lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111111111 22222
lowQualScore : 1 1 3333 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3333 99999999999 333 44 66666 11111 1 1
lowQualScore : . . .... . ........................................................................................................................ .... ........... ... .. ..... ..... . .
lowQualScore : 7 7 5555 7 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5555 11111111111 000 11 66666 66666 9 9
consensus : AGCT-GCAA-TAATGTA----GCCCT-CTC----C---NTT--TTTTTT----ATT-----T---T----T----TTTT-T-----TT----TT---T-CGGG---------AGAG------GCT-CCC------AA-CGTCA-------GAA---TAA----------AAA---A--AAA--T-CGGAGAGGGC-T---ACATTA-TTGC-AGCT
Reference ( gi|1 ) : AGCT-GCAA-TAATGTA----GCCCT-CTC----C---CTT--TTTTTT----ATT-----T---T----T----TTTTTT-----TT----TT---TATGGG---------AGAG------GCT-CCCGT----AA-CGTCA-------GAA---TAA----------GAA---A--AAA--T-CGGAGAGGGC-A---ACATTA-TTGC-AGCT
gi|2 : AGCT-GCAA-TAATGTA----ACCCT-CTC----C---C----GTTTTT----ATT-----TCCGT----TTGGGTTTTTT-----TT----TT---TTTGG----------------------T-CCCGTA---AA-CGTCA-------GAA---TAA-----------AA---A--AAA--T-CAGAGAGGGC-T---ACATTA-TTGC-AGCT
gi|2 : AGCT-GCAA-TAATGTA----GCCCT-CTC-----------------TG----ATT-----T---T----T----TTTATT-----CTGACGTT---TACGGGACCAAAAAAAAAA------AAA-CCCA-----AA-CG--G-------AAA---T--------------A---A--AAA--C-GGGAGAGGGT-T---ACATTA-TTGC-AGCT
gi|5 : AGCT-GCAA-TAATGCA----GCCCT-CTC----C----------TTTT----ATA-----T---T----T----TTATTT-----TT-------------GG---------GGCC------TCT-CCCGTT---AA-CATCA-------GAA---TAA----------AAA---AG-AAA--T-CGGAAAGGGT-T---ACATTA-TTGC-AGCT
gi|5 : AGCT-GCAA-TAATGTA----ACCCT-TTC----C---GAT--TTCTT------TT-----T---T----A----TTCTGA-----TG----TT---AACGGG---------AGAG------GC--CCCA------------A-------AAA---TAA----------AAATATA--AAA-----GGAGAGGGC-T---GCATTA-TTGC-AGCT
gi|10 : AGCT-GCAA-TAATGTA----ACCCT-TTC----C---CTT--T------------------------------------T-----TT----TT---T---------------GAA-------------------AA-CGTCA-------GAA---TAA----------AAA---A--AAA--T-CGGAGAGGGC-T---ACATTA-TTGC-AGCT
gi|10 : AGCT-GCAA-TAATGTA----GCCCT-CTC----C---G--------------ATT-----T---T----T----TTTTAT-----TC----T--------------------GAC------GTT-T-------------TCA-------AAA-----------------AA---A--AAG-----GGAAAGGGT-T---ACATTA-TTGC-AGCT
gi|11 : AGCT-GCAA-TAATGTA----GCCTT-CTC----C---CTT---------------------------------------T-----TT----TT---CGTG----------------------------------AA-CGTC--------GAA---TAA----------AAA---A--AAA--T-CAAGTAGGGC-T---ACATTA-TTGC-AGCT
gi|11 : AGCT-GCAA-TAATGTA----GCCCTACT------------------TG----ATT-----T---T----T----TTTTAT-----TC-------------------------GAC------GTT-C---------A-CG------------------------------AA---A--AAA--A-GGGAGAAGGC-T---ACATTA-TTGC-AGCT
gi|7 : AGCT-A-AA-TAATGTACGTAGCCCT-CTA----CGA-TTT--TTTTTT----ATT-----C---TGCCGT----TTTCGT-----TT----CT-----------------------------CT-CCC------AA-----A-------AAA---TAA----------AAA---A-----------GAGAGGGC-T---AAATCA-TTGC-
gi|3 : AGCT-GCAA-TAATGTA----CCCCC-CCC----C---CTT--TTTTTTTTAAATT-----T---C----C----TTCT--------------------------------------------CT-CCCAA----AATCGTCA-------GAA---CGGGGCCCTCGGTGAA---A--AAA--T-TGGGGAGGGC-T---ACATTA-TTGC-
