lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 1 2222222 666666666666666666666 555555555555555555555 1 11111111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 11 2222222222 222222222222222222 33333333 1 1 11111111111111111111111111111111111111111111111111111111111 1 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 2 99 77 99 2 9 4 1111111 4 444444444444444444444 3 5 5 000000000000000000000 3 66 5 66666666 5 2 2 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000 44 0000000000 888 1 5 5 0 555555555555555555 99999999 0 5 00000000000000000000000000000000000000000000000000000000000 7 2 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6
lowQualScore : . .. .. .. . . . ....... . ..................... . . . ..................... . .. . ........ . . . . .................................................................................................................. ... .. .......... ... . . . . .................. ........ . . ........................................................... . . . ................................................................................................................................................................................................................................................... .
lowQualScore : 2 22 77 66 0 2 4 8888888 4 555555555555555555555 0 7 7 222222222222222222222 5 99 2 77777777 2 5 2 4 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 11 8888888888 888 4 0 0 4 888888888888888888 44444444 0 0 00000000000000000000000000000000000000000000000000000000000 0 5 8 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0
consensus : NGGGGTTCAGG--CCCTA-GGGCG-GGGCCAATATGACCGTATAGT-GAA----TN-TGTAT-T---AA-----------A---TCTTAGA-AA-ATCT-TCT-T-CT---ACTTCCACATATATTT--GAGAAA-A------ACTAAATGCATGATTATGA-TGC-GCATNAGGCCCCTTGTCAAG--TTGTGTAAGATTCATG-C--CTGGGTC-AAGG-TCAGG--CC--T-A-AGG-GT-GGG----------C-------CA---------TAC---AGTGAANATGT------AT-TAAA---TCT-TAGA-AAATCTTCT--C--TACTTCCATATGTATTTGAGAAAAA---CCA--AAATGC-TTGATTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTTATTGCTTTCACTAGGGNTCATGTTCTGAAAGATGATTTGGAGGGNATGGATACTTGGGGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCAT
Reference ( gi|1 ) : GGGGGTTTAGG--CCCTA-GGGCA-GGGCCAATATTACCATATAGT-AAA----TC-TGTAT-T---TT-----------A---CTTTAGA-AA-ATCT-TCTTTTCT---ACTTCTATATATATTT--GACAAA-A------ACTAAGTGCATGATTATGA-TGT-CCATGAAGCCCTTTATCAAGATTT---TAAAATTCA------CTGGGCCTGGGG-TCAGG--CC--T-A-AGG-AT-GGG----------C-------CA---------TAC---AGTGAGGATGT------AT-CAAA---TCT-TAGA-AAATCTTCT--C--TATTTCCGTATGTATTTGAGAAAAA---CAA--AAATGC-TTGATTTTGATGTCCATGAAGCCCTCTACTAAAAT---TTTGAAATTCATGGCTCCTATTGATGTGGGATGTTGAAATCATTTTTTTGCTTCAAACATCCATTTTGTCGTTT------GGAATCATATTC------AT-AT------AACATG------TGA--------------ACAA--AAGGCTTGAATGCAAATATGAGACTTCCTA-TATG--GGCTTTGATACTCAGGTGACCA--TTGGG-GCCT----GTTGGTCTCAAA----ACTAGCT--------TTAGCTATTTCTGCTGTTGATCCTATGACATTTGCTAAAAAAATGTTTCTTC-ACATA-TCTAACCAT
gi|4 : GGAGTTTAGG--TCCTATGGTCG-GGACCAGTATTGCTCTCTGGC-AAA-----A-TGTAT-T---AA-----------A---TCTTAGA-AATATTTCTTTTTTCTGGNNNNNNNNNNNNNNNNN--NNNNNN-N------NNNNNNNNNNNNNNNNNNN-NNN-NNNNNNNNNNNNNNNNCAAGGGTT---TA---------------GGTCCTAAAG-TAGGG--CC--T-ATATT-AT-GGT----------T-------CA----------AC---AATGAATA-GT------AT-TGAA---TGT-TAGA-AAAATCTCT--C--GA---CC-TA---AGTTGTGAAATT---CAG--AAATGC-
gi|5 : ctgggataGGGTTCACGTCCCCAA-GGGTG-GGGCCAATATGACTGTATATT-GAA----CA-TGTACATGCATT-----------AAATCTATAAAGAA-ATC------ACCT---ATATGTACATGTATTTAAGA-AAA-A------ACAAAACGCTTGATTat
gi|6 : ataattatgagtgcactatgattttgtttcgtttgtgtaaaattcatgatccctgggtaaaTTCAGG--CCCTA-GTGTG-GGGATAATATGACTGTGTAGT-GAA----TA-TGT-T-T---AA-----------A---TCTTACA-AA-ATCT-TCT-----------------TATGTTT--GAAAAA-AAACCCCACTAAATGCtt
gi|12 : TCAGG--CCCTT-TGGCA-GTGCCAATATGACCATATAGT-GAA----CA-TGTAT-T---ttagttt
gi|3 : AGG--CCTTA-AGGCGTGGGACATTATGGC-ATACAGTGAAA----TT-TATAT-A---A------------A---TCTTAGA-AA--TCT-TCTTT-CT---ACTTCCATATGTATTT--GAGAAat
gi|14 : cttgagtccaggggttcaggctcgatctaaggctgggccaatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaAGG--CCCTA-TTGTG-GGGTCAATATGACCATATAGT-ATT----CC-TGTAT-T---T
gi|7 : GGTG-GGGCCAATATGAC-ATAGAGT-GAACATATT-TATAT-T---TTTGTATTAAAAAA---TCTTAGA-AA-ATCC-ACTCTTCT------TCTATGTATATTT--GAGAAA-A------ACTAAAT
gi|8 : GGCCAATATGACCATATAGC-AAA----TT-TATAT-T---AA-----------AT--CTTTA-A-AA-ATCT--------C---ACT--CACAGACATGT--GAGGAA-G------ACTAAGTGCATGCTTATG
gi|10 : acACGATACAGT-GA-----TCATGTAT-T---AA-----------A---ATATAGA-AA-ATCT-TCT---CT---ACTTTCATAAATTTTT--GAGAAA-A------
gi|2 : gCT---ACTCCT-CATAT-CTT--GATGAACA------AC-AAAT-CATCAATATAA-T-T-GCATTAGGCCCCT-GTCAA---TTATGTAAGATTCATATC--CTGAGTC--AGG-TCAG---CCATT-A-GGG-GT-TGA----------C-------CAATAA-----TACTTTAAAGAGGGTGT-------T-AGAA---TCC-TTGA-CAATCTTCT--G--TACTTCCAC-TATATTTAGGGGAAA----------ATGCCTTGACTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATG---------------ATTTTAATGCTT-AAACGTCCATTTTAT-GTTTTCACTAGGGAT-ATGTTC------AT-ATTTGGAGAGGATGGATACTTGAGGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCAT
gi|5 : ATAATTATGAGTGCACTATGA----TTTTGTTTCG-TTTGTGTAAAATTCATGATCCCTGGGTAAAGGGTTCACGTCCC--C-A-AGG-GTGGGG----------C-------CAATATGACTGTAT---ATTGAACATGTACATGCAT-TAAA---TCTATAAAGAAATCACCT--A--TATGTAC--ATGTATTTAAGAAAAA---ACA--AAACGC-TTGATTTT
gi|6 : -TCAGG--CC--C-T-AGT-GT-GGGGATAATATGAC-------TG---------TGT---AGTGAATATGT-------T-TAAA---TCT-TACA-AAATCTTCT-------------TATG--TTTGAAAAAAAACCCCACTAAATGC-TTAGTTT
gi|3 : tAGG--CC--TTA-AGGCGT-GGGA---------CATTATGGCA---------TAC---AGTGAA-ATTT------ATATAAA---TCT-TAGA-AA-TCTTCTTTC--TACTTCCATATGTATTTGAGAA
gi|13 : cttgagtccaggggttcaggctcgatctaaggctgggccaatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatca----------C-------CA---------TAC---AGTGAGGATGT------AT-TAAA---T-T-TAGG-AAA-CTTCT--CTTTATTTCC
gi|10 : aA---------TAC---AGTGATCATGT------AT-TAAA---ATA-TAGA-AAATCTTCT--C--TACTTTCATAAATTTTTGAGAAAA
gi|7 : gacgTGT------AT-TAAAAAATCT-TAGA-AAATCCACT--C--TTCTTCTATGTATATTTGAGAAAAA---CTA--AA
gi|9 : ggtggggccaatatgacatagagtgaacatatttatattttGATGAGGAATGTTGAAATGATTTTTATGCTTCAAACTTCCATTT--TTACTT-------GATTCATATTTTGAAAGATGAT------GACATG------TGG--------------ACAA--t
gi|15 : GATGAAGAATGTAGA-----TTTTTATGCTTCAAACATCCATTTT
gi|11 : taTGGGGAATGTCAAAATGATTTATATGATTCAAACTTCCATTTTct
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ACATGAGGAATGTTGAAATGATTATGTTCCAACTTCCATTTTT
Alignments
lowQualScore : 1111 11 3333333333333333 111 111111111111111 111111 1111111 11 333333 2222 11 111 11 1 444444444 111111 22 1 2 2 222 22 11 1 555555 222222 1 11 1 11 22 11 11 2222 2222 33333333 8888888888 22 22 1 1
lowQualScore : 2222 5 5 5 11 2 7777777777777777 111 6 3 999999999999999 1 5 999999 0 2 0 5555555 1 9 0 5 5 33 5 3 777777 5555 33 666 33 0 88 000000000 1 11 3 6 999999 6 999 6 3 99 3 3 11 3 2 0 2 0 2 111 4 66 77 1 11 3 2 1 4 2 0 888888 11 6 0 999999 5 6 1 6 88 2 5 88 2 3 77 77 88 4444 3 2 4444 55555555 4 7777777777 2 2 77 4 77 5 3 5
lowQualScore : .... . . . .. . ................ ... . . ............... . . ...... . . . ....... . . . . . .. . . ...... .... .. ... .. . .. ......... . .. . . ...... . ... . . .. . . .. . . . . . . ... . .. .. . .. . . . . . . ...... .. . . ...... . . . . .. . . .. . . .. .. .. .... . . .... ........ . .......... . . .. . .. . . .
