lowQualScore : 2 2 11 11 2 4444444444444444 33 1 1 1 3333333 1 1 4444444 2 1 11 33333333 11 555555 2 333 1 111 22222 222 1 1 1 2222 1 222 1 1 1 22 1 1 333333 11 1 2 4444 1 1 1111 11 11 22222222 33 11 1 222222 11 111 222222 111 33 2222 111111 1 1 2222 111 111111 222222 1 111 2222222 1111 11 33333 11 1 111 11 1 22222 1 1111 11 11111 1 111111 3333333 3 222222 11 1111 1 111 11111 111111 11111 4444444444444444444 222 111
lowQualScore : 0 3 1 0 6 0 3 1 88 7 44 0 6 1 7 0 1 77 0 0000000000000000 4 1 00 6 3 3 3 0 3 6 6 5 0 1 1 1111111 3 8 6 6 8 0 6666666 2 4 55 0 2 2 5 2 2 4 3 2 77 3 55555555 88 777777 2 2 4 2 0 55 2 555 4 6 2 0 111 88888 7 777 3 6 3 3 7 6 6 0000 3 7 7 666 3 3 7 8 5 00 3 8 3 444444 88 8 3 1 6 6 6 0000 1 3 5 5 66 666 5 77777 5 9999 66 5 5 66 888 0 2 7 5555 666 00 5 66 88 3 66 5 55555555 66 5 66 5 77 5 5 2 4 000000 5 0 11 333 5 5 5 2 0 888 5 777777 5 666 3 66 00 5 0000 444444 8 5 5 5 6 6 6 1 3 99 6 6 3 3 6 6 99 5555 888 6 6 2 999999 6 999999 99 0 444 7777777 2222 11 6 88888 9 00 0 666 22 0 55555 0 7777 11 9999 77777 1 3 1 999999 1 0000000 0 5 5 999 0 888888 99 3 7777 0 0 6 777 66666 0 2 3 6 6 333333 6 6 33333 6 6 6666666666666666666 3 6 333 999
lowQualScore : . . . . . . . . .. . .. . . . . . . .. . ................ . . .. . . . . . . . . . . . . ....... . . . . . . ....... . . .. . . . . . . . . . .. . ........ .. ...... . . . . . .. . ... . . . . ... ..... . ... . . . . . . . .... . . . ... . . . . . .. . . . ...... .. . . . . . . .... . . . . .. ... . ..... . .... .. . . .. ... . . . .... ... .. . .. .. . .. . ........ .. . .. . .. . . . . ...... . . .. ... . . . . . ... . ...... . ... . .. .. . .... ...... . . . . . . . . . .. . . . . . . .. .... ... . . . ...... . ...... .. . ... ....... .... .. . ..... . .. . ... .. . ..... . .... .. .... ..... . . . ...... . ....... . . . ... . ...... .. . .... . . . ... ..... . . . . . ...... . . ..... . . ................... . . ... ...
lowQualScore : 7 3 0 7 7 7 7 0 33 3 00 7 7 0 0 7 0 77 7 0000000000000000 7 0 77 7 7 7 3 7 3 7 7 0 7 0 0 3333333 3 3 7 0 3 7 0000000 5 0 55 0 5 5 5 5 5 0 0 5 55 0 55555555 00 555555 5 5 0 5 0 55 5 000 0 7 5 0 000 55555 3 000 3 7 3 7 3 7 0 0000 3 3 3 333 3 3 3 3 0 77 3 3 3 000000 33 3 3 0 5 7 7 8888 7 2 0 9 99 444 0 00000 0 2222 99 0 0 99 888 9 2 8 1111 000 66 0 99 55 2 99 0 11111111 99 0 99 0 55 0 0 9 5 222222 0 9 99 888 0 0 0 2 2 888 0 888888 0 666 6 99 55 0 6666 444444 8 0 7 7 7 7 7 0 5 22 7 7 3 7 7 7 22 5555 333 7 7 5 222222 7 777777 22 6 000 8888888 6666 00 0 00000 2 22 0 222 55 0 00000 6 4444 00 3333 88888 3 5 5 222222 7 5555555 4 7 7 444 0 888888 88 2 8888 2 0 5 555 55555 8 2 0 7 7 222222 7 7 88888 7 7 0000000000000000000 0 7 333 777
consensus : ATTCAAATATT-AAGTTTACAATAGAAAGCAG-CGATAC--AATAT-ACCTTTTCTTGATGTCCTTGTCACGAAAGCGGATAC-AG-CTAAAC----A-ACGGATATCTATTACAAA--CCAACGGACACNCACCA-TATCTAC-ATTTCGGGTTC-TGTCACCCGCACCA-TATT-CAAA-ACTGCCAT-CCTTATAATCCGCAAGCTTAANGNCTGTGCNNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAAATCATATCTAGTCAGCCCAAAAGCAGAAATACCCANAANAACTNATCGACGACGGGACTNNGAAAGCNAAGGGATAGCGTTGATTAGAA-GCAGCTGCT-T-CTAAT-A--ACGCAACGTGCAAACGATGATGAAATA-C-TATA-CTACCCTTTGT-GCACACNTATAATCCCAAGGAA-TCGGAAACA-TTCAAT-TCTATAATCCATCAATTAAACAACA-A-CT-AA-AGAAGATGAACAAACTAAAACTATATTTGAAAA-TAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAAATCTGAAGA-GGATACT----TTGTTC--TTCCCATTT-GAGGAGAACCACGACT-ATT---CAGTAATCA-AA-GTGC--ACGGATCCNCGATG-CGGGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTAT-AATTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--AT-G-CN-A-C-AT--G-TCA-TGCG-ACACTAAGGGTCGTTATTT-AT-GTCATCACATGTTCCA-GGATGC-AACGAATA--TTATA---T-CGGCGAA-A-CTGGCA---AC-ACTCT--C-CGTGCCC-GTGTACGGTGTACATAA--GCAA-GC-AC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTNAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATAGTC-TCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAG---GACATTTAAAAC------GTTCCGC-----TTTACCG-TGACG-TC-A-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAACNTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA--AC-GC-TTT-ACGG-AGAATTTT----T---GTTNTC-TT---TTT--ATACTTTTT
Reference ( gi|2 ) : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACCAGCTTAAAC----A-ACAGATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCATTATT-TAAA-ACAGCCATACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAAATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAATGA-ATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTAA--A--ACGCAACGTGCAAATGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-A-CT-AA-AGAAGATGAACAAACTAAAACTATATATGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATT-GAGGAAAACCA-GACT-AT----CAGTAATCA-AAAGTGC--ACGGATCCCCGATG-TGGAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATTAATTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--AT-G-CC-A-C-AT--G-TC--TGTG-ACACTAAGGGTCGTTATTT-AT-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-TGGCGAA-A-CTGGCA---AC-ACT-T--C-CGTGCCC-GTGTACGGTGTACATAA--GCAAGGC-AC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGTTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAG---GACATTTAAAAC------GTTCCGC-----TTTACCG-TGACG-TC-A-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA--AA-GC-TTT-ACGG-AGAATTTT----T---GTTTTC-TT---TTT--GTACTTTTT
gi|1 : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACCAGCTTAAAC----A-ACAGATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCATTATT-TAAA-ACAGCCATACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAAATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAATGA-ATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTAA--A--ACGCAACGTGCAAATGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-A-CT-AA-AGAAGATGAACAAACTAAAACTATATATGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATT-GAGGAAAACCA-GACT-AT----CAGTAATCA-AAAGTGC--ACGGATCCCCGATG-TGGAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATTAATTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--AT-G-CC-A-C-AT--G-TC--TGTG-ACACTAAGGGTCGTTATTT-AT-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-TGGCGAA-A-CTGGCA---AC-ACT-T--C-CGTGCCC-GTGTACGGTGTACATAA--GCAAGGC-AC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGTTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAG---GACATTTAAAAC------GTTCCGC-----TTTACCG-TGACG-TC-A-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA--AA-GC-TTT-ACGG-AGAATTTT----T---GTTTTC-TT---TTT--GTACTTTTT
gi|3 : TCCAAATATT-AAGTTTACAATAGAAAGCAT-CGATAC--TATATTACCTTTTCTTGATGTCCTTGTCATGAAAGCGGATAC-A----AAACTGTTA-ACGGATATCTATTACAAA--CCAACTGACACTCACCAATATCTACGATTTCGG-TTC-TGTCACCCGCACCA--ATTACAAAGACTGC-AT-CCTTATAATCTG---GCTTAACGTTTATGCGCTATAGTTAGTAATG-AAAACACCAGAGATATCCGTCTCAAG--AACTCAAA--------AG--AACTCAAAAACAGAAATACCCACAAAAACTTATAGACGACGGGACTCTAAAAGCGAAGGGATAGGACCGATCA-----CAGTTGTTAT-CTAC--ATGAAGCA--GAGAAAACAAGAAGGAAATA----ATA-CCA---TTTAT-ACATACGCACAA-CCCACGGAA-CCAGAA----TTTAATATCAACAATTCACCAACTTAACAACA-TTCT-AATACAGGATGAAACAACTAAGAAAATATTTCAAGA-TATGAAATTCATTAACAGCAAGCGCCA-AACCAAAAATCTCAAAC-GTATA------TTGTGCAATTCTCATTTTAAAGACAAC-A-G-CT-GTTACACAGTCATGA-AA--TGT--AAAGATCCAAGATG-CGGGACTAATG-CCA----ACCTATC-AC-CGAA--GGC---TCGACATAC-AACTT--T-GAT-G-GA-----A-CAGTTTTCAAAGTCA--AC-G-AA-AAT-AT--G-TCA-TGCA-ATACTA-GGAACGTAGTGT-AT-GTGATAACCTG--CCATGGATGT-AACGAGTA--TTACA---T-CGGCGAA-A-CCAGTA---AC-CCTCT--T-CGTTCCC-GTGTGCG-TGTTCACAA--GCAA--C-AC----ATT------TACTCA-CCA-GAATA-CCGTCA-AATTCCTCT-A-AGTGAACATTTAGATATTTGT--GGAAATA-AAC-AA-TTTAG-TA-T--ATTTCC---CTTCTACAAAC---T--------TTCGGGAAGAACCAA-TATTCAAA-AGCG--TGAAA--AAGAAAAACATTCTAT---TCATTCG---TTT-A--AACCTAAA--C--AAT----------TGATT-------TGA-CGTT----ACCTT---T-GTATTACGCTGTTTTACTTTGA--CATCACAGTTGA-TTT---GACATT----ACCATTGTATTCCGCCAATATGTATTA-TGACG-TC-A-
gi|8 : TTCAAATGTT-AAGTTTACAACAGAAAGCAG-CGATACTAAAT-T-ACTTTTTCTTGGTGTCATTGTCATAAAAGTGGATACGAAACTACTC----ACGCTGATATCTATTACAAA--CCAACAGACACACACCA-AATCCAC-ATTTC-GGTTCCTGTCACCAGCACCA-TA-C-CAAG-ACTACCATTCCTTATAATC
gi|1 : GCGTT--TTAGAA-GTAGCTGCT-T-CTAATCA--ACACgggctaaatgtttatgtgctatagttagtgatgaaaacaccagagacatctgtatcaaagtactcaagaactacctattaaaacagaaaaaaagtagacgacggaattctaaaagcgaattggcatgattgggatacgaccaatcattactatctacaagaagcaaggaaagcaagaaggagaccataccatttata
gi|4 : attcagatattcaaattcaccatggaaagcagacaatacaatatgccctttctgatgttcttgtaacgaaaaccaacaccagcttaaacaacagatatctattataaaaacccacggacacccaccatacctacatttcgggttcgtgccatccacaccattatttaaaacagccataccatataacccgcaagaaggactgtaccattcgtgagcaatatacaatacgagagatttacgcctggagggaattaaaatcatatctagtcagcccaaaagtatccagaacaactaatcaacaatgaattaggaaagccaaggaTAGAACGCAGCTACT-TTCTAAT-A--ACGCAACGTGCAAATGATGATGAAATAACCTATATCTACCCTTGGTTGTACACTTATAATCC-AAGAACTTCGAAAACA--TCAAT-TCTATAATCC-TCAATTAA-CAACCTA-CTGAA-AGAAGATGAACAAAC-AAAACTATATTTGAAACGTA--AATTTTATCAACAGTAAACGTCATCCCTAAAAATCTGAAGACGGACACTCACTTTGTTC--TTCCAATTT-GAG---AATCACGACTTATT---CAGTA-TCA-AATGTGTCAACGAATCCCCGATG-TGTA-C--ATG-CAAT---AC--ATTTAC-AGAAAAGGG---TCAAGTTATAAATTT--C-AAC-G-GAC-GTGA-C--TTTT-AAAGTTA--ATGG-CCAA-C-AT--G-TCA-TGTG-ACACTAAGGGT-GTTATTTAAT-GTCAT-ACATG-TCCA-GGATGCTAATGAATA--TTATAT--T-TGGCGAA-A-CTGGCA---AC-ACT-C--T-CGTGCTC-GTGTAC-GTGTACATAA--GCA--GCTAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-ACGGTGCTCACCTTGAAACCTGT--GGGAAT--AAC-AGTTTAAC-TA-T--TTTTCCAGGTTTTTATAAACT--TGATAAT-GTGCGGG------TGCTTATCCAGATGACG-TTGAAA--AAGAAAAACATTTCATATCTCA-TAC---TTT-A--AACCTTAA--CTTAATAGTC-TCTTGTGATTTTCCGTGTAA-TTTTTCCCACATTG-ATGGTATTA-----TC-TA---TGAATCGTCACTAT--ACTAG---AACA-TAAAAAT------GTTCCGC------TTAGCG-TGACGATC---TAATGCACTGT------CACTTATGTaacgtgcaaatgatgatgaaatacatatactaccctttgtgcacacctataatcccaaggaaatcggaaacaattcaattctataatccatcaattaaacaacaactaaagaagatgaacaaactaaaactatatatgaaaactataattttatcaacagtaaacgtcaacctaaaattctgaagaggatactttgttcttcccaattgaggaaaaccagactatcagtaatcaaaagtgcacggatccccgatgtggaacatgcaattacattacagaagggtcaagttattaatttcaacggacgtgacttttaaaagttaatgccacatgtctgtgacactaagggtcgttatttatgtaatcacatgttccaggatgcaatgaatattatattggcgaaactggcaacacttccgtgcccgtgtacggtgtacataagcaaggcacattaacacacccgaataccggcagctccagctaagtgttcaccttgaaacctgtgggaataaacagttaactatttttccgtttttataaactgaaatgtgcgggtgctatccagagacgtttgaaaaagaaaaacatttcattcattactttaaaacctaaacttaatatcatcttgtgattttcccgtaattttccacattgatgtattatcttattgacgtcacaatataggacatttaaaacgttccgctttaccgtgacgtcataatcactgtcactatgttactgtttatcgtaaacatttatttgtaaagcttctgaagatagatgaaagcgctaaagctttacggagaatttttgttttctttttgtacttttt
