lowQualScore : 1111111
lowQualScore : 2222222 1111 33333333333333 111 6666666666 333333333333 4444444444 11 22222222 111 1111111 111 1111 22 1111111 11
lowQualScore : 1111111 7777 8 88888888888888 444 6 3 111 0000000000 9 2 444444444444 8 11 0000000000 00 00000000 77 6 77 2 555 0000000 4 4 777 66 4 111 2 4 9999 9999 66 888 0000 4 5 2 5 55 8888888 1 88 5 33 4
lowQualScore : ....... .... . .............. ... . . ... .......... . . ............ . .. .......... .. ........ .. . .. . ... ....... . . ... .. . ... . . .... .... .. ... .... . . . . .. ....... . .. . .. .
lowQualScore : 0000000 0000 0 44444444444444 666 0 5 888 0000000000 3 5 333333333333 0 44 8888888888 88 88888888 77 7 99 1 555 1111111 4 4 888 11 4 000 3 4 4444 4444 99 888 6666 6 0 3 7 66 9999999 7 44 7 66 4
consensus : NNNNNNNATATTGA------TTGATTGATTGTT----TGTT-TTA-CGTC-CCGTCG-AGANTNTTTCACTCATATTGAGACGTCACCA-TT-GTAG-ATGAAGGGCTGCAAA-N----TT----AGACCTAT-GCTTAGCGCNTAGAT-CGGC-TTTNAGCA---GTGAG-GGT-TCT--TTNGCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----C----CGA--AA---GAC----CCGTGA-TTCTCGC-TTCCAAATGCCGAGCGTTTGGCGAAGGAGC-AATC--ACTACCTATTTTAACG
Reference ( gi|3 ) : GTGTTGCATATTGAGGTCAGCTGATTGATTGTT----TGTT-TT--CATC-ACAGTG-AGAATATTTTATTCATATTGAGACATCACCA-TT-GCCA-ATGAAGGGCTGCAAA-G----TT----AGACCTAT-GCTTAGCACATAGATATGGC-TTTTATCA---GTGAG-AGT-TTT--TTTGCATGCC-A-CACCT-GCTGT-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----C----TGA--AA---GAC----CCATGA-TTCTCAC-TTCCATTTGCTGGGCTCTTAGTGAAGGAGC-AATC--ACTACTTATTTTAACG
gi|1 : ATATTGA------TTGATTGATTATTATTTTGTT-TTTTCGTCTACCGTGTAGACAATTTCACTCATTTTGAGAGA-CACCC-AT-GCGAGATGAAGGG-TGCAAATA----TTGAAGAGGCCTGTAGC--AGC------ATCTGGT-GTTGAGC----GTGAGTGGTATCT--TTAGCGGCCC-ACCACCTAGCTGCGGATGCCGG-GAGTCC--CTATC-TTTGTAAGGGTA-CATGATAC----TGG--AAAATGAG----CC-TGAGTTCCAAC-TTCCAATTGCTTGATCGTCAGC--AGGAGCAAATCGAATTAC--ATTTCA
gi|2 : cacagtaaGATTGATTATT----TGTTGTT--CGTC-CCGTTG-CAAATATTTCACTCATATTGAGACG---------------ATGAAGAGCTGCAAA-T----TT----AGACCTAT-GCTTAGCACCTG----CGGC-TTTCAACA---GTGAG-GAT-TCT--TTTGCGTCCC-A-CACAT-GCTGC-GACA-CGG-GA---C--CACTG-TC---------A-TAT----C----CGA--AA---GAC----CAGTGA-TTCTCAC-TTCTAGATGCCGAGCTCTTGTCGAAGGAGC-AATC--ATTACCTATGTTAACGcgtcttagttgtagcgggggccgtgtgcgaatacaggggctgaacgcacgactcccgatccgaagcgagggctttaccactactggcaccgctg
gi|11 : ATTATTTGAT----TGTT-TTA-CGTC-CCTTCA-AGGGTTTTTCACTCGTATTGTGATGTCACCA-TTTGTAG-GTGAAGTACCACAAA-CAAATTT----AGACCTAT-GCTTAGCGCtcttaggttttgacgaggtcggtccgagctcgaagaacgaccttccgatcacgaggcaaaagctctaccactgcgccaccg
gi|5 : TTGCT----TGCT-TTA-CGTC-CCATCG-AGATTGTTTCACTCATATTGAGACGTCACCA----------------GCTGCA-------------------CGT-GCTGAGCGTTCAGA----GC-CGT-AGCA---GTGAG-GGT-TCT--TTAGCGTGCC---------------GACG-CCA-AT---C--AACTG-TTTT----------AT----C----TGG--AA---GAC----CCGTGA-TTCTCGC-ATCTAAATACTTAGTGTTTGGCGAAGGAGC-AATC--ATTATCTATtcagggccgtagca
gi|12 : gTTGTT----TGTT-TTA-CGTC-CCGTCG-AGAATTTTTCACTCTCGTAGAGACGTCACCA-gtgatagtcgtactggtttgac
gi|22 : tTTCATATTGAGAAGTCACCAGTT-GTAG-TTGAAG---TACCAC-T----TT----AGACCCAcaaaatagacccgttaattaaggaccgtaacagtgaattaaggttctttaaggt
gi|6 : A-ATTGAGGGCTGCAAA-G----TT----AGACCTAT-GCTTAGCACATAGATATGGCTTTTTATCAACCGTGAG-AGT-TTTTGTTTGCATGCC-A-CA-CT-GCTGT-GACA-CGG-TG---C--CTCCG-TTTTTAAGGTTAGTAT----C----TGATCAG---AAC----CAATGA--TCTC-C-TTCCATTTGC--GGCT-TTAGTGAAGGA-C--ATCA-ACTACTTATTTTAAC
gi|7 : ---GTGAG-GGT-TCC--GTTAAAAGTCGA-CACCT-GG-GTCGATA-TGC-GA---C--CTATA-TTTTT--GATTG-TAT----C----AGA--AG---GAC----CCGTAA-TTCTCAC-TTCTAAATGCCAAACATTTGGAGAAGGAGC-ATCC--ACTACTGATGTTAATGagtaatgaggtttgga
gi|8 : G-ATT-CTT--TTTAAATGTA-A-CACCT-ACTGC---CA-CAA-GA---CAGCTCAG-TTTTGTAGGTTG-TGT----CCAAATTA--AA---GAC----CCACGA-CTTTCACGTTTCA--TGCTGACCGTCTGGCCATAAAAC-AGTT--ACTATCCACTTTAACtgtcaagtttctagcacccgaggcacaaaggggt
gi|4 : attgtttttgggagctgatctTT--TTAGCATGCC-AACACCT-ACCGT-G-CA-TGT-GA---C--CTCCGATTTTGAAGGTCA-TAT----C----TGA--AA---GAC----CTGTGA-TCTTTGC-TTCTAAATGCCGAGCATTTGTCAAAGGAGC-AGTT--ACTGCTTATTTTCACG