lowQualScore : 1111 3 0 0 66 2 5555555555555555 777 7 5 333333333333333 6 7 222222 8 2 4 2222222 0 2 8 8 2 00 2 2 222222 5555 88 222 88 0 22 888888888 0 33 2 7 222222 7 777 7 5 22 2 2 77 3 5 0 5 0 5 000 0 00 55 0 55 2 5 0 0 3 7 000000 77 7 7 555555 0 0 0 0 55 5 0 00 5 0 55 55 00 0000 0 5 5555 55555555 0 5555555555 5 5 55 0 55 5 0 5
consensus : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATTAAA---TCTTAGAAA-ATCTTC-TT--CTACTTCCATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTT-NTGTAAGATTCATG---CCTGGGTCC-AAGG--TCAGG--CC--TA-AGGGTGGG-CCA---------TACAGTGAANATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TACTTCCACATGTATTTGAGAAAAA--AAAACGC-TTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTTGTCGTTT------GGAATCATATTCTGAAAGATGATTTGGAGAGGATGGATACTTGAGGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
Reference ( family-709 ) : NGGGGTTCAGGCCC----TAGGG-CG-GGGCCAATATGACCGTATAGTGAA------------T--NTGTATTAAA---TCTTAGAAA-ATCTTC-TT--CTACTTCCACATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATNAGGCCCCTTGTCAAGTT-GTGTAAGATTCATG---CCTGGGTC--AAGG--TCAGG--CC--TA-AGGGTGGG-CCA---------TACAGTGAANATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TACTTCCATATGTATTTGAGAAAAACCAAAATGC-TTGATTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTTATTGCTTTCACTAGGGNTCATGTTCTGAAAGATGATTTGGAGGGNATGGATACTTGGGGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCAT
gi|1 : GGGGTTTAGGCCC----TAGGG-CA-GGGCCAATATTACCATATAGTAAA------------T--CTGTATTTTA---CTTTAGAAA-ATCTTC-TTTTCTACTTCTATATATATTTGA-CAAAAA------CTAAGTGCATGATTATGA-TGTCC-ATGAAGCCCTTTATCAAGAT-TT-TAAAATTCA------CTGGGCCT-GGGG--TCAGG--CC--TA-AGGATGGG-CCA---------TACAGTGAGGATG-TA------TCA-AATCT-TAGA-AAATCTTCTC--TATTTCCGTATGTATTTGAGAAAAACAAAAATGC-TTGATTTTGATGTCCATGAAGCCCTCTACTAAAAT---TTTGAAATTCATGGCTCCTATTGATGTGGGATGTTGAAATCATTTTTTTGCTTCAAACATCCATTTTGTCGTTT------GGAATCATATTC
gi|1 : gACAA--AAGGCTTGAATGCAAATATGAGACTTCCTA-TATG--GGCTTTGATACTCAGGTGACCA--TTGGG-GCCT----GTTGGTCTCAAA----ACTAGCT--------TTAGCTATTTCTGCTGTTGATCCTATGACATTTGCTAAAAAAATGTTTCTTC-ACATA-TCTAACCATatataacatgtgaacaaaaggcttgaatgcaaatatgagacttcctatatgggctttgatactcaggtgaccattggggcctgttggtctcaaaactagctttagctatttctgctgttgatcctatgacatttgctaaaaaaatgtttcttcacatatctaaccat
gi|10 : gggggtttaggccctagggcagggccaatattaccatatagtaaatctgtattttactttagaaaatcttcttttctacttctatatatatttgacaaaaactaagtgcatgattatgatgtccatgaagccctttatcaagattttaaaattcactgggcctggggtcaggcctaaggatgggccatacagtgaggatgtatcaaatcttagaaaatcttctctatttccgtatgtatttgagaaaaacaaaaatgcttgattttgatgtccatgaagccctctactaaaattttgaaattcatggctcctattgatgtgggatgttgaaatcatttttttgcttcaaacatccattttgtcgtttggaatcatattcatataacatgtgaA---------TACAGTGATCATG-TA------TTA-AAATA-TAGA-AAATCTTCTC--TACTTTCATAAATTTTTGAGAAAA
gi|11 : gacgTGGGGAATGTCAAAATGATTTATATGATTCAAACTTCCATTTT
gi|12 : TCAGGCCC----TTTGG-CA-GTGCCAATATGACCATATAGTGAA------------C--ATGTATTAtccttat
gi|13 : -CCA---------TACAGTGAGGATG-TA------TTA-AAT-T-TAGG-AAA-CTTCTCTTTATTTCCt
gi|14 : aAGGCCC----TATTG-TG-GGGTCAATATGACCATATAGT--A------------TTCCTGTATT
gi|15 : GATGAAGAATGT----A-GATTTTTATGCTTCAAACATCCATTTTt
gi|16 : taATGAGGAATGTTGAAATGA---TTATG-TTCCAACTTCCATTTTct
gi|2 : ac--CTACT-CCTCATAT-CTTGATGAACAA------C-AAAT-CATCAATATAA-T-TGC-ATTAGGCCCCT-GTCAA-TT-ATGTAAGATTCATAT--CCTGAGTC--A-GG--TCAG---CCATTA-GGGGTTGA-CCAATAA-----TACTTTAAAGAGGGTG------TTAGAATCC-TTGA-CAATCTTCTG--TACTTCCAC-TATATTTAGGGGAAA-----ATGCCTTGACTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATGA---------------TTTTAATGCTT-AAACGTCCATTTTAT-GTTTTCACTAGGGAT-ATGTTC------AT-ATTTGGAGAGGATGGATACTTGAGGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCATt
gi|3 : GGGGTTCAGGCTCGATCTAAGG-CT-GGGCCAATATGA
gi|3 : cttgagtccaAGGCCT----TAAGG-CGTGGGACATTATGGC-ATACAGTGAAA-----------T--TTATAT-AAA---TCTTAG-AA-ATCTTCTTT--CTACTTCCATATGTATTTGA-GAAaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|4 : cttgagtccaggggttcaggctcgatctaaggctgggccaatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaGGAGTTTAGGTCC----TATGGTCG-GGACCAGTATTGCTCTCTGGCAAA---------------ATGTATTAAA---TCTTAGAAATAT-TTC-TT--TT--TTCTGGNNNNNNNNNN-NNNNNN------NNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNNNNNNN-NNNCAAGG-----G---TTTAGGTCCTAAAG--TAGGG--CC--TATATTATGGT-TCA----------ACAATGAATA-G-TA------TTG-AATGT-TAGA-AAAATCTCTC--GACCT
gi|5 : ctgggataATAATTATGAGTGCACTATGA----TTTTGTTTCGTTTGTGTAAAATTCATGATCCCTGGGTA--AAGGGTTCACGTCCC--CA-AGGGTGGGGCCAATATGACTGTATATTGAACATG-TACATGCATTA-AATCTATAAAGAAATCACCTA--TATGT--ACATGTATTTAAGAAAAAACAAAACGC-TTGATTTTaagttgtgaaattcagaaatgcat
gi|6 : TTCAGGCCC----TAGTG-TG-GGGATAATATGACTGTGTAGTGAA------------T--ATGT-TTAAA---TCTTACAAA-ATCTTC-TT--------------ATGTTTGA-AAAAAAACCCCACTAAATGC
gi|7 : GG-TG-GGGCCAATATGAC-ATAGAGTGAACATATTTATATTT--TTGTATTAAAAAATCTTAGAAA-ATCCAC-T---CTTCTTCTATGTATATTTGA-GAAAAA------CTAAATttagttt
gi|8 : GGCCAATATGACCATATAGCAAA------------T--TTATATTAAA---TCTTTAAAA-ATCT--------CACT--CACAGACATGTGA-GGAAGA------CTAAGTGCATGCTTATG
gi|9 : acGATGAGGAATGTTGAAATGATTTTTATGCTTCAAACTTCCATTT--TTACTT-------GATTCATATTTTGAAAGATGAT
Alignments
lowQualScore : 1111 3333333333333333 111111 111111 1111111 11 33333 11 11 22222222222 4444444444 222222 11 1 33 1 1 222 11 2222 222 88888888888888888888888888888 2222 11 1 111 1 11 1 11 11 11 11 2222 2222 33333333 4444444444 11 11 1 1
lowQualScore : 2222 1 5 5 1 0 4444444444444444 777 5 1 666666 3 555 11 0 5 999999 0 2 0 5555555 9 5 5 11 5 3 11111 66 11 8 22222222222 8 1 6 1111111111 3 1 5 8 333333 8 5 8 8 6 11 2 7 2 66 6 1 5 1 5 1 111 1 22 88 5 0000 3 66 6 2 7 000 1 44444444444444444444444444444 3333 77 5 2 555 333 5 88 1 5 88 1 1 88 77 66 4444 1 1 4444 55555555 1 0000000000 1 1 88 1 88 5 1 5
lowQualScore : .... . . . . . ................ ... . . ...... . ... .. . . ...... . . . ....... . . . .. . . ..... .. .. . ........... . . . .......... . . . . ...... . . . . . .. . . . .. . . . . . . ... . .. .. . .... . .. . . . ... . ............................. .... .. . . ... ... . .. . . .. . . .. .. .. .... . . .... ........ . .......... . . .. . .. . . .
