
gi|7 : attcaaacacacatgtagtcaatttcaacacaagccctatttatcccaaaacggcttgaaatctcacgctggtgtcactatcaaaattactcatcaacattcaaagtggttgtatatgtaagagctctttgttcatctaaactatttgaaattagggcgcaaccccgttttacaatcatgcttgcataccccccccaaaaatcccctaaaaaaagagggaaagacaaaaaatacaccaacagttcgtatcattgttttgaggttttcctccagaatactacataaaagtatattaaaagaaaacacaaaacatgccagattaatgtccgttaacaGTGGTCG--TA--GATAGGACTTTGA---AGTA-TAGGCACA-AAT-T-AA-GGC-G-AGGGATCC---GGGGGGAG-G-GA-GGT-----C-GCCCAAGG--T-CCA-GGACAG-CGCCCTGG--TGG-A-----------GAGTTG----CC-A--CCCCCCCCCCCCCCCCTCCC-------GGCACAAAGAGAACAGA-TTTCATTTT--TTT------GACTA----CATCTTCTTGGGAACTAAA-------T---T----------CTACGGCACATG--TACTA-T-AC-AAAAGTTTAACG--GCT--CTCATTT-AATAAAATTTC-G----TTAGTAG-A-AGGACAA---A-AGAGGGGAA--CA-----A------------TCCG-A--CTG---------TT--TTTACCAGAG-GTCTTTCTTGA--T-------------AATATATATTTTAATATTTTTTCAGCGTAATCA----AATCAAATG---ACGGAAAAA---ATGTATTTTT--------AAAAAATCAAACAAACAA-AA-ACA-ATGCAT----ATTTTTCTT----CCTAT---GGTGGAAAGCttccaatttgtt
gi|7 : A--TA-----A------------TAT--A--TAT---------TT--T------AAT-AT-TTTTTCAGCGT-------------AAT-CAAA--TCAA-AT------GACG-------------------------GAAAAA---ATGTATTTTT-------------------------A-AA-A-A-AT-CAA----A-------C-----------------AAA--CA--A----AAACAATGC--ATATT--TTTCTTCCTATGGTGGAAA--GCAGG-T--TATCCGGGA-AAAAA----TT---T----GG-----TATTCTG-A-TACTGAATGCCA-TAATGCA-aggttatccgggaaaaaatttggtattctgatactgaatgccataatgca
gi|8 : gtggtcgtagataggactttgaagtataggcacaaattaaggcgagggatccggggggagggaggtcgcccaaggtccaggacagcgccctggtggagagttgccacccccccccccccccctcccggcacaaagagaacagatttcatttttttgactacatcttcttgggaactaaattctacggcacatgtactatacaaaagtttaacggctctcatttaataaaatttcgttagtagaaggacaaaagaggggaacaatccgactgtttttaccagaggtctttcttgA---ACACATCTACTATTTTTCAAAAAG----------AACAA-A-ATATGCAA----A-------A----CTGCTCGAGGTGGACAGACATTACTTTACACACAC---ATAGTGCTTT-------------AGA--GCTGCCT--TCTATGTGGTGGAAT----TT---TATTGA-------ATTTTGCACTCTCGA--GCAAATAGATCG-GAAAA--TGTT-CGATTAAT-------TACGA----ACCATCTATTGCAACTTGGATAT------AT----GTCA--AATTAGTTGCTTGAAAA-A-TATGTAACTACATA--GAT----GGA-A-TGCATGGTGCCGGGGCTGCTTG-AACT--TTTCCCGAGGTAGT-GT-GT--GGGCAGGTGGGAGTTTATTTTGGC-AGGAGCTGGG-------TTGTTC-T-AGT------------TCTAC--ATTGTTTTGAAATGA-CAAATAGG-TCGC-TCA-G---GAGAG---ATT-----AAGTAAGAGTTCA-A-------TATCTGCG-TAA--GGGCGGCGT
gi|9 : aatataatcGGTGA-TGCA-GGTGC-GGGG-TGCTGA-AGCTGTTCTCCT-AGG-AGT-GTCGT--GGA-AG-----------TTT--GC-G-----------------TGTT--------GTGAATGA-TTTCTG---ATTGTTTTG-AATGGTCAAG---G-TGTCTTGA-GTCAGAGAA---ATGA----AAGTAAGACTTCAGA-------TACAGGAC-TAAAGGGAAAGC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTCAAATGATGAGAAGATGTCATACGATATGAAAGCTGGGTTATGAATATTAGGCCTGTCCTTTACAAAGTGTTCCTCTATTAGACTATATCATGCTGACTATGATGGAAGTTCTTTTCTGAGGGACTGCCGCAGACAACCTTAAGTTCGAGAGAAACACCTAGGTCAATTCAACACGAAGCCTATTTCATAAAAAAACGGCTTGAAATCTACGCTATACAAGTACATGTCACTAGTCAACACTTACTCCTATATCACATTCACAGCGGCTGTATATTGTA
Unaligned ( gi|12 ): AAGATGAAATGTAACGTATAATATGCATATAATATAGGTTCCTTTAACATATCTATACTCATGCGTGTTTTTTATTTTAATTTTAGCTATGAAGTAGTGGTTGTGTATAATGAATTTAAAAGCTAGTTTTTGGTCAATTTTCCAATATGAGGCCTATTTCATAAAAAACAGCTTGGGAATGTACACAGTATACATTTCACCTAGTCAGCAT
Unaligned ( gi|13 ): GTTCTCGCGAGTGTCGTGGACGTTAGTTGCGATTGTGAAAGATTGTGATTGTTTGAATGCGCATGTCTGAGTATACAGTAGACTAATAGGAAAGAGTTGGACCATGGACACGCGTGATTTATATCTTGTTAGCATTCATCTTTATATCAAAGATCTGGTATTGTAAGTTTTTCTTGTAACATTAGTGTGCA
Unaligned ( gi|14 ): TATATTTTGTCAGCATCAACGATAAAAAGGCGAAAAAAATCTGGTATTTTATCACACTTTAATTTTTTTCTCTGTTTTATTTTCATTTTTTGGGGGGTAAAAACTATGTGTAGTGCCTAATGGCAGCTACGCCACTGA
Unaligned ( gi|15 ): GTTGACATTGCGTCACGGTCGGGTTTATATCTTGTTAGCATCAATGACTTTTGATAAGCGTAAATTTAATATTCTATTTTTTTTATTGGTAAAATTGACATGAAGGCA
Unaligned ( gi|17 ): AATGACTTTCAATAACCGAAAATATGGTATTTTATAATATGAAAATTATGTGTAGGCACGTGCCTTAAGTGCCTAATGGCAGCTACGTCACTG
Unaligned ( gi|20 ): TATTTTATTGAAAATTATATTGTAGGCACATGCCTACTCAAGGCCTAACGACGCTACGCCCT
Alignments
lowQualScore : 11 11 11111111 1111 11111 3333333333333 55555555555555555555555555555555555555555555 111111111111111 5555555555555555555555555555555555555 1 111 1 111111 2222 111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 333333333333333333333333 111 5555555555555555555555555 1111111 44444444444444444444444444 444444444444444444444444 3333333 1 1 11 1 333333333333 1111 1111 11111 2222 1 1 222222 999999999999999999999999999999999999 111 22222 1 111 111 22222 2222222 1
lowQualScore : 4 11 55 1 7 4 77 8 4 4 4 777 99 5 5 55555555 4 3333 5 5 0 11111 2222222222222 66666666666666666666666666666666666666666666 2 5 66 888888888888888 9999999999999999999999999999999999999 0 1 66 0 444 0 3 000000 77 5 55 0 6 0000 1 222 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 666666666666666666666666 6 6 222 1 3333333333333333333333333 9999999 0 11111111111111111111111111 77 5 77 0 5 000000000000000000000000 5 5 7 5 5 99 0 3 5555555 1 2 55 0 0 33 0 111111111111 4444 3 5555 88888 0000 8 8 8 6 6 6 0 3 6 777777 3 6 888888888888888888888888888888888888 000 00000 5 111 6 1 6 6 111 33333 8 6666666 1 0 3
lowQualScore : . .. .. . . . .. . . . . ... .. . . ........ . .... . . . ..... ............. ............................................ . . .. ............... ..................................... . . .. . ... . . ...... .. . .. . . .... . ... . ...................................................................................................................................................... ... ........................ . . ... . ......................... ....... . .......................... .. . .. . . ........................ . . . . . .. . . ....... . . .. . . .. . ............ .... . .... ..... .... . . . . . . . . . ...... . . .................................... ... ..... . ... . . . . ... ..... . ....... . . .
lowQualScore : 4 00 55 3 3 0 55 0 0 0 0 000 66 7 7 99999999 0 9999 0 0 2 00000 1111111111111 66666666666666666666666666666666666666666666 5 0 99 666666666666666 5555555555555555555555555555555555555 0 0 99 2 555 0 2 888888 99 7 99 4 7 8888 0 555 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000 555555555555555555555555 7 7 555 0 8888888888888888888888888 2222222 6 77777777777777777777777777 99 7 99 1 7 777777777777777777777777 7 7 0 7 7 22 8 2 8888888 0 5 55 0 0 88 0 555555555555 8888 2 0000 00000 8888 0 0 0 7 7 7 8 3 7 000000 2 7 000000000000000000000000000000000000 777 22222 5 777 7 0 7 7 777 33333 6 0000000 2 0 2
consensus : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-CTT-AATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTTC--TAGT-GTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
Reference ( family-807 ) : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-CTT-AATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTTT--TAGTCGTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
gi|1 : GG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---GGG
gi|1 : GG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---GGTTC-GTGGGGGAACTA-A--GCCC-------------CCC-------GAC----AAAAAACAGA-TTTAATGTT--TTT------G---A----GATC---------AC-----------T---TGGGAACAATTCTA-GGCACGTG--TATTA-C-AC-AAA-TTTC---A--GGT--CTC-TT-----GAAATCTC-GATCGTTAGTAG-AAGGGAAAA---ATA----TGTA--CA-----ATCCATTGAATTCTTTT-AACCAGAGGTCTTTCTTACT------AAG-AT-TTTCTATA--TTTATTTTCAGCGTAAT-CAAA--TTAT-AT------GACG-----AGGAAAA--AAATTTCAATAAAAAAA---ATGCATTTTTTTTATTCCAGAAAA----------AA-AA-A----TGCAACA--A-------TGCCTCCTTT---GGTAAAAAGCCAT------AAAAATCC------AT--TTA-------------AAA--GCTGA-T--TATT-GGGG-GG---------------TGGGGGTGCTATTTTG-A-TATTGAATGTCA-TAATTCA-GAAAA--GGTTTCGATTAATTATAATATATCAGACAACCTT-TATT-CAA--GTGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-AGAGAAAAGATAC--A--GATATAAGGAGT-TGCA-GGTGA-GGGA--GATTG-AACTGTTTT-CCCAGG-AGT-GTCGT------ACGTGGGAGTT-GT--------------GGA-------T---------------AAT---TTTCTGCCGATTGTTTTG-AATGGTCAAA---G-TGTC-TGAGGTCA-AGAGCACATGAATTAAAGTAAGAGTTCATA-------TATtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaggtccagggcagcgccctggtggggggttcgtgggggaactaagccccccgacaaaaaacagatttaatgtttttgagatcacttgggaacaattctaggcacgtgtattacacaaatttcaggtctcttgaaatctcgatcgttagtagaagggaaaaatatgtacaatccattgaattcttttaaccagaggtctttcttactaagattttctatatttattttcagcgtaatcaaattatatgacgaggaaaaaaatttcaataaaaaaaatgcattttttttattccagaaaaaaaaatgcaacaatgcctcctttggtaaaaagccataaaaatccatttaaaagctgattattggggggtgggggtgctattttgatattgaatgtcataattcagaaaaggtttcgattaattataatatatcagacaacctttattcaagtgaatattgtcaattagaggcttgaaagagagaaaagatacagatataaggagttgcaggtgagggagattgaactgttttcccaggagtgtcgtacgtgggagttgtggataattttctgccgattgttttgaatggtcaaagtgtctgaggtcaagagcacatgaattaaagtaagagttcatatatataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|11 : ggcggttagctagggccttgggaagtataggcaccaatcaaggcgaggtgtctgggtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaGTGG-CG--TA--GCTAAGACATTGAGGATGTA-TAGGCACC-AA--T-AAAGGC-G-ACGGGTATATAGGGAGC-GCC-AA-AGG-----CCTCCAGTGG-----------------------------------G--TC-CAGGGG----CA----GC--------------------------A-----GGAAAACAGA-TTTTGTATT--TTT------G---A----GATC---------AC-----------T---T------------G-GGGACA--------A---AC-TAG--TTT---G--GGT--CTC-CTTTAATAAAATTTC-G----AGAGTAG---GCAAAAA---A-A----AGTA--CATGTGTA------------TGTTGA--TGA----------T--T------AAG-AT-TTTataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|16 : caGG-TGCTGG-AACTGTTCTCCC-AGG-AAT-GTCG-------AGG---GAGTT-ACTC--GT-GAG-------------------C--TA----TGAATGG-TCTCCG---ATTGTTTTGAA-TGATCAAA---G-TGTC-TGA-GTCAGAGAG---ATG-----Aa