gi|18 : atgtggcccatgggcctcttgCGTGCC-AACACCT-G---T-GACA-CGGAGA---C--TTCCG-TTTTTAAAACCA-TGT----C----CAA--AA---GACCCGGCCATGA-TTCTtcttgggtttgatgcagccaaggcacgagtggggttgaactcacaacctctcgggaagctctaaccactgagcta
gi|21 : -CGCCT-GCCGT-GACA-CAG-GA---C--CTCCA--TTTTATGGCTA-TAT----C----CGt
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): CTAACTTTCTAAATGTACGCGTCAGCACTTTGCGAAGTTGCAAATCCACTACTTATTTAACGACTTAAGTTTGACTCGCCACTCCGAGCACGGCTCGAAACGCACGACTCCCGATCACGAAGCTAGAGTTCAACCACTTAAGCCACCGTGAC
Unaligned ( gi|10 ): ATTCTTACTCCTAAATATCGAACGTTTAGTCGAATGACCACTCTCCACTTATTTTATAATGACTTAGATTTGAAGCGGCTAAATAATCAGAGCTCAATCCCACTACCTACAATGTATACACGAAGAAGAGGAAGCTCTAACTACTGGGTCA
Unaligned ( gi|13 ): CTACTTATTTTAACGTCTTAGGTTTAACGCAGCCGGTTCGAGCGCGGGACTCGAACTCACGACCTCCCGATTATGAGACAAAAGCACTACCACTGAGCCACCTT
Unaligned ( gi|14 ): AGCTACTACCTATTTTCACGTGCTTACGTTTGTCTTAGTCATGATGTGAGAGGTGCTCAAACTCAAAAACTCACGGTTGCGAAGTGAAAGTTCTATAACCACTG
Unaligned ( gi|15 ): TATTGAGACGTCACAAGTTGTTGATACTATGCATAGCGCTCAGTGCCATATCAGTGAGGTTTCTTTAGAGTGCGGTCTATCTTTATCTGAGGTCGGAAACCC
Unaligned ( gi|16 ): TGTTTCATGCTTGTTTTATGTCCCTTCAGGAAATCCTTACTCATTGAGACGTGATCAATTTGATGTGTTAAACGCTCAGGTCGGTATTGGTGAAGG
Unaligned ( gi|17 ): GATGTGGCCCATGGGCCTCTTGTTTTCATTGGTGTAGCACCTATTATATGGAGATGAAGATCTTATAGTTTTGAAGTTTATATATTTGA
Unaligned ( gi|19 ): GTTAGTTTGTTTACTTCCCATCGAAAAGTTTTCACCCATAATAAGACGCCACTAACTTCA
Unaligned ( gi|20 ): GGTAAAGTACCACAAATATAGACCAGTGCTTTGCACTCGGGGGCCGCAGTATTGA
Alignments
lowQualScore : 555555 1111 333333333 11111111 1111111111 33333333333333333333 1 1111 11111111 11111 11
lowQualScore : 777777 2222 5 5 77 1 1 1 2 0 666666666 0 44444444 1111111111 5 1 4 33333333333333333333 3 3 5 5 66 66 55 4 2 4 0000 0 4 4 777 55 4 777 1 4 8888 0 66 11111111 00000 99 4 4 1 77 4 4 0 0 4 00 4
lowQualScore : ...... .... . . .. . . . . . ......... . ........ .......... . . . .................... . . . . .. .. .. . . . .... . . . ... .. . ... . . .... . .. ........ ..... .. . . . .. . . . . . .. .
lowQualScore : 555555 1111 7 4 99 7 0 0 2 1 333333333 1 99999999 2222222222 7 7 0 88888888888888888888 7 2 0 0 11 11 44 4 0 0 9999 7 0 0 000 55 0 222 2 0 5555 5 11 66666666 33333 55 4 4 1 11 7 4 1 1 4 66 4
consensus : NNNNNNNATATTGAGGTCAGCTGATTGATTG----TTTG-TTTTACGTC--CCGTCGAGAATNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAA-NTT----AGACCTAT-GCTTAGCGCNCAGAT-C-GGCTT----TCANCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--A----A---GACCCG----TGA--TTCTCGCTTCTAAATGC-CGAGCGTTTGG-CGAAGGAGC-AATC--ACTACTTATTTTAACG
Reference ( family-703 ) : NNNNNNNATATTGA------TTGATTGATTG----TTTG-TTTTACGTC--CCGTCGAGANTNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAA-NTT----AGACCTAT-GCTTAGCGCNTAGAT-C-GGCTT----TNAGCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--A----A---GACCCG----TGA--TTCTCGCTTCCAAATGC-CGAGCGTTTGG-CGAAGGAGC-AATC--ACTACCTATTTTAACG
gi|1 : ATATTGA------TTGATTGATTATTATTTTGTTTTTTCGTCTACCGTGTAGACAATTTCACTCATTTTGAGA-GACACCC-ATGCGAGATGAAGGG-T----GCAAATATTGAAGAGGCCTGTAGC--AGC------AT-CTGGTGT----TGAGC-GTGAGTGGTATC--T--TTA-GCGGCCC-ACCACCTAGCTGCGGATGCCGG-GAGTCC--CTATC-TTTGTAAGGGTA-CATGATACTGG--A----AAATGAGCC-----TGAG-TTCCAACTTCCAATTGCTTGATCG-TCAG-C--AGGAGCAAATCGAATTAC--ATTTCA
gi|10 : cacagtaaA--TTCTTACTCCTAAATAT-CGAACGTTTAGTCGAATGACC-ACTC--TCCACTTATTTTAcgtcttagttgtagcgggggccgtgtgcgaatacaggggctgaacgcacgactcccgatccgaagcgagggctttaccactactggcaccgctg
gi|11 : ATTATTTG----ATTG-TTTTACGTC--CCTTCAAGGGTTTTTCACTCGTATTGTGATGTCACCATTTGT-AGGTGAAGTACCACAAACAAA-TTT----AGACCTAT-GCTTAGCGCTCAGtaatgacttagatttgaagcggctaaataatcagagctcaatcccactacctacaatgtatacacgaagaagaggaagctctaactactgggtca
gi|12 : TTG----TTTG-TTTTACGTC--CCGTCGAGAATTTTTCACTCTCGTAGAGACGTCACCA-ggccgtagca
gi|15 : tTATTGAGACGTCACAAGTTGT----TGA------------------T----A---CTAT-GCATAGCGCTCAG-T----GCCA----T-ATCAGTGAG-GTT-TC--T--TTA-GAGTGCcaaaatagacccgttaattaaggaccgtaacagtgaattaaggttctttaaggt