lowQualScore : 1111 0 0 0 9 9 1111111111111111 888 7 7 888888 4 222 88 4 0 222222 8 2 4 2222222 2 8 2 00 2 2 55555 22 00 0 00000000000 0 4 7 6666666666 2 0 6 0 000000 0 0 0 0 0 00 5 3 0 77 7 0 0 0 0 0 000 0 00 55 2 2222 2 33 7 5 5 333 0 00000000000000000000000000000 0000 55 0 5 555 555 5 55 0 0 00 0 0 00 55 00 0000 0 0 5555 55555555 0 5555555555 0 0 00 0 55 5 0 5
consensus : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTC-TT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAAA--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACTTCCATTTT-TTGCTT-------GAATCAT--ATTTTG----AT-ATTTGGAGAGGATNGATACTTNANGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
Reference ( family-709 ) : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTC-TT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTN-TGTAAGATTCATG---CCTGGGTCC-AAGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACAGTGAANATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TACTTCCACATGTATTTGAGAAAAA--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTTGTCGTTT------GGAATCAT--ATTCTGAAAGATGATTTGGAGAGGATGGATACTTGAGGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
gi|1 : GGGGTTTAGGCCC----TAGGG-CA-GGGCCAATATTACCATATAGTAAA------------T--CTGTATT---TTACTTTAGAAA-ATCTTC-TTTTCTACTTC-TATATATATTTGA-CAAAAA------CTAAGTGCATGATTATGA-TGTCC-ATGAAGCCCTTTATCAAGATT-T-TAAAATTCA------CTGGGCCT-GGGG--T-CAGG--C-----C--TA-AGGATGGG-CCA---------TACAGTGAGGATG-TA------TCA-AATCT-TAGA-AAATCTTCTC--TATTTCCGTATGTATTTGAGAAAAACAAAAATGCTTGATTTTGATGTCCATGAAGCCCTCTACTAAAATTT---TGAAATTCATGGCTCCTATTGAT-------GT-GGGATG----------TTGAAAT---CATTTTTTTGCTT------CAAA-CATCCATTTTG-----TCGTTTGGA----ATC-ATA-TTCATA-TAACATGTGA-ACAA--AAGGCTTGAATGCAAATATGAGACTTCCTAT-ATGG--GCTTTGATACTCAGGTGACCA--TTGGG-GCCT----GTTGGTCTCAAA----ACTAGCTT--------TAGCTATTTCTGCTGTTGATCCTATGACATTTGCTAAAAAAATGTTTCTTC-ACATA-TCTAACCAT
gi|10 : gGACGATACAGTGAT------------C--ATGTATT---AAAATATAGAAA-ATCTTC--T--CTACTTT-CATAAATTTTTGA-GAAAA
gi|11 : TGGGGAATGTCAAAATGATTTATATGATTCAAACTTCCATTTT
gi|12 : TCAGGCCC----TTTGG-CA-GTGCCAATATGACCATATAGTGAA------------C--ATGTATT---Atccttat
gi|13 : -CCA---------TACAGTGAGGATG-TA------TTA-AAT-T-TAGG-AAA-CTTCTCTTTATTTCCt
gi|14 : aAGGCCC----TATTG-TG-GGGTCAATATGACCATATAGT--A------------TTCCTGTATT---
gi|15 : GATGAAGAATGT----A-GATTTTTATGCTTCAAACATCCATTTTt
gi|16 : taATGAGGAATGTTGAAATGA---TTATG-TTCCAACTTCCATTTTct
gi|2 : ac--CTACTCCTCATAT---CTTGATGAACAA------C-AAAT-CATCAATATAA-T-TGC-ATTAGGCCCCT-GTCAA-TTA-TGTAAGATTCATAT--CCTGAGTC---AGG--T-CAG---C-----CATTA-GGGGTTGA-CCAATAA-----TACTTTAAAGAGGGTG------TTAGAATCC-TTGA-CAATCTTCTG--TACTTCCAC-TATATTT-AGGGGAA--AATGC-CTTGACTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATGA---------------TTTTAATGCTT-AAACGTCCATTTTAT-GTTTTCACTAGGGAT-AT--GTTC------AT-ATTTGGAGAGGATGGATACTTGAGGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCATt
gi|3 : ---CTTGAGTCC-AGGGGTT-CAGG--CTCGATC--TA-AGGCTGGG-CCA---------
gi|3 : GGGGTTCAGGCTCGATCTAAGG-CT-GGGCCAATATGAatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|3 : cttgagtccaAGGCCT----TAAGG-CGTGGGACATTATGGC-ATACAGTGAAA-----------T--TTATAT----AAATCTTAG-AA-ATCTTCTTT--CTACTTC-CATATGTATTTGA-GAAaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|4 : cttgagtccaggggttcaggctcgatctaaggctgggccaatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaGGAGTTTAGGTCC----TATGGTCG-GGACCAGTATTGCTCTCTGGCAAA---------------ATGTATT---AAATCTTAGAAATAT-TTC-TT--TT--TTC-TGGNNNNNNNNNN-NNNNNN------NNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNNNNNNNN-NNCAAGG-----G---TTTAGGTCCTAAAG--T-AGGG--C-----C--TATATTATGGT-TCA----------ACAATGAATA-G-TA------TTG-AATGT-TAGA-AAAATCTCTC--GACCT
gi|5 : ctgggataATAATTATGAGTGCACTATGA----TTTTGTTTCGTTTGTGTAAAATTCATGATCCCTGGGTAA-AGGG--TTCACGTCC-----C--CA-AGGGTGGGGCCAATATGACTGTATATTGAACATG-TACATGCATTA-AATCTATAAAGAAATCACCTA--TATGT--ACATGTATTTAAGAAAAAACAAAACGCTTGATTTTaagttgtgaaattcagaaatgcat
gi|6 : TTCAGGCCC----TAGTG-TG-GGGATAATATGACTGTGTAGTGAA------------T--ATGT-TT---AAATCTTACAAA-ATCTTC-TT---------------ATGTTTGA-AAAAAAACCCCACTAAATGC
gi|7 : GG-TG-GGGCCAATATGA-CATAGAGTGAACATATTTATATTT--TTGTATTAAAAAATCTTAGAAA-ATCCAC--T--CTTCTTC-TATGTATATTTGA-GAAAAA------CTAAATttagttt
gi|8 : GGCCAATATGACCATATAGCAAA------------T--TTATATT---AAATCTTTAAAA-ATCT--------CACT---CACAGACATGTGA-GGAAGA------CTAAGTGCATGCTTATG
gi|9 : acGATGAGGAATGTTGAAATGATTTTTATGCTTCAAACTTCCATTT--TTACTT-------GATTCAT--ATTTTGAAAGATGAT
Alignments
lowQualScore : 1111 3333333333333333 111111 111111 1111111 1 33333 222 11 22222222222 4444444444 222222 11 1 22222 1 1 222 11 11 2222 4444444 11 9999999999999999999999999 1 11 1 11 11 11 11 2222 2222 33333333 4444444444 11 11 1 1
lowQualScore : 2222 1 5 5 1 0 4444444444444444 777 5 1 666666 3 555 11 0 5 999999 0 2 0 5555555 9 5 5 0 5 3 11111 000 99 22222222222 8 1 8 1111111111 1 5 8 333333 8 5 8 8 6 11 2 7 2 77777 6 1 5 1 5 1 111 1 22 88 1 11 3 2 3 6 0 6666 3333333 44 7777777777777777777777777 1 2 5 88 1 5 88 1 1 88 77 66 4444 1 1 4444 55555555 1 0000000000 1 1 88 1 88 5 1 5
lowQualScore : .... . . . . . ................ ... . . ...... . ... .. . . ...... . . . ....... . . . . . . ..... ... .. ........... . . . .......... . . . ...... . . . . . .. . . . ..... . . . . . . ... . .. .. . .. . . . . . .... ....... .. ......................... . . . .. . . .. . . .. .. .. .... . . .... ........ . .......... . . .. . .. . . .