gi|18 : tgcaGTGG-CG--TATAACTGGGATCTTGAGGAAGTA-TATACACCAAA--T-AA-GGT-G-AGGGTTCT---GGG
gi|19 : aaaacaaaacatgccagattatattgttaacaAA--GCTGA-T--TATTTTGGT-GAAATGAGGTT---T--TGG------TATTTTG-A-TGTTGAATACAA-AAATTCATAAAAA--AGTTTTG
gi|2 : tttaaacagGTGG-TT--TA--ACTGGGATCTT-AGGAAGTA-TAT-CACC-AA--T-AC-GGT-A----GGTTC---GGGGG--GCC-AA-GTGAAAACC-T-----GG--T-CCAAGGGCAG-CGAC-TGA---GG-G-G---G-----GATGGG----CA----GCCC-------------CC---------AC----GGAAAACA-A-TTTCGTGTTTGTTT------G---AATTGGAT----------AA-----------T---T----------CTA-TGAACATGTATAATA---ACAAAAATTTT---T--AAT--TTT-CTC-ATTTAAA
gi|21 : tcaaatatgaaatgtaacacacatgtatgcatataatattaggtgtcctttacaattaagagttccttatttatatatatccatgcgtgttatgattgaataaatgaaatcaaacagctagtcaatttcaacacgaagcctatttcatcaaatacgctgtactacaagtacatgtcactatatatagtcaacacttacatcacattcacagcggccggcatgtatatactgtatagactttgtatctacaactatttatgaagattagggcgaaaaacccattttactaactcatgcatgataccccccccccctaagaaaacagaaacaaacataaaataaaaaggcaccacatggaaaaaaaagcaaacccaaaaaaattaagcacaatcaatcattcatcttattgtgaggttcttttctctacgtctactattaattaagatctaacagagaaccaaaacatgcagtatagttaacaTGG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---agaccataatatacaataaacagataagaatttgaagaaagtacagttccaatttgtttccaaaagtcttttttttttttaacaaagatttttaatatcttcagctaaacgaaatttctgaaagagctgtatcttctgggtgagatatttttacatttaattcatgttcagaaaaaagacattgct
gi|22 : GTGG-CG--TA--GCTAGGGCCTTGGGGAAGTAGTAG
gi|3 : caGGATCTTAAGGAAGT--TAGACACC-AAA-T-AA-GGTTG-AGGGGTCT---GGGGGCCGCC-AA-GAA-----C--CCAGTGGGTC-CCA-GGGCAG-CATCCT----TGG-G-G---G--AC-GCGGGG----------GACC-------------CCC--------AC----GGAAAACAGA-TT-CGTGTT--TTTAGACTTG---G----GA-C---------AA-----------A---T----------CTA-TGAACATG--TAATA-C-AC-AAAATTTT---G--
gi|3 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatct-------------AAA--GCTGA-TAATATTTGGGG-GG--------T---T--GGGG-----TATTTTT-A-TATTTAATGTCA-TGATTCA-GAAAA--aaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaaaagctgataatatttggggggttggggtatttttatatttaatgtcatgattcagaaaaaaaaattgctt
gi|4 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctggatcttaaggaagttagacaccaaataaggttgaggggtctgggggccgccaagaacccagtgggtcccagggcagcatccttgggggacgcgggggacccccacggaaaacagattcgtgtttttagacttgggacaaatctatgaacatgtaatacacaaaattttgaaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaGTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-ATGGGTCT---GTGGGTCGCCTAA-GGG-----C-TCCAGCGA--TTCCA-GGGCAA-CGCCCTGG--TGGTG-GTATG--TCAGAGGGG----CA-AT-GCCC-------------CCCCCCCTCCGAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGCACATG--TAATG-C-AC-AAAATGTT---G--GGT--CTC-CAT-AATGAAATTTC-G----TTAGAAG-A-GAGAGAA---A-A----TGTA--CA-----A------------TTTT-A--CAA---------TTG-T------AAG-AT-TTTATAAA--T-------------GAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--GC-AAGCAACTTATGCATTTTTTTTTTTTCAGAAAA----------AA-AATA-A-ATATAA----A-------T----CCTCT---GATGGAAAGCCATTA----AAAAACCCCAAACAAT--TTT-------------AAT--GCTGA-T--TATTTGGGG-GGAAT----TTTTAT--TAGG-----TATTTTG-A-TCTTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------GTATCAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGTCTGAAAGCG-AGAAAAGATACA-A--GAT---AGGAGA-TGCA-AGTGC-GGGG-TGCTTG-AGAAGTTTT-CTCAGG-AGT-GTCGT--GGGAAGGTGGGAGTT-GTTT--GC-GAGGGCGGGG-------TTGTTTGCGAGTCGTGAATGA-TTGTCTA--ATTGTCTTG-AATGATCAAA---G-TTTC-TGA-GTCAGAGAG---ATG-----AATTAAGAGTTCACA-------TGTCGGTC-TAAAGGGGAGGCGTaaaaattgctt
gi|5 : G--TA--GCTAGGGCCTTTAGGATGT--TAGGCACC-AAATT-AA-GGC-GGATGGGTCT---GTGGGTCGCA-AAAGGG-----T-TCCAGCGA--G-TCA-AGGCAAACGCCCGGGAGTGG-GAG---G--TCTGAGGGG----CA-AATGCCCG------------CCC-------GAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATA---------AT-----------TTTCT----------CTA-GGCACATG--TAATAGCAACAAAAATTTT---G--GGTTCTTC-CTT-AATGATATTTC-GT---TAAGAAGAA-GGGAGAAGGGA-A----GAAA--AA-----A------------TGTT-A--TAA---------TT--C------AAATAT-CTTTTAA
gi|5 : AAAA----------AA-AA-A-A-ATGCCACCTGC-------T----CCTCT---GACGAAAAGCCATTA----AAAAACCTC---CATT--TTT-------------AAAATGCTGA-T--TATTTGGGG-GAGGT----GA---T--TGGG-----TATTTTG-A-T-TTGAATGCCA-TAATTCA-GAAAAAGGGTTTCGA--ACT------ATTTGAGAACACCAT-TATT-CAA--TGGA-ATTGAATAATTATAGTTAATA-TTAGAGGCTTG---T-A-AGAGAAGATACA-AGTGAG---AGGAGATTGCA-GGTGC-GGGG-TGCATGTAGCTGTTTTCCCCAAGTAGTCGCCGTTGGGA-AGGTGGGAGTT-GTTT--GCGGAGGGC-GGGGGTTTGTTTGCTT--TAGTCGTGAATGATTTTCTAC--ATTGTTTTGAAATGATCAAA---GTTTTC-TGA-GTCAGAG------------------AGAGTTCATAGCAACACTATCGGTCTTAAAGGGGAGGCGTcagcagaatgcctctcctgaagattaaaaaaaaaaaatgccacctgctcctctgacgaaaagccattaaaaaacctccatttttaaaatgctgattatttgggggaggtgattgggtattttgatttgaatgccataattcagaaaaagggtttcgaactatttgagaacaccattattcaatggaattgaataattatagttaatattagaggcttgtaagagaagatacaagtgagaggagattgcaggtgcggggtgcatgtagctgttttccccaagtagtcgccgttgggaaggtgggagttgtttgcggagggcgggggtttgtttgctttagtcgtgaatgattttctacattgttttgaaatgatcaaagttttctgagtcagagagagttcatagcaacactatcggtcttaaaggggaggcgt
gi|6 : gtagctagggcctttaggatgttaggcaccaaattaaggcggatgggtctgtgggtcgcaaaagggttccagcgagtcaaggcaaacgcccgggagtgggaggtctgaggggcaaatgcccgcccgatggaaaacatatttcgtgtttttgagataattttctctaggcacatgtaatagcaacaaaaattttgggttcttccttaatgatatttcgttaagaagaagggagaagggaagaaaaaatgttataattcaaatatcttttaacagcagaatgcctctcctgaagattaGTGG-CG--TA--TCTAGGATCTTGAGGATGTAGTAGACACC-AAA-T-AA-GGC-G-AGGG-TC----GGGGGCCGCC-CA-AGA-----C-CCCAGTGG--T-CCA-GGGTAG-CATCCTTG--AGG-G-G---G---G-GGGGGG----CACA--GCGC-------------CTC--------AC----GG-AAACAGATTTTCGTGTT--TTG------A---A----GATC---------ACTTGGGAACAAAT---T----------CTATGGAACATG--TAATA-C-A--AAAATTTT---GAAAAT--CTC-TCT-AATACAATTTCGG----TGACTAG-A-GCAAAAA---A-A----AAAAATAA-----A------------TAAT-A--CAA-------------T------AA--------ATAAA--T-------------AA---AGA---TAA-AT------AA-------A----AA--AAAAGT--ACG
gi|7 : attcaaacacacatgtagtcaatttcaacacaagccctatttatcccaaaacggcttgaaatctcacgctggtgtcactatcaaaattactcatcaacattcaaagtggttgtatatgtaagagctctttgttcatctaaactatttgaaattagggcgcaaccccgttttacaatcatgcttgcataccccccccaaaaatcccctaaaaaaagagggaaagacaaaaaatacaccaacagttcgtatcattgttttgaggttttcctccagaatactacataaaagtatattaaaagaaaacacaaaacatgccagattaatgtccgttaacaGTGGTCG--TA--GATAGGACTTTGA---AGTA-TAGGCACA-AAT-T-AA-GGC-G-AGGGATCC---GGGGGGAG-G-GA-GGT-----C-GCCCAAGG--T-CCA-GGACAG-CGCCCTGG--TGG-A-----------GAGTTG----CC-A--CCCCCCCCCCCCCCCCTCCC-------GGCACAAAGAGAACAGA-TTTCATTTT--TTT------GACTA----CATCTTCTTGGGAACTAAA-------T---T----------CTACGGCACATG--TACTA-T-AC-AAAAGTTTAACG--GCT--CTCATTT-AATAAAATTTC-G----TTAGTAG-A-AGGACAA---A-AGAGGGGAA--CA-----A------------TCCG-A--CTG---------TT--TTTACCAGAG-GTCTTTCTTGA--T-------------AATATATATTTTAATATTTTTTCAGCGTAATCA----AATCAAATG---ACGGAAAAA---ATGTATTTTT--------AAAAAATCAAACAAACAA-AA-ACA-ATGCAT----ATTTTTCTT----CCTAT---GGTGGAAAGCttccaatttgtt
gi|7 : A--TA-----A------------TAT--A--TAT---------TT--T------AAT-AT-TTTTTCAGCGT-------------AAT-CAAA--TCAA-AT------GACG-------------------------GAAAAA---ATGTATTTTT-------------------------A-AA-A-A-AT-CAA----A-------C-----------------AAA--CA--A----AAACAATGC--ATATT--TTTCTTCCTATGGTGGAAA--GCAGG-T--TATCCGGGA-AAAAA----TT---T----GG-----TATTCTG-A-TACTGAATGCCA-TAATGCA-aggttatccgggaaaaaatttggtattctgatactgaatgccataatgca
gi|8 : gtggtcgtagataggactttgaagtataggcacaaattaaggcgagggatccggggggagggaggtcgcccaaggtccaggacagcgccctggtggagagttgccacccccccccccccccctcccggcacaaagagaacagatttcatttttttgactacatcttcttgggaactaaattctacggcacatgtactatacaaaagtttaacggctctcatttaataaaatttcgttagtagaaggacaaaagaggggaacaatccgactgtttttaccagaggtctttcttgA---ACACATCTACTATTTTTCAAAAAG----------AACAA-A-ATATGCAA----A-------A----CTGCTCGAGGTGGACAGACATTACTTTACACACAC---ATAGTGCTTT-------------AGA--GCTGCCT--TCTATGTGGTGGAAT----TT---TATTGA-------ATTTTGCACTCTCGA--GCAAATAGATCG-GAAAA--TGTT-CGATTAAT-------TACGA----ACCATCTATTGCAACTTGGATAT------AT----GTCA--AATTAGTTGCTTGAAAA-A-TATGTAACTACATA--GAT----GGA-A-TGCATGGTGCCGGGGCTGCTTG-AACT--TTTCCCGAGGTAGT-GT-GT--GGGCAGGTGGGAGTTTATTTTGGC-AGGAGCTGGG-------TTGTTC--TAGT------------TCTAC--ATTGTTTTGAAATGA-CAAATAGG-TCGC-TCA-G---GAGAG---ATT-----AAGTAAGAGTTCA-A-------TATCTGCG-TAA--GGGCGGCGT
gi|9 : aatataatcGGTGA-TGCA-GGTGC-GGGG-TGCTGA-AGCTGTTCTCCT-AGG-AGT-GTCGT--GGA-AG-----------TTT--GC-G-----------------TGTT--------GTGAATGA-TTTCTG---ATTGTTTTG-AATGGTCAAG---G-TGTCTTGA-GTCAGAGAA---ATGA----AAGTAAGACTTCAGA-------TACAGGAC-TAAAGGGAAAGC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTCAAATGATGAGAAGATGTCATACGATATGAAAGCTGGGTTATGAATATTAGGCCTGTCCTTTACAAAGTGTTCCTCTATTAGACTATATCATGCTGACTATGATGGAAGTTCTTTTCTGAGGGACTGCCGCAGACAACCTTAAGTTCGAGAGAAACACCTAGGTCAATTCAACACGAAGCCTATTTCATAAAAAAACGGCTTGAAATCTACGCTATACAAGTACATGTCACTAGTCAACACTTACTCCTATATCACATTCACAGCGGCTGTATATTGTA