gi|16 : TG----CTTG-TTTTATGTC--CCTTCAGGAAATCCTTACTC--ATTGAGACGTGATCA-ggtctatctttatctgaggtcggaaaccc
gi|18 : tgtttcaCGTGCC-AACACCT-GT----GACA-CGGAGA---C--TTCCG-TTTTTAAAACCA-TGT----CCAA--A----A---GACCCGGCCATGA--TTCTatttgatgtgttaaacgctcaggtcggtattggtgaagg
gi|2 : GATTGATTA----TTTG-TTGTTCGTC--CCGTTGCAAATATTTCACTCATATTGAGACG--------------ATGAAGAGCT----GCAAA-TTT----AGACCTAT-GCTTAGCACCTG----C-GGCTT----TCAACAGTGAG-GAT-TC--T--TTT-GCGTCCC-A-CACAT-GCTGC-GACA-CGG-GA---C--CACTG-TC---------A-TAT----CCGA--A----A---GACCAG----TGA--TTCTCACTTCTAGATGC-CGAGCTCTTGT-CGAAGGAGC-AATC--ATTACCTATGTTAACGt
gi|21 : -CGCCT-GCCGT-GACA-CAG-GA---C--CTCCA--TTTTATGGCTA-TAT----CCGtcttaggttttgacgaggtcggtccgagctcgaagaacgaccttccgatcacgaggcaaaagctctaccactgcgccaccg
gi|22 : taccacaaaagTCATATTGAGAAGTCACCAGTTGT-AGTTGAAG---T----ACCAC-TTT----AGACCCA
gi|3 : tATATTGAGGTCAGCTGATTGATTG----TTTG-TTTT-CATC--ACAGTGAGAATATTTTATTCATATTGAGACATCACCA-TTGC-CAATGAAGGGCT----GCAAA-GTT----AGACCTAT-GCTTAGCACATAGATAT-GGCTT----TTATCAGTGAG-AGT-TT--T--TTT-GCATGCC-A-CACCT-GCTGT-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CTGA--A----A---GACCCA----TGA--TTCTCACTTCCATTTGC-TGGGCTCTTAG-TGAAGGAGC-AATC--ACTACTTATTTTAACG
gi|4 : gtgttgc--T--TTA-GCATGCC-AACACCT-ACCGT-G-CA-TGT-GA---C--CTCCGATTTTGAAGGTCA-TAT----CTGA--A----A---GACCTG----TGA--TCTTTGCTTCTAAATGC-CGAGCATTTGT-CAAAGGAGC-AGTT--ACTGCTTATTTTCACG
gi|5 : atgtggcccatgggcctcttgtTTG----CTTG-CTTTACGTC--CCATCGAGATTGTTTCACTCATATTGAGACGTCACCA---------------GCT----GCA---------------CGT-GCTGAGCGTTCAGAG-C-CG--------TAGCAGTGAG-GGT-TC--T--TTA-GCGTGCCGA-CGCCA-ATC-------------A---A--CT--G-TTTT----------AT----CTGG--A----A---GACCCG----TGA--TTCTCGCATCTAAATAC-TTAGTGTTTGG-CGAAGGAGC-AATC--ATTATCTATtcttgggtttgatgcagccaaggcacgagtggggttgaactcacaacctctcgggaagctctaaccactgagcta
gi|6 : gAGGGCT----GCAAA-GTT----AGACCTAT-GCTTAGCACATAGATAT-GGCTTTTTATCAACCGTGAG-AGT-TT--TTGTTT-GCATGCC-A-CA-CT-GCTGT-GACA-CGG-TG---C--CTCCG-TTTTTAAGGTTAGTAT----CTGATCA----G---AACCAA----TGA---TCTC-CTTCCATTTGC---GGC-TTTAG-TGAAGGA-C--ATCA-ACTACTTATTTTAACgtgatagtcgtactggtttgac
gi|7 : aattgGTGAG-GGT-TCCGT--TAA-AAGT-CG-A-CACCT-GGGTC-GATA-TGC-GA---C--CTATA-TTTTT--GATTG-TAT----CAGA--A----G---GACCCG----TAA--TTCTCACTTCTAAATGC-CAAACATTTGG-AGAAGGAGC-ATCC--ACTACTGATGTTAATGagtaatgaggtttgga
gi|8 : -GAT-TC--T--TTTTAAATGTA-A-CACCT-ACTGC---CA-CAA-GA---CAGCTCAG-TTTTGTAGGTTG-TGT----CCAA--ATTAAA---GACCCA----CGACTTTCACGTTTC---ATGC-TGACCGTCTGG-CCATAAAAC-AGTT--ACTATCCACTTTAACtgtcaagtttctagcacccgaggcacaaaggggt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTAACTTTCTAAATGTACGCGTCAGCACTTTGCGAAGTTGCAAATCCACTACTTATTTAACGACTTAAGTTTGACTCGCCACTCCGAGCACGGCTCGAAACGCACGACTCCCGATCACGAAGCTAGAGTTCAACCACTTAAGCCACCGTGAC
Unaligned ( gi|13 ): CTACTTATTTTAACGTCTTAGGTTTAACGCAGCCGGTTCGAGCGCGGGACTCGAACTCACGACCTCCCGATTATGAGACAAAAGCACTACCACTGAGCCACCTT
Unaligned ( gi|14 ): AGCTACTACCTATTTTCACGTGCTTACGTTTGTCTTAGTCATGATGTGAGAGGTGCTCAAACTCAAAAACTCACGGTTGCGAAGTGAAAGTTCTATAACCACTG
Unaligned ( gi|17 ): GATGTGGCCCATGGGCCTCTTGTTTTCATTGGTGTAGCACCTATTATATGGAGATGAAGATCTTATAGTTTTGAAGTTTATATATTTGA
Unaligned ( gi|19 ): GTTAGTTTGTTTACTTCCCATCGAAAAGTTTTCACCCATAATAAGACGCCACTAACTTCA
Unaligned ( gi|20 ): GGTAAAGTACCACAAATATAGACCAGTGCTTTGCACTCGGGGGCCGCAGTATTGA
Alignments
lowQualScore : 222222 1111 11 333333333 11111111 1111111111 333333 111111 1 1111 11111111 11111 1111111
lowQualScore : 888888 2222 11 77 1 0 1 2 0 666666666 0 44444444 1111111111 5 1 4 33 444444 888888 1 3 5 5 66 66 55 4 2 4 0000 0 4 4 777 55 4 777 1 4 8888 0 66 11111111 00000 99 4 0 0 4444444 55 4 4 55 99 0
lowQualScore : ...... .... .. .. . . . . . ......... . ........ .......... . . . .. ...... ...... . . . . .. .. .. . . . .... . . . ... .. . ... . . .... . .. ........ ..... .. . . . ....... .. . . .. .. .