lowQualScore : 1111 0 0 0 9 9 1111111111111111 888 7 7 888888 4 222 88 4 0 222222 8 2 4 2222222 2 8 2 0 2 2 55555 888 00 00000000000 0 4 0 6666666666 0 6 0 000000 0 0 0 0 0 00 5 3 0 77777 7 0 0 0 0 0 000 0 00 55 0 55 2 5 7 7 7 7777 3333333 00 5555555555555555555555555 0 5 5 55 0 0 00 0 0 00 55 00 0000 0 0 5555 55555555 0 5555555555 0 0 00 0 55 5 0 5
consensus : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTC-TT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--TCAGG--C-----C--TA-AGGGT-GGGCCA---------TACANTGAAGATG-T------ATTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTT-GA-TCA-------TATTTT-ATATTTGGAGAGGATGGATACTTGAGGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
Reference ( family-709 ) : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTC-TT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--TCAGG--C-----C--TA-AGGGT-GGGCCA---------TACANTGAAGATG-T------ATTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACTTCCATTTT-TTGCTT-GAATCA-------TATTTTGATATTTGGAGAGGATNGATACTTNANGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
gi|1 : GGGGTTTAGGCCC----TAGGG-CA-GGGCCAATATTACCATATAGTAAA------------T--CTGTATT---TTACTTTAGAAA-ATCTTC-TTTTCTACTTC-TATATATATTTGA-CAAAAA------CTAAGTGCATGATTATGA-TGTCC-ATGAAGCCCTTTATCAAGATT-T-TAAAATTCA------CTGGGCCT-GGGG--TCAGG--C-----C--TA-AGGAT-GGGCCA---------TACAGTGAGGATG-T------ATCA-AATCT-TAGA-AAATCTTCTC--TATTTCCGTATGTATTTGAGAAAAACA--AAAATGCTTGATTTTGATGTCCATGAAGCCCTCTACTAAAAT---TTTGAAATTCATGGCTCCTATTGATGTGGGATGTTGAAATCATTTTTTTGCTTCAAACATCCATTTTGTCGTTTGGAATCA-------TATTC--ATAT-------------------------AACATGTGA-ACAA--AAGGCTTGAATGCAAATATGAGACTTCCTA-TATG--GGCTTTGATACTCAGGTGACCA--TTGGG-GCCT----GTTGGTCTCAAA----ACTAGCT--------TTAGCTATTTCTGCTGTTGATCCTATGACATTTGCTAAAAAAATGTTTCTTC-ACATA-TCTAACCAT
gi|10 : gGACGATACAGTGAT------------C--ATGTATT---AAAATATAGAAA-ATCTTC--T--CTACTTT-CATAAATTTTTGA-GAAAA
gi|11 : TGGGGAATGTCAAAATGATTTATATGATTCAAACTTCCATTTT-T
gi|12 : TCAGGCCC----TTTGG-CA-GTGCCAATATGACCATATAGTGAA------------C--ATGTATT---Accttat
gi|13 : CCA---------TACAGTGAGGATG-T------ATTA-AAT-T-TAGG-AAA-CTTCTCTTTATTTCCt
gi|14 : aAGGCCC----TATTG-TG-GGGTCAATATGACCATATAGT--A------------TTCCTGTATT---
gi|15 : GATGAAGAATGT----A-GATTTTTATGCTTCAAACATCCATTTT-CTt
gi|16 : taATGAGGAATGTTGAAATGA---TTATG-TTCCAACTTCCATTTT-T
gi|2 : ac--CTACTCCTCATAT---CTTGATGAACAA------C-AAAT-CATCAATATAA-T-TGC-ATTAGGCCCCT-GTCAA-TTA-TGTAAGATTCATAT--CCTGAGTC---AGG--TCAG---C-----CATTA-GGGGT-TGACCAATAA-----TACTTTAAAGAGGGT------GTTAGAATCC-TTGA-CAATCTTCTG--TACTTCCAC-TATATTT-AGGGGA--A--AATGC-CTTGACTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATGA---------------TTTTAATGCTT-AAACGTCCATTTT-ATGTTT----TCACTAGGGATATGTTCATATTTGGAGAGGATGGATACTTGAGGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCAT
gi|3 : ---CTTGAGTCC-AGGGGTTCAGG--CTCGATC--TA-AGGCT-GGGCCA---------
gi|3 : GGGGTTCAGGCTCGATCTAAGG-CT-GGGCCAATATGAatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|3 : cttgagtccaAGGCCT----TAAGG-CGTGGGACATTATGGC-ATACAGTGAAA-----------T--TTATAT----AAATCTTAG-AA-ATCTTCTTT--CTACTTC-CATATGTATTTGA-GAAaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|4 : cttgagtccaggggttcaggctcgatctaaggctgggccaatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaGGAGTTTAGGTCC----TATGGTCG-GGACCAGTATTGCTCTCTGGCAAA---------------ATGTATT---AAATCTTAGAAATAT-TTC-TT--TT--TTC-TGGNNNNNNNNNN-NNNNNN------NNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNNNNNNNN-NNCAAGG-----G---TTTAGGTCCTAAAG--TAGGG--C-----C--TATATTAT-GGTTCA----------ACAATGAATA-G-T------ATTG-AATGT-TAGA-AAAATCTCTC--
gi|5 : ctgggataATAATTATGAGTGCACTATGA----TTTTGTTTCGTTTGTGTAAAATTCATGATCCCTGGGTAA-AGGGT-TCACGTCC-----C--CA-AGGGTGGGGCCAATATGACTGTATATTGAACATG-TACATGCATTA-AATCTATAAAGAAATCACCTA--TATGT--ACATGTATTTAAGAAAA--AACAAAACGCTTGATTTTgacctaagttgtgaaattcagaaatgcat
gi|6 : TTCAGGCCC----TAGTG-TG-GGGATAATATGACTGTGTAGTGAA------------T--ATGT-TT---AAATCTTACAAA-ATCTTC-TT---------------ATGTTTGA-AAAAAAACCCCACTAAATGC
gi|7 : GG-TG-GGGCCAATATGA-CATAGAGTGAACATATTTATATTT--TTGTATTAAAAAATCTTAGAAA-ATCCAC--T--CTTCTTC-TATGTATATTTGA-GAAAAA------CTAAATttagttt
gi|8 : GGCCAATATGACCATATAGCAAA------------T--TTATATT---AAATCTTTAAAA-ATCT--------CACT---CACAGACATGTGA-GGAAGA------CTAAGTGCATGCTTATG
gi|9 : acGATGAGGAATGTTGAAATGATTTTTATGCTTCAAACTTCCA-TTT-TTACTT-GATTCA-------TATTTTGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 1111 3333333333333333 11111 111111 1111111 1 33333 222 11 22222222222 4444444444 222222 11 1 22222 1 1 222 11 11 00000000000000000000000000000000000000000000000000 1 11 1 11 11 11 11 2222 2222 33333333 4444444444 11 11 1 1
lowQualScore : 2222 1 5 5 1 0 4444444444444444 777 5 1 66666 3 555 11 0 5 999999 0 2 0 5555555 9 5 5 0 5 3 11111 000 11 8 22222222222 8 1 6 1111111111 1 5 8 333333 8 5 8 8 6 11 2 7 2 77777 6 1 5 1 5 1 111 1 22 88 1 11 3 2 1 6 55555555555555555555555555555555555555555555555555 1 2 5 88 1 5 88 1 1 88 77 66 4444 1 1 4444 55555555 1 0000000000 1 1 88 1 88 5 1 5
lowQualScore : .... . . . . . ................ ... . . ..... . ... .. . . ...... . . . ....... . . . . . . ..... ... .. . ........... . . . .......... . . . ...... . . . . . .. . . . ..... . . . . . . ... . .. .. . .. . . . . .................................................. . . . .. . . .. . . .. .. .. .... . . .... ........ . .......... . . .. . .. . . .