Unaligned ( gi|12 ): AAGATGAAATGTAACGTATAATATGCATATAATATAGGTTCCTTTAACATATCTATACTCATGCGTGTTTTTTATTTTAATTTTAGCTATGAAGTAGTGGTTGTGTATAATGAATTTAAAAGCTAGTTTTTGGTCAATTTTCCAATATGAGGCCTATTTCATAAAAAACAGCTTGGGAATGTACACAGTATACATTTCACCTAGTCAGCAT
Unaligned ( gi|13 ): GTTCTCGCGAGTGTCGTGGACGTTAGTTGCGATTGTGAAAGATTGTGATTGTTTGAATGCGCATGTCTGAGTATACAGTAGACTAATAGGAAAGAGTTGGACCATGGACACGCGTGATTTATATCTTGTTAGCATTCATCTTTATATCAAAGATCTGGTATTGTAAGTTTTTCTTGTAACATTAGTGTGCA
Unaligned ( gi|14 ): TATATTTTGTCAGCATCAACGATAAAAAGGCGAAAAAAATCTGGTATTTTATCACACTTTAATTTTTTTCTCTGTTTTATTTTCATTTTTTGGGGGGTAAAAACTATGTGTAGTGCCTAATGGCAGCTACGCCACTGA
Unaligned ( gi|15 ): GTTGACATTGCGTCACGGTCGGGTTTATATCTTGTTAGCATCAATGACTTTTGATAAGCGTAAATTTAATATTCTATTTTTTTTATTGGTAAAATTGACATGAAGGCA
Unaligned ( gi|17 ): AATGACTTTCAATAACCGAAAATATGGTATTTTATAATATGAAAATTATGTGTAGGCACGTGCCTTAAGTGCCTAATGGCAGCTACGTCACTG
Unaligned ( gi|20 ): TATTTTATTGAAAATTATATTGTAGGCACATGCCTACTCAAGGCCTAACGACGCTACGCCCT
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 11 11 11111111 1111 11111 3333333333333 55555555555555555555555555555555555555555555 111111111111111 6666666666666666666666666666666666666 1 111 1 111111 2222 111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 333333333333333333333333 111 5555555555555555555555555 1111111 44444444444444444444444444 444444444444444444444444 3333333 1 1 11 1 333333333333 1111 1111 11111 2222 1 1 222222 000000000000000000000000000000000000 111 22222 1 111 111 22222 2222222 1
lowQualScore : 4 11 55 1 7 4 77 8 4 4 4 777 99 5 5 55555555 4 3333 5 5 0 11111 2222222222222 66666666666666666666666666666666666666666666 2 5 66 888888888888888 5555555555555555555555555555555555555 0 1 66 3 111 0 3 000000 77 888 0 0 6 0000 1 222 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 666666666666666666666666 6 6 222 1 3333333333333333333333333 9999999 0 11111111111111111111111111 77 5 77 0 5 000000000000000000000000 5 5 7 5 5 99 0 3 5555555 1 2 55 0 0 33 0 111111111111 4444 3 5555 88888 0000 8 8 8 6 6 6 0 3 6 777777 3 6 111111111111111111111111111111111111 000 00000 5 111 6 1 6 6 111 33333 8 6666666 1 0 3
lowQualScore : . .. .. . . . .. . . . . ... .. . . ........ . .... . . . ..... ............. ............................................ . . .. ............... ..................................... . . .. . ... . . ...... .. ... . . . .... . ... . ...................................................................................................................................................... ... ........................ . . ... . ......................... ....... . .......................... .. . .. . . ........................ . . . . . .. . . ....... . . .. . . .. . ............ .... . .... ..... .... . . . . . . . . . ...... . . .................................... ... ..... . ... . . . . ... ..... . ....... . . .
lowQualScore : 4 00 55 3 3 0 55 0 0 0 0 000 66 7 7 99999999 0 9999 0 0 2 00000 1111111111111 66666666666666666666666666666666666666666666 5 0 99 666666666666666 6666666666666666666666666666666666666 0 0 99 4 444 0 2 888888 99 333 1 4 7 8888 0 555 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000 555555555555555555555555 7 7 555 0 8888888888888888888888888 2222222 6 77777777777777777777777777 99 7 99 1 7 777777777777777777777777 7 7 0 7 7 22 8 2 8888888 0 5 55 0 0 88 0 555555555555 8888 2 0000 00000 8888 0 0 0 7 7 7 8 3 7 000000 2 7 777777777777777777777777777777777777 777 22222 5 777 7 0 7 7 777 33333 6 0000000 2 0 2
consensus : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTAATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTT--CTAGT-GTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
Reference ( family-807 ) : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTAATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTT--CTAGT-GTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
gi|1 : GG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---GGG
gi|1 : GG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---GGTTC-GTGGGGGAACTA-A--GCCC-------------CCC-------GAC----AAAAAACAGA-TTTAATGTT--TTT------G---A----GATC---------AC-----------T---TGGGAACAATTCTA-GGCACGTG--TATTA-C-AC-AAA-TTTC---A--GGT--CTC-T-T----GAAATCTC-GATCGTTAGTAG-AAGGGAAAA---ATA----TGTA--CA-----ATCCATTGAATTCTTTT-AACCAGAGGTCTTTCTTACT------AAG-AT-TTTCTATA--TTTATTTTCAGCGTAAT-CAAA--TTAT-AT------GACG-----AGGAAAA--AAATTTCAATAAAAAAA---ATGCATTTTTTTTATTCCAGAAAA----------AA-AA-A----TGCAACA--A-------TGCCTCCTTT---GGTAAAAAGCCAT------AAAAATCC------AT--TTA-------------AAA--GCTGA-T--TATT-GGGG-GG---------------TGGGGGTGCTATTTTG-A-TATTGAATGTCA-TAATTCA-GAAAA--GGTTTCGATTAATTATAATATATCAGACAACCTT-TATT-CAA--GTGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-AGAGAAAAGATAC--A--GATATAAGGAGT-TGCA-GGTGA-GGGA--GATTG-AACTGTTTT-CCCAGG-AGT-GTCGT------ACGTGGGAGTT-GT--------------GGA-------T---------------AAT---TTTCTGCCGATTGTTTTG-AATGGTCAAA---G-TGTC-TGAGGTCA-AGAGCACATGAATTAAAGTAAGAGTTCATA-------TATtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaggtccagggcagcgccctggtggggggttcgtgggggaactaagccccccgacaaaaaacagatttaatgtttttgagatcacttgggaacaattctaggcacgtgtattacacaaatttcaggtctcttgaaatctcgatcgttagtagaagggaaaaatatgtacaatccattgaattcttttaaccagaggtctttcttactaagattttctatatttattttcagcgtaatcaaattatatgacgaggaaaaaaatttcaataaaaaaaatgcattttttttattccagaaaaaaaaatgcaacaatgcctcctttggtaaaaagccataaaaatccatttaaaagctgattattggggggtgggggtgctattttgatattgaatgtcataattcagaaaaggtttcgattaattataatatatcagacaacctttattcaagtgaatattgtcaattagaggcttgaaagagagaaaagatacagatataaggagttgcaggtgagggagattgaactgttttcccaggagtgtcgtacgtgggagttgtggataattttctgccgattgttttgaatggtcaaagtgtctgaggtcaagagcacatgaattaaagtaagagttcatatatataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|11 : ggcggttagctagggccttgggaagtataggcaccaatcaaggcgaggtgtctgggtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaGTGG-CG--TA--GCTAAGACATTGAGGATGTA-TAGGCACC-AA--T-AAAGGC-G-ACGGGTATATAGGGAGC-GCC-AA-AGG-----CCTCCAGTGG-----------------------------------G--TC-CAGGGG----CA----GC--------------------------A-----GGAAAACAGA-TTTTGTATT--TTT------G---A----GATC---------AC-----------T---------------TG-GGGACA-----A------AC-TAG--TTT---G--GGT--CTC-CTTTAATAAAATTTC-G----AGAGTAG---GCAAAAA---A-A----AGTA--CATGTGTA------------TGTTGA--TGA----------T--T------AAG-AT-TTTataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|16 : caGG-TGCTGG-AACTGTTCTCCC-AGG-AAT-GTCG-------AGG---GAGTT-ACTC--GT-GAG---------------------CTA----TGAATGG-TCTCCG---ATTGTTTTGAA-TGATCAAA---G-TGTC-TGA-GTCAGAGAG---ATG-----Aa
gi|18 : tgcaGTGG-CG--TATAACTGGGATCTTGAGGAAGTA-TATACACCAAA--T-AA-GGT-G-AGGGTTCT---GGG
gi|19 : aaaacaaaacatgccagattatattgttaacaAA--GCTGA-T--TATTTTGGT-GAAATGAGGTT---T--TGG------TATTTTG-A-TGTTGAATACAA-AAATTCATAAAAA--AGTTTTG
gi|2 : tttaaacagGTGG-TT--TA--ACTGGGATCTT-AGGAAGTA-TAT-CACC-AA--T-AC-GGT-A----GGTTC---GGGGG--GCC-AA-GTGAAAACC-T-----GG--T-CCAAGGGCAG-CGAC-TGA---GG-G-G---G-----GATGGG----CA----GCCC-------------CC---------AC----GGAAAACA-A-TTTCGTGTTTGTTT------G---AATTGGAT----------AA-----------T---T----------CTA-TGAACATGTATAATA---ACAAAAATTTT---T--AAT--TTT-C-TCATTTAAA
gi|21 : tcaaatatgaaatgtaacacacatgtatgcatataatattaggtgtcctttacaattaagagttccttatttatatatatccatgcgtgttatgattgaataaatgaaatcaaacagctagtcaatttcaacacgaagcctatttcatcaaatacgctgtactacaagtacatgtcactatatatagtcaacacttacatcacattcacagcggccggcatgtatatactgtatagactttgtatctacaactatttatgaagattagggcgaaaaacccattttactaactcatgcatgataccccccccccctaagaaaacagaaacaaacataaaataaaaaggcaccacatggaaaaaaaagcaaacccaaaaaaattaagcacaatcaatcattcatcttattgtgaggttcttttctctacgtctactattaattaagatctaacagagaaccaaaacatgcagtatagttaacaTGG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---agaccataatatacaataaacagataagaatttgaagaaagtacagttccaatttgtttccaaaagtcttttttttttttaacaaagatttttaatatcttcagctaaacgaaatttctgaaagagctgtatcttctgggtgagatatttttacatttaattcatgttcagaaaaaagacattgct
gi|22 : GTGG-CG--TA--GCTAGGGCCTTGGGGAAGTAGTAG
gi|3 : caGGATCTTAAGGAAGT--TAGACACC-AAA-T-AA-GGTTG-AGGGGTCT---GGGGGCCGCC-AA-GAA-----C--CCAGTGGGTC-CCA-GGGCAG-CATCCT----TGG-G-G---G--AC-GCGGGG----------GACC-------------CCC--------AC----GGAAAACAGA-TT-CGTGTT--TTTAGACTTG---G----GA-C---------AA-----------A---T----------CTA-TGAACATG--TAATA-C-AC-AAAATTTT---G--
gi|3 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatct-------------AAA--GCTGA-TAATATTTGGGG-GG--------T---T--GGGG-----TATTTTT-A-TATTTAATGTCA-TGATTCA-GAAAA--aaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaaaagctgataatatttggggggttggggtatttttatatttaatgtcatgattcagaaaaaaaaattgctt
