lowQualScore : 22222 1 1111111111111111
lowQualScore : 3 3 33333 3 6666 3 66 2 8888888888888888
lowQualScore : . . ..... . .... . .. . ................
lowQualScore : 6 6 33333 1 5555 6 11 7 7777777777777777
consensus : NNAAAGC-A-AT---A-CAAGCT-GTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACCG
Reference ( gi|4 ) : AAAAAGC-A-AT---C-CAAGCT-GTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAA--------T------TAACACCTACCG
gi|2 : AAAGC-A-ATACGT-CAAACT-GTAACTG----ACGGCATTTT-TTCA-ACTACT-CAAATATGCACAAG--------TTACATGTAACATCTACCG
gi|6 : AAAGC-A-AT---G-ACAGCTTGTAACCG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAAat
gi|7 : tAAATC-A-AT---A-CAAGCG-GTAACTG----AGGGCATTTTT--CA-CCTACA-CAGATATGCACAAG--------T------TAACACCTACCGactactt
gi|5 : ttAAAGCGA-AT---G-CAAGCT-GTAACTG----AAGGCA-TTTTTTCACACTACT-CAAATA--CACAAG--------T------TAAC-CCTACCG
gi|12 : gtAAAGC-A-AT---A-CGAGCT-GTAACTG----ACAACATTTTTTTT---CTACT-CAAATATGCACAAG--------T------at
gi|8 : ttAAATC-A-AT---A-CAAGCT-GTAACTG----ACGGCA--TATTTCA-CCTACA-CAAATATGTACCAG--------T------TAGGACCTACC
gi|13 : AAAAC-A-AT---A-CAAGCC-GTAACTG----ACGACA---TTTTCA-TCCACT-CGAATATGCGC
gi|1 : tAAAGC-A-ATA--CACAAGCT-GTAACTG----ACGGCA--GTTTTCA-TCTTAT-CGAATATGCACCAGTTTAATTCT------TAGCACCTACCcactt
gi|9 : ttAAAGC-ATCT---C-GGAGC--G-AACTG----AAA--ATTTTTTTC----TACT-CAAATATGCACAAG--------T------TA--ATCTACCGaat
gi|14 : ttAAGA-A-AT---A-CAAGCT-GTAACTG----ACGGCA-TTTTTTCA-ACCACT-ata
gi|3 : AGC-A-AT---A-CAAGCT-GTAACTGCATGACGGC-TTTTTTTCA-GGTACT-CAAATATGCACAAG--------T------TAACACCTACCGacacctaccgata
gi|15 : at-GTAACTG----ACGGCATTTT-TTCA-ACTACT-CAAATATGCAGAAG--------T------TAACACCTACTGat
gi|10 : -GTAACTG----ATAGTA--TTTTTCA-A-TACCACAAGTATGCTCA
gi|16 : ggcgtccattacaacaatagtaacgTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACC
gi|17 : TTTTTCA-CCTACA-CAGATATGCACAAG--------T------TAACACCTACCGtat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TAGGAATATAGTACAATGACTATTGATTTCTCTTTCTTACTTAGTTAAAAAGTTGACATGCA
Unaligned ( gi|18 ): TTGTCTTCCTTTTTGCTTACTCCACAAATTCTTTAG
Alignments
lowQualScore : 1 11111111
lowQualScore : 3 3 555 44 6666 2 55 2 11111111 888888
lowQualScore : . . ... .. .... . .. . ........ ......