gi|7 : gaGAAGAACCACGACT-ATA---CAGAAAT---AAAGTGC--ACGGATCCACCATG-TGGG-T--ATG--AATT--TC--ATT-AC-AGAA--GGG---ACAAGT-AT-AATTT--CTAAC-A-AACCGTGAAC--TTC--AAAGTTAGTAT-G-CA-A-T-AT--GATCA-TGCG-ACATTAAAGGATATTATTT-TTTGT--CTACATGT-CCA-GGATGC-AATGAATAG-TTATAAATTGTGGAGAAGA-CTAGCA----C-ATT-TATCGCGTGCCG-TTGTA-AGTGTACATGACAGCA--GC-AC----ATT------AA-ACGGCCC-GAATA-ACGGCA-GCTCCAGCT-A-AGTGCTCACCT--GAACCTGT--GGG-ATACAAC-AGTTTAAC-TA-TTGTTTTCC--G--TTTATAAAC---TGA-AAT-GT-CCGG------TGC-TATCCAGA-----TGTGAAA--AAG-AAAATATTTCAT---TCATAGCCTTCTTAACTAACTTAAA--CATAac
gi|10 : GAGAACCACGACT-ATA---CAG-AATCA-AA-GTGC--ACGGATCCCCCATG-TGGTAC--ATG-CAATT--GC--ATT-AC-AGAA--GGG---ACAAGTTAT-AATTT--C-AAC-A-AAC-GTGA-C--TTC--AAAGTTA--AT-G-CC-AAT-AT--G-TCA-TGCG-ACATTAAGGAT-ATTATTT-TT-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-TGGAGAA-A-CTAGCA---AC-ATTAT--C-CGTGCCC-GTGTACG-TGTACATAA--GCA--GC-AC----ATT------AACACG-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTTAC-TA-T--TTTTCC--G-TTTTATAAAC---TGA-AAT-GTGCCGG------TGC-TATCCAGA----GTTTAAAA--
gi|5 : tGAGAACCACGA-T-ATT---CAGTA-TCA-AA-GTGC--ACGGATCCC--ATGGTTGCAC--AT---AATTTTAC--ATT-AC-AGAA--GGA---T-AAGTTTTTAATTTT-C-AACTGCGAC-GTGA-C--TTTTAAA-GTTA--AT-GGCC-A---ATTAG-TTCATGTGGACACTAAGGATGTTTATTT-AT-GTCATCACATGTT--A-AGATGC-AATTAATA--TGATA---T-TTGCGAA-ATTTGGCATACAT-ACTCT--C-CGTGCCCTGTGTAT-GTTT-CATAA--G--AGTC-ACT---ATT------AA-ACA-CCCTGAATATCCGATAGGCTCCAGCTGA-AGTG-CCAACTTCGTACCTGTGGGGGAA-A-AACAAG-TTCACTTATT--TTTTCC--G-TTTTAT-AACTTTTGA-AATGGTGCGGG------TGC-TATCCAG--GAC--TTGAAATTAAG-AAAACTTTTCAT---TCA-AACT--TTTAA--AACCTAAAATCTTAATAGTC-TCTTGCGATTGTCC-CGTAATTTTT--CCACATTGTAT-GTATTA-----TC--A--TGAA--CGTCAAAAT--A-TA----GACA-TTAACAC------GTTCCGC------TTACCGTTGACG-TC-ATTAATCCACTAT------CAC--AT----T---TCTT-TAT-GT---AAATCAATTATTTGGTAAGCTTCTT-GAAGAT-A--GAA-TGAAAGCCGCTA--AC-GCTTTT-ACGG-ATATTTTTTTTGT---GTTTTC-TA---TTT--ATTTTTTTT
gi|13 : GTTACCA-AATGTGC---CG-ATCGGCGATG-CGGAAC--ATGTCCATT--TC----T-ACGAGAA--GGGAATTC--GTT-TCAGTTTAAC-AAC-A-AA-----A-T--ATTTACA-GTGA--AT-T-CGGA-C-AT--G-TCA-TGTT-CCACCAAAAAT-GTAATTT-AC-GTCATAACGTGTGCT--GGATGT-GA--AATACATTACA---T-CGGTGAA-A-CTGG-A---ACTACT-T--TACAAACTC-GTATAAGA-ATACATAA--ACA--GC-ATA---ATT------CA-ACA-CCT-GAATA-tga
gi|14 : ccATCATGAAATGT--AAAGATCCAAAATG-CGGGAT---TG-CCAAC--AT--ATC-AC-TGAA--GGG---TCGGCATGCAAATTT--------G-GAA-CTGT-C--TTT--GAAGTTA--AC-G-AA-A-AGAT--G-TCA-TGTG-ATACGAAGAG-CGTTCTGT-AT-GTGATCATCTGT--CATGGATGT-AACGAGTA--TTACA---C-CGGCGAA-A-CC-ATA---AC-CCTCT--T-TGTACCC-GTGTGC-GTGTTCACAA--GCAA--C-ACTTTTATTCAGTGCAACACA-C
gi|1 : TTA--T-GA--CGTCACGGT--A-AAGCGGAACGTTTTAAAT------GTCC--------TATATTG-TGACG-TCAA-TAA
gi|6 : attcagatattcaaattcaccatggaaagcagacaatacaatatgccctttctgatgttcttgtaacgaaaaccaacaccagcttaaacaacagatatctattataaaaacccacggacacccaccatacctacatttcgggttcgtgccatccacaccattatttaaaacagccataccatataacccgcaagaaggactgtaccattcgtgagcaatatacaatacgagagatttacgcctggagggaattaaaatcatatctagtcagcccaaaagtatccagaacaactaatcaacaatgaattaggaaagccaaggagtgttgattagaagcagctacttctaaaacgcaacgtgcaaatgatgatgaaatacatatactaccctttgtgcacacctataatcccaaggaaatcggaaacaattcaattctataatccatcaattaaacaacaactaaagaagatgaacaaactaaaactatatatgaaaactataattttatcaacagtaaacgtcaacctaaaattctgaagaggatactttgttcttcccaattgaggaaaaccagactatcagtaatcaaaagtgcacggatccccgatgtggaacatgcaattacattacagaagggtcaagttattaatttcaacggacgtgacttttaaaagttaatgccacatgtctgtgacactaagggtcgttatttatgtaatcacatgttccaggatgcaatgaatattatattggcgaaactggcaacacttccgtgcccgtgtacggtgtacataagcaaggcacattaacacacccgaataccggcagctccagctaagtgttcaccttgaaacctgtgggaataaacagttaactatttttccgtttttataaactgaaatgtgcgggtgctatccagagacgtttgaaaaagaaaaacatttcattcattactttaaaacctaaacttaatatcatcttgtgattttcccgtaattttccacattgatgtattatcACAGT--G-TAG--------TTAAGAC------GT--CG-------TTATTG-TGACG-TC-A-TAAtcactgtcactatgttactgtttatcgtaaacatttatttgtaaagcttctgaagatagatgaaagcgctaaagctttacggagaatttttgttttctttttgtacttttt
gi|17 : aaatgtgtcgtgtacatccagaaatttaatacactgcatgatttgtatctcctgcagagaaaattacataggacagaccggaactaagttagctgaccgtgtgaaagtccacaaacaacaaatacggaaccactccgtcaggaatacaccctgcagtgaacattttcatttatgtgctaatggaaactttctactttttccgttttacaaagttttagaaaacaatgaacatttacaaagaacgaaagaaaactatcttgtaaaattatttaaacccaagttgaatgctatttaatcatttactctcagttgtcatgttttaacccattactttatttatggcgccttattgactttaacttgcgccaatttattatgctgcctTACTA-TGACG-TC-A-T--TGCATTGTTTAGTCCATACACGTTACAATTGTTATTTTGT---AAA------ATTTGTAAAACGTC-TTGAAGAT-ATTA-A-TGAAAG-CGCTA--AC-GT-TTT-AC------ATCCG----T---GTTGCC-TTTTATTT--TTACTTTcataacaaagactttgtatgtttgaaaacattacactctgaagagccgacatggcaaaagcgctaagtgtgataaatgtagataatttattcagtcatcgttggatttt
gi|16 : -TATATTAG---TATA-TATCAAGAAAAA-CATAT-TTTGTAAAACGTC-T-GAAGAT-T--G-A-TGAAAG-CGCTA--AC-GT-TTT-AC-------TTTG----T---GTTGTC-TT---TTT---TACTTT
gi|21 : TACTTGTTA---TTC-T-GAAGAA-A--G-AATGAAAG-CGCTACGAACGC-TTTTACGGCAGAATTTT----TCGTGTTTTC-TTCTTTTT--ATACTTGTTaattttctttatgtaaataaccgtacactgagaaattta
gi|22 : AAAACGTC-T-GAGGATCA--A-A-CGAAAG-CGCTT--AC-GT-TTT-AC-T-AG----------T---GTTGTCATT---TTTAAATACTTTTTttga
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TCCGTTCTACAGGAAGTTTAGAAAACAATGAACATTACGGAGACGCAAAGAGGACTATTTTGTAAAAACTGAATAGTTTAAACGAAAGTTGAATGTAGTTAATCATTTACTTCGTCAATTGTCATATTTTATACCTGTTGCTTTATTTATTGCCCCTTCTATGACTTTAAACATTATGCGCCAATTTATTGTAGACTTGCCTTATATGACGTCACGAATAACGACGTCTTAACTACACTGTCATAAACAAAGGACTGTGTATTTGTAATCATTACCACTCTGAGAAGAGCCGACAAAGGGAAAGCGCTAGAGGTGTCATAAATGTAGATAAATAATTCAGTCATCGTTGGATTTTATTTTTGT
Unaligned ( gi|11 ): TGTGTGATTTGTATCTCCTGCAGAGAAAATGACACAGAACAGACAGGAACTATAATTATAAGCTAATCGACTGCGAGGTCCACAAACAACAAATACGGGATCCATCTGTCGGAATACACCCTGCAGTGAGCATTTTGATTTATGTGCCAGGGAAAACATTTTTATTTTCCCATTTTATAAAGTTTTAGAAACAATGAAGTTTTTATGACATTTATGGGGAGTGAAAGAGTATTATTCTGTGAAATTATTCAAACCCAAGTTGAATGTATTTTAATTTTGTCATATTCAAACCCATTAATTTATCTTTGGCACCTTATTGA
Unaligned ( gi|12 ): TAGTGTATCAGGATTCTAAACCCAATTAGCTTCATCGTAGCTTTTATAGCGCTCCTCTACATTGGACTTTAACTTGCGCCAATTTTATACTCGCTAGGCCATTATCTACGACGCTCAATCAATAAACAGGACTTTTTCTTAATACATACAACTGGTCATATGACAAATCGACTGTATTTAAACAAAAAAATCAATTACAATCTGATTAGACGCCAGCCGACTAAGTGGTTGATAGAAGCCCTCTATAGTGGGATAGATTTAAAATAA
Unaligned ( gi|15 ): TGCGCCAATGCTGCTTTTGTGAGGTCACAATATAACTACGTCATAAAAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCAATCATTGGATTTTTTC
Unaligned ( gi|18 ): AATATAACTACGTCATAACAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCATCATTGGATTTTTT
Unaligned ( gi|19 ): TATAATATCAAAACAAAGACTGTTAAACTCTGAAGAGCCGACATATAGCGAAAACGCAAAGTATGATAAATGCGTATTCAGTCACCGTTGGATTTCTCTCTCTCTC
Unaligned ( gi|20 ): ACAACATTCTCAGACAAGATGAATCTTCTACGAAAATATTTCAAGATGACATCAAACGCCAACCTAAAAATTTCAAACGTACATTGTGCAAGTC
Alignments
lowQualScore : 2 2 11 1 1 4444444 2222 11 22 1 1 2 22 1 1 222 3333333 1 1 11111 11 333333333 1 333 1 111 111 3333 1 1 33 2 1 2 1 1 222 11 1 1 2222 11 2222 11 11111 1111 111111111 11 1 11 1111111 11 2222 1111 111111 1 1111 111 111111 111111 111 111 11111 22222 11 22222 1 111 11 111111 111111 2222222 1 222222 11 111 111 111 2222222222222222222 222 111
lowQualScore : 0 3 0 33 3 0 5 2 2 4444444 1111 3 33 77 3 0 1 0 0 8 0 33 3 0 0 4 2 111 4 0 8888888 1 1 22 5 1 1 5 1 1 1 1 2 888 1 66666 0 22 0 0 444444444 1 44 4 2 9 2 22 1 777 9 2 0 2 111 666 3 2 6666 0 2 0 1 3 2 33 3 0 3 0 3 3 0 0 0 3 4 444 33 0 4 0 2 1111 33 4 3 0 4 5 2222 0 1 66 66 66 222 4 66 6 66 4 666 66 4 4 66 777 3 55555 4 2222 4 4 88 4 66 99 7 66 999999999 66 4 4 1 0 4 33 4 4 1 2 8 8 4 6 00 0000000 4 55 777 4 11 4 4 888 2 66 0000 8888 222222 6 4 5 5 5 5 5 1 1 77 5 5 1 1 5 77 5 2222 5 000 5 5 0 666666 5 888888 77 111 77 111 44444 99 3 22222 5 8 8 11 8 8 00000 0 111 11 8888 222222 1 2 666666 5 8888888 0 5 5 5 5 333333 55 1 444 8 3 444 8 22 0 1 5 5 888888 5 5 000 5 5 4444444444444444444 1 5 000 333
lowQualScore : . . . .. . . . . . ....... .... . .. .. . . . . . . . .. . . . . . ... . . ....... . . .. . . . . . . . . . ... . ..... . .. . . ......... . .. . . . . .. . ... . . . . ... ... . . .... . . . . . . .. . . . . . . . . . . . ... .. . . . . .... .. . . . . . .... . . .. .. .. ... . .. . .. . ... .. . . .. ... . ..... . .... . . .. . .. .. . .. ......... .. . . . . . .. . . . . . . . . .. ....... . .. ... . .. . . ... . .. .... .... ...... . . . . . . . . . .. . . . . . .. . .... . ... . . . ...... . ...... .. ... .. ... ..... .. . ..... . . . .. . . ..... . ... .. .... ...... . . ...... . ....... . . . . . ...... .. . ... . . ... . .. . . . . ...... . . ... . . ................... . . ... ...