gi|4 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctggatcttaaggaagttagacaccaaataaggttgaggggtctgggggccgccaagaacccagtgggtcccagggcagcatccttgggggacgcgggggacccccacggaaaacagattcgtgtttttagacttgggacaaatctatgaacatgtaatacacaaaattttgaaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaGTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-ATGGGTCT---GTGGGTCGCCTAA-GGG-----C-TCCAGCGA--TTCCA-GGGCAA-CGCCCTGG--TGGTG-GTATG--TCAGAGGGG----CA-AT-GCCC-------------CCCCCCCTCCGAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGCACATG--TAATG-C-AC-AAAATGTT---G--GGT--CTC-C-ATAATGAAATTTC-G----TTAGAAG-A-GAGAGAA---A-A----TGTA--CA-----A------------TTTT-A--CAA---------TTG-T------AAG-AT-TTTATAAA--T-------------GAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--GC-AAGCAACTTATGCATTTTTTTTTTTTCAGAAAA----------AA-AATA-A-ATATAA----A-------T----CCTCT---GATGGAAAGCCATTA----AAAAACCCCAAACAAT--TTT-------------AAT--GCTGA-T--TATTTGGGG-GGAAT----TTTTAT--TAGG-----TATTTTG-A-TCTTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------GTATCAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGTCTGAAAGCG-AGAAAAGATACA-A--GAT---AGGAGA-TGCA-AGTGC-GGGG-TGCTTG-AGAAGTTTT-CTCAGG-AGT-GTCGT--GGGAAGGTGGGAGTT-GTTT--GC-GAGGGCGGGG-------TTGTTTGCGAGTCGTGAATGA-TTGTCTA--ATTGTCTTG-AATGATCAAA---G-TTTC-TGA-GTCAGAGAG---ATG-----AATTAAGAGTTCACA-------TGTCGGTC-TAAAGGGGAGGCGTaaaaattgctt
gi|5 : G--TA--GCTAGGGCCTTTAGGATGT--TAGGCACC-AAATT-AA-GGC-GGATGGGTCT---GTGGGTCGCA-AAAGGG-----T-TCCAGCGA--G-TCA-AGGCAAACGCCCGGGAGTGG-GAG---G--TCTGAGGGG----CA-AATGCCCG------------CCC-------GAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATA---------AT-----------TTTCT----------CTA-GGCACATG--TAATAGCAACAAAAATTTT---G--GGTTCTTC-C-TTAATGATATTTC-GT---TAAGAAGAA-GGGAGAAGGGA-A----GAAA--AA-----A------------TGTT-A--TAA---------TT--C------AAATAT-CTTTTAA
gi|5 : AAAA----------AA-AA-A-A-ATGCCACCTGC-------T----CCTCT---GACGAAAAGCCATTA----AAAAACCTC---CATT--TTT-------------AAAATGCTGA-T--TATTTGGGG-GAGGT----GA---T--TGGG-----TATTTTG-A-T-TTGAATGCCA-TAATTCA-GAAAAAGGGTTTCGA--ACT------ATTTGAGAACACCAT-TATT-CAA--TGGA-ATTGAATAATTATAGTTAATA-TTAGAGGCTTG---T-A-AGAGAAGATACA-AGTGAG---AGGAGATTGCA-GGTGC-GGGG-TGCATGTAGCTGTTTTCCCCAAGTAGTCGCCGTTGGGA-AGGTGGGAGTT-GTTT--GCGGAGGGC-GGGGGTTTGTTTGCT--TTAGTCGTGAATGATTTTCTAC--ATTGTTTTGAAATGATCAAA---GTTTTC-TGA-GTCAGAG------------------AGAGTTCATAGCAACACTATCGGTCTTAAAGGGGAGGCGTcagcagaatgcctctcctgaagattaaaaaaaaaaaatgccacctgctcctctgacgaaaagccattaaaaaacctccatttttaaaatgctgattatttgggggaggtgattgggtattttgatttgaatgccataattcagaaaaagggtttcgaactatttgagaacaccattattcaatggaattgaataattatagttaatattagaggcttgtaagagaagatacaagtgagaggagattgcaggtgcggggtgcatgtagctgttttccccaagtagtcgccgttgggaaggtgggagttgtttgcggagggcgggggtttgtttgctttagtcgtgaatgattttctacattgttttgaaatgatcaaagttttctgagtcagagagagttcatagcaacactatcggtcttaaaggggaggcgt
gi|6 : gtagctagggcctttaggatgttaggcaccaaattaaggcggatgggtctgtgggtcgcaaaagggttccagcgagtcaaggcaaacgcccgggagtgggaggtctgaggggcaaatgcccgcccgatggaaaacatatttcgtgtttttgagataattttctctaggcacatgtaatagcaacaaaaattttgggttcttccttaatgatatttcgttaagaagaagggagaagggaagaaaaaatgttataattcaaatatcttttaacagcagaatgcctctcctgaagattaGTGG-CG--TA--TCTAGGATCTTGAGGATGTAGTAGACACC-AAA-T-AA-GGC-G-AGGG-TC----GGGGGCCGCC-CA-AGA-----C-CCCAGTGG--T-CCA-GGGTAG-CATCCTTG--AGG-G-G---G---G-GGGGGG----CACA--GCGC-------------CTC--------AC----GG-AAACAGATTTTCGTGTT--TTG------A---A----GATC---------ACTTGGGAACAAAT---T----------CTATGGAACATG--TAATA-C-A--AAAATTTT---GAAAAT--CTC-T-CTAATACAATTTCGG----TGACTAG-A-GCAAAAA---A-A----AAAAATAA-----A------------TAAT-A--CAA-------------T------AA--------ATAAA--T-------------AA---AGA---TAA-AT------AA-------A----AA--AAAAGT--ACG
gi|7 : attcaaacacacatgtagtcaatttcaacacaagccctatttatcccaaaacggcttgaaatctcacgctggtgtcactatcaaaattactcatcaacattcaaagtggttgtatatgtaagagctctttgttcatctaaactatttgaaattagggcgcaaccccgttttacaatcatgcttgcataccccccccaaaaatcccctaaaaaaagagggaaagacaaaaaatacaccaacagttcgtatcattgttttgaggttttcctccagaatactacataaaagtatattaaaagaaaacacaaaacatgccagattaatgtccgttaacaGTGGTCG--TA--GATAGGACTTTGA---AGTA-TAGGCACA-AAT-T-AA-GGC-G-AGGGATCC---GGGGGGAG-G-GA-GGT-----C-GCCCAAGG--T-CCA-GGACAG-CGCCCTGG--TGG-A-----------GAGTTG----CC-A--CCCCCCCCCCCCCCCCTCCC-------GGCACAAAGAGAACAGA-TTTCATTTT--TTT------GACTA----CATCTTCTTGGGAACTAAA-------T---T----------CTACGGCACATG--TACTA-T-AC-AAAAGTTTAACG--GCT--CTCAT-TTAATAAAATTTC-G----TTAGTAG-A-AGGACAA---A-AGAGGGGAA--CA-----A------------TCCG-A--CTG---------TT--TTTACCAGAG-GTCTTTCTTGA--T-------------AATATATATTTTAATATTTTTTCAGCGTAATCA----AATCAAATG---ACGGAAAAA---ATGTATTTTT--------AAAAAATCAAACAAACAA-AA-ACA-ATGCAT----ATTTTTCTT----CCTAT---GGTGGAAAGCttccaatttgtt
gi|7 : A--TA-----A------------TAT--A--TAT---------TT--T------AAT-AT-TTTTTCAGCGT-------------AAT-CAAA--TCAA-AT------GACG-------------------------GAAAAA---ATGTATTTTT-------------------------A-AA-A-A-AT-CAA----A-------C-----------------AAA--CA--A----AAACAATGC--ATATT--TTTCTTCCTATGGTGGAAA--GCAGG-T--TATCCGGGA-AAAAA----TT---T----GG-----TATTCTG-A-TACTGAATGCCA-TAATGCA-aggttatccgggaaaaaatttggtattctgatactgaatgccataatgca
gi|8 : gtggtcgtagataggactttgaagtataggcacaaattaaggcgagggatccggggggagggaggtcgcccaaggtccaggacagcgccctggtggagagttgccacccccccccccccccctcccggcacaaagagaacagatttcatttttttgactacatcttcttgggaactaaattctacggcacatgtactatacaaaagtttaacggctctcatttaataaaatttcgttagtagaaggacaaaagaggggaacaatccgactgtttttaccagaggtctttcttgA---ACACATCTACTATTTTTCAAAAAG----------AACAA-A-ATATGCAA----A-------A----CTGCTCGAGGTGGACAGACATTACTTTACACACAC---ATAGTGCTTT-------------AGA--GCTGCCT--TCTATGTGGTGGAAT----TT---TATTGA-------ATTTTGCACTCTCGA--GCAAATAGATCG-GAAAA--TGTT-CGATTAAT-------TACGA----ACCATCTATTGCAACTTGGATAT------AT----GTCA--AATTAGTTGCTTGAAAA-A-TATGTAACTACATA--GAT----GGA-A-TGCATGGTGCCGGGGCTGCTTG-AACT--TTTCCCGAGGTAGT-GT-GT--GGGCAGGTGGGAGTTTATTTTGGC-AGGAGCTGGG-------TTGTT--CTAGT------------TCTAC--ATTGTTTTGAAATGA-CAAATAGG-TCGC-TCA-G---GAGAG---ATT-----AAGTAAGAGTTCA-A-------TATCTGCG-TAA--GGGCGGCGT
gi|9 : aatataatcGGTGA-TGCA-GGTGC-GGGG-TGCTGA-AGCTGTTCTCCT-AGG-AGT-GTCGT--GGA-AG-----------TTT--GC-G-----------------TGTT--------GTGAATGA-TTTCTG---ATTGTTTTG-AATGGTCAAG---G-TGTCTTGA-GTCAGAGAA---ATGA----AAGTAAGACTTCAGA-------TACAGGAC-TAAAGGGAAAGC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTCAAATGATGAGAAGATGTCATACGATATGAAAGCTGGGTTATGAATATTAGGCCTGTCCTTTACAAAGTGTTCCTCTATTAGACTATATCATGCTGACTATGATGGAAGTTCTTTTCTGAGGGACTGCCGCAGACAACCTTAAGTTCGAGAGAAACACCTAGGTCAATTCAACACGAAGCCTATTTCATAAAAAAACGGCTTGAAATCTACGCTATACAAGTACATGTCACTAGTCAACACTTACTCCTATATCACATTCACAGCGGCTGTATATTGTA
Unaligned ( gi|12 ): AAGATGAAATGTAACGTATAATATGCATATAATATAGGTTCCTTTAACATATCTATACTCATGCGTGTTTTTTATTTTAATTTTAGCTATGAAGTAGTGGTTGTGTATAATGAATTTAAAAGCTAGTTTTTGGTCAATTTTCCAATATGAGGCCTATTTCATAAAAAACAGCTTGGGAATGTACACAGTATACATTTCACCTAGTCAGCAT
Unaligned ( gi|13 ): GTTCTCGCGAGTGTCGTGGACGTTAGTTGCGATTGTGAAAGATTGTGATTGTTTGAATGCGCATGTCTGAGTATACAGTAGACTAATAGGAAAGAGTTGGACCATGGACACGCGTGATTTATATCTTGTTAGCATTCATCTTTATATCAAAGATCTGGTATTGTAAGTTTTTCTTGTAACATTAGTGTGCA
Unaligned ( gi|14 ): TATATTTTGTCAGCATCAACGATAAAAAGGCGAAAAAAATCTGGTATTTTATCACACTTTAATTTTTTTCTCTGTTTTATTTTCATTTTTTGGGGGGTAAAAACTATGTGTAGTGCCTAATGGCAGCTACGCCACTGA
Unaligned ( gi|15 ): GTTGACATTGCGTCACGGTCGGGTTTATATCTTGTTAGCATCAATGACTTTTGATAAGCGTAAATTTAATATTCTATTTTTTTTATTGGTAAAATTGACATGAAGGCA
Unaligned ( gi|17 ): AATGACTTTCAATAACCGAAAATATGGTATTTTATAATATGAAAATTATGTGTAGGCACGTGCCTTAAGTGCCTAATGGCAGCTACGTCACTG
Unaligned ( gi|20 ): TATTTTATTGAAAATTATATTGTAGGCACATGCCTACTCAAGGCCTAACGACGCTACGCCCT
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 11 11 11111111 1111 11111 3333333333333 55555555555555555555555555555555555555555555 111111111111111 6666666666666666666666666666666666666 1 111 1 111111 2222 111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 333333333333333333333333 111 5555555555555555555555555 1111111 44444444444444444444444444 444444444444444444444444 3333333 1 1 11 1 333333333333 1111 1111 11111 2222 1 1 222222 000000000000000000000000000000000000 111 22222 1 111 111 22222 2222222 1
lowQualScore : 4 11 55 1 7 4 77 8 4 4 4 777 99 5 5 55555555 4 3333 5 5 0 11111 2222222222222 66666666666666666666666666666666666666666666 2 5 66 888888888888888 5555555555555555555555555555555555555 0 1 66 3 111 0 3 000000 77 888 0 0 6 0000 1 222 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 666666666666666666666666 6 6 222 1 3333333333333333333333333 9999999 0 11111111111111111111111111 77 5 77 0 5 000000000000000000000000 5 5 7 5 5 99 0 3 5555555 1 2 55 0 0 33 0 111111111111 4444 3 5555 88888 0000 8 8 8 6 6 6 0 3 6 777777 3 6 111111111111111111111111111111111111 000 00000 5 111 6 1 6 6 111 33333 8 6666666 1 0 3
lowQualScore : . .. .. . . . .. . . . . ... .. . . ........ . .... . . . ..... ............. ............................................ . . .. ............... ..................................... . . .. . ... . . ...... .. ... . . . .... . ... . ...................................................................................................................................................... ... ........................ . . ... . ......................... ....... . .......................... .. . .. . . ........................ . . . . . .. . . ....... . . .. . . .. . ............ .... . .... ..... .... . . . . . . . . . ...... . . .................................... ... ..... . ... . . . . ... ..... . ....... . . .