lowQualScore : 3 3 888 66 1111 0 22 5 22222222 888888
consensus : NNAAAGC-AAT-AC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACCG
Reference ( family-75 ) : NNAAAGC-AAT-AC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACCG
gi|1 : AAAGC-AAT-AC---ACAAGCTGTAACTG----ACGGCA--GTTTTCA-TCTTAT-CGAATATGCACCAGTTTAATTCT------TAGCACCTACC
gi|10 : ttAAC-AAT-AG---T--AACGGTAACTG----ATAGTA--TTTTTCA-A-TACCACAAGTATGCTCAaat
gi|12 : ggcgtccattacAAAGC-AAT-AC---G--AGCTGTAACTG----ACAACATTTTTTTT---CTACT-CAAATATGCACAAG--------T------
gi|13 : ttAAAAC-AAT-AC---A--AGCCGTAACTG----ACGACA---TTTTCA-TCCACT-CGAATATGCGC
gi|14 : tAAGA-AAT-AC---A--AGCTGTAACTG----ACGGCA-TTTTTTCA-ACCACT-cactt
gi|15 : GTAACTG----ACGGCATTTT-TTCA-ACTACT-CAAATATGCAGAAG--------T------TAACACCTACTGacacctaccgata
gi|16 : TTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACC
gi|17 : TTTTTCA-CCTACA-CAGATATGCACAAG--------T------TAACACCTACCGtat
gi|2 : AAAGC-AAT-ACGTCA--AACTGTAACTG----ACGGCATTTT-TTCA-ACTACT-CAAATATGCACAAG--------TTACATGTAACATCTACCGat
gi|3 : AGC-AAT-AC---A--AGCTGTAACTGCATGACGGC-TTTTTTTCA-GGTACT-CAAATATGCACAAG--------T------TAACACCTACCGat
gi|4 : atAAAGC-AAT-CC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAA--------T------TAACACCTACCGat
gi|5 : aaAAAGCGAAT-GC---A--AGCTGTAACTG----AAGGCA-TTTTTTCACACTACT-CAAATA--CACAAG--------T------TAAC-CCTACCG
gi|6 : gtAAAGC-AATGAC---A--GCTTGTAACCG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAAat
gi|7 : tAAATC-AAT-AC---A--AGCGGTAACTG----AGGGCATTTTT--CA-CCTACA-CAGATATGCACAAG--------T------TAACACCTACCGactactt
gi|8 : ttAAATC-AAT-AC---A--AGCTGTAACTG----ACGGCA--TATTTCA-CCTACA-CAAATATGTACCAG--------T------TAGGACCTACC
gi|9 : AACTG----AAA--ATTTTTTTC----TACT-CAAATATGCACAAG--------T------TA--ATCTACCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAGGAATATAGTACAATGACTATTGATTTCTCTTTCTTACTTAGTTAAAAAGTTGACATGCA
Unaligned ( gi|18 ): TTGTCTTCCTTTTTGCTTACTCCACAAATTCTTTAG
Alignments
lowQualScore : 1 11111111
lowQualScore : 3 3 555 44 6666 2 55 2 11111111 888888
lowQualScore : . . ... .. .... . .. . ........ ......
lowQualScore : 3 3 888 66 1111 0 22 5 22222222 888888
consensus : NNAAAGC-AAT-AC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACCG
Reference ( family-75 ) : NNAAAGC-AAT-AC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACCG
gi|1 : AAAGC-AAT-AC---ACAAGCTGTAACTG----ACGGCA--GTTTTCA-TCTTAT-CGAATATGCACCAGTTTAATTCT------TAGCACCTACC
gi|10 : ttAAC-AAT-AG---T--AACGGTAACTG----ATAGTA--TTTTTCA-A-TACCACAAGTATGCTCAaat
gi|12 : ggcgtccattacAAAGC-AAT-AC---G--AGCTGTAACTG----ACAACATTTTTTTT---CTACT-CAAATATGCACAAG--------T------
gi|13 : ttAAAAC-AAT-AC---A--AGCCGTAACTG----ACGACA---TTTTCA-TCCACT-CGAATATGCGC
gi|14 : tAAGA-AAT-AC---A--AGCTGTAACTG----ACGGCA-TTTTTTCA-ACCACT-cactt
gi|15 : GTAACTG----ACGGCATTTT-TTCA-ACTACT-CAAATATGCAGAAG--------T------TAACACCTACTGacacctaccgata
gi|16 : TTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACC
gi|17 : TTTTTCA-CCTACA-CAGATATGCACAAG--------T------TAACACCTACCGtat
gi|2 : AAAGC-AAT-ACGTCA--AACTGTAACTG----ACGGCATTTT-TTCA-ACTACT-CAAATATGCACAAG--------TTACATGTAACATCTACCGat
gi|3 : AGC-AAT-AC---A--AGCTGTAACTGCATGACGGC-TTTTTTTCA-GGTACT-CAAATATGCACAAG--------T------TAACACCTACCGat
gi|4 : atAAAGC-AAT-CC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAA--------T------TAACACCTACCGat
gi|5 : aaAAAGCGAAT-GC---A--AGCTGTAACTG----AAGGCA-TTTTTTCACACTACT-CAAATA--CACAAG--------T------TAAC-CCTACCG
gi|6 : gtAAAGC-AATGAC---A--GCTTGTAACCG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAAat
gi|7 : tAAATC-AAT-AC---A--AGCGGTAACTG----AGGGCATTTTT--CA-CCTACA-CAGATATGCACAAG--------T------TAACACCTACCGactactt
gi|8 : ttAAATC-AAT-AC---A--AGCTGTAACTG----ACGGCA--TATTTCA-CCTACA-CAAATATGTACCAG--------T------TAGGACCTACC
gi|9 : AACTG----AAA--ATTTTTTTC----TACT-CAAATATGCACAAG--------T------TA--ATCTACCG
blockSeqs : G G GTC . CATG T CA A . TACATG
blockSeqs : . . . . . T A . . .