lowQualScore : 0 0 0 88 2 0 5 5 5 5555555 2222 2 88 55 0 2 0 0 0 8 0 22 2 0 0 0 5 000 0 2 5555555 0 0 00 5 0 0 5 0 0 0 0 5 222 0 22222 8 00 2 2 000000000 0 22 5 5 0 0 00 0 333 0 5 0 0 000 555 2 0 2222 0 5 0 0 2 5 88 2 0 2 0 2 2 0 0 0 2 0 888 22 0 0 0 5 2222 88 0 0 4 3 7 4444 4 9 11 22 11 222 4 11 4 11 4 999 11 4 4 11 888 6 44444 4 3333 4 4 33 4 11 00 3 11 666666666 11 4 4 9 7 4 44 4 4 1 9 1 9 4 2 66 0000000 4 33 888 4 99 4 4 777 2 11 8888 3333 888888 7 4 0 0 7 7 7 7 7 99 7 7 4 0 7 99 7 1111 7 000 7 7 7 444444 7 666666 99 777 00 777 22222 22 5 66666 6 0 0 00 0 0 00000 6 888 00 9999 000000 7 1 444444 0 4444444 2 0 0 0 0 000000 00 0 000 0 2 000 0 00 9 0 7 7 666666 7 7 000 7 7 9999999999999999999 0 7 000 999
consensus : ATTCAGATATTCAAGTTCACNATGGAAAGCAGACGATAC--AATAT-GCCCTTTCTTGATGTCCTTGTNACGAAAGCCGACACC-AGCTTAAAC----AACG--GATATCTATTACAAAAACCNACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCACCCGCACCATTATT-CAAA-ACNGCCA-TACCNTATAACCCGCAAGCT-AANGNCTGTGCGNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAAATATCCAGAANAACTAATCGACGACGGGATTNNGAAAGCNAAGG---AGTGTCGATTAGAA-GCAGCTACT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA--CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAA-TCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACATACT-AA-AGAAGATGAACAAACTAAAACTATATNTGAAA-ACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAANTCTGAAGA-GGATACT----TTGTTC--TTCCCANTTGAGGAGAACCACGACT-ATT---CAGTAATCA--AA-GTGC--ACGGATCCCCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTA-T---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CN-A-C-AT--G-T-CATGCG-ACACTAAGGGTCGTTATTTA-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-C-GGCGAA-ACT-GGCA---AC-ACTC-TC-CGTGCCC-GTGTACGGTGTACATAA--GCAA-G-CAC----ATT------AACACA-CCC-GAATA-CCGGCAG-CTCCAGCT-A-AGTGCTCACCTTGAAACCTGTGGG--AATA-AACA-G-TTAACT-AT--TTTT-CC--GTTTTTATAAAC-T---GA-AATG-TGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTT-AA--AACCTAAA--CTTAATAGTCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGG-AGAATTTT----T---GTTTTC-TT---TTT--ATACTTTTT
Reference ( family-665 ) : ATTCAAATATT-AAGTTTACAATAGAAAGCAG-CGATAC--AATAT-ACCTTTTCTTGATGTCCTTGTCACGAAAGCGGATAC--AGCT-AAAC----AACG--GATATCTATTACAAA--CCAACGGACACNCACCA-TATCTAC-ATTTCGGGTTC-TGTCACCCGCACCAT-ATT-CAAA-ACTGCCA-T-CCTTATAATCCGCAAGCTTAANGNCTGTGCNNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAAATACCCANAANAACTNATCGACGACGGGACTNNGAAAGCNAAGGGATAGCGTTGATTAGAA-GCAGCTGCT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA--C-TATA-CTACCCTTTGT-GCACACNTATAATCCCAAGGAA--TCGGAAACA-TTCAAT-TCTATAATCCATCAATTAAACAACA-ACT-AA-AGAAGATGAACAAACTAAAACTATATTTGAAA-A-TAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAAATCTGAAGA-GGATACT----TTGTTC--TTCCCATTTGAGGAGAACCACGACT-ATT---CAGTAATCA--AA-GTGC--ACGGATCCNCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTA-T---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CN-A-C-AT--G-T-CATGCG-ACACTAAGGGTCGTTATTTA-T-GTCATCACATGTTCCA-GGATGC-AACGAATA--TTATA---T-C-GGCGAA-ACT-GGCA---AC-ACTC-TC-CGTGCCC-GTGTACGGTGTACATAA--GCAA-G-CAC----ATT------AACACA-CCC-GAATA-CCGGCAG-CTCCAGCT-A-AGTGCTCACCTTGAAACCTGTGGG--AATA-AACA-G-TTNACT-AT--TTTT-CC--GTTTTTATAAAC-T---GA-AATG-TGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTT-AA--AACCTAAA--CTTAATAGTC-TCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAACNTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGG-AGAATTTT----T---GTTNTC-TT---TTT--ATACTTTTT
gi|1 : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACC-AGCTTAAAC----AACA--GATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCATTATT-TAAA-ACAGCCA-TACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAA-ATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAATGA-ATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTA-A-AACGCAACGTGCAAATGATGATGAAATA--CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAA-TCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-ACT-AA-AGAAGATGAACAAACTAAAACTATATATGAAA-ACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATTGAGGAAAACCA-GACT-AT----CAGTAATCA--AAAGTGC--ACGGATCCCCGATGTG--GAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CC-A-C-AT--G-T-C-TGTG-ACACTAAGGGTCGTTATTTA-T-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-T-GGCGAA-ACT-GGCA---AC-ACT--TC-CGTGCCC-GTGTACGGTGTACATAA--GCAAGG-CAC----ATT------AACACA-CCC-GAATA-CCGGCAG-CTCCAGCT-A-AGTGTTCACCTTGAAACCTGTGGG--AATA-AACA-G-TTAACT-AT--TTTT-CC--GTTTTTATAAAC-T---GA-AATG-TGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTT-AA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---AAGC-TTT-ACGG-AGAATTTT----T---GTTTTC-TT---TTT--GTACTTTTT
gi|10 : GAGAACCACGACT-ATA---CAG-AATCA--AA-GTGC--ACGGATCCCCCATGTG--GTAC--ATG-CAATT--GC--ATT-AC-AGAA--GGG---ACAAGTTA-T---AA-TTT--C-AAC-A-AAC-GTGA-C--TTC--AAAGTTA--ATG--CC-AAT-AT--G-T-CATGCG-ACATTAAGGAT-ATTATTTT-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-T-GGAGAA-ACT-AGCA---AC-ATTA-TC-CGTGCCC-GTGTACG-TGTACATAA--GCA--G-CAC----ATT------AACACG-CCC-GAATA-CCGGCAG-CTCCAGCT-A-AGTGCTCACCTTGAAACCTGTGGG--AATA-AACA-G-TTTACT-AT--TTTT-CC--G-TTTTATAAAC-T---GA-AATG-TGCCGG------TGC-TATCCAGA----GTTTAAAA--
gi|13 : tGTTACCA--AA--TGT--GCCGATCGGCGATGCG--GAAC--ATGTCCATT--TC----T-ACGAGAA--GGGAATTC--GTTT-C---AG-TTTAAC-AAC-A-AA-----A-T--ATTTACA-GTGA--ATT--CGGA-C-AT--G-T-CATGTT-CCACCAAAAAT-GTAATTTA-C-GTCATAACGTGTGCT--GGATGT-GA--AATACATTACA---T-C-GGTGAA-ACT-GG-A---ACTACTT-TA-CAAACTC-GTATAAGA-ATACATAA--AC-A-G-CATA---ATT------CA-ACA-CCT-GAATA-
gi|14 : ccATCATGAA-ATGT--AAAGATCCAAAATGCG--GGAT---TG-CCAAC--AT--ATC-AC-TGAA--GGG---TC--GGCA-TGCAAA-TTT--------G-GAA-CTGT-C--TTT--GAAGTTA--ACG--AA-A-AGAT--G-T-CATGTG-ATACGAAGAG-CGTTCTGTA-T-GTGATCATCTGT--CATGGATGT-AACGAGTA--TTACA---C-C-GGCGAA-ACC--ATA---AC-CCTC-TT-TGTACCC-GTGTGC-GTGTTCACAA--GCAA---CACTTTTATTCAGTGCAACACA-C
gi|16 : -TATATTAG---TATA-TATCAAGAAAAA-CATAT-TTTGTAAAACGTC-T-GAAGAT-T--G-A-TGAAAG-CGCTA---ACGT-TTT-AC-------TTTG----T---GTTGTC-TT---TTT---TACTTT
gi|17 : TACTA-TGACG-TCA-T--TGCATTGTTTAGTCCATACACGTTACAATTGTTATTTTGT---AAA------ATTTGTAAAACGTC-TTGAAGAT-ATTA-A-TGAAAG-CGCTA---ACGT-TTT-AC------ATCCG----T---GTTGCC-TTTTATTT--TTACTTTaattttctttatgtaaataaccgtacactgagaaattta
gi|2 : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACC-AGCTTAAAC----AACA--GATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCATTATT-TAAA-ACAGCCA-TACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAA-ATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAATGA-ATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTA-A-AACGCAACGTGCAAATGATGATGAAATA--CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAA-TCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-ACT-AA-AGAAGATGAACAAACTAAAACTATATATGAAA-ACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATTGAGGAAAACCA-GACT-AT----CAGTAATCA--AAAGTGC--ACGGATCCCCGATGTG--GAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CC-A-C-AT--G-T-C-TGTG-ACACTAAGGGTCGTTATTTA-T-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-T-GGCGAA-ACT-GGCA---AC-ACT--TC-CGTGCCC-GTGTACGGTGTACATAA--GCAAGG-CAC----ATT------AACACA-CCC-GAATA-CCGGCAG-CTCCAGCT-A-AGTGTTCACCTTGAAACCTGTGGG--AATA-AACA-G-TTAACT-AT--TTTT-CC--GTTTTTATAAAC-T---GA-AATG-TGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTT-AA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---AAGC-TTT-ACGG-AGAATTTT----T---GTTTTC-TT---TTT--GTACTTTTT
gi|21 : TACTTGTTA---TTC-T-GAAGAA-A--G-AATGAAAG-CGCTACGAACGC-TTTTACGGCAGAATTTT----TCGTGTTTTC-TTCTTTTT--ATACTTGTT
gi|22 : AAAACGTC-T-GAGGATCA--A-A-CGAAAG-CGCTT---ACGT-TTT-AC-T-AG----------T---GTTGTCATT---TTTAAATACTTTTTttga
gi|3 : ataTCCAAATATT-AAGTTTACAATAGAAAGCAT-CGATAC--TATATTACCTTTTCTTGATGTCCTTGTCATGAAAGCGGATAC--A----AAACTGTTAACG--GATATCTATTACAAA--CCAACTGACACTCACCAATATCTACGATTTCGG-TTC-TGTCACCCGCACCA--ATTACAAAGACTGC-A-T-CCTTATAATCTG---GCTTAACGTTTATGCGCTATAGTTAGTAATG-AAAACACCAGAGATATCCGTCTCAAG--AACTCAA-A--------AG--AACTCAAAAACAGAAATACCCACAAAAACTTATAGACGACGGGACTCTAAAAGCGAAGGGATAGGACCGATCA-----CAGTTGTTAT-CTACATGAAGCA--GAGAAAACAAGAAGGAAATA-----ATA-CCA---TTTAT-ACATACGCACAA-CCCACGGAA--CCAGA---A-TTTAATATCAACAATTCACCAACTTAACAACATTCT-AATACAGGATGAAACAACTAAGAAAATATTTCAAG-A-TATGAAATTCATTAACAGCAAGCGCCA-AACCAAAAATCTCAAAC-GTATA------TTGTGCAATTCTCATTTTA--AAGACAACAGCT-GTTACACAGTCATGA--AA--TGT--AAAGATCCAAGATGCG--GGACTAATG-CCA----ACCTATC-AC-CGAA--GGC---TCGACATA-C---AA-CTT--T-GAT-G-GA-----A-CAGTTTTCAAAGTCA--ACGA-AA-A-T-AT--G-T-CATGCA-ATACT-AGGAACGTAGTGTA-T-GTGATAACCTG--CCATGGATGT-AACGAGTA--TTACA---T-C-GGCGAA-ACC-AGTA---AC-CCTC-TT-CGTTCCC-GTGTGC-GTGTTCACAA--GCAA---CAC----ATT------TACTCA-CCA-GAATA-CCGTCAA-ATTCCTCT-A-AGTGAACATTTAGATATTTGTGGA--AATA-AACA-A-TTTAGT-AT--ATTT-CC---CTTCTACAAAC-T-----------TTCGGGAAGAACCAA-TATTCAAA-AGCG--TGAAA--AAGAAAAACATTCTAT---TCATTCG---TTT--A--AACCTAAA--C--AAT----------TGATT-------TGA-CGTT----ACCTT---T-GTATTACGCTGTTTTACTTTGA--CATCACAGTTGA-TTTGACATT----ACCATTGTATTCCGCCAATAT-GTATTA-TGACG-TCA-tt
gi|4 : TAGAACGCAGCTACT-TTCTA-ATAACGCAACGTGCAAATGATGATGAAATAACC-TATATCTACCCTTGGTTGTACACTTATAATCC--AAGAACTTCGAAAACA-T-CAAT-TCTATAATCC-TCAATTAA-CAACCTACTGAA-AGAAGATGAACAAAC-AAAACTATATTTGAAACG-TA--AATTTTATCAACAGTAAACGTCATCCCTAAAAATCTGAAGACGGACACTCACTTTGTTC--TTCCAATTTGAG---AATCACGACTTATT---CAGTA-TCA--AATGTGTCAACGAATCCCCGATGTG--T-AC--ATG-CAAT---AC--ATTTAC-AGAAAAGGG---TCAAGTTA-T---AAATTT--C-AAC-G-GAC-GTGA-C--TTTTAAA-GTTA--ATGGCCA-A-C-AT--G-T-CATGTG-ACACTAAGGGT-GTTATTTAAT-GTCAT-ACATGT-CCA-GGATGCTAATGAATA--TTATA---T-TTGGCGAA-ACT-GGCA---AC-ACTC-TC--GTGCTC-GTGTACG-TGTACATAA--GCAG-C-TAC----ATT------AACACA-CCC-GAATA-CCGGCAG-CTCCAGCT-ACGGTGCTCACCTTGAAACCTGTGGG--AAT--AACA-GTTTAACT-AT--TTTT-CCAGGTTTTTATAAACTT---GATAATG-TGCGGG------TGCTTATCCAGATGACG-TTGAAA--AAGAAAAACATTTCATATCTCA-TAC---TTT--A--AACCTTAA--CTTAATAGTC-TCTTGTGATTTTCCGTGTAA-TTTTTCCCACATTG-ATGGTATTA-----TC-TA---TGAATCGTCACTAT--ACTAGAACA-TAAAAAT------GTTCCGC-------TTAGCG-TGACGATC--TAATGCACTGT------CACTTATGT