lowQualScore : 4 00 55 3 3 0 55 0 0 0 0 000 66 7 7 99999999 0 9999 0 0 2 00000 1111111111111 66666666666666666666666666666666666666666666 5 0 99 666666666666666 6666666666666666666666666666666666666 0 0 99 4 444 0 2 888888 99 333 1 4 7 8888 0 555 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000 555555555555555555555555 7 7 555 0 8888888888888888888888888 2222222 6 77777777777777777777777777 99 7 99 1 7 777777777777777777777777 7 7 0 7 7 22 8 2 8888888 0 5 55 0 0 88 0 555555555555 8888 2 0000 00000 8888 0 0 0 7 7 7 8 3 7 000000 2 7 777777777777777777777777777777777777 777 22222 5 777 7 0 7 7 777 33333 6 0000000 2 0 2
consensus : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTAATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTT--CTAGT-GTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
Reference ( family-807 ) : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTAATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTT--CTAGT-GTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
gi|1 : GG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---GGG
gi|1 : GG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---GGTTC-GTGGGGGAACTA-A--GCCC-------------CCC-------GAC----AAAAAACAGA-TTTAATGTT--TTT------G---A----GATC---------AC-----------T---TGGGAACAATTCTA-GGCACGTG--TATTA-C-AC-AAA-TTTC---A--GGT--CTC-T-T----GAAATCTC-GATCGTTAGTAG-AAGGGAAAA---ATA----TGTA--CA-----ATCCATTGAATTCTTTT-AACCAGAGGTCTTTCTTACT------AAG-AT-TTTCTATA--TTTATTTTCAGCGTAAT-CAAA--TTAT-AT------GACG-----AGGAAAA--AAATTTCAATAAAAAAA---ATGCATTTTTTTTATTCCAGAAAA----------AA-AA-A----TGCAACA--A-------TGCCTCCTTT---GGTAAAAAGCCAT------AAAAATCC------AT--TTA-------------AAA--GCTGA-T--TATT-GGGG-GG---------------TGGGGGTGCTATTTTG-A-TATTGAATGTCA-TAATTCA-GAAAA--GGTTTCGATTAATTATAATATATCAGACAACCTT-TATT-CAA--GTGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-AGAGAAAAGATAC--A--GATATAAGGAGT-TGCA-GGTGA-GGGA--GATTG-AACTGTTTT-CCCAGG-AGT-GTCGT------ACGTGGGAGTT-GT--------------GGA-------T---------------AAT---TTTCTGCCGATTGTTTTG-AATGGTCAAA---G-TGTC-TGAGGTCA-AGAGCACATGAATTAAAGTAAGAGTTCATA-------TATtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaggtccagggcagcgccctggtggggggttcgtgggggaactaagccccccgacaaaaaacagatttaatgtttttgagatcacttgggaacaattctaggcacgtgtattacacaaatttcaggtctcttgaaatctcgatcgttagtagaagggaaaaatatgtacaatccattgaattcttttaaccagaggtctttcttactaagattttctatatttattttcagcgtaatcaaattatatgacgaggaaaaaaatttcaataaaaaaaatgcattttttttattccagaaaaaaaaatgcaacaatgcctcctttggtaaaaagccataaaaatccatttaaaagctgattattggggggtgggggtgctattttgatattgaatgtcataattcagaaaaggtttcgattaattataatatatcagacaacctttattcaagtgaatattgtcaattagaggcttgaaagagagaaaagatacagatataaggagttgcaggtgagggagattgaactgttttcccaggagtgtcgtacgtgggagttgtggataattttctgccgattgttttgaatggtcaaagtgtctgaggtcaagagcacatgaattaaagtaagagttcatatatataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|11 : ggcggttagctagggccttgggaagtataggcaccaatcaaggcgaggtgtctgggtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaGTGG-CG--TA--GCTAAGACATTGAGGATGTA-TAGGCACC-AA--T-AAAGGC-G-ACGGGTATATAGGGAGC-GCC-AA-AGG-----CCTCCAGTGG-----------------------------------G--TC-CAGGGG----CA----GC--------------------------A-----GGAAAACAGA-TTTTGTATT--TTT------G---A----GATC---------AC-----------T---------------TG-GGGACA-----A------AC-TAG--TTT---G--GGT--CTC-CTTTAATAAAATTTC-G----AGAGTAG---GCAAAAA---A-A----AGTA--CATGTGTA------------TGTTGA--TGA----------T--T------AAG-AT-TTTataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|16 : caGG-TGCTGG-AACTGTTCTCCC-AGG-AAT-GTCG-------AGG---GAGTT-ACTC--GT-GAG---------------------CTA----TGAATGG-TCTCCG---ATTGTTTTGAA-TGATCAAA---G-TGTC-TGA-GTCAGAGAG---ATG-----Aa
gi|18 : tgcaGTGG-CG--TATAACTGGGATCTTGAGGAAGTA-TATACACCAAA--T-AA-GGT-G-AGGGTTCT---GGG
gi|19 : aaaacaaaacatgccagattatattgttaacaAA--GCTGA-T--TATTTTGGT-GAAATGAGGTT---T--TGG------TATTTTG-A-TGTTGAATACAA-AAATTCATAAAAA--AGTTTTG
gi|2 : tttaaacagGTGG-TT--TA--ACTGGGATCTT-AGGAAGTA-TAT-CACC-AA--T-AC-GGT-A----GGTTC---GGGGG--GCC-AA-GTGAAAACC-T-----GG--T-CCAAGGGCAG-CGAC-TGA---GG-G-G---G-----GATGGG----CA----GCCC-------------CC---------AC----GGAAAACA-A-TTTCGTGTTTGTTT------G---AATTGGAT----------AA-----------T---T----------CTA-TGAACATGTATAATA---ACAAAAATTTT---T--AAT--TTT-C-TCATTTAAA
gi|21 : tcaaatatgaaatgtaacacacatgtatgcatataatattaggtgtcctttacaattaagagttccttatttatatatatccatgcgtgttatgattgaataaatgaaatcaaacagctagtcaatttcaacacgaagcctatttcatcaaatacgctgtactacaagtacatgtcactatatatagtcaacacttacatcacattcacagcggccggcatgtatatactgtatagactttgtatctacaactatttatgaagattagggcgaaaaacccattttactaactcatgcatgataccccccccccctaagaaaacagaaacaaacataaaataaaaaggcaccacatggaaaaaaaagcaaacccaaaaaaattaagcacaatcaatcattcatcttattgtgaggttcttttctctacgtctactattaattaagatctaacagagaaccaaaacatgcagtatagttaacaTGG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAA-GGC-G-AGGTGTCT---agaccataatatacaataaacagataagaatttgaagaaagtacagttccaatttgtttccaaaagtcttttttttttttaacaaagatttttaatatcttcagctaaacgaaatttctgaaagagctgtatcttctgggtgagatatttttacatttaattcatgttcagaaaaaagacattgct
gi|22 : GTGG-CG--TA--GCTAGGGCCTTGGGGAAGTAGTAG
gi|3 : caGGATCTTAAGGAAGT--TAGACACC-AAA-T-AA-GGTTG-AGGGGTCT---GGGGGCCGCC-AA-GAA-----C--CCAGTGGGTC-CCA-GGGCAG-CATCCT----TGG-G-G---G--AC-GCGGGG----------GACC-------------CCC--------AC----GGAAAACAGA-TT-CGTGTT--TTTAGACTTG---G----GA-C---------AA-----------A---T----------CTA-TGAACATG--TAATA-C-AC-AAAATTTT---G--
gi|3 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatct-------------AAA--GCTGA-TAATATTTGGGG-GG--------T---T--GGGG-----TATTTTT-A-TATTTAATGTCA-TGATTCA-GAAAA--aaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaaaagctgataatatttggggggttggggtatttttatatttaatgtcatgattcagaaaaaaaaattgctt
gi|4 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctggatcttaaggaagttagacaccaaataaggttgaggggtctgggggccgccaagaacccagtgggtcccagggcagcatccttgggggacgcgggggacccccacggaaaacagattcgtgtttttagacttgggacaaatctatgaacatgtaatacacaaaattttgaaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaGTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-ATGGGTCT---GTGGGTCGCCTAA-GGG-----C-TCCAGCGA--TTCCA-GGGCAA-CGCCCTGG--TGGTG-GTATG--TCAGAGGGG----CA-AT-GCCC-------------CCCCCCCTCCGAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGCACATG--TAATG-C-AC-AAAATGTT---G--GGT--CTC-C-ATAATGAAATTTC-G----TTAGAAG-A-GAGAGAA---A-A----TGTA--CA-----A------------TTTT-A--CAA---------TTG-T------AAG-AT-TTTATAAA--T-------------GAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--GC-AAGCAACTTATGCATTTTTTTTTTTTCAGAAAA----------AA-AATA-A-ATATAA----A-------T----CCTCT---GATGGAAAGCCATTA----AAAAACCCCAAACAAT--TTT-------------AAT--GCTGA-T--TATTTGGGG-GGAAT----TTTTAT--TAGG-----TATTTTG-A-TCTTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------GTATCAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGTCTGAAAGCG-AGAAAAGATACA-A--GAT---AGGAGA-TGCA-AGTGC-GGGG-TGCTTG-AGAAGTTTT-CTCAGG-AGT-GTCGT--GGGAAGGTGGGAGTT-GTTT--GC-GAGGGCGGGG-------TTGTTTGCGAGTCGTGAATGA-TTGTCTA--ATTGTCTTG-AATGATCAAA---G-TTTC-TGA-GTCAGAGAG---ATG-----AATTAAGAGTTCACA-------TGTCGGTC-TAAAGGGGAGGCGTaaaaattgctt
gi|5 : G--TA--GCTAGGGCCTTTAGGATGT--TAGGCACC-AAATT-AA-GGC-GGATGGGTCT---GTGGGTCGCA-AAAGGG-----T-TCCAGCGA--G-TCA-AGGCAAACGCCCGGGAGTGG-GAG---G--TCTGAGGGG----CA-AATGCCCG------------CCC-------GAT----GGAAAACATA-TTTCGTGTT--TTT------G---A----GATA---------AT-----------TTTCT----------CTA-GGCACATG--TAATAGCAACAAAAATTTT---G--GGTTCTTC-C-TTAATGATATTTC-GT---TAAGAAGAA-GGGAGAAGGGA-A----GAAA--AA-----A------------TGTT-A--TAA---------TT--C------AAATAT-CTTTTAA
gi|5 : AAAA----------AA-AA-A-A-ATGCCACCTGC-------T----CCTCT---GACGAAAAGCCATTA----AAAAACCTC---CATT--TTT-------------AAAATGCTGA-T--TATTTGGGG-GAGGT----GA---T--TGGG-----TATTTTG-A-T-TTGAATGCCA-TAATTCA-GAAAAAGGGTTTCGA--ACT------ATTTGAGAACACCAT-TATT-CAA--TGGA-ATTGAATAATTATAGTTAATA-TTAGAGGCTTG---T-A-AGAGAAGATACA-AGTGAG---AGGAGATTGCA-GGTGC-GGGG-TGCATGTAGCTGTTTTCCCCAAGTAGTCGCCGTTGGGA-AGGTGGGAGTT-GTTT--GCGGAGGGC-GGGGGTTTGTTTGCT--TTAGTCGTGAATGATTTTCTAC--ATTGTTTTGAAATGATCAAA---GTTTTC-TGA-GTCAGAG------------------AGAGTTCATAGCAACACTATCGGTCTTAAAGGGGAGGCGTcagcagaatgcctctcctgaagattaaaaaaaaaaaatgccacctgctcctctgacgaaaagccattaaaaaacctccatttttaaaatgctgattatttgggggaggtgattgggtattttgatttgaatgccataattcagaaaaagggtttcgaactatttgagaacaccattattcaatggaattgaataattatagttaatattagaggcttgtaagagaagatacaagtgagaggagattgcaggtgcggggtgcatgtagctgttttccccaagtagtcgccgttgggaaggtgggagttgtttgcggagggcgggggtttgtttgctttagtcgtgaatgattttctacattgttttgaaatgatcaaagttttctgagtcagagagagttcatagcaacactatcggtcttaaaggggaggcgt
gi|6 : gtagctagggcctttaggatgttaggcaccaaattaaggcggatgggtctgtgggtcgcaaaagggttccagcgagtcaaggcaaacgcccgggagtgggaggtctgaggggcaaatgcccgcccgatggaaaacatatttcgtgtttttgagataattttctctaggcacatgtaatagcaacaaaaattttgggttcttccttaatgatatttcgttaagaagaagggagaagggaagaaaaaatgttataattcaaatatcttttaacagcagaatgcctctcctgaagattaGTGG-CG--TA--TCTAGGATCTTGAGGATGTAGTAGACACC-AAA-T-AA-GGC-G-AGGG-TC----GGGGGCCGCC-CA-AGA-----C-CCCAGTGG--T-CCA-GGGTAG-CATCCTTG--AGG-G-G---G---G-GGGGGG----CACA--GCGC-------------CTC--------AC----GG-AAACAGATTTTCGTGTT--TTG------A---A----GATC---------ACTTGGGAACAAAT---T----------CTATGGAACATG--TAATA-C-A--AAAATTTT---GAAAAT--CTC-T-CTAATACAATTTCGG----TGACTAG-A-GCAAAAA---A-A----AAAAATAA-----A------------TAAT-A--CAA-------------T------AA--------ATAAA--T-------------AA---AGA---TAA-AT------AA-------A----AA--AAAAGT--ACG