lowQualScore : 1111 0 0 0 9 9 1111111111111111 888 7 7 11111 4 222 88 4 0 222222 8 2 4 2222222 2 8 2 0 2 2 55555 888 00 0 00000000000 0 4 7 6666666666 0 6 0 000000 0 0 0 0 0 00 5 3 0 77777 7 0 0 0 0 0 000 0 00 55 0 55 2 5 0 7 00000000000000000000000000000000000000000000000000 0 5 5 55 0 0 00 0 0 00 55 00 0000 0 0 5555 55555555 0 5555555555 0 0 00 0 55 5 0 5
consensus : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTCTT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTCGTAT----AGA-GATG---AC-TG-GGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
Reference ( family-709 ) : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTCTT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTTATATTTGGAGAGGATGGATACTTGAGGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
gi|1 : GGGGTTTAGGCCC----TAGGG-CA-GGGCCAATATTACCATATAGTAAA------------T--CTGTATT---TTACTTTAGAAA-ATCTTCTTTTCTACTTC-TATATATATTTGA-CAAAAA------CTAAGTGCATGATTATGA-TGTCC-ATGAAGCCCTTTATCAAGATT-T-TAAAATTCA------CTGGGCCT-GGGG--T-CAGG--C-----C--TA-AGGATGGG-CCA---------TACAGTGAGGATG-TA------TCA-AATCT-TAGA-AAATCTTCTC--TATTTCCGTATGTATTTGAGAAAAACA--AAAATGCTTGATTTTGATGTCCATGAAGCCCTCTACTAAAAT---TTTGAAATTCATGGCTCCTATTGATGTGGGATGTTGAAATCATTTTTTTGCTTCAAACATCCATTTTGTCGTTTGGAA-TCA-------TA--TTCATAT-------------------------AACATGTGA-ACAA--AAGGCTTGAATGCAAATATGAGACTTCCTA-TATG--GGCTTTGATACTCAGGTGACCA--TTGGG-GCCT----GTTGGTCTCAAA----ACTAGCT--------TTAGCTATTTCTGCTGTTGATCCTATGACATTTGCTAAAAAAATGTTTCTTC-ACATA-TCTAACCAT
gi|10 : gGACGATACAGTGAT------------C--ATGTATT---AAAATATAGAAA-ATCTTC-T--CTACTTT-CATAAATTTTTGA-GAAAA
gi|11 : TGGGGAATGTCAAAATGATTTATATGATTCAAACTTCCATTTT-T
gi|12 : TCAGGCCC----TTTGG-CA-GTGCCAATATGACCATATAGTGAA------------C--ATGTATT---Accttat
gi|13 : -CCA---------TACAGTGAGGATG-TA------TTA-AAT-T-TAGG-AAA-CTTCTCTTTATTTCCt
gi|14 : aAGGCCC----TATTG-TG-GGGTCAATATGACCATATAGT--A------------TTCCTGTATT---
gi|15 : GATGAAGAATGT----A-GATTTTTATGCTTCAAACATCCATTTT-CTt
gi|16 : taATGAGGAATGTTGAAATGA---TTATG-TTCCAACTTCCATTTT-T
gi|2 : ac--CTACTCCTCATAT---CTTGATGAACAA------C-AAAT-CATCAATATAA-T-TGC-ATTAGGCCCCT-GTCAA-TTA-TGTAAGATTCATAT--CCTGAGTC---AGG--T-CAG---C-----CATTA-GGGGTTGA-CCAATAA-----TACTTTAAAGAGGGTG------TTAGAATCC-TTGA-CAATCTTCTG--TACTTCCAC-TATATTT-AGGGGA--A--AATGC-CTTGACTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATGA---------------TTTTAATGCTT-AAACGTCCATTTT-ATGTTT-----TCACTAGGGATATGTTCATATTTGGAGAGGATGGATACTTGAGGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCAT
gi|3 : ---CTTGAGTCC-AGGGGTT-CAGG--CTCGATC--TA-AGGCTGGG-CCA---------
gi|3 : GGGGTTCAGGCTCGATCTAAGG-CT-GGGCCAATATGAatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|3 : cttgagtccaAGGCCT----TAAGG-CGTGGGACATTATGGC-ATACAGTGAAA-----------T--TTATAT----AAATCTTAGAAA--TCTTCTTT-CTACTTC-CATATGTATTTGA-GAAaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|4 : cttgagtccaggggttcaggctcgatctaaggctgggccaatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaGGAGTTTAGGTCC----TATGGTCG-GGACCAGTATTGCTCTCTGGCAAA---------------ATGTATT---AAATCTTAGAAATAT-TTCTT--TT--TTC-TGGNNNNNNNNNN-NNNNNN------NNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNNNNNNNN-NNCAAGG-----G---TTTAGGTCCTAAAG--T-AGGG--C-----C--TATATTATGGT-TCA----------ACAATGAATA-G-TA------TTG-AATGT-TAGA-AAAATCTCTC--
gi|5 : ctgggataATAATTATGAGTGCACTATGA----TTTTGTTTCGTTTGTGTAAAATTCATGATCCCTGGGTAA-AGGG--TTCACGTCC-----C--CA-AGGGTGGGGCCAATATGACTGTATATTGAACATG-TACATGCATTA-AATCTATAAAGAAATCACCTA--TATGT--ACATGTATTTAAGAAAA--AACAAAACGCTTGATTTTgacctaagttgtgaaattcagaaatgcat
gi|6 : TTCAGGCCC----TAGTG-TG-GGGATAATATGACTGTGTAGTGAA------------T--ATGT-TT---AAATCTTACAAA-ATCTTCTT---------------ATGTTTGA-AAAAAAACCCCACTAAATGC
gi|7 : GG-TG-GGGCCAATATGA-CATAGAGTGAACATATTTATATTT--TTGTATTAAAAAATCTTAGAAA-ATCCAC-T--CTTCTTC-TATGTATATTTGA-GAAAAA------CTAAATttagttt
gi|8 : GGCCAATATGACCATATAGCAAA------------T--TTATATT---AAATCTTTAAAA-ATCT-------CACT---CACAGACATGTGA-GGAAGA------CTAAGTGCATGCTTATG
gi|9 : acGATGAGGAATGTTGAAATGATTTTTATGCTTCAAACTTCCA-TTT-TTACTTG--ATTCA-------TAT-TTTGAA-----AGATGATG---ACATGTGGACAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1111 3333333333333333 111111 111111 1111111 1 33333 222 11 22222222222 4444444444 222222 11 1 22222 1 1 222 11 11 55555555555555555555555555555555555555555555555555555 1 11 1 11 11 11 11 2222 2222 33333333 4444444444 11 11 1 1
lowQualScore : 2222 1 5 5 1 0 4444444444444444 777 5 1 666666 3 555 11 0 5 999999 0 2 0 5555555 9 5 5 0 5 3 11111 000 11 8 22222222222 8 1 6 1111111111 1 5 8 333333 8 5 8 8 6 11 2 7 2 77777 6 1 5 1 5 1 111 1 22 88 1 11 3 2 1 6 44444444444444444444444444444444444444444444444444444 1 2 5 88 1 5 88 1 1 88 77 66 4444 1 1 4444 55555555 1 0000000000 1 1 88 1 88 5 1 5
lowQualScore : .... . . . . . ................ ... . . ...... . ... .. . . ...... . . . ....... . . . . . . ..... ... .. . ........... . . . .......... . . . ...... . . . . . .. . . . ..... . . . . . . ... . .. .. . .. . . . . ..................................................... . . . .. . . .. . . .. .. .. .... . . .... ........ . .......... . . .. . .. . . .