gi|5 : gaGAGAACCACGA-T-ATT---CAGTA-TCA--AA-GTGC--ACGGATCCC--ATG-GTTGCAC--AT---AATTTTAC--ATT-AC-AGAA--GGA---T-AAGTTT-TT--AA-TTTT-C-AACTGCGAC-GTGA-C--TTTTAAA-GTTA--ATGG-CC-A---ATTAG-TTCATGTGGACACTAAGGATGTTTATTTA-T-GTCATCACATGTT--A-AGATGC-AATTAATA--TGATA---T-T-TGCGAA-ATTTGGCATACAT-ACTC-TC-CGTGCCCTGTGTATGTT-T-CATAA--G--A-GTCACT---ATT------AA-ACA-CCCTGAATATCCGATAGGCTCCAGCTGA-AGTGC-CAACTTCGTACCTGTGGGGGAA-A-AACAAG-TTCACTTAT--TTTTTCC--GTTTT-ATAA-C-TTTTGA-AATGGTGCGGG------TGC-TATCCAG--GAC--TTGAAATTAAGAAAA-CTTTTCAT---TCAA-AC---TTTTAA--AACCTAAAATCTTAATAGTC-TCTTGCGATTGTCC-CGTAATTTTT--CCACATTGTAT-GTATTA-----TC--A--TGAA--CGTCAAAAT--A-TA-GACA-TTAACAC------GTTCCGC-------TTACCGTTGACG-TCATTAATCCACTAT------CAC--AT----T---TCTT-TAT-GT---AAATCAATTATTTGGTAAGCTTCTT-GAAGAT-A--GAA-TGAAAGCCGCTA---ACGCTTTT-ACGG-ATATTTTTTTTGT---GTTTTC-TA---TTT--ATTTTTTTTac
gi|6 : ACAGT--G-TAG-----TTAAGAC------GT--CG--------TTATTG-TGACG-TCA-TAAtga
gi|7 : aaatgtgtcgtgtacatccagaaatttaatacactgcatgatttgtatctcctgcagagaaaattacataggacagaccggaactaagttagctgaccgtgtgaaagtccacaaacaacaaatacggaaccactccgtcaggaatacaccctgcagtgaacattttcatttatgtgctaatggaaactttctactttttccgttttacaaagttttagaaaacaatgaacatttacaaagaacgaaagaaaactatcttgtaaaattatttaaacccaagttgaatgctatttaatcatttactctcagttgtcatgttttaacccattactttatttatggcgccttattgactttaacttgcgccaatttattatgctgcctGAAGAACCACGACT-ATA---CAGAAAT-A--AA-GTGC--ACGGATCCACCATGTG--GG-T--ATG--AATT--TC--ATT-AC-AGAA--GGG---ACAAGT-A-T---AA-TTT--CTAAC-A-AACCGTGAAC--TTC--AAAGTTAGTATG--CA-A-T-AT--GAT-CATGCG-ACATTAAAGGATATTATTTT-TTGTC--TACATGT-CCA-GGATGC-AATGAATAG-TTATAAATTGT-GGAGAAGACT-AGCA----C-ATTTATCGCGTGCCG-TTGTA-AGTGTACATGACAGCA--G-CAC----ATT------AA-ACGGCCC-GAATA-ACGGCAG-CTCCAGCT-A-AGTGCTCACCT--GAACCTGTGGG---ATACAACA-GTTTAACT-ATTGTTTT-CC--G--TTTATAAAC-T---GA-AATG-T-CCGG------TGC-TATCCAGA-----TGTGAAA--AAG-AAAATATTTCAT---TCATAGCCTTCTT-AACTAACTTAAA--CATAcataacaaagactttgtatgtttgaaaacattacactctgaagagccgacatggcaaaagcgctaagtgtgataaatgtagataatttattcagtcatcgttggatttt
gi|8 : TTCAAATGTT-AAGTTTACAACAGAAAGCAG-CGATACTAAAT-T-ACTTTTTCTTGGTGTCATTGTCATAAAAGTGGATACGAAACT-ACTC----A-CGCTGATATCTATTACAAA--CCAACAGACACACACCA-AATCCAC-ATTTCGGTTCC-TGTCACCAGCACCAT-A-C-CAAG-ACTACCATT-CCTTATAATCGG---GCTAAATGTTTATGTGCTATAGTTAGTGATG-AAAACACCAGAGACATCTGTATCAAAGT-ACTCAAGAAC-TACCTATT-------AAAACAGAAA-----AAAAG------TAGACGACGGAATTCTAAAAGCGAA
gi|9 : ACAGT--G-TAG-----TTAAGAC------GT--CGT-----TATT--CG-TGACG-TCA-TAttggcatgattgggatacgaccaatcattactatctacaagaagcaaggaaagcaagaaggagaccataccatttata
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTGTGATTTGTATCTCCTGCAGAGAAAATGACACAGAACAGACAGGAACTATAATTATAAGCTAATCGACTGCGAGGTCCACAAACAACAAATACGGGATCCATCTGTCGGAATACACCCTGCAGTGAGCATTTTGATTTATGTGCCAGGGAAAACATTTTTATTTTCCCATTTTATAAAGTTTTAGAAACAATGAAGTTTTTATGACATTTATGGGGAGTGAAAGAGTATTATTCTGTGAAATTATTCAAACCCAAGTTGAATGTATTTTAATTTTGTCATATTCAAACCCATTAATTTATCTTTGGCACCTTATTGA
Unaligned ( gi|12 ): TAGTGTATCAGGATTCTAAACCCAATTAGCTTCATCGTAGCTTTTATAGCGCTCCTCTACATTGGACTTTAACTTGCGCCAATTTTATACTCGCTAGGCCATTATCTACGACGCTCAATCAATAAACAGGACTTTTTCTTAATACATACAACTGGTCATATGACAAATCGACTGTATTTAAACAAAAAAATCAATTACAATCTGATTAGACGCCAGCCGACTAAGTGGTTGATAGAAGCCCTCTATAGTGGGATAGATTTAAAATAA
Unaligned ( gi|15 ): TGCGCCAATGCTGCTTTTGTGAGGTCACAATATAACTACGTCATAAAAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCAATCATTGGATTTTTTC
Unaligned ( gi|18 ): AATATAACTACGTCATAACAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCATCATTGGATTTTTT
Unaligned ( gi|19 ): TATAATATCAAAACAAAGACTGTTAAACTCTGAAGAGCCGACATATAGCGAAAACGCAAAGTATGATAAATGCGTATTCAGTCACCGTTGGATTTCTCTCTCTCTC
Unaligned ( gi|20 ): ACAACATTCTCAGACAAGATGAATCTTCTACGAAAATATTTCAAGATGACATCAAACGCCAACCTAAAAATTTCAAACGTACATTGTGCAAGTC
Alignments
lowQualScore : 1 1 11 1 1 2222 11 11 1 1 11 11 1 4444444 1 1 11111 11 444444 1 222 1 111 111 111 1 1 1 1 1 1 11 1 1 2222 11 2222 11 222 1111 111111111 11 11 1111111 11 111 2222 1111 111111 1 1111 111 111111 111111 111 111 22222 11 22222 1 111 11 111111 111111 2222222 1 222222 11 111 111 111 2222222222222222222 1111111 111
lowQualScore : 5 1 5 33 3 0 5 1 2 8 999 1111 3 33 88 1 0 0 0 0 2 2 8 33 66 0 1 2 9 1 0 9999999 1 1 33 5 1 1 5 1 1 1 1 2 888 1 66666 0 22 0 0 111111 0 2 1 3 2 9 22 1 333 0 2 0 111 666 3 2 555 0 2 0 0 3 2 9 3 9 0 3 3 5 0 0 3 1 8 33 0 1 0 2 1111 33 1 3 0 4 5 2222 0 1 66 66 66 222 4 66 6 66 4 666 66 4 4 66 777 3 111 4 2222 4 4 88 4 66 99 7 66 999999999 66 4 4 1 0 4 33 4 4 1 2 8 4 4 00 0000000 4 4 777 4 11 4 4 111 2 66 0000 8888 222222 6 4 5 5 5 5 5 1 1 77 5 5 1 1 5 5 77 9999 555 5 5 0 666666 5 888888 77 7 111 7 888 7 99 99 3 22222 5 8 8 11 8 8 00000 0 111 11 8888 222222 1 2 666666 5 8888888 0 5 5 5 5 333333 55 1 444 8 3 444 8 22 0 1 5 5 888888 5 5 000 5 5 4444444444444444444 1 5 4444444 333
lowQualScore : . . . .. . . . . . . ... .... . .. .. . . . . . . . . .. .. . . . . . . ....... . . .. . . . . . . . . . ... . ..... . .. . . ...... . . . . . . .. . ... . . . ... ... . . ... . . . . . . . . . . . . . . . . . . .. . . . . .... .. . . . . . .... . . .. .. .. ... . .. . .. . ... .. . . .. ... . ... . .... . . .. . .. .. . .. ......... .. . . . . . .. . . . . . . . .. ....... . . ... . .. . . ... . .. .... .... ...... . . . . . . . . . .. . . . . . . .. .... ... . . . ...... . ...... .. . ... . ... . .. .. . ..... . . . .. . . ..... . ... .. .... ...... . . ...... . ....... . . . . . ...... .. . ... . . ... . .. . . . . ...... . . ... . . ................... . . ....... ...
lowQualScore : 0 0 5 88 2 0 5 0 5 8 888 2222 2 88 55 0 2 2 0 0 5 5 8 22 22 0 0 5 8 0 2 0000000 0 0 55 5 0 0 5 0 0 0 0 5 222 0 22222 8 00 2 2 888888 8 5 0 2 5 0 00 0 333 7 5 0 000 555 2 0 555 0 5 0 2 2 5 8 2 2 0 2 2 5 0 0 2 0 8 22 0 0 0 5 2222 88 0 0 4 3 7 4444 4 9 11 22 11 333 4 11 4 11 4 999 11 4 4 11 888 6 111 4 3333 4 4 33 4 11 00 3 11 666666666 11 4 4 9 7 4 44 4 4 1 9 9 4 4 66 0000000 4 4 888 4 99 4 4 444 2 11 8888 3333 888888 7 4 0 0 7 7 7 7 7 99 7 7 4 9 7 7 99 1111 777 7 7 7 444444 7 666666 99 3 777 3 333 3 22 22 5 00000 6 0 0 00 0 0 00000 6 888 00 9999 000000 7 1 444444 0 4444444 2 0 0 0 0 000000 00 0 000 0 2 000 0 00 4 3 7 7 666666 7 7 000 7 7 9999999999999999999 3 7 7777777 999
consensus : ATTCAGATATTCAAGTTCACNATGGAAAGCAGACGATAC--AATAT-GCCCTTTCTTGATGTCCTTGTNACGAAAGCCGACACCAGCTTAAAC----AACG--GATATCTATTACAAAAACCNACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCACCCGCACCA-TTATTCAAA-ACNGCCATACCNTATAACCCGCAAGCT-AANGNCTGTGCGNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAA-TATCCAGAANAACTAATCGACGACGGGATTNNGAAAGCNAAGG---AGTGTCGATTAGAA-GCAGCTACT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACATACT-AA-AGAAGATGAACAAACTAAAACTATATNTGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAANTCTGAAGA-GGATACT----TTGTTC--TTCCCANTTGAGGAGAACCACGACT-ATT---CAGTAATCA--AA-GTGC--ACGGATCCCCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTAT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CN-A-C-AT--G-T-CATGCG-ACACTAAGGGTCGTTATTTA-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-C-GGCGAA-A-CTGGCA---AC-ACTC-TC-CGTGCCC-GTGTACGGTGTACATAA--GCAA-G-CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATAGTCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGG-AGAATTTT----T---GTTTTC-T---T---TTT--ATACTTTTT
Reference ( family-665 ) : ATTCAGATATTCAAGTTCACNATGGAAAGCAGACGATAC--AATAT-GCCCTTTCTTGATGTCCTTGTNACGAAAGCCGACACCAGCTTAAAC----AACG--GATATCTATTACAAAAACCNACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCACCCGCACCA-TTATTCAAA-ACNGCCATACCNTATAACCCGCAAGCT-AANGNCTGTGCGNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAAATATCCAGAANAACTAATCGACGACGGGATTNNGAAAGCNAAGG---AGTGTCGATTAGAA-GCAGCTACT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACATACT-AA-AGAAGATGAACAAACTAAAACTATATNTGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAANTCTGAAGA-GGATACT----TTGTTC--TTCCCANTTGAGGAGAACCACGACT-ATT---CAGTAATCA--AA-GTGC--ACGGATCCCCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTAT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CN-A-C-AT--G-T-CATGCG-ACACTAAGGGTCGTTATTTA-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-C-GGCGAA-A-CTGGCA---AC-ACTC-TC-CGTGCCC-GTGTACGGTGTACATAA--GCAA-G-CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATAGTCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGG-AGAATTTT----T---GTTTTC-T---T---TTT--ATACTTTTT
gi|1 : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACCAGCTTAAAC----AACA--GATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCA-TTATTTAAA-ACAGCCATACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAA-ATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAATGA-ATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTA-A-AACGCAACGTGCAAATGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-ACT-AA-AGAAGATGAACAAACTAAAACTATATATGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATTGAGGAAAACCA-GACT-AT----CAGTAATCA--AAAGTGC--ACGGATCCCCGATGTG--GAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATT--AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CC-A-C-AT--G-T-C-TGTG-ACACTAAGGGTCGTTATTTA-T-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-T-GGCGAA-A-CTGGCA---AC-ACT--TC-CGTGCCC-GTGTACGGTGTACATAA--GCAAGG-CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGTTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---AAGC-TTT-ACGG-AGAATTTT----T---GTTTTC-T---T---TTT--GTACTTTTT
gi|10 : GAGAACCACGACT-ATA---CAG-AATCA--AA-GTGC--ACGGATCCCCCATGTG--GTAC--ATG-CAATT--GC--ATT-AC-AGAA--GGG---ACAAGTTAT---AA-TTT--C-AAC-A-AAC-GTGA-C--TTC--AAAGTTA--ATG--CC-AAT-AT--G-T-CATGCG-ACATTAAGGAT-ATTATTTT-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-T-GGAGAA-A-CTAGCA---AC-ATTA-TC-CGTGCCC-GTGTACG-TGTACATAA--GCA--G-CAC----ATT------AACACG-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTTAC-TA-T--TTTTCC--G-TTTTATAAAC---TGA-AAT-GTGCCGG------TGC-TATCCAGA----GTTTAAAA--