gi|4 : AGCTTGCAAATAATGT-----GCCCT-CTC----C---CTT--TTGTTG----G---------------------------------------G---GGTGGG---------GGGGGGGGGGGCTTCCCGT-----A-TGTCA-------GAT---CAA----------AAA---A--CAA--T-CAGAGAGGGC-T---ACATTA-TTGC-AGCT
gi|4 : AGCT-GCAA-TAATGTA----GCCCT-CTC-----------------TG----ATT-----G---T----T----TTTTGA-----TC----TGACATACGGG---------A-AG------CCC-CCCCC----CC-CCCCACCCC---CAA---CAA----------AAG--------------GGAGAGGGC-----ACATTATTTGCAAGCT
gi|6 : AGCT-GCAA-TAATGTA----GCCCT-CTC----C-------------------TT-----T---T----T----TTTTTT-----TT----TT---TAC-----------------------CT-CCCCCAAAAAA-CG-CG-------GAG----AA----------AAA---A--AAC--T-CGGAGAAG
gi|13 : AGCT-GCAA-TAATGTA----GCCCT-CTT----CGAATTTTATTTTTT----ATT-----C---T----aacccctaccttaatccagc
gi|8 : tagccctcgcacgAGCA-ACAA-TAATGTA----GCCCT-CTC----CAA-TTA--TTTTTT----ATaa
gi|12 : tgtaataacgtagacccctccaactttgttttttctccagaaaatgttgacAGCT-GCAA-TGATGTA----GCCCT-CTG----A-----T--TTTTTT----ATT-----T---a
gi|16 : ggctgcaataatgtcatttttttAGCT-GTAA-TAATGTA----GCCCT-CTT----CG--ATA--TTTTTT----a
gi|14 : GCT-GCAA-TAATGCA----GCCCT-CTCAGATT---TTT--TTTTTT----ATT-----C---T----aatcg
gi|17 : tttttctccaaaatgtcCT-GCAA-TAATGTC----GCCCT-CTC----C---GAT--TTTT
gi|7 : T-GCAA-TGATTTA----GCCCT-CTC-------------TTTTTT----ATT-----T---T----T----T------------------------GGG---------AGAG------AA---ACGA----AAACGGCA-------GAA---TAA----------AAA---A--AAA--T-CGTAGAGGGCTACGTACATTA-TT-T-AGCTata
gi|3 : T-GCAA-TAATGTA----GCCCT-CCC----C---AAT--TTTTTC----ACCGAGGGC---C----C----CGTTCTGACGATT----T------TGGG---------AGAG-------------------AA-----G-------GAAATTTAA----------AAA---A--AAA--A-GGGGGGGGGG-T---ACATTA-TTGC-AGCT
gi|8 : T-GTAA-TAACGTA----GACCC-CTC----C---A--------------ACT-----T---T----G----TTTTTT-----CT----CC------------------AGAA-------------------AA-TGTTG-------ACA---TAA----------AAA---A--TAA--T-TGGAGAGGGC-T---ACATTA-TTGT-TGCT
gi|9 : -GCAA-TAATTTA----GCCCT-CTC----C---CCT--TTTTTT----G---------------------------------------G---TAGGGG---------GGGG------GTT-A--------AA-CGTCA-------GAA---TAA-----------AA---A--AAA--T-CAGa
gi|15 : -GCAG-TAGTGTA----GCCCC-TTT----T---TTT--TTTTTT----TTT-----T---T----T----TTTTTT-----TT----TT---TTTTGG---------AGAG------Gtgtgatttcatgatacagct
gi|6 : T-----T---T----T----TTTTCTCCGCGTT----TT---T-TGGG---------GGAG------G-------T----AA-----A-------AAA---AAA----------AAA---A--AAA-----GGAGAGGGC-T---ACATTA-TTGC-AGCT
gi|12 : G------GCT-GCAAT----AA-TGTCATTTTTTTAAA---TAA------------A---A--AAA--T-C--AGAGGGC-T---ACATCA-TTGC-AGCTctcggagaagaacccctaccttaatccagc
gi|13 : ------GCC-CTCGC----A--CG--A-------GAA---TAA----------AAA---ATAAAA--TTCGAAGAGGGC-T---ACATTA-TTGC-AGCTa
gi|14 : ta----AA-TGTCA-------GAA---TAA----------AAA---A--AAAAAT-CTGAGAGGGC-T---GCATTA-TTGC-AGCaa
gi|16 : tttttctccaaA----------AAA---A--ATA--T-CGAAGAGGGC-T---ACATTA-TTAC-AGCT
gi|17 : A---A--AAA--T-CGGAGAGGGC-G---ACATTA-TTGC-AGaatcg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777 1111111111
lowQualScore : 3 3 3 333333333333333333333333333333333333333333333333333333333333333333333333 3 999 1111111111 33 55 2 5555 5555
lowQualScore : . . . ........................................................................ . ... .......... .. .. . .... ....