lowQualScore : 555555 1111 11 99 7 3 0 2 1 333333333 1 99999999 2222222222 7 7 0 44 999999 777777 0 2 0 0 11 11 44 4 0 0 9999 7 0 0 000 55 0 222 2 0 5555 5 11 66666666 33333 55 4 4 1 5555555 22 0 0 55 55 4
consensus : NNNNNNNATATTGAGGTCAGCTGATTGATTGTT----TGTTTTA-CGTC--CCGTCGAGAATNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAA-NTT----AGACCTAT-GCTTAGCGCNCAGAT-C-GGCTT----TCANCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--A----A---GACCCG----TGA--TTCTCGCTTCTAAATGC---CG--AGCGTTTGG-CGAAGGAGC-AA--TC--ACTACTTATTTTAACG
Reference ( family-703 ) : NNNNNNNATATTGAGGTCAGCTGATTGATTGTT----TGTTTTA-CGTC--CCGTCGAGAATNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAA-NTT----AGACCTAT-GCTTAGCGCNCAGAT-C-GGCTT----TCANCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--A----A---GACCCG----TGA--TTCTCGCTTCTAAATGC---CG--AGCGTTTGG-CGAAGGAGC-AA--TC--ACTACTTATTTTAACG
gi|1 : ATATTGA------TTGATTGATTATTATTTTGTTTTTTCGTCTACCGTGTAGACAATTTCACTCATTTTGAGA-GACACCC-ATGCGAGATGAAGGG-T----GCAAATATTGAAGAGGCCTGTAGC--AGC------AT-CTGGTGT----TGAGC-GTGAGTGGTATC--T--TTA-GCGGCCC-ACCACCTAGCTGCGGATGCCGG-GAGTCC--CTATC-TTTGTAAGGGTA-CATGATACTGG--A----AAATGAGCC-----TGAG-TTCCAACTTCCAATTGCT--TG--ATCG-TCAG-C--AGGAGCAAA--TCGAATTAC--ATTTCA
gi|10 : cacagtaaA--TTCTTACTCCTAAATAT---CG--AACGTTTAGTCGAATGACC-AC--TC--TCCACTTATTTTAcgtcttagttgtagcgggggccgtgtgcgaatacaggggctgaacgcacgactcccgatccgaagcgagggctttaccactactggcaccgctg
gi|11 : ATTATTTGAT----TGTTTTA-CGTC--CCTTCAAGGGTTTTTCACTCGTATTGTGATGTCACCATTTGT-AGGTGAAGTACCACAAACAAA-TTT----AGACCTAT-GCTTAGCGCTCAGtaatgacttagatttgaagcggctaaataatcagagctcaatcccactacctacaatgtatacacgaagaagaggaagctctaactactgggtca
gi|12 : TTGTT----TGTTTTA-CGTC--CCGTCGAGAATTTTTCACTCTCGTAGAGACGTCACCA-ggccgtagca
gi|15 : tTATTGAGACGTCACAAGTTGT----TGA------------------T----A---CTAT-GCATAGCGCTCAG-T----GCCA----T-ATCAGTGAG-GTT-TC--T--TTA-GAGTGCcaaaatagacccgttaattaaggaccgtaacagtgaattaaggttctttaaggt
gi|16 : TGCT----TGTTTTA-TGTC--CCTTCAGGAAATCCTTACTC--ATTGAGACGTGATCA-ggtctatctttatctgaggtcggaaaccc
gi|18 : tgtttcaCGTGCC-AACACCT-GT----GACA-CGGAGA---C--TTCCG-TTTTTAAAACCA-TGT----CCAA--A----A---GACCCGGCCATGA--TTCTatttgatgtgttaaacgctcaggtcggtattggtgaagg
gi|2 : GATTGATTATT----TGTTGTT-CGTC--CCGTTGCAAATATTTCACTCATATTGAGACG--------------ATGAAGAGCT----GCAAA-TTT----AGACCTAT-GCTTAGCACCTG----C-GGCTT----TCAACAGTGAG-GAT-TC--T--TTT-GCGTCCC-A-CACAT-GCTGC-GACA-CGG-GA---C--CACTG-TC---------A-TAT----CCGA--A----A---GACCAG----TGA--TTCTCACTTCTAGATGC---CG--AGCTCTTGT-CGAAGGAGC-AA--TC--ATTACCTATGTTAACGt
gi|21 : -CGCCT-GCCGT-GACA-CAG-GA---C--CTCCA--TTTTATGGCTA-TAT----CCGtcttaggttttgacgaggtcggtccgagctcgaagaacgaccttccgatcacgaggcaaaagctctaccactgcgccaccg
gi|22 : taccacaaaagTCATATTGAGAAGTCACCAGTTGT-AGTTGAAG---T----ACCAC-TTT----AGACCCA
gi|3 : tATATTGAGGTCAGCTGATTGATTGTT----TGTTTT--CATC--ACAGTGAGAATATTTTATTCATATTGAGACATCACCA-TTGC-CAATGAAGGGCT----GCAAA-GTT----AGACCTAT-GCTTAGCACATAGATAT-GGCTT----TTATCAGTGAG-AGT-TT--T--TTT-GCATGCC-A-CACCT-GCTGT-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CTGA--A----A---GACCCA----TGA--TTCTCACTTCCATTTGC---TG--GGCTCTTAG-TGAAGGAGC-AA--TC--ACTACTTATTTTAACG
gi|4 : gtgttgc--T--TTA-GCATGCC-AACACCT-ACCGT-G-CA-TGT-GA---C--CTCCGATTTTGAAGGTCA-TAT----CTGA--A----A---GACCTG----TGA--TCTTTGCTTCTAAATGC---CG--AGCATTTGT-CAAAGGAGC-AG--TT--ACTGCTTATTTTCACG
gi|5 : atgtggcccatgggcctcttgtTTGCT----TGCTTTA-CGTC--CCATCGAGATTGTTTCACTCATATTGAGACGTCACCA---------------GCT----GCA---------------CGT-GCTGAGCGTTCAGA-----GCCG----T-AGCAGTGAG-GGT-TC--T--TTA-GCGTGCCGA-CGCCA-ATC-------------A---A--CT--G-TTTT----------AT----CTGG--A----A---GACCCG----TGA--TTCTCGCATCTAAATAC---TT--AGTGTTTGG-CGAAGGAGC-AA--TC--ATTATCTATtcttgggtttgatgcagccaaggcacgagtggggttgaactcacaacctctcgggaagctctaaccactgagcta