gi|13 : tGTTACCA--AA--TGT--GCCGATCGGCGATGCG--GAAC--ATGTCCATT--TC----T-ACGAGAA--GGGAATTC--GTTTC---AG-TTTAAC-AAC-A-AA-----A-T--ATTTACA-GTGA--ATT--CGGA-C-AT--G-T-CATGTT-CCACCAAAAAT-GTAATTTA-C-GTCATAACGTGT-GCT-GGATGT-GA--AATACATTACA---T-C-GGTGAA-A-CTGG-A---ACTACTT-TA-CAAACTC-GTATAAGA-ATACATAA--AC-A-G-CATA---ATT------CA-ACA-CCT-GAATA-
gi|14 : ccATCATGAA-ATGT--AAAGATCCAAAATGCG--GGAT---TG-CCAAC--AT--ATC-AC-TGAA--GGG---TC--GGCATGCAAA-TTT--------G-GAA-CTGT-C--TTT--GAAGTTA--ACG--AA-A-AGAT--G-T-CATGTG-ATACGAAGAG-CGTTCTGTA-T-GTGATCATCTGT-CAT-GGATGT-AACGAGTA--TTACA---C-C-GGCGAA-A-CCA-TA---AC-CCTC-TT-TGTACCC-GTGTGC-GTGTTCACAA--GCAA---CACTTTTATTCAGTGCAACACA-C
gi|16 : -TATATTAG---TATA-TATCAAGAAAAA-CATAT-TTTGTAAAACGTC-T-GAAGAT-T--G-A-TGAAAG-CGCTA---ACGT-TTT-AC-------TTTG----T---GTTGTC-T---T---TTT---TACTTT
gi|17 : TACTA-TGACG-TCA-T--TGCATTGTTTAGTCCATACACGTTACAATTGTTATTTTGT---AAA------ATTTGTAAAACGTC-TTGAAGAT-ATTA-A-TGAAAG-CGCTA---ACGT-TTT-AC------ATCCG----T---GTTGCC-T---TTTATTT--TTACTTTaattttctttatgtaaataaccgtacactgagaaattta
gi|2 : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACCAGCTTAAAC----AACA--GATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCA-TTATTTAAA-ACAGCCATACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAA-ATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAATGA-ATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTA-A-AACGCAACGTGCAAATGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-ACT-AA-AGAAGATGAACAAACTAAAACTATATATGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATTGAGGAAAACCA-GACT-AT----CAGTAATCA--AAAGTGC--ACGGATCCCCGATGTG--GAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATT--AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CC-A-C-AT--G-T-C-TGTG-ACACTAAGGGTCGTTATTTA-T-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-T-GGCGAA-A-CTGGCA---AC-ACT--TC-CGTGCCC-GTGTACGGTGTACATAA--GCAAGG-CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGTTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---AAGC-TTT-ACGG-AGAATTTT----T---GTTTTC-T---T---TTT--GTACTTTTT
gi|21 : TACTTGTTA---TTC-T-GAAGAA-A--G-AATGAAAG-CGCTACGAACGC-TTTTACGGCAGAATTTT----TCGTGTTTTC-TTCTT---TTT--ATACTTGTT
gi|22 : AAAACGTC-T-GAGGATCA--A-A-CGAAAG-CGCTT---ACGT-TTT-AC-T-AG----------T---GTTGTCAT---T---TTTAAATACTTTTTttga
gi|3 : ataTCCAAATATT-AAGTTTACAATAGAAAGCAT-CGATAC--TATATTACCTTTTCTTGATGTCCTTGTCATGAAAGCGGATAC-A----AAACTGTTAACG--GATATCTATTACAAA--CCAACTGACACTCACCAATATCTACGATTTCGG-TTC-TGTCACCCGCACCAATTA--CAAAGACTGC-AT-CCTTATAATCTG---GCTTAACGTTTATGCGCTATAGTTAGTAATG-AAAACACCAGAGATATCCGTCTCAAG--AACTCAA-A--------AG--AACTCAAAAACAGAAATACCCACAAAAACTTATAGACGACGGGACTCTAAAAGCGAAGGGATAGGACCGATCA-----CAGTTGTTAT-CTACATGAAGCA--GAGAAAACAAGAAGGAAATA----ATA-CCA---TTTAT-ACATACGCACAA-CCCACGGAA-CCAGAA----TTTAATATCAACAATTCACCAACTTAACAACATTCT-AATACAGGATGAAACAACTAAGAAAATATTTCAAGA-TATGAAATTCATTAACAGCAAGCGCCA-AACCAAAAATCTCAAAC-GTATA------TTGTGCAATTCTCATTTTA--AAGACAACAGCT-GTTACACAGTCATGA--AA--TGT--AAAGATCCAAGATGCG--GGACTAATG-CCA----ACCTATC-AC-CGAA--GGC---TCGACATAC---AA-CTT--T-GAT-G-GA-----A-CAGTTTTCAAAGTCA--ACG--AA-AAT-AT--G-T-CATGCA-ATACTA-GGAACGTAGTGTA-T-GTGATAACCTG--CCATGGATGT-AACGAGTA--TTACA---T-C-GGCGAA-A-CCAGTA---AC-CCTC-TT-CGTTCCC-GTGTGC-GTGTTCACAA--GCAA---CAC----ATT------TACTCA-CCA-GAATA-CCGTCA-AATTCCTCT-A-AGTGAACATTTAGATATTTGT--GGAAATA-AAC-AA-TTTAG-TA-T--ATTTCC---CTTCTACAAAC---T--------TTCGGGAAGAACCAA-TATTCAAA-AGCG--TGAAA--AAGAAAAACATTCTAT---TCATTCG---TTT-A--AACCTAAA--C--AAT----------TGATT-------TGA-CGTT----ACCTT---T-GTATTACGCTGTTTTACTTTGA--CATCACAGTTGA-TTTGACATT----ACCATTGTATTCCGCCAATAT-GTATTA-TGACG-TCA-tt
gi|4 : TAGAACGCAGCTACT-TTCTA-ATAACGCAACGTGCAAATGATGATGAAATAACCTATATCTACCCTTGGTTGTACACTTATAATCC-AAGAACTTCGAAAACA--TCAAT-TCTATAATCC-TCAATTAA-CAACCTACTGAA-AGAAGATGAACAAAC-AAAACTATATTTGAAACGTA--AATTTTATCAACAGTAAACGTCATCCCTAAAAATCTGAAGACGGACACTCACTTTGTTC--TTCCAATTTGAG---AATCACGACTTATT---CAGTA-TCA--AATGTGTCAACGAATCCCCGATGTG--T-AC--ATG-CAAT---AC--ATTTAC-AGAAAAGGG---TCAAGTTAT---AAATTT--C-AAC-G-GAC-GTGA-C--TTTTAAA-GTTA--ATGGCCA-A-C-AT--G-T-CATGTG-ACACTAAGGGT-GTTATTTAAT-GTCAT-ACATGT-CCA-GGATGCTAATGAATA--TTATA---T-TTGGCGAA-A-CTGGCA---AC-ACTC-TC--GTGCTC-GTGTACG-TGTACATAA--GCAG-C-TAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-ACGGTGCTCACCTTGAAACCTGT--GGGAAT--AAC-AGTTTAAC-TA-T--TTTTCCAGGTTTTTATAAACT--TGATAAT-GTGCGGG------TGCTTATCCAGATGACG-TTGAAA--AAGAAAAACATTTCATATCTCA-TAC---TTT-A--AACCTTAA--CTTAATAGTC-TCTTGTGATTTTCCGTGTAA-TTTTTCCCACATTG-ATGGTATTA-----TC-TA---TGAATCGTCACTAT--ACTAGAACA-TAAAAAT------GTTCCGC-------TTAGCG-TGACGATC--TAATGCACTGT------CACTTATGT
gi|5 : gaGAGAACCACGA-T-ATT---CAGTA-TCA--AA-GTGC--ACGGATCCC--ATG-GTTGCAC--AT---AATTTTAC--ATT-AC-AGAA--GGA---T-AAGTTTTT--AA-TTTT-C-AACTGCGAC-GTGA-C--TTTTAAA-GTTA--ATGG-CC-A---ATTAG-TTCATGTGGACACTAAGGATGTTTATTTA-T-GTCATCACATGT--TA-AGATGC-AATTAATA--TGATA---T-T-TGCGAA-ATTTGGCATACAT-ACTC-TC-CGTGCCCTGTGTAT-GTTT-CATAA--G--A-GTCACT---ATT------AA-ACA-CCCTGAATATCCGATAGGCTCCAGCTGA-AGTGC-CAACTTCGTACCTGTGGGGGAA-A-AACAAG-TTCACTTATT--TTTTCC--G-TTTTAT-AACTTTTGA-AATGGTGCGGG------TGC-TATCCAG--GAC--TTGAAATTAAG-AAAACTTTTCAT---TCA-AACT--TTTAA--AACCTAAAATCTTAATAGTC-TCTTGCGATTGTCC-CGTAATTTTT--CCACATTGTAT-GTATTA-----TC--A--TGAA--CGTCAAAAT--A-TA-GACA-TTAACAC------GTTCCGC-------TTACCGTTGACG-TCATTAATCCACTAT------CAC--AT----T---TCTT-TAT-GT---AAATCAATTATTTGGTAAGCTTCTT-GAAGAT-A--GAA-TGAAAGCCGCTA---ACGCTTTT-ACGG-ATATTTTTTTTGT---GTTTTC-T---A---TTT--ATTTTTTTTac
gi|6 : ACAGT--G-TAG-----TTAAGAC------GT--CG--------TTATTG-TGACG-TCA-TAAtga
gi|7 : aaatgtgtcgtgtacatccagaaatttaatacactgcatgatttgtatctcctgcagagaaaattacataggacagaccggaactaagttagctgaccgtgtgaaagtccacaaacaacaaatacggaaccactccgtcaggaatacaccctgcagtgaacattttcatttatgtgctaatggaaactttctactttttccgttttacaaagttttagaaaacaatgaacatttacaaagaacgaaagaaaactatcttgtaaaattatttaaacccaagttgaatgctatttaatcatttactctcagttgtcatgttttaacccattactttatttatggcgccttattgactttaacttgcgccaatttattatgctgcctGAAGAACCACGACT-ATA---CAGAAAT-A--AA-GTGC--ACGGATCCACCATGTG--GG-T--ATG--AATT--TC--ATT-AC-AGAA--GGG---ACAAGT-AT---AA-TTT--CTAAC-A-AACCGTGAAC--TTC--AAAGTTAGTATG--CA-A-T-AT--GAT-CATGCG-ACATTAAAGGATATTATTTT-TTGTC--TACATGT-CCA-GGATGC-AATGAATAG-TTATAAATTGT-GGAGAAGA-CTAGCA----C-ATTTATCGCGTGCCG-TTGTA-AGTGTACATGACAGCA--G-CAC----ATT------AA-ACGGCCC-GAATA-ACGGCA-GCTCCAGCT-A-AGTGCTCACCT--GAACCTGT--GGG-ATACAAC-AGTTTAAC-TA-TTGTTTTCC--G--TTTATAAAC---TGA-AAT-GT-CCGG------TGC-TATCCAGA-----TGTGAAA--AAG-AAAATATTTCAT---TCATAGCCTTCTTAACTAACTTAAA--CATAcataacaaagactttgtatgtttgaaaacattacactctgaagagccgacatggcaaaagcgctaagtgtgataaatgtagataatttattcagtcatcgttggatttt
gi|8 : TTCAAATGTT-AAGTTTACAACAGAAAGCAG-CGATACTAAAT-T-ACTTTTTCTTGGTGTCATTGTCATAAAAGTGGATACGAAACTACTC----A-CGCTGATATCTATTACAAA--CCAACAGACACACACCA-AATCCAC-ATTTC-GGTTCCTGTCACCAGCACCA--TA-CCAAG-ACTACCATTCCTTATAATCGG---GCTAAATGTTTATGTGCTATAGTTAGTGATG-AAAACACCAGAGACATCTGTATCAAAGT-ACTCAAGAAC-TACCTATT-------AAAACAGAA--------AAAAAGTA---GACGACGGAATTCTAAAAGCGAA
gi|9 : ACAGT--G-TAG-----TTAAGAC------GT--CGT-----TATT--CG-TGACG-TCA-TAttggcatgattgggatacgaccaatcattactatctacaagaagcaaggaaagcaagaaggagaccataccatttata
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTGTGATTTGTATCTCCTGCAGAGAAAATGACACAGAACAGACAGGAACTATAATTATAAGCTAATCGACTGCGAGGTCCACAAACAACAAATACGGGATCCATCTGTCGGAATACACCCTGCAGTGAGCATTTTGATTTATGTGCCAGGGAAAACATTTTTATTTTCCCATTTTATAAAGTTTTAGAAACAATGAAGTTTTTATGACATTTATGGGGAGTGAAAGAGTATTATTCTGTGAAATTATTCAAACCCAAGTTGAATGTATTTTAATTTTGTCATATTCAAACCCATTAATTTATCTTTGGCACCTTATTGA
Unaligned ( gi|12 ): TAGTGTATCAGGATTCTAAACCCAATTAGCTTCATCGTAGCTTTTATAGCGCTCCTCTACATTGGACTTTAACTTGCGCCAATTTTATACTCGCTAGGCCATTATCTACGACGCTCAATCAATAAACAGGACTTTTTCTTAATACATACAACTGGTCATATGACAAATCGACTGTATTTAAACAAAAAAATCAATTACAATCTGATTAGACGCCAGCCGACTAAGTGGTTGATAGAAGCCCTCTATAGTGGGATAGATTTAAAATAA
Unaligned ( gi|15 ): TGCGCCAATGCTGCTTTTGTGAGGTCACAATATAACTACGTCATAAAAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCAATCATTGGATTTTTTC
Unaligned ( gi|18 ): AATATAACTACGTCATAACAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCATCATTGGATTTTTT
Unaligned ( gi|19 ): TATAATATCAAAACAAAGACTGTTAAACTCTGAAGAGCCGACATATAGCGAAAACGCAAAGTATGATAAATGCGTATTCAGTCACCGTTGGATTTCTCTCTCTCTC
Unaligned ( gi|20 ): ACAACATTCTCAGACAAGATGAATCTTCTACGAAAATATTTCAAGATGACATCAAACGCCAACCTAAAAATTTCAAACGTACATTGTGCAAGTC
Alignments
lowQualScore : 1 1 11 1 1 2222 11 11 1 1 11 11 1 4444444 1 1 11111 11 3333333 1 222 1 111 111 111 1 1 1 1 1 1 11 1 1 2222 11 2222 11 222 1111 111111111 11 11 1111111 11 111 2222 1111 111111 1 1111 111 111111 111111 111 111 22222 11 22222 1 111 11 111111 111111 2222222 1 222222 11 111 111 111 2222222222222222222 1111111 111
lowQualScore : 5 1 5 33 3 0 5 1 2 8 999 1111 3 33 88 1 0 0 0 0 2 2 8 33 66 0 1 2 9 1 0 9999999 1 1 33 5 1 1 5 1 1 1 1 2 888 1 66666 0 22 0 0 9999999 0 2 1 3 2 9 22 1 333 0 2 0 111 666 3 2 555 0 2 0 0 3 2 9 3 9 0 3 3 5 0 0 3 1 8 33 0 1 0 2 1111 33 1 3 0 4 5 2222 0 1 66 66 66 222 4 66 6 66 4 666 66 4 4 66 777 3 111 4 2222 4 4 88 4 66 99 7 66 999999999 66 4 4 1 0 4 33 4 4 1 2 8 4 4 00 0000000 4 4 777 4 11 4 4 111 2 66 0000 8888 222222 6 4 5 5 5 5 5 1 1 77 5 5 1 1 5 5 77 9999 555 5 5 0 666666 5 888888 77 7 111 7 888 7 99 99 3 22222 5 8 8 11 8 8 00000 0 111 11 8888 222222 1 2 666666 5 8888888 0 5 5 5 5 333333 55 1 444 8 3 444 8 22 0 1 5 5 888888 5 5 000 5 5 4444444444444444444 1 5 4444444 333
lowQualScore : . . . .. . . . . . . ... .... . .. .. . . . . . . . . .. .. . . . . . . ....... . . .. . . . . . . . . . ... . ..... . .. . . ....... . . . . . . .. . ... . . . ... ... . . ... . . . . . . . . . . . . . . . . . . .. . . . . .... .. . . . . . .... . . .. .. .. ... . .. . .. . ... .. . . .. ... . ... . .... . . .. . .. .. . .. ......... .. . . . . . .. . . . . . . . .. ....... . . ... . .. . . ... . .. .... .... ...... . . . . . . . . . .. . . . . . . .. .... ... . . . ...... . ...... .. . ... . ... . .. .. . ..... . . . .. . . ..... . ... .. .... ...... . . ...... . ....... . . . . . ...... .. . ... . . ... . .. . . . . ...... . . ... . . ................... . . ....... ...