lowQualScore : 3 3 3 111111111111111111111111111111111111111111111111111111111111111111111111 3 222 7777777777 44 99 7 7777 7777
consensus : AGCT-GCAA-TAATGTAGCCCTCT-CCCTTTTT-TTT--GT-T---T----TTTT----T--TTTTTT----CGGGAG-GG-------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
Reference ( family-714 ) : AGCT-GCAA-TAATGTAGCCCTCT-CCNTTTTT-TTT--ATTT---T----TTTT----T--TTTTTT----CGGGAGAGG-------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
gi|1 : AGCT-GCAA-TAATGTAGCCCTCT-CCCTTTTT-TTT--ATTT---TTTTTTTTT----T--TTTAT------GGGAGAGG-------CTCCCGT----A-A---CGTCAGAATAA----------GA--AA--AAAT-CGGAGAGGG----C----AACATTATTGCAGCT
gi|10 : AGCT-GCAA-TAATGTAACCCTTT-CCCTTTTT-T------------------------------TTT------GAA----------------------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
gi|11 : AGCT-GCAA-TAATGTAGCCTTCT-CCCTTTTT---------------------------------TT----CGTGA------------------------A---CGTC-GAATAA----------AA--AA--AAAT-CAAGTAGGG----C----TACATTATTGCAGCT
gi|12 : ----------AA--AA--AAAT-C--AGAGGG----C----TACATCATTGCAGCT
gi|13 : ggctgcaataatgtcatttttttaaatAGAATAA----------AA--AATAAAATTCGAAGAGGG----C----TACATTATTGCAGCTa
gi|14 : tagccctcgcacg------A-A---TGTCAGAATAA----------AAAAAA--AAAT-CTGAGAGGG----C----TGCATTATTGCAGCaa
gi|15 : tttttctccaa-GCAG-TAGTGTAGCCCCTT-TTTTTTTT-TTT--TTTT---T----TTTT----TTTTTTTTT----TTGGAGAGG-------
gi|16 : A----------AA--AA--ATAT-CGAAGAGGG----C----TACATTATTACAGCT
gi|17 : --AA--AAAT-CGGAGAGGG----C----GACATTATTGCAGaatcg
gi|2 : AGCT-GCAA-TAATGTAACCCTCTCCCGTTTTTATTTCCGTTTGGGT----TTTT----T--TTTTTT----TGG--------------TCCCGTA---A-A---CGTCAGAAT-A----------AA--AA--AAAT-CAGAGAGGG----C----TACATTATTGCAGCTata
gi|3 : AGCT-GCAA-TAATGTACCCCCCC-CCCTTTTT-TT-----------------TTTAAAT--TTCCTT----C-------T-------CTCCC------A-AAATCGTCAGAACGGGGCCCTCGGTGA--AA--AAAT-TGGGGAGGG----C----TACATTATTGCA
gi|4 : AGCTTGCAAATAATGT-GCCCTCT-CCCTTTTG-TTG--GGGG---T--------------------------GGGGGGGGGGGGGGCTTCCC------GTA---TGTCAGATCAA----------AA--AA--CAAT-CAGAGAGGG----C----TACATTATTGCAGCT
gi|5 : AGCT-GCAA-TAATGCAGCCCTCT-CC-----T-TTT--ATAT---T----TTTA----T--TTTT--------GGGGCCT-------CTCCCGTT---A-A---CATCAGAATAA----------AA--AAG-AAAT-CGGAAAGGG----T----TACATTATTGCAGCT
gi|6 : AGCT-GCAA-TAATGTAGCCCTCT-CC---------------T---T----TTTT----T--TTTTTTTTTAC---------------CTCCCCCAAAAA-A---CG-CGGAG-AA----------AA--AA--AACT-CGGAGAAGAACCCC----TACCTTAATCCAGC
gi|7 : T-GCAA-TGATTTAGCCCTCT-C----TTT-TTT--ATTT---T----TT--------------------GGGAGAGA-------AACGA------A-AA--CGGCAGAATAA----------AA--AA--AAAT-CGTAGAGGG----CTACGTACATTATT-TAGCT