lowQualScore : 1111 0 0 0 9 9 1111111111111111 888 7 7 888888 4 222 88 4 0 222222 8 2 4 2222222 2 8 2 0 2 2 55555 888 00 0 00000000000 0 4 7 6666666666 0 6 0 000000 0 0 0 0 0 00 5 3 0 77777 7 0 0 0 0 0 000 0 00 55 0 55 2 5 0 7 33333333333333333333333333333333333333333333333333333 0 5 5 55 0 0 00 0 0 00 55 00 0000 0 0 5555 55555555 0 5555555555 0 0 00 0 55 5 0 5
consensus : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTC-TT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTCGTAT----AGA-G-ATG---AC-T--G-GGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
Reference ( family-709 ) : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTC-TT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTCGTAT----AGA-G-ATG---AC-T--G-GGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
gi|1 : GGGGTTTAGGCCC----TAGGG-CA-GGGCCAATATTACCATATAGTAAA------------T--CTGTATT---TTACTTTAGAAA-ATCTTC-TTTTCTACTTC-TATATATATTTGA-CAAAAA------CTAAGTGCATGATTATGA-TGTCC-ATGAAGCCCTTTATCAAGATT-T-TAAAATTCA------CTGGGCCT-GGGG--T-CAGG--C-----C--TA-AGGATGGG-CCA---------TACAGTGAGGATG-TA------TCA-AATCT-TAGA-AAATCTTCTC--TATTTCCGTATGTATTTGAGAAAAACA--AAAATGCTTGATTTTGATGTCCATGAAGCCCTCTACTAAAAT---TTTGAAATTCATGGCTCCTATTGATGTGGGATGTTGAAATCATTTTTTTGCTTCAAACATCCATTTTGTCGTTTGGAA-TCA-------TA--TTCATAT----------------------------AACATGTGA-ACAA--AAGGCTTGAATGCAAATATGAGACTTCCTA-TATG--GGCTTTGATACTCAGGTGACCA--TTGGG-GCCT----GTTGGTCTCAAA----ACTAGCT--------TTAGCTATTTCTGCTGTTGATCCTATGACATTTGCTAAAAAAATGTTTCTTC-ACATA-TCTAACCAT
gi|10 : gGACGATACAGTGAT------------C--ATGTATT---AAAATATAGAAA-ATCTTC--T--CTACTTT-CATAAATTTTTGA-GAAAA
gi|11 : TGGGGAATGTCAAAATGATTTATATGATTCAAACTTCCATTTT-T
gi|12 : TCAGGCCC----TTTGG-CA-GTGCCAATATGACCATATAGTGAA------------C--ATGTATT---Accttat
gi|13 : -CCA---------TACAGTGAGGATG-TA------TTA-AAT-T-TAGG-AAA-CTTCTCTTTATTTCCt
gi|14 : aAGGCCC----TATTG-TG-GGGTCAATATGACCATATAGT--A------------TTCCTGTATT---
gi|15 : GATGAAGAATGT----A-GATTTTTATGCTTCAAACATCCATTTT-CTt
gi|16 : taATGAGGAATGTTGAAATGA---TTATG-TTCCAACTTCCATTTT-T
gi|2 : ac--CTACTCCTCATAT---CTTGATGAACAA------C-AAAT-CATCAATATAA-T-TGC-ATTAGGCCCCT-GTCAA-TTA-TGTAAGATTCATAT--CCTGAGTC---AGG--T-CAG---C-----CATTA-GGGGTTGA-CCAATAA-----TACTTTAAAGAGGGTG------TTAGAATCC-TTGA-CAATCTTCTG--TACTTCCAC-TATATTT-AGGGGA--A--AATGC-CTTGACTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATGA---------------TTTTAATGCTT-AAACGTCCATTTT-ATGTTT-----TCACTAGGGATATGTTCATATTTGGAGA-GGATGGATAC-TTGA-GGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCAT
gi|3 : ---CTTGAGTCC-AGGGGTT-CAGG--CTCGATC--TA-AGGCTGGG-CCA---------
gi|3 : GGGGTTCAGGCTCGATCTAAGG-CT-GGGCCAATATGAatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|3 : cttgagtccaAGGCCT----TAAGG-CGTGGGACATTATGGC-ATACAGTGAAA-----------T--TTATAT----AAATCTTAG-AA-ATCTTCTTT--CTACTTC-CATATGTATTTGA-GAAaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|4 : cttgagtccaggggttcaggctcgatctaaggctgggccaatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaGGAGTTTAGGTCC----TATGGTCG-GGACCAGTATTGCTCTCTGGCAAA---------------ATGTATT---AAATCTTAGAAATAT-TTC-TT--TT--TTC-TGGNNNNNNNNNN-NNNNNN------NNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNNNNNNNN-NNCAAGG-----G---TTTAGGTCCTAAAG--T-AGGG--C-----C--TATATTATGGT-TCA----------ACAATGAATA-G-TA------TTG-AATGT-TAGA-AAAATCTCTC--
gi|5 : ctgggataATAATTATGAGTGCACTATGA----TTTTGTTTCGTTTGTGTAAAATTCATGATCCCTGGGTAA-AGGG--TTCACGTCC-----C--CA-AGGGTGGGGCCAATATGACTGTATATTGAACATG-TACATGCATTA-AATCTATAAAGAAATCACCTA--TATGT--ACATGTATTTAAGAAAA--AACAAAACGCTTGATTTTgacctaagttgtgaaattcagaaatgcat
gi|6 : TTCAGGCCC----TAGTG-TG-GGGATAATATGACTGTGTAGTGAA------------T--ATGT-TT---AAATCTTACAAA-ATCTTC-TT---------------ATGTTTGA-AAAAAAACCCCACTAAATGC
gi|7 : GG-TG-GGGCCAATATGA-CATAGAGTGAACATATTTATATTT--TTGTATTAAAAAATCTTAGAAA-ATCCAC--T--CTTCTTC-TATGTATATTTGA-GAAAAA------CTAAATttagttt
gi|8 : GGCCAATATGACCATATAGCAAA------------T--TTATATT---AAATCTTTAAAA-ATCT--------CACT---CACAGACATGTGA-GGAAGA------CTAAGTGCATGCTTATG
gi|9 : acGATGAGGAATGTTGAAATGATTTTTATGCTTCAAACTTCCA-TTT-TTACTTG--ATTCA-------TAT-TTTG-AA----AGATG-ATG---ACAT--GTGGACAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1111 3333333333333333 111111 111111 1111111 1 33333 222 11 22222222222 4444444444 222222 11 1 22222 1 1 222 11 11 55555555555555555555555555555555555555555555555555555 1 11 1 11 11 11 11 2222 2222 33333333 4444444444 11 11 1 1
lowQualScore : 2222 1 5 5 1 0 4444444444444444 777 5 1 666666 3 555 11 0 5 999999 0 2 0 5555555 9 5 5 0 5 3 11111 000 11 8 22222222222 8 1 6 1111111111 1 5 8 333333 8 5 8 8 6 11 2 7 2 77777 6 1 5 1 5 1 111 1 22 88 1 11 3 2 1 6 44444444444444444444444444444444444444444444444444444 1 2 5 88 1 5 88 1 1 88 77 66 4444 1 1 4444 55555555 1 0000000000 1 1 88 1 88 5 1 5
lowQualScore : .... . . . . . ................ ... . . ...... . ... .. . . ...... . . . ....... . . . . . . ..... ... .. . ........... . . . .......... . . . ...... . . . . . .. . . . ..... . . . . . . ... . .. .. . .. . . . . ..................................................... . . . .. . . .. . . .. .. .. .... . . .... ........ . .......... . . .. . .. . . .