gi|6 : gAGGGCT----GCAAA-GTT----AGACCTAT-GCTTAGCACATAGATAT-GGCTTTTTATCAACCGTGAG-AGT-TT--TTGTTT-GCATGCC-A-CA-CT-GCTGT-GACA-CGG-TG---C--CTCCG-TTTTTAAGGTTAGTAT----CTGATCA----G---AACCAA----TGA---TCTC-CTTCCATTTGC-------GGC-TTTAG-TGAAGGA-C--A--TCA-ACTACTTATTTTAACgtgatagtcgtactggtttgac
gi|7 : aattgGTGAG-GGT-TCCGT--TAA-AAGT-CG-A-CACCT-GGGTC-GATA-TGC-GA---C--CTATA-TTTTT--GATTG-TAT----CAGA--A----G---GACCCG----TAA--TTCTCACTTCTAAATGC---CA--AACATTTGG-AGAAGGAGC-AT--CC--ACTACTGATGTTAATGagtaatgaggtttgga
gi|8 : -GAT-TC--T--TTTTAAATGTA-A-CACCT-ACTGC---CA-CAA-GA---CAGCTCAG-TTTTGTAGGTTG-TGT----CCAA--ATTAAA---GACCCA----CGACTTTCACGTTTC---ATGC---TG--ACCGTCTGG-CCATAAAAC-AG--TT--ACTATCCACTTTAACtgtcaagtttctagcacccgaggcacaaaggggt
gi|9 : attgtttttgggagctgatctTTCTAAATGTACGCGTCAGCACTTTG-CGAAGTTGC-AAATCC--ACTACTTA-TTTAACG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTACTTATTTTAACGTCTTAGGTTTAACGCAGCCGGTTCGAGCGCGGGACTCGAACTCACGACCTCCCGATTATGAGACAAAAGCACTACCACTGAGCCACCTT
Unaligned ( gi|14 ): AGCTACTACCTATTTTCACGTGCTTACGTTTGTCTTAGTCATGATGTGAGAGGTGCTCAAACTCAAAAACTCACGGTTGCGAAGTGAAAGTTCTATAACCACTG
Unaligned ( gi|17 ): GATGTGGCCCATGGGCCTCTTGTTTTCATTGGTGTAGCACCTATTATATGGAGATGAAGATCTTATAGTTTTGAAGTTTATATATTTGA
Unaligned ( gi|19 ): GTTAGTTTGTTTACTTCCCATCGAAAAGTTTTCACCCATAATAAGACGCCACTAACTTCA
Unaligned ( gi|20 ): GGTAAAGTACCACAAATATAGACCAGTGCTTTGCACTCGGGGGCCGCAGTATTGA
Alignments
lowQualScore : 222222 1111 11 333333333 11111111 1111111111 333333 111111 1 1111 11111111 11111 1111111
lowQualScore : 888888 2222 11 77 1 0 1 2 0 666666666 0 44444444 1111111111 5 1 4 33 444444 888888 1 3 5 5 66 66 55 4 2 4 0000 0 4 4 777 55 4 777 1 4 8888 0 66 11111111 00000 99 4 0 0 4444444 55 4 4 55 99 0
lowQualScore : ...... .... .. .. . . . . . ......... . ........ .......... . . . .. ...... ...... . . . . .. .. .. . . . .... . . . ... .. . ... . . .... . .. ........ ..... .. . . . ....... .. . . .. .. .
lowQualScore : 555555 1111 11 99 7 3 0 2 1 333333333 1 99999999 2222222222 7 7 0 44 999999 777777 0 2 0 0 11 11 44 4 0 0 9999 7 0 0 000 55 0 222 2 0 5555 5 11 66666666 33333 55 4 4 1 5555555 22 0 0 55 55 4
consensus : NNNNNNNATATTGAGGTCAGCTGATTGATTGTT----TGTTTTA-CGTC--CCGTCGAGAATNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAA-NTT----AGACCTAT-GCTTAGCGCNCAGAT-C-GGCTT----TCANCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--A----A---GACCCG----TGA--TTCTCGCTTCTAAATGC---CG--AGCGTTTGG-CGAAGGAGC-AA--TC--ACTACTTATTTTAACG
Reference ( family-703 ) : NNNNNNNATATTGAGGTCAGCTGATTGATTGTT----TGTTTTA-CGTC--CCGTCGAGAATNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAA-NTT----AGACCTAT-GCTTAGCGCNCAGAT-C-GGCTT----TCANCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--A----A---GACCCG----TGA--TTCTCGCTTCTAAATGC---CG--AGCGTTTGG-CGAAGGAGC-AA--TC--ACTACTTATTTTAACG
gi|1 : ATATTGA------TTGATTGATTATTATTTTGTTTTTTCGTCTACCGTGTAGACAATTTCACTCATTTTGAGA-GACACCC-ATGCGAGATGAAGGG-T----GCAAATATTGAAGAGGCCTGTAGC--AGC------AT-CTGGTGT----TGAGC-GTGAGTGGTATC--T--TTA-GCGGCCC-ACCACCTAGCTGCGGATGCCGG-GAGTCC--CTATC-TTTGTAAGGGTA-CATGATACTGG--A----AAATGAGCC-----TGAG-TTCCAACTTCCAATTGCT--TG--ATCG-TCAG-C--AGGAGCAAA--TCGAATTAC--ATTTCA
gi|10 : cacagtaaA--TTCTTACTCCTAAATAT---CG--AACGTTTAGTCGAATGACC-AC--TC--TCCACTTATTTTAcgtcttagttgtagcgggggccgtgtgcgaatacaggggctgaacgcacgactcccgatccgaagcgagggctttaccactactggcaccgctg