gi|8 : T-GTAA-TAACGTAGACCCCT-CC------------AACT---T----TGTT----T--TTTCTC----CAGAA----------------------A-A---TGTTGACATAA----------AA--AA--TAAT-TGGAGAGGG----C----TACATTATTGTTGCT
gi|9 : -GCAA-TAATTTAGCCCTCT-CCCCTTTT-TTT--G--------------------------GT----AGGGGGGGG-------GT-TA------A-A---CGTCAGAATAA----------AA--AA--AAa
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555555555 111 1111111111
lowQualScore : 3 3 9999 3 99999999999999999999999999999999999999999999999999999 3 000 1111111111 33 55 2 5555 5555
lowQualScore : . . .... . ..................................................... . ... .......... .. .. . .... ....
lowQualScore : 3 3 7777 3 44444444444444444444444444444444444444444444444444444 3 444 7777777777 44 99 7 7777 7777
consensus : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--GTT----TTTTTTTTTTTTC---GGGAG-GG--------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
Reference ( family-714 ) : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--GTT----TTTTTTTTTTTTC---GGGAG-GG--------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
gi|1 : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--ATT----TTTTTTTTTTTTTTATGGGAGAGG--------CTCCCGT----A-A---CGTCAGAATAA----------GA--AA--AAAT-CGGAGAGGG----C----AACATTATTGCAGCT
gi|10 : AGCT-GCAA-TAATGTAACCCTTTCC--C-TTTTT----------------------TTTT---GAA------------------------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
gi|11 : AGCT-GCAA-TAATGTAGCCTTCTCC--C-TTTTT-TT----------------------C---GTGA-------------------------A---CGTC-GAATAA----------AA--AA--AAAT-CAAGTAGGG----C----TACATTATTGCAGCT
gi|12 : ----------AA--AA--AAAT-C--AGAGGG----C----TACATCATTGCAGCT
gi|13 : ggctgcaataatgtcatttttttaaatAGCT-GCAA-TAATGTAGCCCTCTTC-----GAAT-TTT--ATT----TTTTATTCTCGT----GCGAG-GG--------CTa
gi|13 : tAGAATAA----------AA--AATAAAATTCGAAGAGGG----C----TACATTATTGCAGCTaa
gi|14 : tagccctcgcacg------A-A---TGTCAGAATAA----------AAAAAA--AAAT-CTGAGAGGG----C----TGCATTATTGCAGCaa
gi|16 : tttttctccaaA----------AA--AA--ATAT-CGAAGAGGG----C----TACATTATTACAGCT
gi|17 : --AA--AAAT-CGGAGAGGG----C----GACATTATTGCAGaatcg
gi|2 : AGCT-GCAA-TAATGTAACCCTCTCC--CGTTTTTATTTCCGTTTGGGTTTTTTTTTTTTT---GG---------------TCCCGTA---A-A---CGTCAGAAT-A----------AA--AA--AAAT-CAGAGAGGG----C----TACATTATTGCAGCTata
gi|3 : AGCT-GCAA-TAATGTACCCCCCCCC--C-TTTTT-TTT---TTAAA-TTTCCTTCT-----------------------CTCCC------A-AAATCGTCAGAACGGGGCCCTCGGTGA--AA--AAAT-TGGGGAGGG----C----TACATTATTGCA
gi|4 : AGCTTGCAAATAATGT-GCCCTCTCC--C-TTTTG-TTG--GGG----GT--------------GGGGG-GGGGGGGGGCTTCCC------GTA---TGTCAGATCAA----------AA--AA--CAAT-CAGAGAGGG----C----TACATTATTGCAGCT