lowQualScore : 0 0 5 88 2 0 5 0 5 8 888 2222 2 88 55 0 2 2 0 0 5 5 8 22 22 0 0 5 8 0 2 0000000 0 0 55 5 0 0 5 0 0 0 0 5 222 0 22222 8 00 2 2 8888888 8 5 0 2 5 0 00 0 333 7 5 0 000 555 2 0 555 0 5 0 2 2 5 8 2 2 0 2 2 5 0 0 2 0 8 22 0 0 0 5 2222 88 0 0 4 3 7 4444 4 9 11 22 11 333 4 11 4 11 4 999 11 4 4 11 888 6 111 4 3333 4 4 33 4 11 00 3 11 666666666 11 4 4 9 7 4 44 4 4 1 9 9 4 4 66 0000000 4 4 888 4 99 4 4 444 2 11 8888 3333 888888 7 4 0 0 7 7 7 7 7 99 7 7 4 9 7 7 99 1111 777 7 7 7 444444 7 666666 99 3 777 3 333 3 22 22 5 00000 6 0 0 00 0 0 00000 6 888 00 9999 000000 7 1 444444 0 4444444 2 0 0 0 0 000000 00 0 000 0 2 000 0 00 4 3 7 7 666666 7 7 000 7 7 9999999999999999999 3 7 7777777 999
consensus : ATTCAGATATTCAAGTTCACNATGGAAAGCAGACGATAC--AATAT-GCCCTTTCTTGATGTCCTTGTNACGAAAGCCGACACCAGCTTAAAC----AACG--GATATCTATTACAAAAACCNACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCACCCGCACCA-TTATTCAAA-ACNGCCATACCNTATAACCCGCAAGCT-AANGNCTGTGCGNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAA-TATCCAGAANAACTAATCGACGACGGGATTNNGAAAGCNAAGG---AGTGTCGATTAGAA-GCAGCTACT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACATACT-AA-AGAAGATGAACAAACTAAAACTATATNTGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAANTCTGAAGA-GGATACT----TTGTTC--TTCCCANTTGAGGAGAACCACGACT-ATT---CAGTAATCA--AA-GTGC--ACGGATCCCCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTAT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CN-A-C-AT--G-T-CATGCG-ACACTAAGGGTCGTTATTTA-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-C-GGCGAA-A-CTGGCA---AC-ACTC-TC-CGTGCCC-GTGTACGGTGTACATAA--GCAA-G-CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATAGTCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGG-AGAATTTT----T---GTTTTC-T---T---TTT--ATACTTTTT
Reference ( family-665 ) : ATTCAGATATTCAAGTTCACNATGGAAAGCAGACGATAC--AATAT-GCCCTTTCTTGATGTCCTTGTNACGAAAGCCGACACCAGCTTAAAC----AACG--GATATCTATTACAAAAACCNACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCACCCGCACCA-TTATTCAAA-ACNGCCATACCNTATAACCCGCAAGCT-AANGNCTGTGCGNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAA-TATCCAGAANAACTAATCGACGACGGGATTNNGAAAGCNAAGG---AGTGTCGATTAGAA-GCAGCTACT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACATACT-AA-AGAAGATGAACAAACTAAAACTATATNTGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAANTCTGAAGA-GGATACT----TTGTTC--TTCCCANTTGAGGAGAACCACGACT-ATT---CAGTAATCA--AA-GTGC--ACGGATCCCCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTAT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CN-A-C-AT--G-T-CATGCG-ACACTAAGGGTCGTTATTTA-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-C-GGCGAA-A-CTGGCA---AC-ACTC-TC-CGTGCCC-GTGTACGGTGTACATAA--GCAA-G-CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATAGTCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGG-AGAATTTT----T---GTTTTC-T---T---TTT--ATACTTTTT
gi|1 : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACCAGCTTAAAC----AACA--GATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCA-TTATTTAAA-ACAGCCATACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAA-ATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAATGA-ATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTA-A-AACGCAACGTGCAAATGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-ACT-AA-AGAAGATGAACAAACTAAAACTATATATGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATTGAGGAAAACCA-GACT-AT----CAGTAATCA--AAAGTGC--ACGGATCCCCGATGTG--GAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATT--AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CC-A-C-AT--G-T-C-TGTG-ACACTAAGGGTCGTTATTTA-T-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-T-GGCGAA-A-CTGGCA---AC-ACT--TC-CGTGCCC-GTGTACGGTGTACATAA--GCAAGG-CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGTTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---AAGC-TTT-ACGG-AGAATTTT----T---GTTTTC-T---T---TTT--GTACTTTTT
gi|10 : GAGAACCACGACT-ATA---CAG-AATCA--AA-GTGC--ACGGATCCCCCATGTG--GTAC--ATG-CAATT--GC--ATT-AC-AGAA--GGG---ACAAGTTAT---AA-TTT--C-AAC-A-AAC-GTGA-C--TTC--AAAGTTA--ATG--CC-AAT-AT--G-T-CATGCG-ACATTAAGGAT-ATTATTTT-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-T-GGAGAA-A-CTAGCA---AC-ATTA-TC-CGTGCCC-GTGTACG-TGTACATAA--GCA--G-CAC----ATT------AACACG-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTTAC-TA-T--TTTTCC--G-TTTTATAAAC---TGA-AAT-GTGCCGG------TGC-TATCCAGA----GTTTAAAA--
gi|13 : tGTTACCA--AA--TGT--GCCGATCGGCGATGCG--GAAC--ATGTCCATT--TC----T-ACGAGAA--GGGAATTC--GTTTC---AG-TTTAAC-AAC-A-AA-----A-T--ATTTACA-GTGA--ATT--CGGA-C-AT--G-T-CATGTT-CCACCAAAAAT-GTAATTTA-C-GTCATAACGTGT-GCT-GGATGT-GA--AATACATTACA---T-C-GGTGAA-A-CTGG-A---ACTACTT-TA-CAAACTC-GTATAAGA-ATACATAA--AC-A-G-CATA---ATT------CA-ACA-CCT-GAATA-
gi|14 : ccATCATGAA-ATGT--AAAGATCCAAAATGCG--GGAT---TG-CCAAC--AT--ATC-AC-TGAA--GGG---TC--GGCATGCAAA-TTT--------G-GAA-CTGT-C--TTT--GAAGTTA--ACG--AA-A-AGAT--G-T-CATGTG-ATACGAAGAG-CGTTCTGTA-T-GTGATCATCTGT-CAT-GGATGT-AACGAGTA--TTACA---C-C-GGCGAA-A-CCA-TA---AC-CCTC-TT-TGTACCC-GTGTGC-GTGTTCACAA--GCAA---CACTTTTATTCAGTGCAACACA-C
gi|16 : -TATATTAG---TATA-TATCAAGAAAAA-CATAT-TTTGTAAAACGTC-T-GAAGAT-T--G-A-TGAAAG-CGCTA---ACGT-TTT-AC-------TTTG----T---GTTGTC-T---T---TTT---TACTTT
gi|17 : TACTA-TGACG-TCA-T--TGCATTGTTTAGTCCATACACGTTACAATTGTTATTTTGT---AAA------ATTTGTAAAACGTC-TTGAAGAT-ATTA-A-TGAAAG-CGCTA---ACGT-TTT-AC------ATCCG----T---GTTGCC-T---TTTATTT--TTACTTTaattttctttatgtaaataaccgtacactgagaaattta
gi|2 : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACCAGCTTAAAC----AACA--GATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCA-TTATTTAAA-ACAGCCATACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAA-ATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAATGA-ATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTA-A-AACGCAACGTGCAAATGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-ACT-AA-AGAAGATGAACAAACTAAAACTATATATGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATTGAGGAAAACCA-GACT-AT----CAGTAATCA--AAAGTGC--ACGGATCCCCGATGTG--GAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATT--AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CC-A-C-AT--G-T-C-TGTG-ACACTAAGGGTCGTTATTTA-T-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-T-GGCGAA-A-CTGGCA---AC-ACT--TC-CGTGCCC-GTGTACGGTGTACATAA--GCAAGG-CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGTTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---AAGC-TTT-ACGG-AGAATTTT----T---GTTTTC-T---T---TTT--GTACTTTTT
gi|21 : TACTTGTTA---TTC-T-GAAGAA-A--G-AATGAAAG-CGCTACGAACGC-TTTTACGGCAGAATTTT----TCGTGTTTTC-TTCTT---TTT--ATACTTGTT
gi|22 : AAAACGTC-T-GAGGATCA--A-A-CGAAAG-CGCTT---ACGT-TTT-AC-T-AG----------T---GTTGTCAT---T---TTTAAATACTTTTTttga
gi|3 : ataTCCAAATATT-AAGTTTACAATAGAAAGCAT-CGATAC--TATATTACCTTTTCTTGATGTCCTTGTCATGAAAGCGGATAC-A----AAACTGTTAACG--GATATCTATTACAAA--CCAACTGACACTCACCAATATCTACGATTTCGG-TTC-TGTCACCCGCACCAATTA--CAAAGACTGC-AT-CCTTATAATCTG---GCTTAACGTTTATGCGCTATAGTTAGTAATG-AAAACACCAGAGATATCCGTCTCAAG--AACTCAA-A--------AG--AACTCAAAAACAGAAATACCCACAAAAACTTATAGACGACGGGACTCTAAAAGCGAAGGGATAGGACCGATCA-----CAGTTGTTAT-CTACATGAAGCA--GAGAAAACAAGAAGGAAATA----ATA-CCA---TTTAT-ACATACGCACAA-CCCACGGAA-CCAGAA----TTTAATATCAACAATTCACCAACTTAACAACATTCT-AATACAGGATGAAACAACTAAGAAAATATTTCAAGA-TATGAAATTCATTAACAGCAAGCGCCA-AACCAAAAATCTCAAAC-GTATA------TTGTGCAATTCTCATTTTA--AAGACAACAGCT-GTTACACAGTCATGA--AA--TGT--AAAGATCCAAGATGCG--GGACTAATG-CCA----ACCTATC-AC-CGAA--GGC---TCGACATAC---AA-CTT--T-GAT-G-GA-----A-CAGTTTTCAAAGTCA--ACG--AA-AAT-AT--G-T-CATGCA-ATACTA-GGAACGTAGTGTA-T-GTGATAACCTG--CCATGGATGT-AACGAGTA--TTACA---T-C-GGCGAA-A-CCAGTA---AC-CCTC-TT-CGTTCCC-GTGTGC-GTGTTCACAA--GCAA---CAC----ATT------TACTCA-CCA-GAATA-CCGTCA-AATTCCTCT-A-AGTGAACATTTAGATATTTGT--GGAAATA-AAC-AA-TTTAG-TA-T--ATTTCC---CTTCTACAAAC---T--------TTCGGGAAGAACCAA-TATTCAAA-AGCG--TGAAA--AAGAAAAACATTCTAT---TCATTCG---TTT-A--AACCTAAA--C--AAT----------TGATT-------TGA-CGTT----ACCTT---T-GTATTACGCTGTTTTACTTTGA--CATCACAGTTGA-TTTGACATT----ACCATTGTATTCCGCCAATAT-GTATTA-TGACG-TCA-tt
gi|4 : TAGAACGCAGCTACT-TTCTA-ATAACGCAACGTGCAAATGATGATGAAATAACCTATATCTACCCTTGGTTGTACACTTATAATCC-AAGAACTTCGAAAACA--TCAAT-TCTATAATCC-TCAATTAA-CAACCTACTGAA-AGAAGATGAACAAAC-AAAACTATATTTGAAACGTA--AATTTTATCAACAGTAAACGTCATCCCTAAAAATCTGAAGACGGACACTCACTTTGTTC--TTCCAATTTGAG---AATCACGACTTATT---CAGTA-TCA--AATGTGTCAACGAATCCCCGATGTG--T-AC--ATG-CAAT---AC--ATTTAC-AGAAAAGGG---TCAAGTTAT---AAATTT--C-AAC-G-GAC-GTGA-C--TTTTAAA-GTTA--ATGGCCA-A-C-AT--G-T-CATGTG-ACACTAAGGGT-GTTATTTAAT-GTCAT-ACATGT-CCA-GGATGCTAATGAATA--TTATA---T-TTGGCGAA-A-CTGGCA---AC-ACTC-TC--GTGCTC-GTGTACG-TGTACATAA--GCAG-C-TAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-ACGGTGCTCACCTTGAAACCTGT--GGGAAT--AAC-AGTTTAAC-TA-T--TTTTCCAGGTTTTTATAAACT--TGATAAT-GTGCGGG------TGCTTATCCAGATGACG-TTGAAA--AAGAAAAACATTTCATATCTCA-TAC---TTT-A--AACCTTAA--CTTAATAGTC-TCTTGTGATTTTCCGTGTAA-TTTTTCCCACATTG-ATGGTATTA-----TC-TA---TGAATCGTCACTAT--ACTAGAACA-TAAAAAT------GTTCCGC-------TTAGCG-TGACGATC--TAATGCACTGT------CACTTATGT
gi|5 : gaGAGAACCACGA-T-ATT---CAGTA-TCA--AA-GTGC--ACGGATCCC--ATG-GTTGCAC--AT---AATTTTAC--ATT-AC-AGAA--GGA---T-AAGTTTTT--AA-TTTT-C-AACTGCGAC-GTGA-C--TTTTAAA-GTTA--ATGG-CC-A---ATTAG-TTCATGTGGACACTAAGGATGTTTATTTA-T-GTCATCACATGT--TA-AGATGC-AATTAATA--TGATA---T-T-TGCGAA-ATTTGGCATACAT-ACTC-TC-CGTGCCCTGTGTAT-GTTT-CATAA--G--A-GTCACT---ATT------AA-ACA-CCCTGAATATCCGATAGGCTCCAGCTGA-AGTGC-CAACTTCGTACCTGTGGGGGAA-A-AACAAG-TTCACTTATT--TTTTCC--G-TTTTAT-AACTTTTGA-AATGGTGCGGG------TGC-TATCCAG--GAC--TTGAAATTAAG-AAAACTTTTCAT---TCA-AACT--TTTAA--AACCTAAAATCTTAATAGTC-TCTTGCGATTGTCC-CGTAATTTTT--CCACATTGTAT-GTATTA-----TC--A--TGAA--CGTCAAAAT--A-TA-GACA-TTAACAC------GTTCCGC-------TTACCGTTGACG-TCATTAATCCACTAT------CAC--AT----T---TCTT-TAT-GT---AAATCAATTATTTGGTAAGCTTCTT-GAAGAT-A--GAA-TGAAAGCCGCTA---ACGCTTTT-ACGG-ATATTTTTTTTGT---GTTTTC-T---A---TTT--ATTTTTTTTac
gi|6 : ACAGT--G-TAG-----TTAAGAC------GT--CG--------TTATTG-TGACG-TCA-TAAtga
gi|7 : aaatgtgtcgtgtacatccagaaatttaatacactgcatgatttgtatctcctgcagagaaaattacataggacagaccggaactaagttagctgaccgtgtgaaagtccacaaacaacaaatacggaaccactccgtcaggaatacaccctgcagtgaacattttcatttatgtgctaatggaaactttctactttttccgttttacaaagttttagaaaacaatgaacatttacaaagaacgaaagaaaactatcttgtaaaattatttaaacccaagttgaatgctatttaatcatttactctcagttgtcatgttttaacccattactttatttatggcgccttattgactttaacttgcgccaatttattatgctgcctGAAGAACCACGACT-ATA---CAGAAAT-A--AA-GTGC--ACGGATCCACCATGTG--GG-T--ATG--AATT--TC--ATT-AC-AGAA--GGG---ACAAGT-AT---AA-TTT--CTAAC-A-AACCGTGAAC--TTC--AAAGTTAGTATG--CA-A-T-AT--GAT-CATGCG-ACATTAAAGGATATTATTTT-TTGTC--TACATGT-CCA-GGATGC-AATGAATAG-TTATAAATTGT-GGAGAAGA-CTAGCA----C-ATTTATCGCGTGCCG-TTGTA-AGTGTACATGACAGCA--G-CAC----ATT------AA-ACGGCCC-GAATA-ACGGCA-GCTCCAGCT-A-AGTGCTCACCT--GAACCTGT--GGG-ATACAAC-AGTTTAAC-TA-TTGTTTTCC--G--TTTATAAAC---TGA-AAT-GT-CCGG------TGC-TATCCAGA-----TGTGAAA--AAG-AAAATATTTCAT---TCATAGCCTTCTTAACTAACTTAAA--CATAcataacaaagactttgtatgtttgaaaacattacactctgaagagccgacatggcaaaagcgctaagtgtgataaatgtagataatttattcagtcatcgttggatttt
gi|8 : TTCAAATGTT-AAGTTTACAACAGAAAGCAG-CGATACTAAAT-T-ACTTTTTCTTGGTGTCATTGTCATAAAAGTGGATACGAAACTACTC----A-CGCTGATATCTATTACAAA--CCAACAGACACACACCA-AATCCAC-ATTTC-GGTTCCTGTCACCAGCACCA--TA-CCAAG-ACTACCATTCCTTATAATCGG---GCTAAATGTTTATGTGCTATAGTTAGTGATG-AAAACACCAGAGACATCTGTATCAAAGT-ACTCAAGAAC-TACCTATT-------AAAACAGAA--------AAAAAGTA---GACGACGGAATTCTAAAAGCGAA
gi|9 : ACAGT--G-TAG-----TTAAGAC------GT--CGT-----TATT--CG-TGACG-TCA-TAttggcatgattgggatacgaccaatcattactatctacaagaagcaaggaaagcaagaaggagaccataccatttata
blockSeqs : C C A TA A T T A C C GCT TGTT A CT AA C A G G G G AT TT G A C A A CAAG G A CA A C G T C G T A G GGA A ATCA TC CAGAAAT G C A C G AG C GAT G C AT CAT A T ACC T C T T C A A A A A A T G T T A C TG T T C C CACT AA A G C T TACA A TG AG CA CCC T TT T TA T TTT CT T G AA AAT A GCA A AAC T C CC A AG TA A GT GCCAAC TA A T A G TC A T C C T T T CA AATTGT G T TAC T TA G T AGA A CA AGG TTTT CAGTGC C G T T G G C T T GG C A T T T T TG AGGT TTT T G AAGAAC T GACGT TT A ATC T CTT A CT AT T ATCA T G T TC T G CGCTG T CTT AT TGA GGACAT T A CATTGT T CAATAT T A T G TTAGTC AC A AAT A C GAA T TA G T T ATTA A C CGA T T GGCAGAATTTTTCGT G A TTTA AAA
blockSeqs : . A . . A . T C G G AAC . A . . A . . G G C T C . T C T T GCTT C T GC A A T . A C A C C GT C GAAC T CAGAA C A A A A CT G . G . TT AT A C CA . C . T C T A . . A A T . . T T G T . A . C . . T G C . A A . TG . GCG C . A . . T . . . . . A T . TC . . C . . TA A . CCAAT . . . A . AC . . C A . . . G TTT . . . . A . . CGG A . AGT A . C . . . . . . T T . . . T A . . . GT T . . . . TGACG . A . T T A . . T AGTC T . . . . . . T T . AC TGACAT A A . T TA . . . G . TT G . . T . . TT G . . CAA . . . . . GGATATTTTTTTTGT G . TCTT T
blockSeqs : . A . . . . . C G . . . . . . A . . . . . . . . T . . T GCTA T T GC . A T . A C A C C A C A . T . A . . . CT G . . T A . T . . . . . . . . . . . . . . . . T . . . A . . . . T G C . T A . G . AAA C . G . . T . . . . . G T . CT . . A . . TC A . CGGAC . . . A . TG . . G C . . . . TT . . . . T . . CG T . AG T . C . . . . . . A A . . . . T . . . G . . . . . AGCG . A . T . A . . T AGTC G . . . . . . . T . A GAACA T C . T T . . . C . T G . . C . . AT T . . AGA . . . . . GGAGAATTTTT T . T G
blockSeqs : A C . T A . A . CCG T . A . . C . . . . . A . . C . . C . . TA A . AAAAG . . . A . AT . . A C . . . . TC . . . . C . . CG A . GC . . C . . . . . . T T . . . . A . . . C . . . . . GAC . . . . . . . . A . . . . . . . . . . . A GACA T G . T . . . . . . T G . . . . . . T . . TG . . . . . ATCCGT T . T A
blockSeqs : . C . A A . G . AAG C . G . . T . . . . . A . . C . . C . . TA A . AAAAT . . . A . T . . G A . . . . CC . . . . C . . CG T . G . . C . . . . . . T T . . . . C . . . G . . . . . GT . . . . . . . . . G G T G . . . . . . . . G . . AG . . . . . TTTGT G . T A
blockSeqs : . . . . A . G . CCG T . C . . T . . . . . A . . T . . C . . . . . CCAC . . . A . T . . C C . . . . TT . . . . C . . CG A . A . . . . . . . . . . . . . . . A . . . G . . . . . T . G G . . . . . . . . T . . AG . . . . . TAGT T . A .