gi|11 : ATTATTTGAT----TGTTTTA-CGTC--CCTTCAAGGGTTTTTCACTCGTATTGTGATGTCACCATTTGT-AGGTGAAGTACCACAAACAAA-TTT----AGACCTAT-GCTTAGCGCTCAGtaatgacttagatttgaagcggctaaataatcagagctcaatcccactacctacaatgtatacacgaagaagaggaagctctaactactgggtca
gi|12 : TTGTT----TGTTTTA-CGTC--CCGTCGAGAATTTTTCACTCTCGTAGAGACGTCACCA-ggccgtagca
gi|15 : tTATTGAGACGTCACAAGTTGT----TGA------------------T----A---CTAT-GCATAGCGCTCAG-T----GCCA----T-ATCAGTGAG-GTT-TC--T--TTA-GAGTGCcaaaatagacccgttaattaaggaccgtaacagtgaattaaggttctttaaggt
gi|16 : TGCT----TGTTTTA-TGTC--CCTTCAGGAAATCCTTACTC--ATTGAGACGTGATCA-ggtctatctttatctgaggtcggaaaccc
gi|18 : tgtttcaCGTGCC-AACACCT-GT----GACA-CGGAGA---C--TTCCG-TTTTTAAAACCA-TGT----CCAA--A----A---GACCCGGCCATGA--TTCTatttgatgtgttaaacgctcaggtcggtattggtgaagg
gi|2 : GATTGATTATT----TGTTGTT-CGTC--CCGTTGCAAATATTTCACTCATATTGAGACG--------------ATGAAGAGCT----GCAAA-TTT----AGACCTAT-GCTTAGCACCTG----C-GGCTT----TCAACAGTGAG-GAT-TC--T--TTT-GCGTCCC-A-CACAT-GCTGC-GACA-CGG-GA---C--CACTG-TC---------A-TAT----CCGA--A----A---GACCAG----TGA--TTCTCACTTCTAGATGC---CG--AGCTCTTGT-CGAAGGAGC-AA--TC--ATTACCTATGTTAACGt
gi|21 : -CGCCT-GCCGT-GACA-CAG-GA---C--CTCCA--TTTTATGGCTA-TAT----CCGtcttaggttttgacgaggtcggtccgagctcgaagaacgaccttccgatcacgaggcaaaagctctaccactgcgccaccg
gi|22 : taccacaaaagTCATATTGAGAAGTCACCAGTTGT-AGTTGAAG---T----ACCAC-TTT----AGACCCA
gi|3 : tATATTGAGGTCAGCTGATTGATTGTT----TGTTTT--CATC--ACAGTGAGAATATTTTATTCATATTGAGACATCACCA-TTGC-CAATGAAGGGCT----GCAAA-GTT----AGACCTAT-GCTTAGCACATAGATAT-GGCTT----TTATCAGTGAG-AGT-TT--T--TTT-GCATGCC-A-CACCT-GCTGT-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CTGA--A----A---GACCCA----TGA--TTCTCACTTCCATTTGC---TG--GGCTCTTAG-TGAAGGAGC-AA--TC--ACTACTTATTTTAACG
gi|4 : gtgttgc--T--TTA-GCATGCC-AACACCT-ACCGT-G-CA-TGT-GA---C--CTCCGATTTTGAAGGTCA-TAT----CTGA--A----A---GACCTG----TGA--TCTTTGCTTCTAAATGC---CG--AGCATTTGT-CAAAGGAGC-AG--TT--ACTGCTTATTTTCACG
gi|5 : atgtggcccatgggcctcttgtTTGCT----TGCTTTA-CGTC--CCATCGAGATTGTTTCACTCATATTGAGACGTCACCA---------------GCT----GCA---------------CGT-GCTGAGCGTTCAGA-----GCCG----T-AGCAGTGAG-GGT-TC--T--TTA-GCGTGCCGA-CGCCA-ATC-------------A---A--CT--G-TTTT----------AT----CTGG--A----A---GACCCG----TGA--TTCTCGCATCTAAATAC---TT--AGTGTTTGG-CGAAGGAGC-AA--TC--ATTATCTATtcttgggtttgatgcagccaaggcacgagtggggttgaactcacaacctctcgggaagctctaaccactgagcta
gi|6 : gAGGGCT----GCAAA-GTT----AGACCTAT-GCTTAGCACATAGATAT-GGCTTTTTATCAACCGTGAG-AGT-TT--TTGTTT-GCATGCC-A-CA-CT-GCTGT-GACA-CGG-TG---C--CTCCG-TTTTTAAGGTTAGTAT----CTGATCA----G---AACCAA----TGA---TCTC-CTTCCATTTGC-------GGC-TTTAG-TGAAGGA-C--A--TCA-ACTACTTATTTTAACgtgatagtcgtactggtttgac
gi|7 : aattgGTGAG-GGT-TCCGT--TAA-AAGT-CG-A-CACCT-GGGTC-GATA-TGC-GA---C--CTATA-TTTTT--GATTG-TAT----CAGA--A----G---GACCCG----TAA--TTCTCACTTCTAAATGC---CA--AACATTTGG-AGAAGGAGC-AT--CC--ACTACTGATGTTAATGagtaatgaggtttgga
gi|8 : -GAT-TC--T--TTTTAAATGTA-A-CACCT-ACTGC---CA-CAA-GA---CAGCTCAG-TTTTGTAGGTTG-TGT----CCAA--ATTAAA---GACCCA----CGACTTTCACGTTTC---ATGC---TG--ACCGTCTGG-CCATAAAAC-AG--TT--ACTATCCACTTTAACtgtcaagtttctagcacccgaggcacaaaggggt
gi|9 : attgtttttgggagctgatctTTCTAAATGTACGCGTCAGCACTTTG-CGAAGTTGC-AAATCC--ACTACTTA-TTTAACG
blockSeqs : GGTCAG . A . T T G TTTGTAGG TACCACAA AATTT . T G TC GATAT TTTATC T A . . CG TG TT G A . TGC . A . AG A TAA C G . TC TTAAA GGCCA CT A ACGCGTC GT T . AT A
blockSeqs : . A . G T T GTTGTAGT AGCT AATTT . A G TC GATAT TC A A . . . . A . A . CGT . . . . . TAT C . . . A G . A CG TC . . . .
blockSeqs : . A . T T A TTGCCAA GGCT ACTTT . T A CT GT TT T A . . . . T . . . TGT . . . . . TAA T . . . A A . A CG TC . . . .