gi|7 : attcaaacacacatgtagtcaatttcaacacaagccctatttatcccaaaacggcttgaaatctcacgctggtgtcactatcaaaattactcatcaacattcaaagtggttgtatatgtaagagctctttgttcatctaaactatttgaaattagggcgcaaccccgttttacaatcatgcttgcataccccccccaaaaatcccctaaaaaaagagggaaagacaaaaaatacaccaacagttcgtatcattgttttgaggttttcctccagaatactacataaaagtatattaaaagaaaacacaaaacatgccagattaatgtccgttaacaGTGGTCG--TA--GATAGGACTTTGA---AGTA-TAGGCACA-AAT-T-AA-GGC-G-AGGGATCC---GGGGGGAG-G-GA-GGT-----C-GCCCAAGG--T-CCA-GGACAG-CGCCCTGG--TGG-A-----------GAGTTG----CC-A--CCCCCCCCCCCCCCCCTCCC-------GGCACAAAGAGAACAGA-TTTCATTTT--TTT------GACTA----CATCTTCTTGGGAACTAAA-------T---T----------CTACGGCACATG--TACTA-T-AC-AAAAGTTTAACG--GCT--CTCAT-TTAATAAAATTTC-G----TTAGTAG-A-AGGACAA---A-AGAGGGGAA--CA-----A------------TCCG-A--CTG---------TT--TTTACCAGAG-GTCTTTCTTGA--T-------------AATATATATTTTAATATTTTTTCAGCGTAATCA----AATCAAATG---ACGGAAAAA---ATGTATTTTT--------AAAAAATCAAACAAACAA-AA-ACA-ATGCAT----ATTTTTCTT----CCTAT---GGTGGAAAGCttccaatttgtt
gi|7 : A--TA-----A------------TAT--A--TAT---------TT--T------AAT-AT-TTTTTCAGCGT-------------AAT-CAAA--TCAA-AT------GACG-------------------------GAAAAA---ATGTATTTTT-------------------------A-AA-A-A-AT-CAA----A-------C-----------------AAA--CA--A----AAACAATGC--ATATT--TTTCTTCCTATGGTGGAAA--GCAGG-T--TATCCGGGA-AAAAA----TT---T----GG-----TATTCTG-A-TACTGAATGCCA-TAATGCA-aggttatccgggaaaaaatttggtattctgatactgaatgccataatgca
gi|8 : gtggtcgtagataggactttgaagtataggcacaaattaaggcgagggatccggggggagggaggtcgcccaaggtccaggacagcgccctggtggagagttgccacccccccccccccccctcccggcacaaagagaacagatttcatttttttgactacatcttcttgggaactaaattctacggcacatgtactatacaaaagtttaacggctctcatttaataaaatttcgttagtagaaggacaaaagaggggaacaatccgactgtttttaccagaggtctttcttgA---ACACATCTACTATTTTTCAAAAAG----------AACAA-A-ATATGCAA----A-------A----CTGCTCGAGGTGGACAGACATTACTTTACACACAC---ATAGTGCTTT-------------AGA--GCTGCCT--TCTATGTGGTGGAAT----TT---TATTGA-------ATTTTGCACTCTCGA--GCAAATAGATCG-GAAAA--TGTT-CGATTAAT-------TACGA----ACCATCTATTGCAACTTGGATAT------AT----GTCA--AATTAGTTGCTTGAAAA-A-TATGTAACTACATA--GAT----GGA-A-TGCATGGTGCCGGGGCTGCTTG-AACT--TTTCCCGAGGTAGT-GT-GT--GGGCAGGTGGGAGTTTATTTTGGC-AGGAGCTGGG-------TTGTT--CTAGT------------TCTAC--ATTGTTTTGAAATGA-CAAATAGG-TCGC-TCA-G---GAGAG---ATT-----AAGTAAGAGTTCA-A-------TATCTGCG-TAA--GGGCGGCGT
gi|9 : aatataatcGGTGA-TGCA-GGTGC-GGGG-TGCTGA-AGCTGTTCTCCT-AGG-AGT-GTCGT--GGA-AG-----------TTT--GC-G-----------------TGTT--------GTGAATGA-TTTCTG---ATTGTTTTG-AATGGTCAAG---G-TGTCTTGA-GTCAGAGAA---ATGA----AAGTAAGACTTCAGA-------TACAGGAC-TAAAGGGAAAGC
blockSeqs : T GT TA A G A AT C A T G ATA CC T A AAAACCT T GTC A A GGAGT TGGTATGTCA CCACCCCCCCCCCCCCCCCTCCCGGCACAA G T TG AGACTTGG TTCTTGGGAACTAAATT T G TA A GCA A A AACG TC CT G T G AA C AAGAGGGGAACAATCCGACTGTTTTTACCAGAGGTCTTTCTTGATAATATATATTTTAATATTTTTTCAGCGTAATCAAATCAAATGACG CTT AAAAAATCAAACAAAC C T CA A ATTTTTCTTCCTAT TTACTTT CATATTTTTCTTCCTATGGTGG AT C AA T AATGAGGTTTTGG C C G A T AG T G C G CA C G CT T TGAATAATTATA ATA A GCG AAGT A T T C C T C C T C TGGGA T T GCGGAGGGCGGGGGTTTGTTTGCTTTAGTCG GAT CTA A TAG T G T . . A C GCAACAC T T A
blockSeqs : . . . A G . A . . . . . TC . . CT C TT . . GGT GAGGTCT CAATGCCCCCCCCCCTCCGAT G . . GAATTG ACTTGGGAACAAATT C A . A C A A GAA . AT . . T A A AATGTACAATTTTACAATTGTAAGATTTTATAAATGATCAAATTAAATGACGAAAAAATGTGC . TTTTTTTCAGAAAA . . AT G CCTGCTCCTCT TTA CAAACAATTTT . . . . AATTTTTATTAGG . . A . . . T A G G AC . . . . ATT AA A TA ATA A . . . . . C C T . GGGA T . GCGAGGGCGGGGTTGTTTGCGAGTCG GG TAC A . . T . . . . T . C . A
blockSeqs : . . . A . . A . . . . . TC . . TT C T . . TGA GGGAC CAAATGCCCGCCCGAT T . . GACTA ATTTTCT . A . A C . A G . C . . A A G AAAAAAATAAATAATACAATAAATAAATAAAGATAAATAAAAAAAAAGTACG . TATTTTTCAAAAAG . . A G AACTGCTCGA TTA ATAGTGCTTT . . . . AATTTTATTGA . . C . . . . . G . . . . . . AT A . AA AA . . . . . . C G . . GGGC T . TGGCAGGAGCTGGGTTGTTCTAGT GA TAC A . . T . . . . G . A . .
blockSeqs : . . . G . . T . . . . . CC . . CC T G . . GGT GGGG CACAGCGCCTCAC T . . GA AATT . C . A C . A T . C . . G A C . . . . A G ATCCTCT A CCATTTTT . . . . GGTGATTGGG . . A . . . . . . . . C . . . GGA . . GTGAGCTA GA CG . . . C . . . . . .
blockSeqs : . . . A . . . . . . . . GA . . CG A T . . GA GTC CAGCCCCCAC G . . GA AAAT . C . A T . A G . C . . T . G . . A . AC . . . . AAATTTGG . . C . . . . . . . . . . . . GCGTGTTG . TG . . . G . . . .
blockSeqs : . . . A . . . . . . . . . . . C . T . . T GGG GACCCCCAC G . . GA ACTT . A . C . . A G . T . . . . TTGGGG . . . . .
blockSeqs : . . . A . . . . . . . . . . . . A CAGCA . . . AA ACT . C . . . . . G
blockSeqs : . . . A . . . . . . . .
blockSeqs : . . A . . . . . . . .
blockSeqs : . .
blockSeqCons : ** CC CT****** GGG********** CAGCCCCCAC********************************** AATT********************************* **** A** A** ACTCCTCT***************** TTA**** CATANTTTT***************** AATTTTTATTGGG*********** GGGA** GCGAGGGCGGGTTGTTCTAGTG************** GA* TAC** *** *****
originalCons : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----C-TCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGG-G-G---G--TC-GAGGGG----CA-A--GCCC-------------CCC-------GAC----GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATC---------AC-----------T---T----------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTAATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-A-A-ATGCAA----A-------T----CCTCT---GGTGGAAAGCCATTA----AAAAACCCC--ACANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TT---T--TGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGT--GGG-AGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTT--CTAGT-GTGAATGA-TTTCCGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
finalCons : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AA-GGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGGCT------CCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGGGGG----------GAGGGGCAGCCCCCAC----------------------------------GGAAAACAGA-TTTCGTGTT--TTT------G---A----GATCAATT---------------------------------CTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTAATGAAATTTC-G----TNAGTAGA--GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAA--T-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA---ATGCATTTTTTTTTTTTCAGAAAA----------AA-AA-AA--ATGCAAACTCCTCT-----------------GGTGGAAAGCCATTA----AAAAACCCCATANTTTT-----------------AAA--GCTGA-T--TATTTGGGG-GGAATTTTTATTGGG-----------TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCGTGGGA--AGGTGGGAGTT-GTTTGCGAGGGCGGGTTGTTCTAGTG--------------TGAATGA-TTTCTAC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTCAAATGATGAGAAGATGTCATACGATATGAAAGCTGGGTTATGAATATTAGGCCTGTCCTTTACAAAGTGTTCCTCTATTAGACTATATCATGCTGACTATGATGGAAGTTCTTTTCTGAGGGACTGCCGCAGACAACCTTAAGTTCGAGAGAAACACCTAGGTCAATTCAACACGAAGCCTATTTCATAAAAAAACGGCTTGAAATCTACGCTATACAAGTACATGTCACTAGTCAACACTTACTCCTATATCACATTCACAGCGGCTGTATATTGTA
Unaligned ( gi|12 ): AAGATGAAATGTAACGTATAATATGCATATAATATAGGTTCCTTTAACATATCTATACTCATGCGTGTTTTTTATTTTAATTTTAGCTATGAAGTAGTGGTTGTGTATAATGAATTTAAAAGCTAGTTTTTGGTCAATTTTCCAATATGAGGCCTATTTCATAAAAAACAGCTTGGGAATGTACACAGTATACATTTCACCTAGTCAGCAT
Unaligned ( gi|13 ): GTTCTCGCGAGTGTCGTGGACGTTAGTTGCGATTGTGAAAGATTGTGATTGTTTGAATGCGCATGTCTGAGTATACAGTAGACTAATAGGAAAGAGTTGGACCATGGACACGCGTGATTTATATCTTGTTAGCATTCATCTTTATATCAAAGATCTGGTATTGTAAGTTTTTCTTGTAACATTAGTGTGCA
Unaligned ( gi|14 ): TATATTTTGTCAGCATCAACGATAAAAAGGCGAAAAAAATCTGGTATTTTATCACACTTTAATTTTTTTCTCTGTTTTATTTTCATTTTTTGGGGGGTAAAAACTATGTGTAGTGCCTAATGGCAGCTACGCCACTGA
Unaligned ( gi|15 ): GTTGACATTGCGTCACGGTCGGGTTTATATCTTGTTAGCATCAATGACTTTTGATAAGCGTAAATTTAATATTCTATTTTTTTTATTGGTAAAATTGACATGAAGGCA
Unaligned ( gi|17 ): AATGACTTTCAATAACCGAAAATATGGTATTTTATAATATGAAAATTATGTGTAGGCACGTGCCTTAAGTGCCTAATGGCAGCTACGTCACTG
Unaligned ( gi|20 ): TATTTTATTGAAAATTATATTGTAGGCACATGCCTACTCAAGGCCTAACGACGCTACGCCCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11 2222 1 22222 1111 111111 7777777777777777777777777777777777777777777777777777777777777777 111111 666666666666666666666666666666666666666666666666 1 111 1 111111 2222 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 111 11 222222222222222222222 1111111 4444444444444444444444444444 5555555555555555555555 3333333 1 1 11 1 333333333333 1111 1111 11111 2222 1 1 111111 000000000000000000000000000000000000 111 222 1 111 111 22222 2222222 1
lowQualScore : 4 11 55 1 7 4 0000 4 4 777 2 5 5 00000 3 4 3333 5 5 111111 8888888888888888888888888888888888888888888888888888888888888888 777 2 5 66 444444 999999999999999999999999999999999999999999999999 0 1 66 3 111 0 3 000000 77 888 0 0 6 0000 1 222 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33 777 0 33 7777 0 0 8 8 333333333333333333333 88 1 1 9999999 0 4444444444444444444444444444 77 5 77 0 5 6666666666666666666666 5 5 7 5 5 99 0 3 5555555 1 2 55 0 0 33 0 111111111111 4444 3 5555 88888 0000 8 8 8 6 6 6 0 3 6 000000 3 6 111111111111111111111111111111111111 000 6 444 5 111 6 1 6 6 111 33333 8 6666666 1 0 3
lowQualScore : . .. .. . . . .... . . ... . . . ..... . . .... . . ...... ................................................................ ... . . .. ...... ................................................ . . .. . ... . . ...... .. ... . . . .... . ... . ..................................................................................................................................... .. ... . .. .... . . . . ..................... .. . . ....... . ............................ .. . .. . . ...................... . . . . . .. . . ....... . . .. . . .. . ............ .... . .... ..... .... . . . . . . . . . ...... . . .................................... ... . ... . ... . . . . ... ..... . ....... . . .