blockSeqs : . . . . ACC T . G . . . . . . . . . . . C . . . . . . . . GCCA . . . A . C . . C T . . . . TC . . . . C . . TG A . A . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . CAAT . . . . . T . . C . . . . . TT . . . . . . . AG . . G . . . .
blockSeqCons : N*** G* *** CNAAC**** C* CG* GG** G*** TA***** GGAGAATTTNTT*******
originalCons : ATTCAGATATTCAAGTTCACNATGGAAAGCAGACGATAC--AATAT-GCCCTTTCTTGATGTCCTTGTNACGAAAGCCGACACCAGCTTAAAC----AACG--GATATCTATTACAAAAACCNACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCACCCGCACCA-TTATTCAAA-ACNGCCATACCNTATAACCCGCAAGCT-AANGNCTGTGCGNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAA-TATCCAGAANAACTAATCGACGACGGGATTNNGAAAGCNAAGG---AGTGTCGATTAGAA-GCAGCTACT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACATACT-AA-AGAAGATGAACAAACTAAAACTATATNTGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAANTCTGAAGA-GGATACT----TTGTTC--TTCCCANTTGAGGAGAACCACGACT-ATT---CAGTAATCA--AA-GTGC--ACGGATCCCCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTAT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATG--CN-A-C-AT--G-T-CATGCG-ACACTAAGGGTCGTTATTTA-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-C-GGCGAA-A-CTGGCA---AC-ACTC-TC-CGTGCCC-GTGTACGGTGTACATAA--GCAA-G-CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCC--GTTTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATAGTCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGC-----T-TTACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGG-AGAATTTT----T---GTTTTC-T---T---TTT--ATACTTTTT
finalCons : ATTCAGATATTCAAGTTCACNATGGAAAGCAGACGATAC--AATAT-GCCCTTTCTTGATGTCCTTGTNACGAAAGCCGACACCAGCTTAAAC----AACG--GATATCTATTACAAAAACCNACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCACCCGCACCA-TTATTCAAA-ACNGCCATACCNTATAACCCGCAAGCT-AANGNCTGTGCGNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAA-TATCCAGAANAACTAATCGACGACGGGATTNNGAAAGCNAAGG---AGTGTCGATTAGAA-GCAGCTACT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACATACT-AA-AGAAGATGAACAAACTAAAACTATATNTGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAANTCTGAAGA-GGATACT----TTGTTC--TTCCCANTTGAGGAGAACCACGACT-ATN---CAGTAATCA--AAG-TGC--ACGGATCCCCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTAT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--ATGCNAAC----AT--G-T-CATGCG-ACACTAAGGGTCGTTATTTA-T-GTCATCACATGT-CCA-GGATGC-AATGAATA--TTATA---T-C-GGCGAA-A-CTGGCA---AC-ACTC-TC-CGTGCCC-GTGTACG-TGTACATAA--GCAGG--CAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCCG---TTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATAGTCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGCTA-----TTACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGGAGAATTTNTT-------GTTTTC-T---T---TTT--ATACTTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTGTGATTTGTATCTCCTGCAGAGAAAATGACACAGAACAGACAGGAACTATAATTATAAGCTAATCGACTGCGAGGTCCACAAACAACAAATACGGGATCCATCTGTCGGAATACACCCTGCAGTGAGCATTTTGATTTATGTGCCAGGGAAAACATTTTTATTTTCCCATTTTATAAAGTTTTAGAAACAATGAAGTTTTTATGACATTTATGGGGAGTGAAAGAGTATTATTCTGTGAAATTATTCAAACCCAAGTTGAATGTATTTTAATTTTGTCATATTCAAACCCATTAATTTATCTTTGGCACCTTATTGA
Unaligned ( gi|12 ): TAGTGTATCAGGATTCTAAACCCAATTAGCTTCATCGTAGCTTTTATAGCGCTCCTCTACATTGGACTTTAACTTGCGCCAATTTTATACTCGCTAGGCCATTATCTACGACGCTCAATCAATAAACAGGACTTTTTCTTAATACATACAACTGGTCATATGACAAATCGACTGTATTTAAACAAAAAAATCAATTACAATCTGATTAGACGCCAGCCGACTAAGTGGTTGATAGAAGCCCTCTATAGTGGGATAGATTTAAAATAA
Unaligned ( gi|15 ): TGCGCCAATGCTGCTTTTGTGAGGTCACAATATAACTACGTCATAAAAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCAATCATTGGATTTTTTC
Unaligned ( gi|18 ): AATATAACTACGTCATAACAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCATCATTGGATTTTTT
Unaligned ( gi|19 ): TATAATATCAAAACAAAGACTGTTAAACTCTGAAGAGCCGACATATAGCGAAAACGCAAAGTATGATAAATGCGTATTCAGTCACCGTTGGATTTCTCTCTCTCTC
Unaligned ( gi|20 ): ACAACATTCTCAGACAAGATGAATCTTCTACGAAAATATTTCAAGATGACATCAAACGCCAACCTAAAAATTTCAAACGTACATTGTGCAAGTC
Alignments
lowQualScore : 1 1 11 1 1 2222 11 11 1 1 11 11 1 4444444 1 1 11111 11 3333333 1 222 1 111 111 111 1 1 1 1 1 1 11 1 1 2222 11 1 1 11111 1111 11 11 11 111 11 11 1111 111111 1 222 111 111111 111111 111 111 22222 11 22222 1 111 11 111111 111111 22222 1 222222 11 111 111 111 44444444444444444 111 111
lowQualScore : 5 1 5 33 3 0 5 1 2 8 999 1111 3 33 88 1 0 0 0 0 2 2 8 33 66 0 1 2 9 1 0 9999999 1 1 33 5 1 1 5 1 1 1 1 2 888 1 66666 0 22 0 0 9999999 0 2 1 3 2 5 2 22 1 333 0 2 0 111 666 3 2 555 0 2 0 0 3 2 9 3 9 0 3 3 5 0 0 3 1 8 33 0 1 0 2 1111 33 1 0 1 4 5 2 0 1 8 66 77 66 222 4 66 6 66 4 666 66 4 4 66 777 3 55555 4 2222 4 4 88 4 66 44 1 66 4 4 88 4 4 1 0 4 33 4 4 1 2 8 4 4 00 222 55 4 4 0 777 4 11 66 4 8 2 66 8 66 8888 222222 6 4 5 5 5 5 5 1 1 77 5 5 1 1 5 5 77 111 555 5 5 0 666666 5 888888 77 7 111 7 888 7 99 99 3 22222 5 8 8 11 8 8 00000 0 111 11 8888 222222 1 2 666666 5 66666 5 44 5 5 5 5 333333 55 1 444 8 3 444 8 22 0 1 5 5 888888 5 5 000 5 5 77777777777777777 5 000 333
lowQualScore : . . . .. . . . . . . ... .... . .. .. . . . . . . . . .. .. . . . . . . ....... . . .. . . . . . . . . . ... . ..... . .. . . ....... . . . . . . . .. . ... . . . ... ... . . ... . . . . . . . . . . . . . . . . . . .. . . . . .... .. . . . . . . . . . .. .. .. ... . .. . .. . ... .. . . .. ... . ..... . .... . . .. . .. .. . .. . . .. . . . . . .. . . . . . . . .. ... .. . . . ... . .. .. . . . .. . .. .... ...... . . . . . . . . . .. . . . . . . .. ... ... . . . ...... . ...... .. . ... . ... . .. .. . ..... . . . .. . . ..... . ... .. .... ...... . . ...... . ..... . .. . . . . ...... .. . ... . . ... . .. . . . . ...... . . ... . . ................. . ... ...
lowQualScore : 0 0 5 88 2 0 5 0 5 8 888 2222 2 88 55 0 2 2 0 0 5 5 8 22 22 0 0 5 8 0 2 0000000 0 0 55 5 0 0 5 0 0 0 0 5 222 0 22222 8 00 2 2 8888888 8 5 0 2 5 0 0 00 0 333 7 5 0 000 555 2 0 555 0 5 0 2 2 5 8 2 2 0 2 2 5 0 0 2 0 8 22 0 0 0 5 2222 88 0 0 7 3 7 1 4 9 9 11 33 11 333 4 11 4 11 4 999 11 4 4 11 888 6 44444 4 3333 4 4 33 4 11 44 9 11 4 4 99 4 4 9 7 4 44 4 4 1 9 9 4 4 66 222 11 4 4 9 888 4 99 33 4 9 2 11 9 99 3333 888888 7 4 0 0 7 7 7 7 7 99 7 7 4 9 7 7 99 444 777 7 7 7 444444 7 666666 99 3 777 3 333 3 22 22 5 00000 6 0 0 00 0 0 00000 6 888 00 9999 000000 7 1 444444 0 99999 0 66 0 0 0 0 000000 00 0 000 0 2 000 0 00 4 3 7 7 666666 7 7 000 7 7 66666666666666666 7 000 999
consensus : ATTCAGATATTCAAGTTCACNATGGAAAGCAGACGATAC--AATAT-GCCCTTTCTTGATGTCCTTGTNACGAAAGCCGACACCAGCTTAAAC----AACG--GATATCTATTACAAAAACCNACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCACCCGCACCA-TTATTCAAA-ACNGCCATACCNTATAACCCGCAAGCT-AANGNCTGTGCGNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAA-TATCCAGAANAACTAATCGACGACGGAATTNNGAAAGCNAAGG---AGTGTCGATTAGAA-GCAGCTACT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACATACT-AA-AGAAGATGAACAAACTAAAACTATATNTGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAANTCTGAAGA-GGATACT----TTGTTC--TTCCCANTT-GAGGAGAACCACGACT-ATACAGTAATC-A--AA-GTGC--ACGGATCCCCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTA-T---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--AT-G-CCAAC-ATG-TCATGCG-ACACTAAGGGTCGTTATTT-AT-GTCATCACATG-TCCA-GGATGC-AATGAATA--TTATA---T-CGGCGAA-A-CTGGCA---AC-ACTC-TC-CGTGCCC-GTGTAC-GTGTACATAA--GC-AGGCAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCCG---TTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATAGTCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGC---TAT-TACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGG-AGAATT--TNT---TGTTTTC-T---TTTT--ATACTTTTT
Reference ( family-665 ) : ATTCAGATATTCAAGTTCACNATGGAAAGCAGACGATAC--AATAT-GCCCTTTCTTGATGTCCTTGTNACGAAAGCCGACACCAGCTTAAAC----AACG--GATATCTATTACAAAAACCNACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCACCCGCACCA-TTATTCAAA-ACNGCCATACCNTATAACCCGCAAGCT-AANGNCTGTGCGNTATNGTNAGCAATGTANAACACNAGAGATNTNCGCCTCGAGGGAACTNAA-ATCATATCTAGTCAGCCCAAAAGCAGAA-TATCCAGAANAACTAATCGACGACGGGATTNNGAAAGCNAAGG---AGTGTCGATTAGAA-GCAGCTACT-T-CTA-ATAACGCAACGTGCAAACGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACATACT-AA-AGAAGATGAACAAACTAAAACTATATNTGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAANTCTGAAGA-GGATACT----TTGTTC--TTCCCANTT-GAGGAGAACCACGACT-ATNCAGTAATC-A--AA-GTGC--ACGGATCCCCGATGCG--GGAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTA-T---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--AT-G-CNAAC-ATG-TCATGCG-ACACTAAGGGTCGTTATTT-AT-GTCATCACATG-TCCA-GGATGC-AATGAATA--TTATA---T-CGGCGAA-A-CTGGCA---AC-ACTC-TC-CGTGCCC-GTGTAC-GTGTACATAA--GC-AGGCAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCCG---TTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATAGTCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAGT--A-TAGGACATTTAAAAC------GTTCCGC---TAT-TACCG-TGACG-TCA-TAATGCACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---ACGC-TTT-ACGG-AGAATT--TNT---TGTTTTC-T---TTTT--ATACTTTTT
gi|1 : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACCAGCTTAAAC----AACA--GATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCA-TTATTTAAA-ACAGCCATACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAA-ATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAAT-GAATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTA-A-AACGCAACGTGCAAATGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-ACT-AA-AGAAGATGAACAAACTAAAACTATATATGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATT-GAGGAAAACCA-GACT-AT-CAGTAATCAA--AA-GTGC--ACGGATCCCCGATGTG--GAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--AT-G-CC-AC-ATG-TC-TGTG-ACACTAAGGGTCGTTATTT-AT-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-TGGCGAA-A-CTGGCA---AC-ACT--TC-CGTGCCC-GTGTACGGTGTACATAA--GCAAGGCAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGTTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCCGT--TTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAGGACATTTAAAAC------GTTCCGC---T-T-TACCG-TGACG-TCA-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---AAGC-TTT-ACGG-AGAATT--T-T---TGTTTTC-T---TTTT--GTACTTTTT