blockSeqs : . T . G A A GTTGT GGCT AAGTT . T A AT GA T G A . . . . T . . . CGT . . . . . GAA T . . . A G . G TG AT . . . .
blockSeqs : . A . A A A A GCT AAGTT . T G TC C T A C . . . . A . . . TGT . . . . . TAA T . . . A G . G CG GT . . . .
blockSeqs : . . . A G A . T T . T A AT . . . . A . . . GTC . . . . . GTA T . . . A A . A TT AT . . . .
blockSeqs : . . . . . . . T . . . TGC . . . . . T T . . . G G . G CA GT . . . .
blockSeqs : . . A . . . C . . . . . . . . . . G A . . TG AC . . . .
blockSeqs : . . . . . . . . . . . . . . T . . . .
blockSeqCons : **** A* ** GGCT**** AATTT***** NC GAT*** CGC* *** **** A******* G**** ** CG***** GT **
originalCons : NNNNNNNATATTGAGGTCAGCTGATTGATTGTT----TGTTTTA-CGTC--CCGTCGAGAATNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAA-NTT----AGACCTAT-GCTTAGCGCNCAGAT-C-GGCTT----TCANCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--A----A---GACCCG----TGA--TTCTCGCTTCTAAATGC---CG--AGCGTTTGG-CGAAGGAGC-AA--TC--ACTACTTATTTTAACG
finalCons : NNNNNNNATATTGAGGTCAGCTGATTGATTGTT----TGTTTTA-CGTC--CCGTCGAGAATNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAATTT-----AGACCTAT-GCTTAGCGCNCAGAT---GGCTT----TCANCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--AA-------GACCCG----TGA--TTCTCGCTTCTAAATGCCG-----AGCGTTTGG-CGAAGGAGC-AA--TC--ACTACTTATTTTAACG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTACTTATTTTAACGTCTTAGGTTTAACGCAGCCGGTTCGAGCGCGGGACTCGAACTCACGACCTCCCGATTATGAGACAAAAGCACTACCACTGAGCCACCTT
Unaligned ( gi|14 ): AGCTACTACCTATTTTCACGTGCTTACGTTTGTCTTAGTCATGATGTGAGAGGTGCTCAAACTCAAAAACTCACGGTTGCGAAGTGAAAGTTCTATAACCACTG
Unaligned ( gi|17 ): GATGTGGCCCATGGGCCTCTTGTTTTCATTGGTGTAGCACCTATTATATGGAGATGAAGATCTTATAGTTTTGAAGTTTATATATTTGA
Unaligned ( gi|19 ): GTTAGTTTGTTTACTTCCCATCGAAAAGTTTTCACCCATAATAAGACGCCACTAACTTCA
Unaligned ( gi|20 ): GGTAAAGTACCACAAATATAGACCAGTGCTTTGCACTCGGGGGCCGCAGTATTGA
Alignments
lowQualScore : 222222 1111 11 333333333 11111111 1111 222222222222222222 1 1111 11111111 11111 1111111
lowQualScore : 888888 2222 11 77 1 0 1 2 0 666666666 0 44444444 8888 0000 1 777777777777777777 1 3 5 5 66 66 55 4 2 4 0000 0 4 4 777 55 4 777 1 4 8888 0 66 11111111 00000 99 4 0 0 4444444 55 4 4 55 99 0
lowQualScore : ...... .... .. .. . . . . . ......... . ........ .... .... . .................. . . . . .. .. .. . . . .... . . . ... .. . ... . . .... . .. ........ ..... .. . . . ....... .. . . .. .. .
lowQualScore : 555555 1111 11 99 7 3 0 2 1 333333333 1 99999999 1111 6666 0 111111111111111111 0 2 0 0 11 11 44 4 0 0 9999 7 0 0 000 55 0 222 2 0 5555 5 11 66666666 33333 55 4 4 1 5555555 22 0 0 55 55 4
consensus : NNNNNNNATATTGAGGTCAGCTGATTGATTGTT----TGTTTTA-CGTC--CCGTCGAGAATNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAAT-TT----AGACCTATGCTTAGCGCNCAG--AT--GGCNT----TCANCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--A----A---GACCCG----TGA--TTCTCGCTTCTAAATGC---CG--AGCGTTTGG-CGAAGGAGC-AA--TC--ACTACTTATTTTAACG
Reference ( family-703 ) : NNNNNNNATATTGAGGTCAGCTGATTGATTGTT----TGTTTTA-CGTC--CCGTCGAGAATNTTTCACTCATATTGAGACGTCACCA-TTGT-AGATGAAGGGCT----GCAAAT-TT----AGACCTATGCTTAGCGCNCAG--AT--GGCTT----TCANCAGTGAG-GGT-TC--T--TTN-GCGTGCC-A-CACCT-GCCGC-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CCGA--A----A---GACCCG----TGA--TTCTCGCTTCTAAATGC---CG--AGCGTTTGG-CGAAGGAGC-AA--TC--ACTACTTATTTTAACG
gi|1 : ATATTGA------TTGATTGATTATTATTTTGTTTTTTCGTCTACCGTGTAGACAATTTCACTCATTTTGAGA-GACACCC-ATGCGAGATGAAGGG-T----GCAAATATTGAAGAGGCCTG----TAGCA-GCAT--CT--GGTGT----TGAGC-GTGAGTGGTATC--T--TTA-GCGGCCC-ACCACCTAGCTGCGGATGCCGG-GAGTCC--CTATC-TTTGTAAGGGTA-CATGATACTGG--A----AAATGAGCC-----TGAG-TTCCAACTTCCAATTGCT--TG--ATCG-TCAG-C--AGGAGCAAA--TCGAATTAC--ATTTCA