lowQualScore : 1111 0 0 0 9 9 1111111111111111 888 7 7 888888 4 222 88 4 0 222222 8 2 4 2222222 2 8 2 0 2 2 55555 888 00 0 00000000000 0 4 7 6666666666 0 6 0 000000 0 0 0 0 0 00 5 3 0 77777 7 0 0 0 0 0 000 0 00 55 0 55 2 5 0 7 33333333333333333333333333333333333333333333333333333 0 5 5 55 0 0 00 0 0 00 55 00 0000 0 0 5555 55555555 0 5555555555 0 0 00 0 55 5 0 5
consensus : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTC-TT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTCGTAT----AGA-G-ATG---AC-T--G-GGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
Reference ( family-709 ) : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTC-TT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTCGTAT----AGA-G-ATG---AC-T--G-GGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
gi|1 : GGGGTTTAGGCCC----TAGGG-CA-GGGCCAATATTACCATATAGTAAA------------T--CTGTATT---TTACTTTAGAAA-ATCTTC-TTTTCTACTTC-TATATATATTTGA-CAAAAA------CTAAGTGCATGATTATGA-TGTCC-ATGAAGCCCTTTATCAAGATT-T-TAAAATTCA------CTGGGCCT-GGGG--T-CAGG--C-----C--TA-AGGATGGG-CCA---------TACAGTGAGGATG-TA------TCA-AATCT-TAGA-AAATCTTCTC--TATTTCCGTATGTATTTGAGAAAAACA--AAAATGCTTGATTTTGATGTCCATGAAGCCCTCTACTAAAAT---TTTGAAATTCATGGCTCCTATTGATGTGGGATGTTGAAATCATTTTTTTGCTTCAAACATCCATTTTGTCGTTTGGAA-TCA-------TA--TTCATAT----------------------------AACATGTGA-ACAA--AAGGCTTGAATGCAAATATGAGACTTCCTA-TATG--GGCTTTGATACTCAGGTGACCA--TTGGG-GCCT----GTTGGTCTCAAA----ACTAGCT--------TTAGCTATTTCTGCTGTTGATCCTATGACATTTGCTAAAAAAATGTTTCTTC-ACATA-TCTAACCAT
gi|10 : gGACGATACAGTGAT------------C--ATGTATT---AAAATATAGAAA-ATCTTC--T--CTACTTT-CATAAATTTTTGA-GAAAA
gi|11 : TGGGGAATGTCAAAATGATTTATATGATTCAAACTTCCATTTT-T
gi|12 : TCAGGCCC----TTTGG-CA-GTGCCAATATGACCATATAGTGAA------------C--ATGTATT---Accttat
gi|13 : -CCA---------TACAGTGAGGATG-TA------TTA-AAT-T-TAGG-AAA-CTTCTCTTTATTTCCt
gi|14 : aAGGCCC----TATTG-TG-GGGTCAATATGACCATATAGT--A------------TTCCTGTATT---
gi|15 : GATGAAGAATGT----A-GATTTTTATGCTTCAAACATCCATTTT-CTt
gi|16 : taATGAGGAATGTTGAAATGA---TTATG-TTCCAACTTCCATTTT-T
gi|2 : ac--CTACTCCTCATAT---CTTGATGAACAA------C-AAAT-CATCAATATAA-T-TGC-ATTAGGCCCCT-GTCAA-TTA-TGTAAGATTCATAT--CCTGAGTC---AGG--T-CAG---C-----CATTA-GGGGTTGA-CCAATAA-----TACTTTAAAGAGGGTG------TTAGAATCC-TTGA-CAATCTTCTG--TACTTCCAC-TATATTT-AGGGGA--A--AATGC-CTTGACTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATGA---------------TTTTAATGCTT-AAACGTCCATTTT-ATGTTT-----TCACTAGGGATATGTTCATATTTGGAGA-GGATGGATAC-TTGA-GGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCAT
gi|3 : ---CTTGAGTCC-AGGGGTT-CAGG--CTCGATC--TA-AGGCTGGG-CCA---------
gi|3 : GGGGTTCAGGCTCGATCTAAGG-CT-GGGCCAATATGAatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|3 : cttgagtccaAGGCCT----TAAGG-CGTGGGACATTATGGC-ATACAGTGAAA-----------T--TTATAT----AAATCTTAG-AA-ATCTTCTTT--CTACTTC-CATATGTATTTGA-GAAaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|4 : cttgagtccaggggttcaggctcgatctaaggctgggccaatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaGGAGTTTAGGTCC----TATGGTCG-GGACCAGTATTGCTCTCTGGCAAA---------------ATGTATT---AAATCTTAGAAATAT-TTC-TT--TT--TTC-TGGNNNNNNNNNN-NNNNNN------NNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNNNNNNNN-NNCAAGG-----G---TTTAGGTCCTAAAG--T-AGGG--C-----C--TATATTATGGT-TCA----------ACAATGAATA-G-TA------TTG-AATGT-TAGA-AAAATCTCTC--
gi|5 : ctgggataATAATTATGAGTGCACTATGA----TTTTGTTTCGTTTGTGTAAAATTCATGATCCCTGGGTAA-AGGG--TTCACGTCC-----C--CA-AGGGTGGGGCCAATATGACTGTATATTGAACATG-TACATGCATTA-AATCTATAAAGAAATCACCTA--TATGT--ACATGTATTTAAGAAAA--AACAAAACGCTTGATTTTgacctaagttgtgaaattcagaaatgcat
gi|6 : TTCAGGCCC----TAGTG-TG-GGGATAATATGACTGTGTAGTGAA------------T--ATGT-TT---AAATCTTACAAA-ATCTTC-TT---------------ATGTTTGA-AAAAAAACCCCACTAAATGC
gi|7 : GG-TG-GGGCCAATATGA-CATAGAGTGAACATATTTATATTT--TTGTATTAAAAAATCTTAGAAA-ATCCAC--T--CTTCTTC-TATGTATATTTGA-GAAAAA------CTAAATttagttt
gi|8 : GGCCAATATGACCATATAGCAAA------------T--TTATATT---AAATCTTTAAAA-ATCT--------CACT---CACAGACATGTGA-GGAAGA------CTAAGTGCATGCTTATG
gi|9 : acGATGAGGAATGTTGAAATGATTTTTATGCTTCAAACTTCCA-TTT-TTACTTG--ATTCA-------TAT-TTTG-AA----AGATG-ATG---ACAT--GTGGACAA
blockSeqs : GATC T T T G CATATTTATATTTT AAA T T TTTC A CCT AA T ACCCCA N GTGCACT G N N G G T TGATC CTA GT T CTCGATC T G G ATATGACTGT G T G CATGCA G C A G T TT C A A AAC G C . G . C TTG T TT . G CA T A T . TCACTAGGGATATGTTCATATTTGGAGAGGATGGATACTTGAGGG T C T TT C C GT G A . GG CT TACA T G TATT TGCAAAAA T . C C . T . A A T
blockSeqs : . T . . C TTCC . . T TTT A TT TG . . G NNNNN N T G . N T TAT CA . . CCAT . C . ATAAT T G . . . G . . A . C . . A . A TG T C A . GATTCATATTTTGAAAGATGATGACATGTGGA
blockSeqs : . A . . C ATT . . T TC A TC NN . . G TTGC . . . . G . G AA . . TCCC . A . T A T . . . C . . T . . G TG T C T .
blockSeqs : . A . . T CA . . T TT T TC TA . . . . . . CC . G . . T . . . . . . . . . G . . C G .
blockSeqs : . T . . T CA . . A TC A TC GA . . . . . . . T .
blockSeqs : . G . . C TA . . . . . . T .
blockSeqs : . . C TT . . . A .
blockSeqs : . A .
blockSeqCons : TC**** CC********* T*********
originalCons : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTC-TT--CTACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTCGTAT----AGA-G-ATG---AC-T--G-GGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
finalCons : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATT---AAATCTTAGAAA-ATCTTCTC----TACTTC-CATATATATTTGA-GAAAAA------CTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGGCC---------TA-AGGGTGGG-CCAT---------ACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTCGTAT----AGA-G-ATG---AC-T--G-GGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1111 3333333333333333 111 1111 111111 1111111 1 33333 222 11 22222222222 4444444444 222222 11 1 22222 1 1 222 11 11 55555555555555555555555555555555555555555555555555555 1 11 1 11 11 11 11 2222 2222 33333333 4444444444 11 11 1 1
lowQualScore : 2222 1 5 5 7 0 4444444444444444 000 5 1 7777 3 555 0 0 5 666666 0 2 0 5555555 9 5 5 0 5 3 11111 000 11 8 22222222222 8 1 6 1111111111 1 5 8 333333 8 5 8 8 6 11 2 7 2 77777 6 1 5 1 5 1 111 1 22 88 1 11 3 2 1 6 44444444444444444444444444444444444444444444444444444 1 2 5 88 1 5 88 1 1 88 77 66 4444 1 1 4444 55555555 1 0000000000 1 1 88 1 88 5 1 5
lowQualScore : .... . . . . . ................ ... . . .... . ... . . . ...... . . . ....... . . . . . . ..... ... .. . ........... . . . .......... . . . ...... . . . . . .. . . . ..... . . . . . . ... . .. .. . .. . . . . ..................................................... . . . .. . . .. . . .. .. .. .... . . .... ........ . .......... . . .. . .. . . .