gi|10 : GAGAACCACGACT-ATACAG-AATC-A--AA-GTGC--ACGGATCCCCCATGTG--GTAC--ATG-CAATT--GC--ATT-AC-AGAA--GGG---ACAAGTTA-T---AA-TTT--C-AAC-A-AAC-GTGA-C--TTC--AAAGTTA--AT-G-CCAAT-ATG-TCATGCG-ACATTAAGGAT-ATTATTT-TT-GTCATCACATG-TCCA-GGATGC-AATGAATA--TTATA---T-TGGAGAA-A-CTAGCA---AC-ATTA-TC-CGTGCCC-GTGTAC-GTGTACATAA--GC-AG-CAC----ATT------AACACG-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGCTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTTAC-TA-T--TTTTCCG---TTTTATAAAC---TGA-AAT-GTGCCGG------TGC-TATCCAGA----GTTTAAAA--
gi|13 : tGTTACC-A--AA--TGT--GCCGATCGGCGATGCG--GAAC--ATGTCCATT--TC----T-ACGAGAA--GGGAATTC--GTTT-C---AG-TTTAAC-AAC-A-AA-----A-T--ATTTACA-GTGA--AT-T-CGGAC-ATG-TCATGTT-CCACCAAAAAT-GTAATTT-AC-GTCATAACGTG-TGCT-GGATGT-GA--AATACATTACA---T-CGGTGAA-A-CTGG-A---ACTACTT-TA-CAAACTC-GTATAA-GAATACATAA--AC-A-GCATA---ATT------CA-ACA-CCT-GAATA-
gi|14 : ccATC-ATGAA-ATGT--AAAGATCCAAAATGCG--GGAT---TG-CCAAC--AT--ATC-AC-TGAA--GGG---TC--GGCA-TGCAAA-TTT--------G-GAA-CTGT-C--TTT--GAAGTTA--AC-G-AAAAG-ATG-TCATGTG-ATACGAAGAG-CGTTCTGT-AT-GTGATCATCTG-TCAT-GGATGT-AACGAGTA--TTACA---C-CGGCGAA-A-CC-ATA---AC-CCTC-TT-TGTACCC-GTGTGC-GTGTTCACAA--GC-A-ACACTTTTATTCAGTGCAACACA-C
gi|16 : -TATATTAG---TATA-TATCAAGAAAAA-CATAT-TTTGTAAAACGTC-T-GAAGAT-T--G-A-TGAAAG-CGCTA---ACGT-TTT-AC-------TT--TG----TGTTGTC-T---TTTT---TACTTT
gi|17 : -TACTA-TGACG-TCA-T--TGCATTGTTTAGTCCATACACGTTACAATTGTTATTTTGT---AAA------ATTTGTAAAACGTC-TTGAAGAT-ATTA-A-TGAAAG-CGCTA---ACGT-TTT-AC------ATCCGTGT---TGCCTTT-T---ATTT--TTACTTTaattttctttatgtaaataaccgtacactgagaaattta
gi|2 : ATTCAGATATTCAAATTCACCATGGAAAGCAGACAATAC--AATAT-GCCCTTTCT-GATGTTCTTGTAACGAAAACCAACACCAGCTTAAAC----AACA--GATATCTATTATAAAAACCCACGGACACCCACCA-TACCTAC-ATTTCGGGTTCGTGCCATCCACACCA-TTATTTAAA-ACAGCCATACCATATAACCCGCAAG---AAGGACTGTACCAT-TCGTGAGCAATATACAATACGAGAGATTTACGCCTGGAGGGAATTAAA-ATCATATCTAGTCAGCCCAAAAG------TATCCAGAACAACTAATCAACAAT-GAATTAGGAAAGCCAAGG---AGTGTTGATTAGAA-GCAGCTACT-T-CTA-A-AACGCAACGTGCAAATGATGATGAAATA-CATATA-CTACCCTTTGT-GCACACCTATAATCCCAAGGAAATCGGAAACAATTCAAT-TCTATAATCCATCAATTAAACAACA-ACT-AA-AGAAGATGAACAAACTAAAACTATATATGAAAACTAT-AATTTTATCAACAGTAAACGTCA-ACCTAAAATTCTGAAGA-GGATACT----TTGTTC--TTCCCAATT-GAGGAAAACCA-GACT-AT-CAGTAATCAA--AA-GTGC--ACGGATCCCCGATGTG--GAAC--ATG-CAATT--AC--ATT-AC-AGAA--GGG---TCAAGTTATT---AA-TTT--C-AAC-G-GAC-GTGA-C--TTTTAAAAGTTA--AT-G-CC-AC-ATG-TC-TGTG-ACACTAAGGGTCGTTATTT-AT-GTAATCACATGTTCCA-GGATGC-AATGAATA--TTATA---T-TGGCGAA-A-CTGGCA---AC-ACT--TC-CGTGCCC-GTGTACGGTGTACATAA--GCAAGGCAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-A-AGTGTTCACCTTGAAACCTGT--GGGAATA-AAC-AG-TTAAC-TA-T--TTTTCCGT--TTTTATAAAC---TGA-AAT-GTGCGGG------TGC-TATCCAGA-GACGTTTGAAA--AAGAAAAACATTTCAT---TCATTAC---TTTAA--AACCTAAA--CTTAATA-TCATCTTGTGATTTTCC-CGTAA-TTTT--CCACATTG-AT-GTATTA-----TCTTA--TTGA--CGTCACAAT--A-TAGGACATTTAAAAC------GTTCCGC---T-T-TACCG-TGACG-TCA-TAAT-CACTGT------CAC-TATGTTAC---TGTT-TATCGT---AAA-CATTTATTTGTAAAGCTTC-T-GAAGAT-A--G-A-TGAAAG-CGCTA---AAGC-TTT-ACGG-AGAATT--T-T---TGTTTTC-T---TTTT--GTACTTTTT
gi|21 : TACTTGTTA---TTC-T-GAAGAA-A--G-AATGAAAG-CGCTACGAACGC-TTTTACGGCAGAATT--TTTCG-TGTTTTC-TTCTTTTT--ATACTTGTT
gi|22 : AAAACGTC-T-GAGGATCA--A-A-CGAAAG-CGCTT---ACGT-TTT-AC-----------TAG---TGTTGTCAT---TTTTAAATACTTTTTttga
gi|3 : ataTCCAAATATT-AAGTTTACAATAGAAAGCAT-CGATAC--TATATTACCTTTTCTTGATGTCCTTGTCATGAAAGCGGATAC-A----AAACTGTTAACG--GATATCTATTACAAA--CCAACTGACACTCACCAATATCTACGATTTCGG-TTC-TGTCACCCGCACCAATTA--CAAAGACTGC-AT-CCTTATAATCTG---GCTTAACGTTTATGCGCTATAGTTAGTAATG-AAAACACCAGAGATATCCGTCTCAAG--AACTCAA-A--------AG--AACTCAAAAACAGAAATACCCACAAAAACTTATAGACGACGGGACTCTAAAAGCGAAGGGATAGGACCGATCA-----CAGTTGTTAT-CTACATGAAGCA--GAGAAAACAAGAAGGAAATA----ATA-CCA---TTTAT-ACATACGCACAA-CCCACGGAA-CCAGAA----TTTAATATCAACAATTCACCAACTTAACAACATTCT-AATACAGGATGAAACAACTAAGAAAATATTTCAAGA-TATGAAATTCATTAACAGCAAGCGCCA-AACCAAAAATCTCAAAC-GTATA------TTGTGCAATTCTCATTTTAAAGACAACAGCTGTT-ACACAGTCATG-A--AA--TGT--AAAGATCCAAGATGCG--GGACTAATG-CCA----ACCTATC-AC-CGAA--GGC---TCGACATA-C---AA-CTT--T-GAT-G-GA-----A-CAGTTTTCAAAGTCA--AC-G-AAAAT-ATG-TCATGCA-ATACTA-GGAACGTAGTGT-AT-GTGATAACCTG--CCATGGATGT-AACGAGTA--TTACA---T-CGGCGAA-A-CCAGTA---AC-CCTC-TT-CGTTCCC-GTGTGC-GTGTTCACAA--GC-A-ACAC----ATT------TACTCA-CCA-GAATA-CCGTCA-AATTCCTCT-A-AGTGAACATTTAGATATTTGT--GGAAATA-AAC-AA-TTTAG-TA-T--ATTTCCC---TTCTACAAAC---T--------TTCGGGAAGAACCAA-TATTCAAA-AGCG--TGAAA--AAGAAAAACATTCTAT---TCATTCG---TTT-A--AACCTAAA--C--AAT----------TGATT-------TGA-CGTT----ACCTT---T-GTATTACGCTGTTTTACTTTGA--CATCACAGTTGA-TTTGACATT----ACCATTGTATTCCGCCAATATGTATTA-TGACG-TCA-tt
gi|4 : TAGAACGCAGCTACT-TTCTA-ATAACGCAACGTGCAAATGATGATGAAATAACCTATATCTACCCTTGGTTGTACACTTATAATCC-AAGAACTTCGAAAACA--TCAAT-TCTATAATCC-TCAATTAA-CAACCTACTGAA-AGAAGATGAACAAAC-AAAACTATATTTGAAACGTA--AATTTTATCAACAGTAAACGTCATCCCTAAAAATCTGAAGACGGACACTCACTTTGTTC--TTCCAATTT-GAG---AATCACGACTTATTCAGTA-TC-A--AATGTGTCAACGAATCCCCGATGTG--T-AC--ATG-CAAT---AC--ATTTAC-AGAAAAGGG---TCAAGTTA-T---AAATTT--C-AAC-G-GAC-GTGA-C--TTTT-AAAGTTA--ATGG-CCAAC-ATG-TCATGTG-ACACTAAGGGT-GTTATTTAAT-GTCAT-ACATG-TCCA-GGATGCTAATGAATA--TTATAT--T-TGGCGAA-A-CTGGCA---AC-ACTC-T--CGTGCTC-GTGTAC-GTGTACATAA--GC-AGCTAC----ATT------AACACA-CCC-GAATA-CCGGCA-GCTCCAGCT-ACGGTGCTCACCTTGAAACCTGT--GGGAAT--AAC-AGTTTAAC-TA-T--TTTTCCAGGTTTTTATAAACT--TGATAAT-GTGCGGG------TGCTTATCCAGATGACG-TTGAAA--AAGAAAAACATTTCATATCTCA-TAC---TTT-A--AACCTTAA--CTTAATAGTC-TCTTGTGATTTTCCGTGTAA-TTTTTCCCACATTG-ATGGTATTA-----TC-TA---TGAATCGTCACTAT--ACTAGAACA-TAAAAAT------GTTCCGC-----T-TAGCG-TGACGATC--TAATGCACTGT------CACTTATGT
gi|5 : gaGAGAACCACGA-T-ATTCAGTA-TC-A--AA-GTGC--ACGGATCCC--ATG-GTTGCAC--AT---AATTTTAC--ATT-AC-AGAA--GGA---T-AAGTTT-TT--AA-TTTT-C-AACTGCGAC-GTGA-C--TTTTAAA-GTTA--AT-GGCCAATTAGT-TCATGTGGACACTAAGGATGTTTATTT-AT-GTCATCACATG-T-TA-AGATGC-AATTAATA--TGATA---T-TTGCGAA-ATTTGGCATACAT-ACTC-TC-CGTGCCCTGTGTAT-GTTT-CATAA--G--AGTCACT---ATT------AA-ACA-CCCTGAATATCCGATAGGCTCCAGCTGA-AGTGC-CAACTTCGTACCTGTGGGGGAA-A-AACAAG-TTCACTTATT--TTTTCCG---TTTTAT-AACTTTTGA-AATGGTGCGGG------TGC-TATCCAG--GAC--TTGAAATTAAG-AAAACTTTTCAT---TCA-AACT--TTTAA--AACCTAAAATCTTAATAGTC-TCTTGCGATTGTCC-CGTAATTTTT--CCACATTGTAT-GTATTA-----TC--A--TGAA--CGTCAAAAT--A-TA-GACA-TTAACAC------GTTCCGC-----T-TACCGTTGACG-TCATTAATCCACTAT------CAC--AT----T---TCTT-TAT-GT---AAATCAATTATTTGGTAAGCTTCTT-GAAGAT-A--GAA-TGAAAGCCGCTA---ACGCTTTT-ACGG-ATATTT--TTTTTGTGTTTTC-T---ATTT--ATTTTTTTTac
gi|6 : ACAGT--G-TAG-----TTAAGAC------GT--CGT---TAT-T---G-TGACG-TCA-TAAtga
gi|7 : aaatgtgtcgtgtacatccagaaatttaatacactgcatgatttgtatctcctgcagagaaaattacataggacagaccggaactaagttagctgaccgtgtgaaagtccacaaacaacaaatacggaaccactccgtcaggaatacaccctgcagtgaacattttcatttatgtgctaatggaaactttctactttttccgttttacaaagttttagaaaacaatgaacatttacaaagaacgaaagaaaactatcttgtaaaattatttaaacccaagttgaatgctatttaatcatttactctcagttgtcatgttttaacccattactttatttatggcgccttattgactttaacttgcgccaatttattatgctgcctGAAGAACCACGACT-ATACAGAAAT--A--AA-GTGC--ACGGATCCACCATGTG--GG-T--ATG--AATT--TC--ATT-AC-AGAA--GGG---ACAAGT-A-T---AA-TTT--CTAAC-A-AACCGTGAAC--TTC--AAAGTTAGTAT-G-C-AAT-ATGATCATGCG-ACATTAAAGGATATTATTT-TTTGTC--TACATG-TCCA-GGATGC-AATGAATAG-TTATAAATTGTGGAGAAGA-CTAGCA----C-ATTTATCGCGTGCCG-TTGTAA-GTGTACATGACAGC-AG-CAC----ATT------AA-ACGGCCC-GAATA-ACGGCA-GCTCCAGCT-A-AGTGCTCACCT--GAACCTGT--GGG-ATACAAC-AGTTTAAC-TA-TTGTTTTCCG----TTTATAAAC---TGA-AAT-GT-CCGG------TGC-TATCCAGA-----TGTGAAA--AAG-AAAATATTTCAT---TCATAGCCTTCTTAACTAACTTAAA--CATAcataacaaagactttgtatgtttgaaaacattacactctgaagagccgacatggcaaaagcgctaagtgtgataaatgtagataatttattcagtcatcgttggatttt
gi|8 : TTCAAATGTT-AAGTTTACAACAGAAAGCAG-CGATACTAAAT-T-ACTTTTTCTTGGTGTCATTGTCATAAAAGTGGATACGAAACTACTC----A-CGCTGATATCTATTACAAA--CCAACAGACACACACCA-AATCCAC-ATTTC-GGTTCCTGTCACCAGCACCA--TA-CCAAG-ACTACCATTCCTTATAATCGG---GCTAAATGTTTATGTGCTATAGTTAGTGATG-AAAACACCAGAGACATCTGTATCAAAGT-ACTCAAGAAC-TACCTATT-------AAAACAGAA--------AAAAAGTA---GACGACGGAATTCTAAAAGCGAA
gi|9 : ACAGT--G-TAG-----TTAAGAC------GT--CGT---TAT-T--CG-TGACG-TCA-TAttggcatgattgggatacgaccaatcattactatctacaagaagcaaggaaagcaagaaggagaccataccatttata
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTGTGATTTGTATCTCCTGCAGAGAAAATGACACAGAACAGACAGGAACTATAATTATAAGCTAATCGACTGCGAGGTCCACAAACAACAAATACGGGATCCATCTGTCGGAATACACCCTGCAGTGAGCATTTTGATTTATGTGCCAGGGAAAACATTTTTATTTTCCCATTTTATAAAGTTTTAGAAACAATGAAGTTTTTATGACATTTATGGGGAGTGAAAGAGTATTATTCTGTGAAATTATTCAAACCCAAGTTGAATGTATTTTAATTTTGTCATATTCAAACCCATTAATTTATCTTTGGCACCTTATTGA
Unaligned ( gi|12 ): TAGTGTATCAGGATTCTAAACCCAATTAGCTTCATCGTAGCTTTTATAGCGCTCCTCTACATTGGACTTTAACTTGCGCCAATTTTATACTCGCTAGGCCATTATCTACGACGCTCAATCAATAAACAGGACTTTTTCTTAATACATACAACTGGTCATATGACAAATCGACTGTATTTAAACAAAAAAATCAATTACAATCTGATTAGACGCCAGCCGACTAAGTGGTTGATAGAAGCCCTCTATAGTGGGATAGATTTAAAATAA
Unaligned ( gi|15 ): TGCGCCAATGCTGCTTTTGTGAGGTCACAATATAACTACGTCATAAAAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCAATCATTGGATTTTTTC
Unaligned ( gi|18 ): AATATAACTACGTCATAACAAAGACTGTGTATTTGAAATTGTTTTACTCTGAAAAGCAGACGTGGCAAAAGAGGCGTGATTATAATTGTGGATGATGCCTATTTAGTCATCATTGGATTTTTT
Unaligned ( gi|19 ): TATAATATCAAAACAAAGACTGTTAAACTCTGAAGAGCCGACATATAGCGAAAACGCAAAGTATGATAAATGCGTATTCAGTCACCGTTGGATTTCTCTCTCTCTC
Unaligned ( gi|20 ): ACAACATTCTCAGACAAGATGAATCTTCTACGAAAATATTTCAAGATGACATCAAACGCCAACCTAAAAATTTCAAACGTACATTGTGCAAGTC