gi|5 : AGCT-GCAA-TAATGCAGCCCTCTCC--------T-TTT--ATA----TTTTTATTTTT-----GGGGC-CT--------CTCCCGTT---A-A---CATCAGAATAA----------AA--AAG-AAAT-CGGAAAGGG----T----TACATTATTGCAGCT
gi|6 : AGCT-GCAA-TAATGTAGCCCTCTCC--T-TTTTT-T-------------TTTTTTTTTAC-------------------CTCCCCCAAAAA-A---CG-CGGAG-AA----------AA--AA--AACT-CGGAGAAGAACCCC----TACCTTAATCCAGC
gi|7 : T-GCAA-TGATTTAGCCCTCTC-------TTT-TTT--ATT----TTTT------------GGGAG-AG--------AAACG------A-AAA-CGGCAGAATAA----------AA--AA--AAAT-CGTAGAGGG----CTACGTACATTATT-TAGCT
gi|8 : T-GTAA-TAACGTAGACCCCTCCAAC-TTT--------GTT----TTTTCTC-----C---AGAA-----------------------A-A---TGTTGACATAA----------AA--AA--TAAT-TGGAGAGGG----C----TACATTATTGTTGCT
gi|9 : -GCAA-TAATTTAGCCCTCTCC--C-CTTTT-TTT--G----------------GTA---GGGGG-GG--------GGTTA------A-A---CGTCAGAATAA----------AA--AA--AAa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GCAGTAGTGTAGCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGAGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555555555 111 1111111111
lowQualScore : 3 3 9999 3 99999999999999999999999999999999999999999999999999999 3 000 1111111111 33 55 2 5555 5555
lowQualScore : . . .... . ..................................................... . ... .......... .. .. . .... ....
lowQualScore : 3 3 7777 3 44444444444444444444444444444444444444444444444444444 3 444 7777777777 44 99 7 7777 7777
consensus : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--GTT----TTTTTTTTTTTTC---GGGAG-GG--------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
Reference ( family-714 ) : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--GTT----TTTTTTTTTTTTC---GGGAG-GG--------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
gi|1 : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--ATT----TTTTTTTTTTTTTTATGGGAGAGG--------CTCCCGT----A-A---CGTCAGAATAA----------GA--AA--AAAT-CGGAGAGGG----C----AACATTATTGCAGCT
gi|10 : AGCT-GCAA-TAATGTAACCCTTTCC--C-TTTTT----------------------TTTT---GAA------------------------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
gi|11 : AGCT-GCAA-TAATGTAGCCTTCTCC--C-TTTTT-TT----------------------C---GTGA-------------------------A---CGTC-GAATAA----------AA--AA--AAAT-CAAGTAGGG----C----TACATTATTGCAGCT
gi|12 : ----------AA--AA--AAAT-C--AGAGGG----C----TACATCATTGCAGCT
gi|13 : ggctgcaataatgtcatttttttaaatAGCT-GCAA-TAATGTAGCCCTCTTC-----GAAT-TTT--ATT----TTTTATTCTCGT----GCGAG-GG--------CTa
gi|13 : tAGAATAA----------AA--AATAAAATTCGAAGAGGG----C----TACATTATTGCAGCTaa
gi|14 : tagccctcgcacg------A-A---TGTCAGAATAA----------AAAAAA--AAAT-CTGAGAGGG----C----TGCATTATTGCAGCaa
gi|16 : tttttctccaaA----------AA--AA--ATAT-CGAAGAGGG----C----TACATTATTACAGCT
gi|17 : --AA--AAAT-CGGAGAGGG----C----GACATTATTGCAGaatcg