gi|10 : cacagtaaA--TTCTTACTCCTAAATAT---CG--AACGTTTAGTCGAATGACC-AC--TC--TCCACTTATTTTAcgtcttagttgtagcgggggccgtgtgcgaatacaggggctgaacgcacgactcccgatccgaagcgagggctttaccactactggcaccgctg
gi|11 : ATTATTTGAT----TGTTTTA-CGTC--CCTTCAAGGGTTTTTCACTCGTATTGTGATGTCACCATTTGT-AGGTGAAGTACCACAAACAAAT-TT----AGACCTATGCTTAGCGCTCAG--taatgacttagatttgaagcggctaaataatcagagctcaatcccactacctacaatgtatacacgaagaagaggaagctctaactactgggtca
gi|12 : TTGTT----TGTTTTA-CGTC--CCGTCGAGAATTTTTCACTCTCGTAGAGACGTCACCA-ggccgtagca
gi|15 : tTATTGAGACGTCACAAGTTGT----TGA------------------T----A---CTATGCATAGCGCTCAG---T--GCCAT------ATCAGTGAG-GTT-TC--T--TTA-GAGTGCcaaaatagacccgttaattaaggaccgtaacagtgaattaaggttctttaaggt
gi|16 : TGCT----TGTTTTA-TGTC--CCTTCAGGAAATCCTTACTC--ATTGAGACGTGATCA-ggtctatctttatctgaggtcggaaaccc
gi|18 : tgtttcaCGTGCC-AACACCT-GT----GACA-CGGAGA---C--TTCCG-TTTTTAAAACCA-TGT----CCAA--A----A---GACCCGGCCATGA--TTCTatttgatgtgttaaacgctcaggtcggtattggtgaagg
gi|2 : GATTGATTATT----TGTTGTT-CGTC--CCGTTGCAAATATTTCACTCATATTGAGACG--------------ATGAAGAGCT----GCAAAT-TT----AGACCTATGCTTAGCACCTG----C--GGCTT----TCAACAGTGAG-GAT-TC--T--TTT-GCGTCCC-A-CACAT-GCTGC-GACA-CGG-GA---C--CACTG-TC---------A-TAT----CCGA--A----A---GACCAG----TGA--TTCTCACTTCTAGATGC---CG--AGCTCTTGT-CGAAGGAGC-AA--TC--ATTACCTATGTTAACGt
gi|21 : -CGCCT-GCCGT-GACA-CAG-GA---C--CTCCA--TTTTATGGCTA-TAT----CCGtcttaggttttgacgaggtcggtccgagctcgaagaacgaccttccgatcacgaggcaaaagctctaccactgcgccaccg
gi|22 : taccacaaaagTCATATTGAGAAGTCACCAGTTGT-AGTTGAAG---T----ACCACT-TT----AGACCCA
gi|3 : tATATTGAGGTCAGCTGATTGATTGTT----TGTTTT--CATC--ACAGTGAGAATATTTTATTCATATTGAGACATCACCA-TTGC-CAATGAAGGGCT----GCAAAG-TT----AGACCTATGCTTAGCACATAG--ATATGGCTT----TTATCAGTGAG-AGT-TT--T--TTT-GCATGCC-A-CACCT-GCTGT-GACA-CGG-GA---C--CTCCG-TTTTTAAGGTTA-TAT----CTGA--A----A---GACCCA----TGA--TTCTCACTTCCATTTGC---TG--GGCTCTTAG-TGAAGGAGC-AA--TC--ACTACTTATTTTAACG
gi|4 : gtgttgc--T--TTA-GCATGCC-AACACCT-ACCGT-G-CA-TGT-GA---C--CTCCGATTTTGAAGGTCA-TAT----CTGA--A----A---GACCTG----TGA--TCTTTGCTTCTAAATGC---CG--AGCATTTGT-CAAAGGAGC-AG--TT--ACTGCTTATTTTCACG
gi|5 : atgtggcccatgggcctcttgtTTGCT----TGCTTTA-CGTC--CCATCGAGATTGTTTCACTCATATTGAGACGTCACCA---------------GCT----GCA---------------CGTGCTGAGCGTTCAG--A----GCCG----T-AGCAGTGAG-GGT-TC--T--TTA-GCGTGCCGA-CGCCA-ATC-------------A---A--CT--G-TTTT----------AT----CTGG--A----A---GACCCG----TGA--TTCTCGCATCTAAATAC---TT--AGTGTTTGG-CGAAGGAGC-AA--TC--ATTATCTATtcttgggtttgatgcagccaaggcacgagtggggttgaactcacaacctctcgggaagctctaaccactgagcta
gi|6 : gAGGGCT----GCAAAG-TT----AGACCTATGCTTAGCACATAGATAT--GGCTTTTTATCAACCGTGAG-AGT-TT--TTGTTT-GCATGCC-A-CA-CT-GCTGT-GACA-CGG-TG---C--CTCCG-TTTTTAAGGTTAGTAT----CTGATCA----G---AACCAA----TGA---TCTC-CTTCCATTTGC-------GGC-TTTAG-TGAAGGA-C--A--TCA-ACTACTTATTTTAACgtgatagtcgtactggtttgac
gi|7 : aattgGTGAG-GGT-TCCGT--TAA-AAGT-CG-A-CACCT-GGGTC-GATA-TGC-GA---C--CTATA-TTTTT--GATTG-TAT----CAGA--A----G---GACCCG----TAA--TTCTCACTTCTAAATGC---CA--AACATTTGG-AGAAGGAGC-AT--CC--ACTACTGATGTTAATGagtaatgaggtttgga
gi|8 : -GAT-TC--T--TTTTAAATGTA-A-CACCT-ACTGC---CA-CAA-GA---CAGCTCAG-TTTTGTAGGTTG-TGT----CCAA--ATTAAA---GACCCA----CGACTTTCACGTTTC---ATGC---TG--ACCGTCTGG-CCATAAAAC-AG--TT--ACTATCCACTTTAACtgtcaagtttctagcacccgaggcacaaaggggt
gi|9 : attgtttttgggagctgatctTTCTAAATGTACGCGTCAGCACTTTG-CGAAGTTGC-AAATCC--ACTACTTA-TTTAACG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTACTTATTTTAACGTCTTAGGTTTAACGCAGCCGGTTCGAGCGCGGGACTCGAACTCACGACCTCCCGATTATGAGACAAAAGCACTACCACTGAGCCACCTT
Unaligned ( gi|14 ): AGCTACTACCTATTTTCACGTGCTTACGTTTGTCTTAGTCATGATGTGAGAGGTGCTCAAACTCAAAAACTCACGGTTGCGAAGTGAAAGTTCTATAACCACTG
Unaligned ( gi|17 ): GATGTGGCCCATGGGCCTCTTGTTTTCATTGGTGTAGCACCTATTATATGGAGATGAAGATCTTATAGTTTTGAAGTTTATATATTTGA
Unaligned ( gi|19 ): GTTAGTTTGTTTACTTCCCATCGAAAAGTTTTCACCCATAATAAGACGCCACTAACTTCA
Unaligned ( gi|20 ): GGTAAAGTACCACAAATATAGACCAGTGCTTTGCACTCGGGGGCCGCAGTATTGA