lowQualScore : 4 00 55 3 3 0 5555 0 0 000 4 7 7 00000 6 0 9999 0 0 111111 2222222222222222222222222222222222222222222222222222222222222222 111 5 0 99 444444 111111111111111111111111111111111111111111111111 0 0 99 4 444 0 2 888888 99 333 1 4 7 8888 0 555 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 88 000 7 88 2222 8 2 0 0 444444444444444444444 66 4 4 2222222 6 9999999999999999999999999999 99 7 99 1 7 1111111111111111111111 7 7 0 7 7 22 8 2 8888888 0 5 55 0 0 88 0 555555555555 8888 2 0000 00000 8888 0 0 0 7 7 7 8 3 7 777777 2 7 777777777777777777777777777777777777 777 7 222 5 777 7 0 7 7 777 33333 6 0000000 2 0 2
consensus : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AAGGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----CTCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGGGGG-------G-----AGGGG---C--A---GC-CC--C------------------C---------AC--GGAAAACAGA-TTTCGTGTT--T------TTGA--------------GA--TC-----------A----------AT----TCTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTAATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAAT-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGAAAAAA--ACGCATTTTTTTTTTTTCAGAAAAAA-AA-A------A-ATGCAA---A-CTCCTCT-GGTGGAAAGCCATTA----AAAAACC-CCA--TAAT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TTTTATTGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCG-TGGGAAGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTT--CTAGT-GTGAATGA-TT-TCTGC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
Reference ( family-807 ) : GTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AAGGC-G-AGGGGTCT---GGGGGCCGCC-AA-GGG-----CTCCAGCGG--T-CCA-GGGCAG-CGCCCTGG--TGGGGG-------G-----AGGGG---C--A---GC-CC--C------------------C---------AC--GGAAAACAGA-TTTCGTGTT--T------TTGA--------------GA--TC-----------A----------AT----TCTA-GGNACATG--TAATA-C-AC-AAAATTTT---G--GGT--CTC-C-TTAATGAAATTTC-G----TNAGTAG-A-GGGAAAA---A-A----NGNA--CA-----A------------TNTT-A--CAA---------TT--T------AAG-AT-TTTNTAAAT-------------AAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--ACGGAAAAA--ATGCATTTTTTTTTTTTCAGAAAAAA-AA-A------A-ATGCAA---A-CTCCTCT-GGTGGAAAGCCATTA----AAAAACC-CCA--TANT--TTT-------------AAA--GCTGA-T--TATTTGGGG-GGAAT----TTTTATTGGG-----TATTTTG-A-TATTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------ATATNAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-A-AGAGAAGATACA-A--GAT---AGGAGA-TGCA-GGTGC-GGGG-TGCTTG-AGCTGTTTTCCCCAGG-AGT-GTCG-TGGGAAGGTGGGAGTT-GTTT--GC-GAGGGC-GGG-------TTGTT--CTAGT-GTGAATGA-TT-TCTAC--ATTGTTTTGAAATGATCAAA---G-TNTC-TGA-GTCAGAGAG---ATG-----AAGTAAGAGTTCATA-------TATCGGTC-TAAAGGGGAGGCGT
gi|1 : GG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAAGGC-G-AGGTGTCT---GGG
gi|1 : GG--T-CCA-GGGCAG-CGCCCTGG--TGGGGG-------GTTCGTGGGGGAA-CTAA---GC-CC--C------------------CCG-------AC--AAAAAACAGA-TTTAATGTT--T------TTGA--------------GA--TC-----------ACTTGGGAACAAT----TCTA-GGCACGTG--TATTA-C-AC-AAA-TTTC---A--GGT--CTC-T-T----GAAATCTC-GATCGTTAGTAG-AAGGGAAAA---ATA----TGTA--CA-----ATCCATTGAATTCTTTT-AACCAGAGGTCTTTCTTACT------AAG-AT-TTTCTATATTTATTTTCAGCGTAAT-CAAA--TTAT-AT------GACG-----AGGAAAA--AAATTTCAATAAAAAAA--ATGCATTTTTTTTATTCCAGAAAAAA-AA-ATGCAACA-ATGC-------CTCCTTT-GGTAAAAAGCCAT------AAAAATC-C------AT--TTA-------------AAA--GCTGA-T--TATT-GGGG-GG-------------TGGGGGTGCTATTTTG-A-TATTGAATGTCA-TAATTCA-GAAAA--GGTTTCGATTAATTATAATATATCAGACAACCTT-TATT-CAA--GTGA-AT------ATT---GTCA--A-TTAGAGGCTTGAAAG-AGAGAAAAGATAC--A--GATATAAGGAGT-TGCA-GGTGA-GGGA--GATTG-AACTGTTTT-CCCAGG-AGT-GTCG-T----ACGTGGGAGTT-GT--------------GGA-------T---------------AAT---TT-TCTGCCGATTGTTTTG-AATGGTCAAA---G-TGTC-TGAGGTCA-AGAGCACATGAATTAAAGTAAGAGTTCATA-------TATtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaggtccagggcagcgccctggtggggggttcgtgggggaactaagccccccgacaaaaaacagatttaatgtttttgagatcacttgggaacaattctaggcacgtgtattacacaaatttcaggtctcttgaaatctcgatcgttagtagaagggaaaaatatgtacaatccattgaattcttttaaccagaggtctttcttactaagattttctatatttattttcagcgtaatcaaattatatgacgaggaaaaaaatttcaataaaaaaaatgcattttttttattccagaaaaaaaaatgcaacaatgcctcctttggtaaaaagccataaaaatccatttaaaagctgattattggggggtgggggtgctattttgatattgaatgtcataattcagaaaaggtttcgattaattataatatatcagacaacctttattcaagtgaatattgtcaattagaggcttgaaagagagaaaagatacagatataaggagttgcaggtgagggagattgaactgttttcccaggagtgtcgtacgtgggagttgtggataattttctgccgattgttttgaatggtcaaagtgtctgaggtcaagagcacatgaattaaagtaagagttcatatatataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|11 : ggcggttagctagggccttgggaagtataggcaccaatcaaggcgaggtgtctgggtccagggtagttagcatattttatagctaaccgtctcacggtcatttttaaaacgatagaatggtttatctaGTGG-CG--TA--GCTAAGACATTGAGGATGTA-TAGGCACC-AA--TAAAGGC-G-ACGGGTATATAGGGAG-CGCC-AA-AGGC----CTCCAGTGG----------------GTCC------------------------AGGGG---C--A---G-------------------------C---------A---GGAAAACAGA-TTTTGTATT--T------TTGA--------------GA--TC-----------A----------CT------TG-GGGACA-----A------AC-TAG--TTT---G--GGT--CTC-CTTTAATAAAATTTC-G----AGAGTAG---GCAAAAA---A-A----AGTA--CATGTGTA------------TGTTGA--TGA----------T--T------AAG-AT-TTTataagtgttggcattgcgccacggttaggtttataaatgactttcattaagcgaaaatgtatggtattttaacatttcattttttgggggtaaaaattatgtgtaggca
gi|16 : caGG-TGCTGG-AACTGTTCTCCC-AGG-AAT-GTCG------AGG---GAGTT-ACTC--GT-GAG---------------------CTA----TGAATGG-TC-TCCG---ATTGTTTTGAA-TGATCAAA---G-TGTC-TGA-GTCAGAGAG---ATG-----Aa
gi|18 : tgcaGTGG-CG--TATAACTGGGATCTTGAGGAAGTA-TATACACCAAA--T-AAGGT-G-AGGGTTCT---GGG
gi|19 : aaaacaaaacatgccagattatattgttaacaAA--GCTGA-T--TATTTTGGT-GAAATGAGGTTTT----GG-----TATTTTG-A-TGTTGAATACAA-AAATTCATAAAAA--AGTTTTG
gi|2 : tttaaacagGTGG-TT--TA--ACTGGGATCTT-AGGAAGTA-TAT-CACC-AA--T-ACGGT-A----GGTTC---GGGGG--GCC-AA-GTGAAAACCT-----GG--T-CCAAGGGCAG-CGAC-TGA---GGGGG-------G-----ATGGG---C--A---GC-CC--C------------------C---------AC--GGAAAACA-A-TTTCGTGTTTGT------TTGAATTG----------GA--T------------A----------AT----TCTA-TGAACATGTATAATA---ACAAAAATTTT---T--AAT--TTT-C-TCATTTAAA
gi|21 : tcaaatatgaaatgtaacacacatgtatgcatataatattaggtgtcctttacaattaagagttccttatttatatatatccatgcgtgttatgattgaataaatgaaatcaaacagctagtcaatttcaacacgaagcctatttcatcaaatacgctgtactacaagtacatgtcactatatatagtcaacacttacatcacattcacagcggccggcatgtatatactgtatagactttgtatctacaactatttatgaagattagggcgaaaaacccattttactaactcatgcatgataccccccccccctaagaaaacagaaacaaacataaaataaaaaggcaccacatggaaaaaaaagcaaacccaaaaaaattaagcacaatcaatcattcatcttattgtgaggttcttttctctacgtctactattaattaagatctaacagagaaccaaaacatgcagtatagttaacaTGG-CGGTTA--GCTAGGGCCTTG-GGAAGTA-TAGGCACC-AA--TCAAGGC-G-AGGTGTCT---agaccataatatacaataaacagataagaatttgaagaaagtacagttccaatttgtttccaaaagtcttttttttttttaacaaagatttttaatatcttcagctaaacgaaatttctgaaagagctgtatcttctgggtgagatatttttacatttaattcatgttcagaaaaaagacattgct
gi|22 : GTGG-CG--TA--GCTAGGGCCTTGGGGAAGTAGTAG
gi|3 : caGGATCTTAAGGAAGT--TAGACACC-AAA-T-AAGGTTG-AGGGGTCT---GGGGGCCGCC-AA-GAA-----C-CCAGTGGGTC-CCA-GGGCAG-CATCCT----TGGGGGAC-----G-----CGGGG---G--A----C-CC--C------------------C---------AC--GGAAAACAGA--TTCGTGTT--TTTAGACTTGG--------------GA---C-----------A----------AA----TCTA-TGAACATG--TAATA-C-AC-AAAATTTT---G--
gi|3 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatct-------------AAA--GCTGA-TAATATTTGGGG-GG---------TTG--GGG-----TATTTTT-A-TATTTAATGTCA-TGATTCA-GAAAA--aaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaaaagctgataatatttggggggttggggtatttttatatttaatgtcatgattcagaaaaaaaaattgctt
gi|4 : ttagatgtcctttaacacgtgttccttattaatatatatccatgcttggttatgatggaagtttttttttgactgtaaatagtcaatttcaccacgaagcctatttcatcaaaaaacgacttgagatctaccgctgtactacaagtaatgtcaccagtcaacacttacatcacattcacagcggcgtatattgtagagctttgtatctaaactatttgaaatttagggcgaaaacccccgttttaacaatcatgcatgatacccccccccccaaaaaaaacccagaaacaaaaataaaataaaaagcaccccaaggaattgtttttgagggggtttttttctctcagatacaataaattatgtaatatatgaaaacatgacagttacatctaacaagtggatatatctggatcttaaggaagttagacaccaaataaggttgaggggtctgggggccgccaagaacccagtgggtcccagggcagcatccttgggggacgcgggggacccccacggaaaacagattcgtgtttttagacttgggacaaatctatgaacatgtaatacacaaaattttgaaaaaaaagtagttcaatttgtttcaccagaggtctttttataacaagatttttaataatttttttcagcgtaaaaacgaattttctagaaagaGTGG-CG--TA--GCTAGGGCCTTGAGGAAGTA-TAGGCACC-AA--T-AAGGC-G-ATGGGTCT---GTGGGTCGCCTAA-GGG-----CTCCAGCGA--TTCCA-GGGCAA-CGCCCTGG--TGGTGGTATGTCAG-----AGGGG---C--AAT-GC-CC--C------------------CCCCCCTCCGAT--GGAAAACATA-TTTCGTGTT--T------TTGA--------------GA--TC-----------A----------CT----TCTA-GGCACATG--TAATG-C-AC-AAAATGTT---G--GGT--CTC-C-ATAATGAAATTTC-G----TTAGAAG-A-GAGAGAA---A-A----TGTA--CA-----A------------TTTT-A--CAA---------TTG-T------AAG-AT-TTTATAAAT-------------GAT-CAAA--TTAA-AT------GACG-----A----AA--AAATGT--GCAAGCAACTTATGCATTTTTTTTTTTTCAGAAAAAA-AATA------A-ATATAA---A--TCCTCT-GATGGAAAGCCATTA----AAAAACC-CCAAACAAT--TTT-------------AAT--GCTGA-T--TATTTGGGG-GGAAT----TTTTATTAGG-----TATTTTG-A-TCTTGAATGCCA-TAATTCA-GAAAA--GGTTTCGATTAAT------GTATCAGACAACCAT-TATT-CAA--TGGA-AT------ATT---GTCA--A-TTAGAGGTCTGAAAGCG-AGAAAAGATACA-A--GAT---AGGAGA-TGCA-AGTGC-GGGG-TGCTTG-AGAAGTTTT-CTCAGG-AGT-GTCG-TGGGAAGGTGGGAGTT-GTTT--GC-GAGGGCGGGG-------TTGTTTGCGAGTCGTGAATGA-TTGTCTA---ATTGTCTTG-AATGATCAAA---G-TTTC-TGA-GTCAGAGAG---ATG-----AATTAAGAGTTCACA-------TGTCGGTC-TAAAGGGGAGGCGTaaaaattgctt
gi|5 : G--TA--GCTAGGGCCTTTAGGATGT--TAGGCACC-AAATT-AAGGC-GGATGGGTCT---GTGGGTCGCA-AAAGGG-----TTCCAGCGA--G-TCA-AGGCAAACGCCCGGGAGTGGGAG-------GTCTG-AGGGG---C--AAATGC-CCGCC------------------CG--------AT--GGAAAACATA-TTTCGTGTT--T------TTGA--------------GA--T------------A----------ATTTTCTCTA-GGCACATG--TAATAGCAACAAAAATTTT---G--GGTTCTTC-C-TTAATGATATTTC-GT---TAAGAAGAA-GGGAGAAGGGA-A----GAAA--AA-----A------------TGTT-A--TAA---------TT--C------AAATAT-CTTTTAA
gi|5 : AAAAAA-AA-A------A-ATGCCACCTG-CTCCTCT-GACGAAAAGCCATTA----AAAAACCTCCA--T--T--TTT-------------AAAATGCTGA-T--TATTTGGGG-GAGGT----G---ATTGGG-----TATTTTG-A-T-TTGAATGCCA-TAATTCA-GAAAAAGGGTTTCGA--ACT------ATTTGAGAACACCAT-TATT-CAA--TGGA-ATTGAATAATTATAGTTAATA-TTAGAGGCTTG---T-A-AGAGAAGATACA-AGTGAG---AGGAGATTGCA-GGTGC-GGGG-TGCATGTAGCTGTTTTCCCCAAGTAGTCGCCGTTGGGAAGGTGGGAGTT-GTTT--GCGGAGGGC-GGGGGTTTGTTTGCT--TTAGTCGTGAATGATTT-TCTAC--ATTGTTTTGAAATGATCAAA---GTTTTC-TGA-GTCAGAG------------------AGAGTTCATAGCAACACTATCGGTCTTAAAGGGGAGGCGTcagcagaatgcctctcctgaagattaaaaaaaaaaaatgccacctgctcctctgacgaaaagccattaaaaaacctccatttttaaaatgctgattatttgggggaggtgattgggtattttgatttgaatgccataattcagaaaaagggtttcgaactatttgagaacaccattattcaatggaattgaataattatagttaatattagaggcttgtaagagaagatacaagtgagaggagattgcaggtgcggggtgcatgtagctgttttccccaagtagtcgccgttgggaaggtgggagttgtttgcggagggcgggggtttgtttgctttagtcgtgaatgattttctacattgttttgaaatgatcaaagttttctgagtcagagagagttcatagcaacactatcggtcttaaaggggaggcgt
gi|6 : gtagctagggcctttaggatgttaggcaccaaattaaggcggatgggtctgtgggtcgcaaaagggttccagcgagtcaaggcaaacgcccgggagtgggaggtctgaggggcaaatgcccgcccgatggaaaacatatttcgtgtttttgagataattttctctaggcacatgtaatagcaacaaaaattttgggttcttccttaatgatatttcgttaagaagaagggagaagggaagaaaaaatgttataattcaaatatcttttaacagcagaatgcctctcctgaagattaGTGG-CG--TA--TCTAGGATCTTGAGGATGTAGTAGACACC-AAA-T-AAGGC-G-AGGG-TC----GGGGGCCGCC-CA-AGA-----CCCCAGTGG--T-CCA-GGGTAG-CATCCTTG--AGGGGG-------G-----GGGGGGCAC--A---GCGCC--T------------------C---------AC--GG-AAACAGATTTTCGTGTT--T------TGAA--------------GA--TCACTTGGGAACAA----------AT----TCTATGGAACATG--TAATA-C-A--AAAATTTT---GAAAAT--CTC-T-CTAATACAATTTCGG----TGACTAG-A-GCAAAAA---A-A----AAAAATAA-----A------------TAAT-A--CAA-------------T------AA--------ATAAAT-------------AA---AGA---TAA-AT------AA-------A----AA--AAAAGT--ACG
gi|7 : attcaaacacacatgtagtcaatttcaacacaagccctatttatcccaaaacggcttgaaatctcacgctggtgtcactatcaaaattactcatcaacattcaaagtggttgtatatgtaagagctctttgttcatctaaactatttgaaattagggcgcaaccccgttttacaatcatgcttgcataccccccccaaaaatcccctaaaaaaagagggaaagacaaaaaatacaccaacagttcgtatcattgttttgaggttttcctccagaatactacataaaagtatattaaaagaaaacacaaaacatgccagattaatgtccgttaacaGTGGTCG--TA--GATAGGACTTTGA---AGTA-TAGGCACA-AAT-T-AAGGC-G-AGGGATCC---GGGGGGAG-G-GA-GGT-----CGCCCAAGG--T-CCA-GGACAG-CGCCCTGG--T--GGA-------G-----AGTTG---C--C---AC-CC--CCCCCCCCCCCCCTCCCGGC---------ACAAAGAGAACAGA-TTTCATTTT--T------TTGACTACATCTTCTTGGGAACTA-----------A----------AT----TCTACGGCACATG--TACTA-T-AC-AAAAGTTTAACG--GCT--CTCAT-TTAATAAAATTTC-G----TTAGTAG-A-AGGACAA---A-AGAGGGGAA--CA-----A------------TCCG-A--CTG---------TT--TTTACCAGAG-GTCTTTCTTGAT-------------AATATATATTTTAATATTTTTTCAGCGTAATCA----AATCAAATG---ACGGAAAAA--ATGTATTTTT---------------A-AA-A------A-AT-CAA---A-C------------AAA--CA--A----AAACAAT-GCA--TATT--TTTCTTCCTATGGTGGAAA--GCAGG-T--TATCCGGGA-AAAA---------ATTTGG-----TATTCTG-A-TACTGAATGCCA-TAATGCA-ttccaatttgtt
gi|8 : A--ACACATCTACTATTTTTCAAAAAGAACAA-A------ATATGCAA---AACTGCTCGAGGTGGACAGACATTACTTTACACACA-C-A--TAGTGCTTT-------------AGA--GCTGCCT--TCTATGTGGTGGAAT----TTT-ATTGA-------ATTTTGCACTCTCGA--GCAAATAGATCG-GAAAA--TGTT-CGATTAAT-------TACGA----ACCATCTATTGCAACTTGGATAT------AT----GTCA--AATTAGTTGCTTGAAAA-A-TATGTAACTACATA--GAT----GGA-A-TGCATGGTGCCGGGGCTGCTTG-AACT--TTTCCCGAGGTAGT-GT-G-TGGGCAGGTGGGAGTTTATTTTGGC-AGGAGCTGGG-------TTGTT--CTAGT-------------TCTAC--ATTGTTTTGAAATGA-CAAATAGG-TCGC-TCA-G---GAGAG---ATT-----AAGTAAGAGTTCA-A-------TATCTGCG-TAA--GGGCGGCGT
gi|9 : aatataatcGGTGA-TGCA-GGTGC-GGGG-TGCTGA-AGCTGTTCTCCT-AGG-AGT-GTCG-TGGAA------------GTTT--GC-G-----------------TGTT--------GTGAATGA-TT-TCTG---ATTGTTTTG-AATGGTCAAG---G-TGTCTTGA-GTCAGAGAA---ATGA----AAGTAAGACTTCAGA-------TACAGGAC-TAAAGGGAAAGC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTCAAATGATGAGAAGATGTCATACGATATGAAAGCTGGGTTATGAATATTAGGCCTGTCCTTTACAAAGTGTTCCTCTATTAGACTATATCATGCTGACTATGATGGAAGTTCTTTTCTGAGGGACTGCCGCAGACAACCTTAAGTTCGAGAGAAACACCTAGGTCAATTCAACACGAAGCCTATTTCATAAAAAAACGGCTTGAAATCTACGCTATACAAGTACATGTCACTAGTCAACACTTACTCCTATATCACATTCACAGCGGCTGTATATTGTA
Unaligned ( gi|12 ): AAGATGAAATGTAACGTATAATATGCATATAATATAGGTTCCTTTAACATATCTATACTCATGCGTGTTTTTTATTTTAATTTTAGCTATGAAGTAGTGGTTGTGTATAATGAATTTAAAAGCTAGTTTTTGGTCAATTTTCCAATATGAGGCCTATTTCATAAAAAACAGCTTGGGAATGTACACAGTATACATTTCACCTAGTCAGCAT
Unaligned ( gi|13 ): GTTCTCGCGAGTGTCGTGGACGTTAGTTGCGATTGTGAAAGATTGTGATTGTTTGAATGCGCATGTCTGAGTATACAGTAGACTAATAGGAAAGAGTTGGACCATGGACACGCGTGATTTATATCTTGTTAGCATTCATCTTTATATCAAAGATCTGGTATTGTAAGTTTTTCTTGTAACATTAGTGTGCA
Unaligned ( gi|14 ): TATATTTTGTCAGCATCAACGATAAAAAGGCGAAAAAAATCTGGTATTTTATCACACTTTAATTTTTTTCTCTGTTTTATTTTCATTTTTTGGGGGGTAAAAACTATGTGTAGTGCCTAATGGCAGCTACGCCACTGA
Unaligned ( gi|15 ): GTTGACATTGCGTCACGGTCGGGTTTATATCTTGTTAGCATCAATGACTTTTGATAAGCGTAAATTTAATATTCTATTTTTTTTATTGGTAAAATTGACATGAAGGCA
Unaligned ( gi|17 ): AATGACTTTCAATAACCGAAAATATGGTATTTTATAATATGAAAATTATGTGTAGGCACGTGCCTTAAGTGCCTAATGGCAGCTACGTCACTG
Unaligned ( gi|20 ): TATTTTATTGAAAATTATATTGTAGGCACATGCCTACTCAAGGCCTAACGACGCTACGCCCT