blockSeqs : . . . . . T T . . .
blockSeqs : . . . . . T A . . .
blockSeqs : . . . . . T A . . .
blockSeqs : . . . . . T A . . .
blockSeqs : . . . . . T C . . .
blockSeqs : . . . . . T A . . .
blockSeqs : . . . . . . G . . .
blockSeqs : . . . . . . A . . .
blockSeqs : . . . . . . A . . .
blockSeqs : . . C . . .
blockSeqs : . . C .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : ** ********
originalCons : NNAAAGC-AAT-AC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACCG
finalCons : NNAAAGC-AAT-AC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAGGAATATAGTACAATGACTATTGATTTCTCTTTCTTACTTAGTTAAAAAGTTGACATGCA
Unaligned ( gi|18 ): TTGTCTTCCTTTTTGCTTACTCCACAAATTCTTTAG
Alignments
lowQualScore : 1 11111111
lowQualScore : 3 3 555 44 6666 2 55 2 11111111 888888
lowQualScore : . . ... .. .... . .. . ........ ......
lowQualScore : 3 3 888 66 1111 0 22 5 22222222 888888
consensus : NNAAAGC-AAT-AC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACCG
Reference ( family-75 ) : NNAAAGC-AAT-AC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACCG
gi|1 : AAAGC-AAT-AC---ACAAGCTGTAACTG----ACGGCA--GTTTTCA-TCTTAT-CGAATATGCACCAGTTTAATTCT------TAGCACCTACC
gi|10 : ttAAC-AAT-AG---T--AACGGTAACTG----ATAGTA--TTTTTCA-A-TACCACAAGTATGCTCAaat
gi|12 : ggcgtccattacAAAGC-AAT-AC---G--AGCTGTAACTG----ACAACATTTTTTTT---CTACT-CAAATATGCACAAG--------T------
gi|13 : ttAAAAC-AAT-AC---A--AGCCGTAACTG----ACGACA---TTTTCA-TCCACT-CGAATATGCGC
gi|14 : tAAGA-AAT-AC---A--AGCTGTAACTG----ACGGCA-TTTTTTCA-ACCACT-cactt
gi|15 : GTAACTG----ACGGCATTTT-TTCA-ACTACT-CAAATATGCAGAAG--------T------TAACACCTACTGacacctaccgata
gi|16 : TTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAACACCTACC
gi|17 : TTTTTCA-CCTACA-CAGATATGCACAAG--------T------TAACACCTACCGtat
gi|2 : AAAGC-AAT-ACGTCA--AACTGTAACTG----ACGGCATTTT-TTCA-ACTACT-CAAATATGCACAAG--------TTACATGTAACATCTACCGat
gi|3 : AGC-AAT-AC---A--AGCTGTAACTGCATGACGGC-TTTTTTTCA-GGTACT-CAAATATGCACAAG--------T------TAACACCTACCGat
gi|4 : atAAAGC-AAT-CC---A--AGCTGTAACTG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAA--------T------TAACACCTACCGat
gi|5 : aaAAAGCGAAT-GC---A--AGCTGTAACTG----AAGGCA-TTTTTTCACACTACT-CAAATA--CACAAG--------T------TAAC-CCTACCG
gi|6 : gtAAAGC-AATGAC---A--GCTTGTAACCG----ACGGCATTTTTTTCA-ACTACT-CAAATATGCACAAG--------T------TAAat
gi|7 : tAAATC-AAT-AC---A--AGCGGTAACTG----AGGGCATTTTT--CA-CCTACA-CAGATATGCACAAG--------T------TAACACCTACCGactactt
gi|8 : ttAAATC-AAT-AC---A--AGCTGTAACTG----ACGGCA--TATTTCA-CCTACA-CAAATATGTACCAG--------T------TAGGACCTACC
gi|9 : AACTG----AAA--ATTTTTTTC----TACT-CAAATATGCACAAG--------T------TA--ATCTACCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAGGAATATAGTACAATGACTATTGATTTCTCTTTCTTACTTAGTTAAAAAGTTGACATGCA
Unaligned ( gi|18 ): TTGTCTTCCTTTTTGCTTACTCCACAAATTCTTTAG