lowQualScore : 1111 0 0 0 4 9 1111111111111111 000 7 7 0000 4 222 2 4 0 444444 8 2 4 2222222 2 8 2 0 2 2 55555 888 00 0 00000000000 0 4 7 6666666666 0 6 0 000000 0 0 0 0 0 00 5 3 0 77777 7 0 0 0 0 0 000 0 00 55 0 55 2 5 0 7 33333333333333333333333333333333333333333333333333333 0 5 5 55 0 0 00 0 0 00 55 00 0000 0 0 5555 55555555 0 5555555555 0 0 00 0 55 5 0 5
consensus : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATTAAA---TCTTAGAAA-ATCTTCT---CTACTTC-CATATATATTTGA-GAAAA------ACTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTCGTAT----AGA-G-ATG---AC-T--G-GGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
Reference ( family-709 ) : NGGGGTTCAGGCCC----TANGG-CG-GGGCCAATATGACCATATAGTGAA------------T--NTGTATTAAA---TCTTAGAAA-ATCTTCT---CTACTTC-CATATATATTTGA-GAAAA------ACTAAATGCATGATTATGA-TGCGC-ATGAGGCCCTTTGTCAAGTTT-TGTAAGATTCATG---CCTGGGTCC-GGGG--T-CAGG--C-----C--TA-AGGGTGGG-CCA---------TACANTGAAGATG-TA------TTA-AATCT-TAGA-AAATCTTCTC--TATTTCCACATGTATTTGAGAAAA--A--AAAACGCTTGATTTTGATGTCCATNAAGCNCTCCACTANAATTTGTTTGAANTCCATNNCTCCTACTGATGAGGAATGTCGAAATGATTTTTATGCTTCAAACNTCCATTTT-TTGTTTG--A-TCA-------TAT-TTCGTAT----AGA-G-ATG---AC-T--G-GGGCAACATNCGATACAATTAAGGCTCGAATGCAAATATNAGACCCCCTACCACGGTGGCTNCGATGCTNAGGCGACCAGGTTGGGCNCCTTACAGTTNGTNTCGAATATTACCAGCTTGCAAAAATTNGCTATTTCTGCTGTTGATCCTATGNCNTTTGCTANGAAAATGTTTCTTCAANATATTCTAACCAT
gi|1 : GGGGTTTAGGCCC----TAGGG-CA-GGGCCAATATTACCATATAGTAAA------------T--CTGTATTTTA---CTTTAGAAA-ATCTTCTTTTCTACTTC-TATATATATTTGA-CAAAA------ACTAAGTGCATGATTATGA-TGTCC-ATGAAGCCCTTTATCAAGATT-T-TAAAATTCA------CTGGGCCT-GGGG--T-CAGG--C-----C--TA-AGGATGGG-CCA---------TACAGTGAGGATG-TA------TCA-AATCT-TAGA-AAATCTTCTC--TATTTCCGTATGTATTTGAGAAAAACA--AAAATGCTTGATTTTGATGTCCATGAAGCCCTCTACTAAAAT---TTTGAAATTCATGGCTCCTATTGATGTGGGATGTTGAAATCATTTTTTTGCTTCAAACATCCATTTTGTCGTTTGGAA-TCA-------TA--TTCATAT----------------------------AACATGTGA-ACAA--AAGGCTTGAATGCAAATATGAGACTTCCTA-TATG--GGCTTTGATACTCAGGTGACCA--TTGGG-GCCT----GTTGGTCTCAAA----ACTAGCT--------TTAGCTATTTCTGCTGTTGATCCTATGACATTTGCTAAAAAAATGTTTCTTC-ACATA-TCTAACCAT
gi|10 : gGACGATACAGTGAT------------C--ATGTATTAAA---ATATAGAAA-ATCTTCT---CTACTTT-CATAAATTTTTGA-GAAAA------
gi|11 : TGGGGAATGTCAAAATGATTTATATGATTCAAACTTCCATTTT-T
gi|12 : TCAGGCCC----TTTGG-CA-GTGCCAATATGACCATATAGTGAA------------C--ATGTATTAccttat
gi|13 : -CCA---------TACAGTGAGGATG-TA------TTA-AAT-T-TAGG-AAA-CTTCTCTTTATTTCCt
gi|14 : aAGGCCC----TATTG-TG-GGGTCAATATGACCATATAGT--A------------TTCCTGTATT
gi|15 : GATGAAGAATGT----A-GATTTTTATGCTTCAAACATCCATTTT-CTt
gi|16 : taATGAGGAATGTTGAAATGA---TTATG-TTCCAACTTCCATTTT-T
gi|2 : ac---CTACTCCTCATAT---CTTGATGAACA------AC-AAAT-CATCAATATAA-T-TGC-ATTAGGCCCCT-GTCAA-TTA-TGTAAGATTCATAT--CCTGAGTC---AGG--T-CAG---C-----CATTA-GGGGTTGA-CCAATAA-----TACTTTAAAGAGGGTG------TTAGAATCC-TTGA-CAATCTTCTG--TACTTCCAC-TATATTT-AGGGGA--A--AATGC-CTTGACTTTGATGTCCATCAA-CGCTTCA-TACAATTTGTTTGAATTCCATTTTTCC--CTGATGA---------------TTTTAATGCTT-AAACGTCCATTTT-ATGTTT-----TCACTAGGGATATGTTCATATTTGGAGA-GGATGGATAC-TTGA-GGGCAACATTCCATACAATTAAGGCTCGAATGCAAATATCAGACCCCTTACCACGGTGACTGCAATGCTAAGGC--CTAGGTTGGGCTCCTTACAATTTGTGTCGAATATTACCAATTTGCAAAAATTTGTTATTTCTGC----------ATGCCCTT--CTATGAAAATG--TCTTCAAAATATTTTAACCAT
gi|3 : ---CTTGAGTCC-AGGGGTT-CAGG--CTCGATC--TA-AGGCTGGG-CCA---------
gi|3 : GGGGTTCAGGCTCGATCTAAGG-CT-GGGCCAATATGAatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|3 : cttgagtccaAGGCCT----TAAGG-CGTGGGACATTATGGC-ATACAGTGAAA-----------T--TTATAT-AAA---TCTTAGAAA--TCTTCTTT-CTACTTC-CATATGTATTTGA-GAAaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaggccttaaggcgtgggacattatggcatacagtgaaatttatataaatcttagaaatcttctttctacttccatatgtatttgagaa
gi|4 : cttgagtccaggggttcaggctcgatctaaggctgggccaatatgaaataaagcatacctgtttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaGGAGTTTAGGTCC----TATGGTCG-GGACCAGTATTGCTCTCTGGCAAA---------------ATGTATTAAA---TCTTAGAAATAT-TTCT---TT-TTTC-TGGNNNNNNNNNN-NNNNN------NNNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNNNNNNNN-NNCAAGG-----G---TTTAGGTCCTAAAG--T-AGGG--C-----C--TATATTATGGT-TCA----------ACAATGAATA-G-TA------TTG-AATGT-TAGA-AAAATCTCTC--
gi|5 : ctgggataATAATTATGAGTGCACTATGA----TTTTGTTTCGTTTGTGTAAAATTCATGATCCCTGGGTAA-AGGG--TTCACGTCC-----C--CA-AGGGTGGGGCCAATATGACTGTATATTGAACATG-TACATGCATTA-AATCTATAAAGAAATCACCTA--TATGT--ACATGTATTTAAGAAAA--AACAAAACGCTTGATTTTgacctaagttgtgaaattcagaaatgcat
gi|6 : TTCAGGCCC----TAGTG-TG-GGGATAATATGACTGTGTAGTGAA------------T--ATGT-TTAAA---TCTTACAAA-ATCTTCT---------------TATGTTTGA-AAAAAAACCCCACTAAATGC
gi|7 : GG-TG-GGGCCAATATGAC-ATAGAGTGAACATATTTATATTT--TTGTATTAAAAAATCTTAGAAA-ATCCACT---CTTCTTC-TATGTATATTTGA-GAAAA------ACTAAATttagttt
gi|8 : GGCCAATATGACCATATAGCAAA------------T--TTATATTAAA---TCTTTAAAA-ATCT-------CACT---CACAGACATGTGA-GGAAG------ACTAAGTGCATGCTTATG
gi|9 : acGATGAGGAATGTTGAAATGATTTTTATGCTTCAAACTTCCA-TTT-TTACTTG--ATTCA-------TAT-TTTG-AA----AGATG-ATG---ACAT--GTGGACAA