gi|2 : AGCT-GCAA-TAATGTAACCCTCTCC--CGTTTTTATTTCCGTTTGGGTTTTTTTTTTTTT---GG---------------TCCCGTA---A-A---CGTCAGAAT-A----------AA--AA--AAAT-CAGAGAGGG----C----TACATTATTGCAGCTata
gi|3 : AGCT-GCAA-TAATGTACCCCCCCCC--C-TTTTT-TTT---TTAAA-TTTCCTTCT-----------------------CTCCC------A-AAATCGTCAGAACGGGGCCCTCGGTGA--AA--AAAT-TGGGGAGGG----C----TACATTATTGCA
gi|4 : AGCTTGCAAATAATGT-GCCCTCTCC--C-TTTTG-TTG--GGG----GT--------------GGGGG-GGGGGGGGGCTTCCC------GTA---TGTCAGATCAA----------AA--AA--CAAT-CAGAGAGGG----C----TACATTATTGCAGCT
gi|5 : AGCT-GCAA-TAATGCAGCCCTCTCC--------T-TTT--ATA----TTTTTATTTTT-----GGGGC-CT--------CTCCCGTT---A-A---CATCAGAATAA----------AA--AAG-AAAT-CGGAAAGGG----T----TACATTATTGCAGCT
gi|6 : AGCT-GCAA-TAATGTAGCCCTCTCC--T-TTTTT-T-------------TTTTTTTTTAC-------------------CTCCCCCAAAAA-A---CG-CGGAG-AA----------AA--AA--AACT-CGGAGAAGAACCCC----TACCTTAATCCAGC
gi|7 : T-GCAA-TGATTTAGCCCTCTC-------TTT-TTT--ATT----TTTT------------GGGAG-AG--------AAACG------A-AAA-CGGCAGAATAA----------AA--AA--AAAT-CGTAGAGGG----CTACGTACATTATT-TAGCT
gi|8 : T-GTAA-TAACGTAGACCCCTCCAAC-TTT--------GTT----TTTTCTC-----C---AGAA-----------------------A-A---TGTTGACATAA----------AA--AA--TAAT-TGGAGAGGG----C----TACATTATTGTTGCT
gi|9 : -GCAA-TAATTTAGCCCTCTCC--C-CTTTT-TTT--G----------------GTA---GGGGG-GG--------GGTTA------A-A---CGTCAGAATAA----------AA--AA--AAa
blockSeqs : T A AAC A TCCGTTTGGGTTTTTTTTTTTTTGGTCCCGTA T AAT GGCCCTCGGT AA TA T ACCC TACG
blockSeqs : . . CG . TATATTTTTATTTTTGGGGCCTCTCCCGTT . AA . . G . . .
blockSeqs : . . C . GGGGGTGGGGGGGGGGGGGGCTTCCC . . . . . . . .
blockSeqs : . . C . TTTTTTTTTACCTCCCCCAAAA . . . . . . . .
blockSeqs : . . C . TTTAAATTTCCTTCTCTCCC . . . . . . . .
blockSeqs : . . C . TATTTTTTGGGAGAGAAACG . . . . . . . .
blockSeqs : . . T . TGGTAGGGGGGGGGTTA . . . . . . . .
blockSeqs : . . C . GTTTTTTCTCCAGAA . . . . . . . .
blockSeqs : . . . . TTTTGAA . . . . . . . .
blockSeqs : . . . . CGTGA . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--GTT----TTTTTTTTTTTTC---GGGAG-GG--------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
finalCons : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--GTT----TTTTTTTTTTTTC---GGGAG-GG--------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GCAGTAGTGTAGCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGAGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555555555 111 1111111111
lowQualScore : 3 3 9999 3 99999999999999999999999999999999999999999999999999999 3 000 1111111111 33 55 2 5555 5555
lowQualScore : . . .... . ..................................................... . ... .......... .. .. . .... ....
lowQualScore : 3 3 7777 3 44444444444444444444444444444444444444444444444444444 3 444 7777777777 44 99 7 7777 7777
consensus : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--GTT----TTTTTTTTTTTTC---GGGAG-GG--------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
Reference ( family-714 ) : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--GTT----TTTTTTTTTTTTC---GGGAG-GG--------CTCCC------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
gi|1 : AGCT-GCAA-TAATGTAGCCCTCTCC--C-TTTTT-TTT--ATT----TTTTTTTTTTTTTTATGGGAGAGG--------CTCCCGT----A-A---CGTCAGAATAA----------GA--AA--AAAT-CGGAGAGGG----C----AACATTATTGCAGCT
gi|10 : AGCT-GCAA-TAATGTAACCCTTTCC--C-TTTTT----------------------TTTT---GAA------------------------A-A---CGTCAGAATAA----------AA--AA--AAAT-CGGAGAGGG----C----TACATTATTGCAGCT
gi|11 : AGCT-GCAA-TAATGTAGCCTTCTCC--C-TTTTT-TT----------------------C---GTGA-------------------------A---CGTC-GAATAA----------AA--AA--AAAT-CAAGTAGGG----C----TACATTATTGCAGCT
gi|12 : ----------AA--AA--AAAT-C--AGAGGG----C----TACATCATTGCAGCT
gi|13 : ggctgcaataatgtcatttttttaaatAGCT-GCAA-TAATGTAGCCCTCTTC-----GAAT-TTT--ATT----TTTTATTCTCGT----GCGAG-GG--------CTa
gi|13 : tAGAATAA----------AA--AATAAAATTCGAAGAGGG----C----TACATTATTGCAGCTaa
gi|14 : tagccctcgcacg------A-A---TGTCAGAATAA----------AAAAAA--AAAT-CTGAGAGGG----C----TGCATTATTGCAGCaa
gi|16 : tttttctccaaA----------AA--AA--ATAT-CGAAGAGGG----C----TACATTATTACAGCT
gi|17 : --AA--AAAT-CGGAGAGGG----C----GACATTATTGCAGaatcg
gi|2 : AGCT-GCAA-TAATGTAACCCTCTCC--CGTTTTTATTTCCGTTTGGGTTTTTTTTTTTTT---GG---------------TCCCGTA---A-A---CGTCAGAAT-A----------AA--AA--AAAT-CAGAGAGGG----C----TACATTATTGCAGCTata
gi|3 : AGCT-GCAA-TAATGTACCCCCCCCC--C-TTTTT-TTT---TTAAA-TTTCCTTCT-----------------------CTCCC------A-AAATCGTCAGAACGGGGCCCTCGGTGA--AA--AAAT-TGGGGAGGG----C----TACATTATTGCA
gi|4 : AGCTTGCAAATAATGT-GCCCTCTCC--C-TTTTG-TTG--GGG----GT--------------GGGGG-GGGGGGGGGCTTCCC------GTA---TGTCAGATCAA----------AA--AA--CAAT-CAGAGAGGG----C----TACATTATTGCAGCT
gi|5 : AGCT-GCAA-TAATGCAGCCCTCTCC--------T-TTT--ATA----TTTTTATTTTT-----GGGGC-CT--------CTCCCGTT---A-A---CATCAGAATAA----------AA--AAG-AAAT-CGGAAAGGG----T----TACATTATTGCAGCT
gi|6 : AGCT-GCAA-TAATGTAGCCCTCTCC--T-TTTTT-T-------------TTTTTTTTTAC-------------------CTCCCCCAAAAA-A---CG-CGGAG-AA----------AA--AA--AACT-CGGAGAAGAACCCC----TACCTTAATCCAGC
gi|7 : T-GCAA-TGATTTAGCCCTCTC-------TTT-TTT--ATT----TTTT------------GGGAG-AG--------AAACG------A-AAA-CGGCAGAATAA----------AA--AA--AAAT-CGTAGAGGG----CTACGTACATTATT-TAGCT
gi|8 : T-GTAA-TAACGTAGACCCCTCCAAC-TTT--------GTT----TTTTCTC-----C---AGAA-----------------------A-A---TGTTGACATAA----------AA--AA--TAAT-TGGAGAGGG----C----TACATTATTGTTGCT
gi|9 : -GCAA-TAATTTAGCCCTCTCC--C-CTTTT-TTT--G----------------GTA---GGGGG-GG--------GGTTA------A-A---CGTCAGAATAA----------AA--AA--AAa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GCAGTAGTGTAGCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGAGG