lowQualScore : 2222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 222 11 222 1 1 1 66666666666666666666666666 2222 1111 333 22 11 1 22222 1 333333333333333 222222222222 1 1 33333333333333 11 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 33333333 8888888888888888888888888888888888888 111 1111111 11 777777777777777777777777777777777777777777777 1 1 2 222222 1 2 222222 111 22222 33333333 1 55555 11 1 1 777 2 333333333333333333333 00000000000000000000000000000000000000000000000000000000000000000000000 111 2222222 1 1 44444444444444444444444444444444444444444444444444 333333333 1 1 4444444 1 1 111 222 1 1 1 11 222 33333333333 111 111 11 1 11 111 1 1 555555555555555555555555555555555555555555555555555555555555 1 22222 333 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 444444444 333333 11 11 3333 11 77777777777777 22222 22 44444 4 1 4
lowQualScore : 7 4 333 22 0 3 1 111 0 0 0 3 44444444444444444444444444 2 2 1 5555 8888 3 6 2 2 555 22 3 77 5 44 33333 1 5 9999 3 444444444444444 6 0 99 6 6 99 000000000000 0 1 0 1 66 0 11111111111111 777 5 33 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 22222222 8 0000000000000000000000000000000000000 333 4 4 66 0 4 777 5 5 1 1 99 6 8888888 7 6 7 11 4 222222222222222222222222222222222222222222222 0 1 3 7 6 6 111111 3 0 888888 888 55555 33333333 0 22222 3 3 33 0 2 0 000 6 3 333333333333333333333 66 44444444444444444444444444444444444444444444444444444444444444444444444 111 5555555 0 5 55555555555555555555555555555555555555555555555555 333 666666666 0 6 0 1111111 0 0 777 000 0 0 6 11 88 333 99999999999 666 777 88 3 88 777 3 3 555555555555555555555555555555555555555555555555555555555555 888 3 7 66666 2 000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 4 999999999 4 111111 2 88 88 6666 44 77777777777777 88888 77 22222 0 5 6 6 0
lowQualScore : . . ... .. . . . ... . . . . .......................... . . . .... .... . . . . ... .. . .. . .. ..... . . .... . ............... . . .. . . .. ............ . . . . .. . .............. ... . .. . ................................................................................... . ........ . ..................................... ... . . .. . . ... . . . . .. . ....... . . . .. . ............................................. . . . . . . ...... . . ...... ... ..... ........ . ..... . . .. . . . ... . . ..................... .. ....................................................................... ... ....... . . .................................................. ... ......... . . . ....... . . ... ... . . . .. .. ... ........... ... ... .. . .. ... . . ............................................................ ... . . ..... . ... ......................................................................................................................................................... . . ......... . ...... . .. .. .... .. .............. ..... .. ..... . . . . .
lowQualScore : 2 0 888 00 8 2 2 555 0 0 0 2 55555555555555555555555555 5 0 2 8888 0000 2 5 5 5 000 55 0 55 0 33 88888 0 3 3333 3 555555555555555 7 3 22 7 7 22 777777777777 9 7 7 4 99 0 77777777777777 111 0 00 7 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 00000000 0 2222222222222222222222222222222222222 999 4 4 11 9 4 888 7 7 7 8 22 7 5555555 7 7 8 88 0 222222222222222222222222222222222222222222222 0 2 3 3 7 7 000000 3 0 888888 555 00000 55555555 0 55555 2 2 22 0 2 0 000 0 0 000000000000000000000 11 22222222222222222222222222222222222222222222222222222222222222222222222 000 0000000 0 5 55555555555555555555555555555555555555555555555555 888 555555555 0 0 0 2222222 0 0 555 888 0 0 0 77 33 333 77777777777 333 777 33 3 33 777 3 3 000000000000000000000000000000000000000000000000000000000000 333 3 3 33333 5 555 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 555555555 0 555555 5 33 33 0000 55 55555555555555 55555 55 00000 0 0 0 0 0
consensus : NNNTCAATNTTNGTA-AAAAGCTC-TTTCATTGTTTNC-ACATTATC-AAAA-GG-CTGTTTCGTGTAGGC--AAAATA-CGCTACATTCCAAAAGAACGT--GNTGT-A-TAGTTAACGGACAGTCANAANATGTGATACATTCGGGCTNTAAGNTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATAATAACTTCAT-CC------TGG-CGTTTCAGTATGACGTT--ACTCGGTTTG-TTT--ACTT-G-TTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAAT-CCCA--AT--A-TANTT-GCCAAAGAGAATTTACA-T-T------AGTTTT-ATAAGGT-----ATTT---TAC-----AT-CAGT--ATNGGG----------A--ATT-TTAT--AGTGTA-CAATATCGTATT--GAA---GTGCATC-TTTTG-C-C--------T-TTGGTA-T-C---CGCTTT-GTCTGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGA---ACTC-AA-CTATTTTACN-TTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAGTA----------------TATCTA---AA-C-ATG-TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTGAGCTGTAGACAAGATAGAGAGTCTGA-AAATATGGTAAAA------ATGTTT-GNCA-----TTGGAA-ANC--T-TAA-TATA-CTTGAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-TCTTG-------TAG-------AG--------A-------A---------ATAGCC----NTTT-CT-TCGAGCTGTATAA-A-TTGTT-GCCT--CGT-TTTGGAAGTCTTGTAGAG--ANCACATC--GTGC----TA-TACTGC-AGCGGNA-GCGACATTAAA-TTTTGGTCTTTTGA-------TCCATCT-GTATAAA-TAT---C--AATCGT-AGA-ATGT---TTNA-CC-TGT-TTT-TTTCGAAAGAA--TTTT---GTTT------GAA--AA-AACGGGA-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAGAAAGT-GATGT-GTC-T-TCT---T----AGGTTT----T-ATTA-ATT------T-C-CATGACGGTATTTC-AGAACACG--TTGAGNGTTTNAAACAATGTCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCNGCGTAAAGGCCAATATTATGTGAGTCGATTTTTTTTCCAAANCTCGTCTTTCTTTANGANCAATTGATACGNTATTATACATTTCTTTATTTTGCTCATGNAACTTCNAACTGCGGNTGGAAAACGCNGNCAGATGCAGGNTTGTCANCG--TTAGC--TTTCNGACTTAANNATGTGCTTTCTGCCATATAAAAAGAGATTGTTTTATTTTCTGCGTCGATGCTAGA-GTGGGTTGTTTGTCTCAACATAC
Reference ( gi|1 ) : CATTCAATTTTAGTA-ATAAGCTC-CTTCATTGTTTTT-ACATTATC-AAAA-GG-CTGTTTCGTTTAGGC--AAAATATCGCTACTTTCCAAAAGGATGT--TTTGT-A-TAGTTAACGGACAGTCACAAGATAT---ACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATGATAACTCCAT-TC------TGT-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTTG-TTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAAT-CT-A--AT--A-TAATT-GCCAAAGAGAATTTACA---T------AGTTTT-ATAAGGT-----ATTT---TCC-----AT-CAGT--ATAGGG----------A--ATT-TAAT--TGTGTA-CAATATCGTATT--ACA---GTGCATC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTT-TTCTGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGA---ACTC-AA-TTATTTTACC-TTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATA----------------TATCAA---AA---ATG-TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTGA-CTGTAGACAAGATAGGGAATCTGA-AAATATGGT-AAA------ATGTTT-ATCA-----TTGGAA-AA---T-TAA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T-TTG-------TAG-------GA--------A-------A---------ATAGCC----GTTT-CTATCGAGCTGTATAA-A-TTGTTTGCCT--CGT-TTTGGAAGTCTTGTAGAG--ACAACATC--GTGC----T--TACTG--AGTGGTACGC-ACTTTG---TTTTGGTCTTTTGA-------TCCATCT-GTGTAAA-TAC---C--AATCGT-AGA-ATGT---TTGG-CC-TGT-TTTATTTCGAAGAAA--TTTT---GTTT------AAA--AACGGCGGGA-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCACA-----GGTGT-GTC-TACCT---T----AGGTTT----T-ATTA-ATT------T-C-CATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATAT-TCA-----AA---------------GGTA--AGTCA--GAA--TCC-TGTA-------------TGTG---CG---TTTT------AACTCGT---------AAACCAATTGAT-TGA----ATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA----TTGC------AAAAG-GA--GTTTTA--TTCTACGTAGGT-CTAGAGGTGGTTCGTTTGCCTCAAC-TACT
gi|6 : TCAATCTTAGCA-AAAAGCTC-TTTT-TTGTTTTTTACATTATC-AAAAAGG-CCTTTTCGTGTAGGC--GAAAAATCGCTATATTCCAAAAGGACGT--GTTGT-A-TTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATAATAACTTCAT-CCTACAATTGG-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCAG-TTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCCC-A--AT--A-C-ATT-GCGGAAGAGAATTTACA---TAC----AATTTT-ATAAGGT-----ATTT---
gi|12 : TCTATGTTTGTACAAAAGTTC-TTCCATTGCTTGC-ACAATATT-AAAA-TGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGT-A--AATTCATGGACAATaat
gi|5 : gCAATATTTGTG-AAACGTTC-TTGCATTGATTGC-ACATTATT-AAAG-GG-CTG-------TAG----------------------AAAAGAAAGT--GGTGT-AACAAT-AACAGAGAGTCAAAACATGT---ACATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATAATAACTTTTT-CC------TGA-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAAT-CCAA--AT--A-GATTT-GCTACAGAGTATTTA-ACTTT------AGCGTT-ATGAAAT-----ATTT---TAG-----AT-CAGT--GTATGG----------A--ATT-TTAA--AGTGTA-CAATATCATATG--AAA---GTGCAT
gi|13 : aaatcacgtccttgtaaaaattaggtttgcATTCTAGTA-A-AAGCTCTCTTCATTGTTTTTAACATCACCAAAAA-GG-CTGTTT-GTGAAGG---AAAATAATGCTAC-ATCCAAAAGAATGT--GTTGTAA-TAGTTAA-GGACAGtaataccagaatgacttggaatcaaagcggaactcaactat
gi|8 : gatcAGAATGTGTCAATTTAGTTGACC-AATACGTAATT------------CTCC---TCA-----GGG-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAAT-CC-ACCATCTA-TATTT-GCCAA-GAGAATTTACA---T------A--------AA----------TT---TCC-----A----------AAGG--------------TT-TTAT--AGTGTA-AAATATCGTATT--GAA---GTGCTTC-TTTT-----------------GG---------CGCTCT-GTCTGCTTTGGTGTTGCCATG---TATA-CC-A--ATGCGACTTGGAACC-CAGCAGA---AC
gi|4 : GAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGAATAACTTCAT-CC------TGTTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTTG-TTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAAT-CTCA--AT--A-TAATTTGACAAAGA--ATTTACAATAC------AGTTTT-GTAAGGT-----ATTT---TAC-----AT-CAGT--ATTGGA----------A--ATT-TTAT--AGTGTAGCAATATCGTATT--GAA---GTGCATC-TTT-----------------------TGC---CGCTTT-GTCTGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGA---ACTC-AA-TTATTTTACA-TTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATATACAATTATAAACATGTATCTA---AA---ATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTGAGCTGTAGACAAGATAGAGAGTCTGA-AAATATGGTAAAA------ATGTTTGGTCA-----TTGGAA-AAT--T-TAA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCTG-TATAAAT-TGT-----TG-CC--TCGTTTGGAAG-TCTTG-------TAG-------AG--------A-------A---------ac
gi|3 : ATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAATAGATAACTTCATACC------TGTTCGTTTGAGTATGACGTT--ACTCG-TTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAAT-CTCA--AT--AATATTT-GACAAAGA-AATTTACAATAC------AGTTTTGATAAGGT-----ATTT---TAC-----AT-CAGT--ATTGTG----------ACAATT-TTAT--AGTGTAGCAATATCGTATT--GAA---GTGCA--------A----------ATCTT----TTGC---CGCTTTGTTCTGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTT-GAATC-CAGCAGA---ACTC-AATTTATTTTACA-TTGTTTTACTTATG-ACGAATAGTGCT-GTTTAATA----------------TA--AATATAATCGATG-TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-TT-TGGA-CTGTAGACAAGATAGAGAGTCTGAGAAATATGGTAAAA------ATGTTT-TGCA-----TTGGAA-AT---T-TAA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCTG-TATAAGATTGG-----TT-GCTGTCT-TTGGAAG-TCTTG-------TAG-------AG--------G-------A---------ACAcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|7 : CCAATTTGGAATGACCGATTTGTGATCTTGAGATATTCACATCTT-CC------TGG-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTAG-TTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAAT-C------------------CCAA---------------T------AAATTT-ATGAAAT-----ATCT---TAG-----AT-CTGC--AGGGGT----------A--ATT-TTAA--AGTGTA-CAATATCATATG--GAAATTGTGCATC-TTTTGCCTCTTT----GTGTTGGTA----------------------TGG-ATTGCCATGATAGATATCC-ATGATGTTACTTGAAACG-CAGCAGA---AATT-AA-CTATTTCACC-TTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTA----------------TAcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|18 : aagtcGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCCC-A--AT--A-TA
gi|2 : TGTCGCA--GGAAT-CCCA--AT--A-CGGTT-----AAAATAATTTACA---TTGCGAAAGTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCATACGGCGGATCACCTG--ATTCTGATGGTGTATA-CAATGTCGTATTTGA-A---ATAAGTCGTTTTG-CGCCGCTTC-------GTA-----AT-----------GCTTTACTGTTGCCATG---TTGA-CCAA--ATGTGACTTGG-ATC-CTGCAGA---AATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------A----------------TCTCTA---AAGTTATG-TA---------TGATATGTCCGATGTTTATGTTGCTTTATTGAGCT--------GAT----------A-AAATATGGT-AAAATTTGCATATTT-AACATACATTTGGGATAACTTT-CAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TTGAAAT-T-TTG-------TAG-------AG--------T-------A---------AT-GCC----ACTT-
gi|14 : tgGTATTTTTGCTGTTCT-GTTCGATTTGTTACTGTCATG---GATA-CA-A--ATATGACTTG--ATC---GAAGA---ACaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|9 : agagattttatagtgtaaatattataagtattatactgaagtGCATT-GTCTGTTTTGGTGTTA--ATGCA-AATA-CC-A--ATATCGCTTGAAATA-CAACATATTGATTG-AA-TTA------C-TTG-TTTAT------AAG-A-ACTATTGATTGAGGA----------------TGTCTA---AA---ATG-TA---------TGG-GTGATTTAAATTCATATT
gi|16 : TTGCCATG---GATA-TC-C--ATATGACTTGAAACC-CAGCATA---ACTC-AA-CTAATTTACA-TTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTA----------------TAttgaaagtttagtgaacaggacagacagttataaaaagagataattaaagttaatttctagaa
gi|5 : aCATT---AATA-CC-A--GAATGACTTGGAATCAAAGCGGA---ACTC-AA-CTAT
gi|10 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtg-AAA------ATGCTT-GTCA-----TTAGAA-AT---TGTAG-TATA-CTTGAAA-GCAAGTTGAA-TAG-CCT-TTG---CTTCGGCTG-TATAAAT-TGT-----TG-CC--TCGTTTGGAAG-TCTTG-------TAG-------GG--------A-------A---------
gi|4 : ctgaTGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT-TTAATATACTTAA-------AA--------GCGAGTTGA---------ATAGCC-----TTT-GTTTC-AGCTGTATAA-A-TTGTT-GCCT--CGT-TT-GGAAGTCTTGTAGAG--AACACATC--GTGTGCTAT--TACTGC-AGCGGCA-GCGACATTAAA-TTTTGGTCTTTTGA-------T-CATCT-GTATAAA-TAT---CTAAATCGT-AGA-ATGT---TTTA-CC-TGT-TTT-TTTCGAAGAAT--TTTT---GTTT------GAA--AAGAACGGGATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAGAAAGT-GATGT-GGC-T-CCT---TTA--AGGTTTTA--T-ATTA-CTT------T-CGCATGACGGTATTTC-AGAACACG--TTGAGcacatgtgctattactgcagcgactttatttaggtgtttcgatccctctgtataaatatcaatcgtaggatgcttgtcctgattc
gi|3 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataTGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T-TTAATATACTTAA-------AAGCGAGTTGA-------A---------TTAGCCTATTGTTT-C-----AGCTGTATAAGA-TTGGTTGCT----GTCTTTGGAAGTCTTGTAGAGGAAC-ACATCGTGTGC----TA-TACTAGCAGCGGGCAGCGACATTAAATTTTTGGTCTTTTGA-------ATCATATCGTATAAA-TTT---CA-AATCGT-AGA-ATGT---TTTA-CCTTGT-TTTTATTCGGAAGAA--TTTTATAGTTT------GAA--AA-GACGGGA-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAGAAAGT-GATGTGGTC-TCTCTTTAT----AGGTTT----TAATTACATT------TGC-CATGACGGTATTTCAAGAACACG--TTtagaaacaaacc
gi|10 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataAAA--TGC-----TT-G---TCA-TTAGAAA-T-T-G-------TAGTATACTTGA--------A-------AGCAAGTTGAATAGCC----TTTG-CT-TCG-GCTGTATAA-A-TTGTT-GCCT--CGT-TT-GGAAGTCTTGTAGGG--AACACAT---GTGC----TATTACTGC-AGCG-------ACTTTA---TTTAGGTGTTTCGA-------TCCCTCT-GTATAAA-TAT---C--AATCGT-AGG-ATGC---TTGT-CC-TGA-TTtga
gi|2 : ctgaaAGTC----TTTTGCT-TCGGCTTGCATAA-ACTTGTTGTCATTGCGT-TATTGAAATTTTGTAGAG---TAA-------TGC----C---ACT-----TAATACG------TG---T----GTCTATTGAATCAGCATCAATCT-GTATAAAGTATGTTT--AATCTTTAGACATTTAGATTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCATATTT---TACAAAAGTTTGTAAT-AGTAGATTTCTCTCT-C-TAT-GTGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTA-------------TATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAA-TAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TG-AGTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTG----CTGT------AAAAGAGATTGTTTTATTTTTTACGTc
gi|11 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagTGAGGGTTTG--ACAATGT-CCA-----AA---------------GGTA--AGTTA--AAA--TTA-TGTAAAGGCCAATATTATGTG---TA---TTTTTTCCAAAACTTGT---------TGAGCAATTGAT-CCT----ATA--------------G---ATGA--CTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTTtcgtttgctcttagagcattttctaaaactacttt
gi|15 : TA--TTGGC--TTACA--TTTAAAAATATACTTTTTGCCATATAAAAAG-GA--GTTTTA--TTCTGTGTCGATGCTAGA-GTGGGTTGTTTGTCTCAACATAC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 2 44444444444 111 222 22 22222222222222 333 33333333333 11 11111 222222222222 222222222222222 11 1111 11111 6666666666666666666666666666 111 111 1111111 2222 55555555555555555555555 1111 11 11 22222 111 22222 2222 11 1 11 2 11 1 1 111 1 22 11111 1111111 666666666666666666666666666666666666 1 11 1 222222222 2222222 111111 1111 222 11 111 22222 33 1111111 11 1 11 111 1 1 1 1 55555555555555 333333 2 22222222 1 1 11 11111 22 4444444444444 222222 44444444444444444444444 6666666666666666666666666666666666 1 1111111 1 1111 11 1 66666666666666 33333 111 1 2 1
lowQualScore : 1 1 8 5 8 0 888 8 4 0 5 11111111111 1 5 4 1 888 0 3 1 1 666 0 0 44 11 1 1 0 1 3 11 5 5 5 11111111111111 3 2 77 5 77 111 777 1 0 0 66 66 4 4 2 7 8888 0 8 5 11111111111 00 22222 555555555555 0 77 0 111111111111111 5 66 0000 77777 888 66 5 5555555555555555555555555555 5 777 222 4 4 55 4 5 5 5 6 5 4 888 000 5 7 4 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 3 55555 555 55555 1111 33 0 22 3 3 33 0 0 777 0 11 44444 5 6666666 5 777777777777777777777777777777777777 1 6 8 88 8 8 6 99 8 0 0 8 1 5 444444444 8 0 3333333 99 99 999 5 5 8 8 888888 8 8 8 7777 1 8 8 111 33 777 11111 33 9999999 33 0 33 111 0 0 0 3 0 66666666666666 666666 0 99999999 0 7 0 3 33 1 33333 11 1 9999999999999 999999 4 11111111111111111111111 1 7 2222222222222222222222222222222222 1 1 3 6666666 1 0 2 1 1 7777 33 4 0 22 0 88888888888888 55555 333 0 2 5 0 2 5
lowQualScore : . . . . . . ... . . . . ........... . . . . ... . . . . ... . . .. .. . . . . . .. . . . .............. . . .. . .. ... ... . . . .. .. . . . . .... . . . ........... .. ..... ............ . .. . ............... . .. .... ..... ... .. . ............................ . ... ... . . .. . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . . ..... ... ..... .... .. . .. . . .. . . ... . .. ..... . ....... . .................................... . . . .. . . . .. . . . . . . ......... . . ....... .. .. ... . . . . ...... . . . .... . . . ... .. ... ..... .. ....... .. . .. ... . . . . . .............. ...... . ........ . . . . .. . ..... .. . ............. ...... . ....................... . . .................................. . . . ....... . . . . . .... .. . . .. . .............. ..... ... . . . . . .
lowQualScore : 0 0 0 6 0 8 666 0 0 8 0 00000000000 0 6 6 0 000 8 2 0 0 000 7 7 77 77 0 4 4 4 0 77 7 4 7 99999999999999 0 7 99 7 99 444 000 1 4 1 11 11 4 4 4 6 2222 1 8 0 00000000000 00 55555 666666666666 7 99 7 000000000000000 0 99 6666 55555 888 99 7 0000000000000000000000000000 0 111 555 0 0 55 0 0 0 7 6 7 3 666 444 3 9 0 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 2 00000 222 00000 0000 88 0 55 0 2 22 0 0 555 8 44 33333 7 6666666 7 000000000000000000000000000000000000 0 7 0 88 0 0 0 00 0 6 8 0 0 0 888888888 0 8 6666666 44 44 888 0 0 0 0 222222 0 0 0 0000 0 0 0 000 88 555 55555 88 5555555 88 0 88 000 0 0 0 2 0 88888888888888 000000 0 88888888 0 0 0 2 88 0 77777 55 0 5555555555555 000000 0 55555555555555555555555 0 3 0000000000000000000000000000000000 0 0 3 3333333 0 7 0 0 0 8888 88 0 7 00 7 33333333333333 33333 777 7 5 0 0 5 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCG-AAAATA-CGCTACATTCCAAAAGAATGTGTTGTAAT-AGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTG--------CC-------G---------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AACTT--AA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAATAGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AACACATCGTGTGCTA--TTACT-GCAGCGGT-AGCG-AC-ATTAAATTTT-GGTCTTTTGATCCATCT-GTATAAA-TAT---C--AA-TCGT-AGA-AT----GTTTNACC-TGT-TTTAT-TTCGAAGGAA--TTTT---GTTT---G-AAAAC-GACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTCT-CCT---TT-----AGGTTT----T-ATTA-ATT------T-C-CATGACGGTATTTC-AGAACACG--TTGAGCGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAATTGAT-CGA---TATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATG-GAAGACGC-GTCAAATGCAGGNTTGTCAGC-G--TTAGC--TTTC-GATTTAANTATATACT-TTTGC-----AAAAAGAGA--GTTTTATTTTCTACGTNGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTNGTA-AAAAGCTCT-TTCATTGTTTNC-A-CATTATCAAAA-GGCTGTTTCGTGTAGGC--AAAATA-CGCTACATTCCAAAAGAACGTGNTGTA-T-AGTTAACGGACAGTCANAANATGTGATACATTCGGGCTNTAAGNTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-G-CGTTTCAGTATGACGTT--ACTCGGTTTG-TTT--ACTT--GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTG--------CCT---TTGGTATC-----CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAGTAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-GNCA-----TTGGAA-ANCTT--AA-TATA-CTTGAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------AAATAGCCNTTT-CT-TCGAGCTGTATAA-A-TTG-TTGCC--T-CGTTTTGGAAGTCTTGTAGAG-ANCACATCGTG--CTA--T-ACT-GCAGCGGN-AGCG-AC-ATTAAATTTT-GGTCTTTTGATCCATCT-GTATAAA-TAT---C--AA-TCGT-AGA-AT----GTTTNACC-TGT-TTT-T-TTCGAAAGAA--TTTT---GTTT---G-AAAA--AACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTCT-TCT---T------AGGTTT----T-ATTA-ATT------T-C-CATGACGGTATTTC-AGAACACG--TTGAGNGTTTNAAACAATGTCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCNGCGTAAAGGCCAATATTATGTGAGTCGATTTTTTTTCCAAANCTCGTCTTTCTTTANGANCAATTGATACGNTATTATACATTTCTTTATTTTGCTCATGNAACTTCNAACTGCGGNTG-GAAAACGCNGNCAGATGCAGGNTTGTCANC-G--TTAGC--TTTCNGACTTAANNATGTGCTTTCTGCCATATAAAAAGAGATTGTTTTATTTTCTGCGTCGATGCTAGA-GTGGGTTGTTTGTCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTGTTTTT-A-CATTATCAAAA-GGCTGTTTCGTTTAGGC--AAAATATCGCTACTTTCCAAAAGGATGTTTTGTA-T-AGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---G-T-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAATCT---A-AT-ATAATT-GCCAAAGAGAATTT-ACAT-------A--GTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GG--A-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGC--ATC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTTT-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGT-AAA-----ATGTTT-ATCA-----TTGGAA-AA-TT--AA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T----------T--TGTA---------GGA------AAATAGCCGTTT-CTATCGAGCTGTATAA-A-TTGTTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-ACAACATCGTG--CT---T-ACT-G-AGTGGT-A-CGCAC-TTT--GTTTT-GGTCTTTTGATCCATCT-GTGTAAA-TAC---C--AA-TCGT-AGA-AT----GTTTGGCC-TGT-TTTAT-TTCGAAGAAA--TTTT---GTTT---A-AAAAC-GGCGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAC-A----GGTGT-GTCTACCT---T------AGGTTT----T-ATTA-ATT------T-C-CATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAATTGAT-TGA----ATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATG-GAAGACGCAGTCAAATACAGGGTTGTCAGT-G--TTAGC--TTTTAGTTTTAAGTATATA----TTGC-----AAAAGGA----GTTTTA--TTCTACGTAGGT-CTAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TT-G---TCA-TTAGAAA-TTGTAGTATACT--TG-A---------AAGCAAGTTGAATAGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TTGCC--T-CGTTT-GGAAGTCTTGTAGGG-AACACAT-GTG--CTA--TTACT-GCAGCG--------AC-TTTA--TTTA-GGTGTTTCGATCCCTCT-GTATAAA-TAT---C--AA-TCGT-AGG-AT----GCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAATTGATCC-----TATA--------------G---ATG--ACTTCAAATTGCGATTG-GAAAACACTGACAAATGCAGGATTATCAGC-G--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTGCTTGC-A-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTG-TAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTGTTTTT-AACATCACCAAAAAGGCTGTTT-GTGAAGG---AAAATAATGCTACAT-CCAAAAGAATGTGTTGTAAT-AGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGT--AT--TTTTG--------CT------------------GTTCTG-T-T-CGATTTGTTACTGTCATG---GATA-CA-A--ATATGACTTG--ATC---GAAGAAC
gi|15 : agagGCCAACTA--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAG-GA--GTTTTATT--CTGTGTCGATGCTAGA-GTGGGTTGTTTGTCTCAACATAC
gi|16 : TTGCCATG---GATA-TC-C--ATATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-AT-ATA
gi|2 : TGTGTCGCA--GGAATCC--CA-AT-ACGGTT-----AAAATAATTT-ACAT-TGCGAAA--GTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGG--ATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAA--GTCGTTTTG--------C--------G---C-----CGCTTCG-T-AATGCTTTACTGTTGCCATG---TTGA-CCAA--ATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TT-GAAA-T---------TT--TGTA---------GAG------TAAT-GCCACTT-
gi|2 : AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TTGTCATTGCGTTATTGAAATTTTGT--AG-AGTA----ATG--CCACTT-AAT-AC----GT--GTG-TCTATTGAATC---AGC------ATCAATCT-GTATAAAGTATGTTT--AA-TCTTTAGACATTTAGATTGAACC-TGTATTTAT-TTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCA-TAT---TTTACAAAAGTTTGTAAT-AGTAGATTTCTCTCT-C-TATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAA-TAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATGTGA-------GTTAGAT----GTTTGTCATT-GATTTAGCATTTTCTGACTTAACTATGTGCTGT----------AAAAGAGATTGTTTTATTTTTTACGTaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagATGTGTAAATTTAGCATGGCCAATACGTAATCGTG-AATAGATAACTTCATACC------T---GTT-CGTTTGAGTATGACGTT--ACTC-GTTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTT-ACAA-TAC---A--GTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTG---------------------C-----CGCTTTGTT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGGAA-AT-TT--AA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TT-GCTGTCT-TTGGAAG-T---------CT--TGTA---------GAG------GAACAtcgtttgctcttagagcattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T---------TTAATATACTTAAAAGCGAGTTG---AATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTTGCTG-T-C--TTTGGAAGTCTTGTAGAGGAACACATCGTGTGCTA--T-ACTAGCAGCGGGCAGCG-AC-ATTAAATTTTTGGTCTTTTGAATCATATCGTATAAA-TTT---C--AAATCGT-AGA-AT----GTTTTACCTTGT-TTT-TATTCGGAAGAA--TTTTATAGTTT---G-AAAA--GACGGG---A-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAG-AAAGTGATGTGGTCTCTCTTTAT------AGGTTT----TAATTACATT------TGC-CATGACGGTATTTCAAGAACACG--TTcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---G-TTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTT-GTTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-AT-ATAATTTGACAAAGA--ATTT-ACAA-T-----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GA--A-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGC--ATC-TTTTG--------CC------------------GCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AATTT--AA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAAT-TGT-----TG-CC--TCGTTTGGAAG-T---------CT--TGTA---------GAG------AAtga
gi|4 : TGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT---------TTAATATACTTAAAAGCGAGTT----GAATAGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TTGCC--T-CGTTT-GGAAGTCTTGTAGAG-AACACATCGTGTGCTA--TTACT-GCAGCGGC-AGCG-AC-ATTAAATTTT-GGTCTTTTGATC-ATCT-GTATAAA-TAT---CTAAA-TCGT-AGA-AT----GTTTTACC-TGT-TTT-T-TTCGAAGAAT--TTTT---GTTT---G-AAAAG-AACGGG---ATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GGCT-CCT---TTA----AGGTTTTA--T-ATTA-CTT------T-CGCATGACGGTATTTC-AGAACACG--TTGAGTA---GAAACAAcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTGATTGC-A-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAAC-AAT-AACAGAGAGTCAAAACATGT---ACATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---G-A-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-AT-AGATTT-GCTACAGAGTATTTAACTT-T-----A--GCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GG--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGC--ATacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCATT---AATA-CC-A--GAATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAAAAAT--CGCTATATTCCAAAAGGACGTGTTGTA-T-TGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---G-G-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCA-GTTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-AT-ACA-TT-GCGGAAGAGAATTT-ACATAC-----A--ATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---G-G-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTA-GTTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-AT-A---------------AATTT-A--------------------TGAAAT-----ATCT------------TAGA--TCTGCAGGG-GT--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGC--ATC-TTTTG--------CCT------------------CTTTG-TGT-TGGTATGG-ATTGCCATGATAGATATCC-ATGATGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGG-G-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCT-ATATTT-GCCAA-GAGAATTT-ACAT-A-----A--ATTTC-CAAAGGT---------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGC--TTC-TTTTG-----------------G---------CGCTCTG-T-C-TGCTTTGGTGTTGCCATG---TATA-CC-A--ATGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTG-T-C-TGTTTTGGTGTTA--ATGCA-AATA-CC-A--ATATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1 33333333333 222 1 1111111111111 111 33333333333 11 11111 222222222222 2222222 11 1111 11111 666666666666666666666666666 111 111 111 1111111 2222 55555555555555555555555 1111 11 11 222222 111 22222 1 1 11 1 11 1 11 1 1 111 1 22 11111 1111111 66666666666666666666666666666666666 11 1 1 2222 11 111111 1111 11 2222222 1 11111111 111 11 1 11 111 1 1 1 111 1 333333 333333 2 22222222 1 1 11 11 1 4444444444444 222222 44444444444444444444444 2222 66666666666666666666666666666666 2 1 11 11 33 5555555555555 222 33 22222222 1 1
lowQualScore : 1 1 8 5 8 0 8 0 8 5 0 5 55555555555 1 5 1 99 0 3 444 7 0 3 1 1 0 1 3 11 5 5 5 9999999999999 1 2 77 4 5 77 111 777 1 0 0 66 66 4 9999 8888 0 8 5 11111111111 00 22222 555555555555 0 77 0 555 3333333 5 66 0000 77777 888 66 5 0 444444444444444444444444444 222 222 4 4 55 4 5 5 5 6 5 4 888 000 5 7 2 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 888888 222 55555 7 0 0 33 0 22 5 3 33 0 0 777 0 11 44444 5 6666666 5 33333333333333333333333333333333333 5 88 8 88 8 8 8 8 99 8 0 6 5 555 8 0 8 0 3333 5 99 11 999 5 3 8 8 888888 8 8 8 7777 1 8 8 9 33 5555555 0 99999999 111 33 0 33 111 0 0 0 3 777 0 2 222222 666666 0 99999999 0 7 0 3 33 2 88 5 9999999999999 999999 1 11111111111111111111111 1 8888 11111111111111111111111111111111 8888 6 2 1 0 33 33 33 1 4444444444444 7 555 00 1 99999999 5 1 5
lowQualScore : . . . . . . . . . . . . ........... . . . .. . . ... . . . . . . . . .. . . . ............. . . .. . . .. ... ... . . . .. .. . .... .... . . . ........... .. ..... ............ . .. . ... ....... . .. .... ..... ... .. . . ........................... ... ... . . .. . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . ...... ... ..... . . . .. . .. . . .. . . ... . .. ..... . ....... . ................................... . .. . .. . . . . .. . . . . ... . . . . .... . .. .. ... . . . . ...... . . . .... . . . . .. ....... . ........ ... .. . .. ... . . . . ... . . ...... ...... . ........ . . . . .. . .. . ............. ...... . ....................... . .... ................................ .... . . . . .. .. .. . ............. . ... .. . ........ . . .
lowQualScore : 0 4 0 6 0 8 0 6 0 8 8 0 44444444444 0 6 0 88 8 2 333 3 7 3 0 4 4 4 0 77 7 4 7 9999999999999 0 7 99 3 7 99 777 000 1 4 1 11 11 4 8888 2222 1 8 0 00000000000 00 55555 666666666666 7 99 7 999 1111111 0 99 6666 55555 888 99 7 7 888888888888888888888888888 111 555 0 0 55 0 0 0 7 6 7 3 666 444 3 9 1 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 222222 222 00000 0 0 5 88 0 55 5 2 22 0 0 555 8 44 33333 7 6666666 7 77777777777777777777777777777777777 7 66 0 88 0 0 0 0 00 0 6 0 0 666 0 8 0 8 4444 0 44 22 888 0 2 0 0 222222 0 0 0 0000 0 0 0 8 88 0000000 0 00000000 000 88 0 88 000 0 0 0 2 555 0 5 222222 000000 0 88888888 0 0 0 2 88 5 55 5 5555555555555 000000 0 55555555555555555555555 0 3333 00000000000000000000000000000000 3333 7 0 0 7 88 88 33 0 3333333333333 3 777 77 0 33333333 0 0 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTG-TTTTTA-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---GN-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTTG-TTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-ATA-TANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GGA-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGCA--TC-TTTTGCCG------------------------CGCTTTGT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AATTT--AA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AACACATCGTGTGCTA-TTACT-GCAGCGG-CA-GCGAC-ATTAAATTTT-GGTCTTTTGATCCATCT-GTATAAA-TAT---C--AA-TCGT-AGA-AT----GTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---G---TTTG-AAAA-CGAC---GGGA-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCA-GAAAGTGATGTG---TC-TNCTT-TA---AGGTTT----T-ATTA-ATT------T-C-CATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATC-A-TATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACT-TT-GC-----AAAAAGAGA--GTTTTATT--CTACGTCGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTG-TTTTTA-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---GN-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTTG-TTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-ATA-TANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GGA-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGCA--TC-TTTTGCCG------------------------CGCTTTGT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AACTT--AA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AACACATCGTGTGCTA-TTACT-GCAGCGG-TA-GCGAC-ATTAAATTTT-GGTCTTTTGATCCATCT-GTATAAA-TAT---C--AA-TCGT-AGA-AT----GTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---G---TTTG-AAAA-CGAC---GGGA-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCA-GAAAGTGATGTG---TC-TCCTT-T----AGGTTT----T-ATTA-ATT------T-C-CATGACGGTATTTC-AGAACACG--TTGAGCGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATCGA-TATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTTT-GC-----AAAAAGAGA--GTTTTATTTTCTACGTNGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTG-TTTTTA-CATTATCAAAA-GGCTGTTTCGTTTAGGC-AA-AATATCGCTACTTTCCAAAAGGATGTTTTGTA-TAGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---GT-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTTG-TTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAATCT---A-ATA-TAATT-GCCAAAGAGAATTT-ACAT-------A--GTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GGA-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGCA--TC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTTTT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGTAAAA------TGTTT-ATCA-----TTGGAA-AA-TT--AA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T----------T--TGTA---------GGA------AAAT-AGCCGTTT-CTATCGAGCTGTATAA-A-TTG-TTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-ACAACATCGTGC-----TTACT-G-AGTGG-TACGC-AC-TTTG--TTTT-GGTCTTTTGATCCATCT-GTGTAAA-TAC---C--AA-TCGT-AGA-AT----GTTTGGCC-TGT-TTTATTTCGAAGAAA--TTTT---G---TTTA-AAAA-CGGC---GGGA-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCA-CA----GGTGTG---TC-TACCT-T----AGGTTT----T-ATTA-ATT------T-C-CATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAAT----TGATTGA--ATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA---TT-GC-----AAAAGGAG----TTTTATT--CTACGTAGG--T-C---TAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TT-G---TCA-TTAGAAA-TTGTAGTATACT--TG-A---------AAGCAAGTTGAAT-AGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGGG-AACACAT---GTGCTA-TTACT-GCAGCG--------AC-TTTA--TTTA-GGTGTTTCGATCCCTCT-GTATAAA-TAT---C--AA-TCGT-AGG-AT----GCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAAT----TGATC-C-TATAGA-----------TG--------ACTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTG-CTTGCA-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGTAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTG-TTTTTAACATCACCAAAAAGGCTGTTT-GTGAAGG--AA-AATAATGCTACAT-CCAAAAGAATGTGTTGTAATAGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGTA--T--TTTTGCTG------------------------T--TCTGT-T-CGATTTGTTACTGTCATG---GATA-CA-A--ATATGACTTG--ATC---GAAGAAC
gi|15 : agag--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAG-GA--GTTTTATT--CTGTGTCGA--TGC---TAGAG-TGGGTTGTTTGTCTCAACATAC
gi|16 : gccaactaTTGCCATG---GATA-TC-C--ATATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-ATA-TA
gi|2 : TGTGTCGCA--GGAATCC--CA-ATA-CGGTT-----AAAATAATTT-ACAT-TGCGAAA--GTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGGATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAAG--TCGTTTTGCGC------------------------CGCTTCGT-AATGCTTTACTGTTGCCATG---TTGA-CCAA--ATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TT-GAAA-T---------TT--TGTA---------GAG------TAAT--GCC
gi|2 : -AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TT-GTCATTGCGTTATTGAAATTTTGTAGAGTAA---------TGCCACTTAAT-AC----G-T--GTGTCTATTGAATC---AGC------ATCAATCT-GTATAAAGTATGTTT--AA-TCTTTAGACATTTAGATTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGTG---TCATATTT-TACAAAAGTTTGTAAT-AGTAGATTTCTCTCT-C-TATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAATAATATGAT--ATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TGA-GTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTGCTGT----------AAAAGAGATTGTTTTATTTTTTACGTTCGTTTGCTCTTAGAGacttaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAA-TAGATAACTTCATACC------T---GTTCGTTTGAGTATGACGTT--ACTCG-TTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTT-ACAA-T-----ACAGTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-----ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTGCCG------------------------C--TTTGTTC-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGG-A-AATTT--AA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TT-GCTGTCT-TTGGAAG-T---------CT--TGTA---------GAG------GAAC-Acattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T---------TTAATATACTTAAAAGCGAGTT----GAATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTT-GCTG-T-C--TTTGGAAGTCTTGTAGAGGAACACATCGTGTGCTA-T-ACTAGCAGCGGGCA-GCGAC-ATTAAATTTTTGGTCTTTTGAATCATATCGTATAAA-TTT---C--AAATCGT-AGA-AT----GTTTTACCTTGT-TTTTATTCGGAAGAA--TTTTATAG---TTTG-AAAA--GAC---GGGA-TATTGCGTG-TCA--GATT-TTCT-TATATTTCA-GAAAGTGATGTGGTCTC-TCTTTAT----AGGTTT----TAATTACATT------TGC-CATGACGGTATTTCAAGAACACG--TTcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---GTTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTTG-TTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATA-TAATTTGACAAAGA--ATTT-ACAA-T-----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GAA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCA--TC-TTTTGCCG------------------------C--TTTGT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AATTT--AA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAAT-TGT-----TG-CC--TCGTTTGGAAG-T---------CT--TGTA---------GAG------AAtga
gi|4 : TGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT---------TTAATATACTTAAAAGCGAGTT----GAAT-AGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGAG-AACACATCGTGTGCTA-TTACT-GCAGCGG-CA-GCGAC-ATTAAATTTT-GGTCTTTTGAT-CATCT-GTATAAA-TAT---CTAAA-TCGT-AGA-AT----GTTTTACC-TGT-TTT-TTTCGAAGAAT--TTTT---G---TTTG-AAAA-GAAC---GGGATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCA-GAAAGTGATGTG---GC-TCCTT-TA---AGGTTTTA--T-ATTA-CTT------T-CGCATGACGGTATTTC-AGAACACG--TTGAGcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTG-ATTGCA-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAACAAT-AACAGAGAGTCAAAACATGT-A--CATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---GA-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-ATA-GATTT-GCTACAGAGTATTTAACTT-T-----A--GCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GGA-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGCA--Ttagaaacaaacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCATT---AATA-CC-A--GAATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAA-AAAT-CGCTATATTCCAAAAGGACGTGTTGT-ATTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---GG-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCAG-TTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-ATA-CA-TT-GCGGAAGAGAATTT-ACATAC-----A--ATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---GG-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTAG-TTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-ATA----------------AATTT-A--------------------TGAAAT-----ATCT------------TAGA--TCTGCAGGG-GTA-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGCA--TC-TTTTGCCT------------------------C--TTTGTGT-TGGTATGG-ATTGCCATGATAGATATCC-ATGATGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGGG-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCTA-TATTT-GCCAA-GAGAATTT-ACAT-A-----A--ATTTC-CAAAGGT-------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGCT--TC-TTTTG--G------------------------CGCTCTGT-C-TGCTTTGGTGTTGCCATG---TATA-CC-A--ATGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTGT-C-TGTTTTGGTGTTA--ATGCA-AATA-CC-A--ATATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1 33333333333 222 1 11111111111111 11 33333333333 11 11111 222222222222 222222222222222 11 1111 11111 66666666666666666666666666666 111 111 1111111 2222 55555555555555555555555 1111 11 11 222222 111 22222 1 11 1 11 1 11 1 1 111 1 22 11111 1111111 66666666666666666666666666666666666 11 1 111111 111 1111 111 111 111 11 111 22222 11 1111111 11 1 11 111 1 1 1 1 1111 3333 333333 2 1 33333333 1 11 11 1 4444444444444 222222 44444444444444444444444 2222 11 5555555555555555555555 2 1 11 11 33 555555555 111 11 11 1 1 1
lowQualScore : 1 1 8 5 8 0 8 0 8 5 0 5 55555555555 1 5 1 99 0 3 444 7 0 3 1 1 0 1 3 11 5 5 5 99999999999999 1 2 77 5 77 44 777 1 0 0 66 66 4 4 2 7 8888 0 8 5 11111111111 00 22222 555555555555 0 77 0 111111111111111 5 66 0000 77777 888 66 5 44444444444444444444444444444 5 777 222 4 55 4 4 5 5 5 6 5 4 888 000 5 7 2 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 888888 222 55555 7 0 33 7 0 22 5 3 33 0 0 777 0 11 44444 5 6666666 5 33333333333333333333333333333333333 5 88 8 88 8 8 8 8 99 8 0 666666 444 8 8 11 8 5 8 1111 6 444 999 333 8 999 0 1 8 8 9 33 777 11111 88 9999999 33 0 33 111 0 0 0 3 0 2222 0000 666666 0 0 22222222 7 0 3 33 1 88 5 9999999999999 999999 1 11111111111111111111111 1 8888 66 2222222222222222222222 8888 6 2 1 0 33 33 33 1 6 666666666 888 88 88 2 5 5 1 5
lowQualScore : . . . . . . . . . . . . ........... . . . .. . . ... . . . . . . . . .. . . . .............. . . .. . .. .. ... . . . .. .. . . . . .... . . . ........... .. ..... ............ . .. . ............... . .. .... ..... ... .. . ............................. . ... ... . .. . . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . ...... ... ..... . . .. . . .. . . .. . . ... . .. ..... . ....... . ................................... . .. . .. . . . . .. . . ...... ... . . .. . . . .... . ... ... ... . ... . . . . . .. ... ..... .. ....... .. . .. ... . . . . . .... .... ...... . . ........ . . . .. . .. . ............. ...... . ....................... . .... .. ...................... .... . . . . .. .. .. . . ......... ... .. .. . . . . .
lowQualScore : 0 4 0 6 0 8 0 6 0 8 8 0 44444444444 0 6 0 88 8 2 333 3 7 3 0 4 4 4 0 77 7 4 7 99999999999999 0 7 99 7 99 66 000 1 4 1 11 11 4 4 4 6 2222 1 8 0 00000000000 00 55555 666666666666 7 99 7 000000000000000 0 99 6666 55555 888 99 7 00000000000000000000000000000 0 111 555 0 55 0 0 0 0 7 6 7 3 666 444 3 9 1 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 222222 222 00000 0 0 88 0 0 55 5 2 22 0 0 555 8 44 33333 7 6666666 7 77777777777777777777777777777777777 7 66 0 88 0 0 0 0 00 0 6 888888 000 0 0 66 0 0 0 2222 2 000 222 888 0 888 8 0 0 0 8 88 555 55555 88 5555555 88 0 88 000 0 0 0 2 0 0000 8888 000000 0 0 88888888 0 0 2 88 0 55 5 5555555555555 000000 0 55555555555555555555555 0 3333 33 0000000000000000000000 3333 7 0 0 7 88 88 33 0 7 777777777 000 33 33 5 0 0 0 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTG-TTTTTA-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CCA--A-TGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTAC--AGGTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC-----AAAAAGGGA--GTTTTA--TTCTACGTNGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTG-TTTTTA-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CCA--A-TGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACAT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTA---AGGTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATCATATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC-----AAAAAGAGA--GTTTTA--TTCTACGTCGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTG-TTTTTA-CATTATCAAAA-GGCTGTTTCGTTTAGGC-AA-AATATCGCTACTTTCCAAAAGGATGTTTTGTA-TAGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---G-T-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAATCT---A-AT-ATAATT-GCCAAAGAGAATTT-ACAT-------A--GTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GG--A-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGC--ATC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTTT-T-C-TGCTTTGGTGTTGCCATG---GATA-CCA--A-TGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGTAAAA------TGTTT-ATCA-----TTGGAA-AA--TT-AA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T----------T--TGTA---------GGA------AAAT-AGCCGTTT-CTATCGAGCTGTATAA-A-TTG-TTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AC---AAC---AT-CGTGC-----TTACT-G-AGT-GGTACGC-ACTT---TG---TTTTGGTCTTTTGATCCATCT-GTGTAAATACC--AATCGTAGAATGTTTGGCC-TGT-TTTATTTCGAAGAAA--TTTT---GTTT---A-AAAA-CGGCGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAC-A----GGTGT-GTC-T-ACCTT----AGGTTT----T-ATTA-ATTT-C-C------ATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAAT----TGATTGAATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA--TT--GC-----AAAA--GGA--GTTTTA--TTCTACGTAGGT-CTAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TT-G---TCA-TTAGAAA-TTGTAGTATACT--TG-A---------AAGCAAGTTGAAT-AGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGGG-AA---CAC---AT----GTG-CTATTACT-GCAGC-G-------ACTT---TA---TTTAGGTGTTTCGATCCCTCT-GTATAAATATC--AATCGTAGGATGCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAAT----TGATCCTATAGA-----------TG--------ACTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTG-CTTGCA-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGTAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTG-TTTTTAACATCACCAAAAAGGCTGTTT-GTGAAGG--AA-AATAATGCTACAT-CCAAAAGAATGTGTTGTAATAGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGT--AT--TTTTGCTG------------------------T--TCTG-T-T-CGATTTGTTACTGTCATG---GATA-CAA--A-TATGACTTG--ATC---GAAGAAC
gi|15 : agag--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAG-GA--GTTTTA--TTCTGTGTCGATGCTAGA-GTGGGTTGTTTGTCTCAACATAC
gi|16 : gccaactaTTGCCATG---GATA-TCC--A-TATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-AT-ATA
gi|2 : TGTGTCGCA--GGAATCC--CA-AT-ACGGTT-----AAAATAATTT-ACAT-TGCGAAA--GTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGG--ATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAA--GTCGTTTTGCGC------------------------CGCTTCG-T-AATGCTTTACTGTTGCCATG---TTGA-CCA--AATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TT-GAAA-T---------TT--TGTA---------GAG------TAAT--GCC
gi|2 : -AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TT-GTCATTGCGTTATTGAAATTTTGTAGAGTAATGCCACTTAATACGTGTGTCTAT---T-GAATC-AGCA-TCAATCTGTATAAA-GTATG----TTTAATC-------TTTAGACATT-------TAGA---TTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCAT-ATTTTACAAAAGTTTGTAAT-AGTAGATTT-C-TCTCTCTATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAATAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TGA-GTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTGCTGT----------AAAAGAGATTGTTTTATTTTTTACGTacttaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagATGTGTAAATTTAGCATGGCCAATACGTAATCGTG-AATAGATAACTTCATACC------T---GTT-CGTTTGAGTATGACGTT--ACTC-GTTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTT-ACAA-TAC---A--GTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTGC--------------------------CGCTTTGTT-C-TGCTTTGGTGTTGCCATG---GATA-CCA--A-TGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGG-A-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TT-GCTGTCT-TTGGAAG-T---------CT--TGTA---------GAG------GAAC-Atcgtttgctcttagagcattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T---------TTAATATACTTAAAAGCGAGTT----GAATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTT-GCTG-T-C--TTTGGAAGTCTTGTAGAGGAA---CAC---AT-CGTGTG-CTA-TACTAGCAGCGGGCA-GCGACAT---TAAATTTTTGGTCTTTTGAATCATATCGTATAAATTTCA-AATCGTAGAATGTTTTACCTTGT-TTTTATTCGGAAGAA--TTTTATAGTTT---G-AAAA--GACGGG---A-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAG-AAAGTGATGTGGTC-TCTCTTTAT--AGGTTT----TAATTACATTTGC-C------ATGACGGTATTTCAAGAACACG--TTcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---G-TTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTT-GTTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-AT-ATAATTTGACAAAGA--ATTT-ACAA-T-----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GA--A-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------C--TTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CCA--A-TGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAAT-TGT-----TG-CC--TCGTTTGGAAG-T---------CT--TGTA---------GAG------AAtga
gi|4 : TGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT---------TTAATATACTTAAAAGCGAGTT----GAAT-AGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACAT---TAAA-TTTTGGTCTTTTGAT-CATCT-GTATAAATATCTAAATCGTAGAATGTTTTACC-TGT-TTT-TTTCGAAGAAT--TTTT---GTTT---G-AAAA-GAACGGG---ATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GGC-T-CCTTTA---AGGTTTTA--T-ATTA-CTTT-CGC------ATGACGGTATTTC-AGAACACG--TTGAGcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTG-ATTGCA-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAACAAT-AACAGAGAGTCAAAACATGT-A--CATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---G-A-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-AT-AGATTT-GCTACAGAGTATTTAACTT-T-----A--GCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GG--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGC--ATtagaaacaaacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCATT---AATA-CCA--G-AATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAA-AAAT-CGCTATATTCCAAAAGGACGTGTTGT-ATTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---G-G-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCA-GTTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-AT-ACA-TT-GCGGAAGAGAATTT-ACATAC-----A--ATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---G-G-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTA-GTTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-AT-A---------------AATTT-A--------------------TGAAAT-----ATCT------------TAGA--TCTGCAGGG-GT--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGC--ATC-TTTTGCCT------------------------C--TTTG-TGT-TGGTATGG-ATTGCCATGATAGATATCCATGA-TGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGG-G-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCT-ATATTT-GCCAA-GAGAATTT-ACAT-A-----A--ATTTC-CAAAGGT---------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGC--TTC-TTTTG--G------------------------CGCTCTG-T-C-TGCTTTGGTGTTGCCATG---TATA-CCA--A-TGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTG-T-C-TGTTTTGGTGTTA--ATGCA-AATA-CCA--A-TATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1 33333333333 222 1 11111111111111 11 33333333333 11 11111 222222222222 222222222222222 11 1111 11111 66666666666666666666666666666 111 111 1111111 2222 55555555555555555555555 1111 11 11 222222 111 22222 1 11 1 11 1 11 1 1 111 1 22 11111 1111111 66666666666666666666666666666666666 11 1 111111 111 1111 111 111 111 11 111 22222 11 1111111 11 1 11 111 1 1 1 1 1111 11 11 333333 2 1 33333333 1 11 11 1 4444444444444 222222 44444444444444444444444 2222 5555555555555555555555 2 1 11 11 33 555555555 11 11 11 22222222 1
lowQualScore : 1 1 8 5 8 0 0 8 8 5 0 5 55555555555 1 5 1 99 0 3 444 7 0 3 1 1 0 1 3 11 5 5 5 99999999999999 1 2 77 5 77 44 777 1 0 0 66 66 4 4 2 7 8888 0 8 5 11111111111 00 22222 555555555555 0 77 0 111111111111111 5 66 0000 77777 888 66 5 44444444444444444444444444444 5 777 222 4 4 55 4 5 5 5 6 5 4 888 000 5 7 2 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 888888 222 55555 7 0 33 7 0 22 5 3 33 0 0 777 0 11 44444 5 6666666 5 33333333333333333333333333333333333 5 88 8 88 8 8 8 8 99 8 0 666666 444 8 8 0 0 8 5 8 1111 1 444 999 333 8 999 0 1 8 8 9 33 777 11111 88 9999999 33 0 33 111 0 0 0 3 0 2222 66 33 666666 0 0 22222222 7 0 3 33 1 88 5 9999999999999 999999 1 11111111111111111111111 1 8888 22 2222222222222222222222 8888 6 2 1 0 33 33 33 1 6 999999999 11 88 88 1 99999999 6 1 5
lowQualScore : . . . . . . . . . . . . ........... . . . .. . . ... . . . . . . . . .. . . . .............. . . .. . .. .. ... . . . .. .. . . . . .... . . . ........... .. ..... ............ . .. . ............... . .. .... ..... ... .. . ............................. . ... ... . . .. . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . ...... ... ..... . . .. . . .. . . .. . . ... . .. ..... . ....... . ................................... . .. . .. . . . . .. . . ...... ... . . . . . . . .... . ... ... ... . ... . . . . . .. ... ..... .. ....... .. . .. ... . . . . . .... .. .. ...... . . ........ . . . .. . .. . ............. ...... . ....................... . .... .. ...................... .... . . . . .. .. .. . . ......... .. .. .. . ........ . . .
lowQualScore : 0 4 0 6 0 8 6 0 0 8 8 0 44444444444 0 6 0 88 8 2 333 3 7 3 0 4 4 4 0 77 7 4 7 99999999999999 0 7 99 7 99 66 000 1 4 1 11 11 4 4 4 6 2222 1 8 0 00000000000 00 55555 666666666666 7 99 7 000000000000000 0 99 6666 55555 888 99 7 00000000000000000000000000000 0 111 555 0 0 55 0 0 0 7 6 7 3 666 444 3 9 1 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 222222 222 00000 0 0 88 0 0 55 5 2 22 0 0 555 8 44 33333 7 6666666 7 77777777777777777777777777777777777 7 66 0 88 0 0 0 0 00 0 6 888888 000 0 0 8 8 0 0 0 2222 0 000 222 888 0 888 8 0 0 0 8 88 555 55555 88 5555555 88 0 88 000 0 0 0 2 0 0000 00 88 000000 0 0 88888888 0 0 2 88 0 55 5 5555555555555 000000 0 55555555555555555555555 0 3333 00 0000000000000000000000 3333 7 0 0 7 88 88 33 0 7 000000000 00 33 33 0 33333333 7 0 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTCGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTNGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTGTTTTT-A-CATTATCAAAA-GGCTGTTTCGTTTAGGC-AA-AATATCGCTACTTTCCAAAAGGATGTTTTGTA-TAGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---G-T-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAATCT---A-AT-ATAATT-GCCAAAGAGAATTT-ACAT-------A--GTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GG--A-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGC--ATC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTTT-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGTAAAA------TGTTT-ATCA-----TTGGAA-AA--TT-AA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T----------T--TGTA---------GGA------AAAT-AGCCGTTT-CTATCGAGCTGTATAA-A-TTG-TTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AC---AAC---AT-CGTGC-----TTACT-G-AGT-GGTACGC-ACTT---TG---TTTTGGTCTTTTGATCCATCT-GTGTAAATACC--AATCGTAGAATGTTTGGCC-TGT-TTTATTTCGAAGAAA--TTTT---GTTT---A-AAAA-CGGCGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAC-A----GGTGT-GTC-T-ACCTT--AG--GTTT----T-ATTA-ATTT-C-C------ATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAAT----TGATTGAATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA--TT--GC---A-AAA--GGA--GTTTTA--TTCTACGTAGG--T-C---TAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TT-G---TCA-TTAGAAA-TTGTAGTATACT--TG-A---------AAGCAAGTTGAAT-AGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGGG-AA---CAC---AT----GTG-CTATTACT-GCAGC-G-------ACTT---TA---TTTAGGTGTTTCGATCCCTCT-GTATAAATATC--AATCGTAGGATGCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAAT----TGATCCTATAGA-----------TG--------ACTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTGCTTGC-A-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGTAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTGTTTTT-AACATCACCAAAAAGGCTGTTT-GTGAAGG--AA-AATAATGCTACAT-CCAAAAGAATGTGTTGTAATAGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGT--AT--TTTTGCTG------------------------T--TCTG-T-T-CGATTTGTTACTGTCATG---GATA-CA-A--ATATGACTTG--ATC---GAAGAAC
gi|15 : agag--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAGGA--GTTTTA--TTCTGTGTCGA--TGC---TAGA-GTGGGTTGTTTGTCTCAACATAC
gi|16 : gccaactaTTGCCATG---GATA-TC-C--ATATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-AT-ATA
gi|2 : TGTGTCGCA--GGAATCC--CA-AT-ACGGTT-----AAAATAATTT-ACAT-TGCGAAA--GTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGG--ATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAA--GTCGTTTTGCGC------------------------CGCTTCG-T-AATGCTTTACTGTTGCCATG---TTGA-CCAA--ATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TT-GAAA-T---------TT--TGTA---------GAG------TAAT--GCC
gi|2 : -AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TT-GTCATTGCGTTATTGAAATTTTGTAGAGTAATGCCACTTAATACGTGTGTCTATT----GAATC-AGCA-TCAATCTGTATAAA-GTATG----TTTAATC-------TTTAGACATT-------TAGA---TTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCAT-ATTTTACAAAAGTTTGTAAT-AGTAGATTT-C-TCTCTCTATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAATAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TGA-GTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTGCTGT---------AAAAGAGATTGTTTTATTTTTTACGTTCGTTTGCTCTTAGAGacttaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagATGTGTAAATTTAGCATGGCCAATACGTAATCGTG-AATAGATAACTTCATACC------T---GTT-CGTTTGAGTATGACGTT--ACTC-GTTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTT-ACAA-TAC---A--GTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTGC--------------------------CGCTTTGTT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGG-A-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TT-GCTGTCT-TTGGAAG-T---------CT--TGTA---------GAG------GAAC-Acattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T---------TTAATATACTTAAAAGCGAGTT----GAATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTT-GCTG-T-C--TTTGGAAGTCTTGTAGAGGAA---CAC---AT-CGTGTG-CTA-TACTAGCAGCGGGCA-GCGACAT---TAAATTTTTGGTCTTTTGAATCATATCGTATAAATTTCA-AATCGTAGAATGTTTTACCTTGT-TTTTATTCGGAAGAA--TTTTATAGTTT---G-AAAA--GACGGG---A-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAG-AAAGTGATGTGGTC-TCTCTTTATAG--GTTT----TAATTACATTTGC-C------ATGACGGTATTTCAAGAACACG--TTcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---G-TTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTT-GTTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-AT-ATAATTTGACAAAGA--ATTT-ACAA-T-----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GA--A-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------C--TTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAAT-TGT-----TG-CC--TCGTTTGGAAG-T---------CT--TGTA---------GAG------AAtga
gi|4 : TGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT---------TTAATATACTTAAAAGCGAGTT----GAAT-AGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACAT---TAAA-TTTTGGTCTTTTGAT-CATCT-GTATAAATATCTAAATCGTAGAATGTTTTACC-TGT-TTT-TTTCGAAGAAT--TTTT---GTTT---G-AAAA-GAACGGG---ATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GGC-T-CCTTTA-AG--GTTTTA--T-ATTA-CTTT-CGC------ATGACGGTATTTC-AGAACACG--TTGAGcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTGATTGC-A-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAACAAT-AACAGAGAGTCAAAACATGT-A--CATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---G-A-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-AT-AGATTT-GCTACAGAGTATTTAACTT-T-----A--GCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GG--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGC--ATtagaaacaaacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCATT---AATA-CC-A--GAATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAA-AAAT-CGCTATATTCCAAAAGGACGTGTTGT-ATTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---G-G-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCA-GTTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-AT-ACA-TT-GCGGAAGAGAATTT-ACATAC-----A--ATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---G-G-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTA-GTTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-AT-A---------------AATTT-A--------------------TGAAAT-----ATCT------------TAGA--TCTGCAGGG-GT--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGC--ATC-TTTTGCCT------------------------C--TTTG-TGT-TGGTATGG-ATTGCCATGATAGATATCC-ATGATGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGG-G-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCT-ATATTT-GCCAA-GAGAATTT-ACAT-A-----A--ATTTC-CAAAGGT---------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGC--TTC-TTTTG--G------------------------CGCTCTG-T-C-TGCTTTGGTGTTGCCATG---TATA-CC-A--ATGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTG-T-C-TGTTTTGGTGTTA--ATGCA-AATA-CC-A--ATATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1 33333333333 222 1 11111111111111 11 33333333333 11 11111 222222222222 222222222222222 11 1111 11111 66666666666666666666666666666 111 111 1111111 2222 55555555555555555555555 1111 11 11 222222 111 22222 1 11 1 11 1 11 1 1 111 1 22 11111 1111111 66666666666666666666666666666666666 11 1 111111 111 1111 111 111 111 11 111 22222 11 1111111 11 1 11 111 1 1 1 1 1111 11 11 333333 2 1 33333333 1 11 11 1 4444444444444 222222 44444444444444444444444 2222 5555555555555555555555 2 1 11 11 33 555555555 11 11 11 1 1 1
lowQualScore : 1 1 8 5 8 0 0 8 8 5 0 5 55555555555 1 5 1 99 0 3 444 7 0 3 1 1 0 1 3 11 5 5 5 99999999999999 1 2 77 5 77 44 777 1 0 0 66 66 4 4 2 7 8888 0 8 5 11111111111 00 22222 555555555555 0 77 0 111111111111111 5 66 0000 77777 888 66 5 44444444444444444444444444444 5 777 222 4 4 55 4 5 5 5 6 5 4 888 000 5 7 2 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 888888 222 55555 7 0 33 7 0 22 5 3 33 0 0 777 0 11 44444 5 6666666 5 33333333333333333333333333333333333 5 88 8 88 8 8 8 8 99 8 0 666666 444 8 8 0 0 8 5 8 1111 1 444 999 333 8 999 0 1 8 8 9 33 777 11111 88 9999999 33 0 33 111 0 0 0 3 0 2222 66 33 666666 0 0 22222222 7 0 3 33 1 88 5 9999999999999 999999 1 11111111111111111111111 1 8888 22 2222222222222222222222 8888 6 2 1 0 33 33 33 1 6 999999999 11 88 88 2 5 5 1 5
lowQualScore : . . . . . . . . . . . . ........... . . . .. . . ... . . . . . . . . .. . . . .............. . . .. . .. .. ... . . . .. .. . . . . .... . . . ........... .. ..... ............ . .. . ............... . .. .... ..... ... .. . ............................. . ... ... . . .. . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . ...... ... ..... . . .. . . .. . . .. . . ... . .. ..... . ....... . ................................... . .. . .. . . . . .. . . ...... ... . . . . . . . .... . ... ... ... . ... . . . . . .. ... ..... .. ....... .. . .. ... . . . . . .... .. .. ...... . . ........ . . . .. . .. . ............. ...... . ....................... . .... .. ...................... .... . . . . .. .. .. . . ......... .. .. .. . . . . .
lowQualScore : 0 4 0 6 0 8 6 0 0 8 8 0 44444444444 0 6 0 88 8 2 333 3 7 3 0 4 4 4 0 77 7 4 7 99999999999999 0 7 99 7 99 66 000 1 4 1 11 11 4 4 4 6 2222 1 8 0 00000000000 00 55555 666666666666 7 99 7 000000000000000 0 99 6666 55555 888 99 7 00000000000000000000000000000 0 111 555 0 0 55 0 0 0 7 6 7 3 666 444 3 9 1 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 222222 222 00000 0 0 88 0 0 55 5 2 22 0 0 555 8 44 33333 7 6666666 7 77777777777777777777777777777777777 7 66 0 88 0 0 0 0 00 0 6 888888 000 0 0 8 8 0 0 0 2222 0 000 222 888 0 888 8 0 0 0 8 88 555 55555 88 5555555 88 0 88 000 0 0 0 2 0 0000 00 88 000000 0 0 88888888 0 0 2 88 0 55 5 5555555555555 000000 0 55555555555555555555555 0 3333 00 0000000000000000000000 3333 7 0 0 7 88 88 33 0 7 000000000 00 33 33 5 0 0 0 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTNGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTCGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTGTTTTT-A-CATTATCAAAA-GGCTGTTTCGTTTAGGC-AA-AATATCGCTACTTTCCAAAAGGATGTTTTGTA-TAGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---G-T-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAATCT---A-AT-ATAATT-GCCAAAGAGAATTT-ACAT-------A--GTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GG--A-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGC--ATC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTTT-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGTAAAA------TGTTT-ATCA-----TTGGAA-AA--TT-AA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T----------T--TGTA---------GGA------AAAT-AGCCGTTT-CTATCGAGCTGTATAA-A-TTG-TTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AC---AAC---AT-CGTGC-----TTACT-G-AGT-GGTACGC-ACTT---TG---TTTTGGTCTTTTGATCCATCT-GTGTAAATACC--AATCGTAGAATGTTTGGCC-TGT-TTTATTTCGAAGAAA--TTTT---GTTT---A-AAAA-CGGCGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAC-A----GGTGT-GTC-T-ACCTT--AG--GTTT----T-ATTA-ATTT-C-C------ATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAAT----TGATTGAATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA--TT--GC---A-AAA--GGA--GTTTTA--TTCTACGTAGGT-CTAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TT-G---TCA-TTAGAAA-TTGTAGTATACT--TG-A---------AAGCAAGTTGAAT-AGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGGG-AA---CAC---AT----GTG-CTATTACT-GCAGC-G-------ACTT---TA---TTTAGGTGTTTCGATCCCTCT-GTATAAATATC--AATCGTAGGATGCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAAT----TGATCCTATAGA-----------TG--------ACTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTGCTTGC-A-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGTAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTGTTTTT-AACATCACCAAAAAGGCTGTTT-GTGAAGG--AA-AATAATGCTACAT-CCAAAAGAATGTGTTGTAATAGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGT--AT--TTTTGCTG------------------------T--TCTG-T-T-CGATTTGTTACTGTCATG---GATA-CA-A--ATATGACTTG--ATC---GAAGAAC
gi|15 : agag--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAGGA--GTTTTA--TTCTGTGTCGATGCTAGA-GTGGGTTGTTTGTCTCAACATAC
gi|16 : gccaactaTTGCCATG---GATA-TC-C--ATATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-AT-ATA
gi|2 : TGTGTCGCA--GGAATCC--CA-AT-ACGGTT-----AAAATAATTT-ACAT-TGCGAAA--GTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGG--ATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAA--GTCGTTTTGCGC------------------------CGCTTCG-T-AATGCTTTACTGTTGCCATG---TTGA-CCAA--ATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TT-GAAA-T---------TT--TGTA---------GAG------TAAT--GCC
gi|2 : -AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TT-GTCATTGCGTTATTGAAATTTTGTAGAGTAATGCCACTTAATACGTGTGTCTATT----GAATC-AGCA-TCAATCTGTATAAA-GTATG----TTTAATC-------TTTAGACATT-------TAGA---TTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCAT-ATTTTACAAAAGTTTGTAAT-AGTAGATTT-C-TCTCTCTATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAATAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TGA-GTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTGCTGT---------AAAAGAGATTGTTTTATTTTTTACGTacttaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagATGTGTAAATTTAGCATGGCCAATACGTAATCGTG-AATAGATAACTTCATACC------T---GTT-CGTTTGAGTATGACGTT--ACTC-GTTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTT-ACAA-TAC---A--GTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTGC--------------------------CGCTTTGTT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGG-A-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TT-GCTGTCT-TTGGAAG-T---------CT--TGTA---------GAG------GAAC-Atcgtttgctcttagagcattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T---------TTAATATACTTAAAAGCGAGTT----GAATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTT-GCTG-T-C--TTTGGAAGTCTTGTAGAGGAA---CAC---AT-CGTGTG-CTA-TACTAGCAGCGGGCA-GCGACAT---TAAATTTTTGGTCTTTTGAATCATATCGTATAAATTTCA-AATCGTAGAATGTTTTACCTTGT-TTTTATTCGGAAGAA--TTTTATAGTTT---G-AAAA--GACGGG---A-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAG-AAAGTGATGTGGTC-TCTCTTTATAG--GTTT----TAATTACATTTGC-C------ATGACGGTATTTCAAGAACACG--TTcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---G-TTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTT-GTTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-AT-ATAATTTGACAAAGA--ATTT-ACAA-T-----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GA--A-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------C--TTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAAT-TGT-----TG-CC--TCGTTTGGAAG-T---------CT--TGTA---------GAG------AAtga
gi|4 : TGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT---------TTAATATACTTAAAAGCGAGTT----GAAT-AGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACAT---TAAA-TTTTGGTCTTTTGAT-CATCT-GTATAAATATCTAAATCGTAGAATGTTTTACC-TGT-TTT-TTTCGAAGAAT--TTTT---GTTT---G-AAAA-GAACGGG---ATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GGC-T-CCTTTA-AG--GTTTTA--T-ATTA-CTTT-CGC------ATGACGGTATTTC-AGAACACG--TTGAGcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTGATTGC-A-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAACAAT-AACAGAGAGTCAAAACATGT-A--CATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---G-A-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-AT-AGATTT-GCTACAGAGTATTTAACTT-T-----A--GCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GG--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGC--ATtagaaacaaacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCATT---AATA-CC-A--GAATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAA-AAAT-CGCTATATTCCAAAAGGACGTGTTGT-ATTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---G-G-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCA-GTTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-AT-ACA-TT-GCGGAAGAGAATTT-ACATAC-----A--ATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---G-G-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTA-GTTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-AT-A---------------AATTT-A--------------------TGAAAT-----ATCT------------TAGA--TCTGCAGGG-GT--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGC--ATC-TTTTGCCT------------------------C--TTTG-TGT-TGGTATGG-ATTGCCATGATAGATATCC-ATGATGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGG-G-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCT-ATATTT-GCCAA-GAGAATTT-ACAT-A-----A--ATTTC-CAAAGGT---------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGC--TTC-TTTTG--G------------------------CGCTCTG-T-C-TGCTTTGGTGTTGCCATG---TATA-CC-A--ATGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTG-T-C-TGTTTTGGTGTTA--ATGCA-AATA-CC-A--ATATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1 33333333333 222 1 11111111111111 11 33333333333 11 11111 222222222222 222222222222222 11 1111 11111 66666666666666666666666666666 111 111 1111111 2222 55555555555555555555555 1111 11 11 222222 111 22222 1 11 1 11 1 11 1 1 111 1 22 11111 1111111 66666666666666666666666666666666666 11 1 111111 111 1111 111 111 111 11 111 22222 11 1111111 11 1 11 111 1 1 1 1 1111 11 11 333333 2 1 33333333 1 11 11 1 4444444444444 222222 44444444444444444444444 2222 5555555555555555555555 2 1 11 11 33 555555555 11 11 11 22222222 1
lowQualScore : 1 1 8 5 8 0 0 8 8 5 0 5 55555555555 1 5 1 99 0 3 444 7 0 3 1 1 0 1 3 11 5 5 5 99999999999999 1 2 77 5 77 44 777 1 0 0 66 66 4 4 2 7 8888 0 8 5 11111111111 00 22222 555555555555 0 77 0 111111111111111 5 66 0000 77777 888 66 5 44444444444444444444444444444 5 777 222 4 4 55 4 5 5 5 6 5 4 888 000 5 7 2 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 888888 222 55555 7 0 33 7 0 22 5 3 33 0 0 777 0 11 44444 5 6666666 5 33333333333333333333333333333333333 5 88 8 88 8 8 8 8 99 8 0 666666 444 8 8 0 0 8 5 8 1111 1 444 999 333 8 999 0 1 8 8 9 33 777 11111 88 9999999 33 0 33 111 0 0 0 3 0 2222 66 33 666666 0 0 22222222 7 0 3 33 1 88 5 9999999999999 999999 1 11111111111111111111111 1 8888 22 2222222222222222222222 8888 6 2 1 0 33 33 33 1 6 999999999 11 88 88 1 99999999 6 1 5
lowQualScore : . . . . . . . . . . . . ........... . . . .. . . ... . . . . . . . . .. . . . .............. . . .. . .. .. ... . . . .. .. . . . . .... . . . ........... .. ..... ............ . .. . ............... . .. .... ..... ... .. . ............................. . ... ... . . .. . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . ...... ... ..... . . .. . . .. . . .. . . ... . .. ..... . ....... . ................................... . .. . .. . . . . .. . . ...... ... . . . . . . . .... . ... ... ... . ... . . . . . .. ... ..... .. ....... .. . .. ... . . . . . .... .. .. ...... . . ........ . . . .. . .. . ............. ...... . ....................... . .... .. ...................... .... . . . . .. .. .. . . ......... .. .. .. . ........ . . .
lowQualScore : 0 4 0 6 0 8 6 0 0 8 8 0 44444444444 0 6 0 88 8 2 333 3 7 3 0 4 4 4 0 77 7 4 7 99999999999999 0 7 99 7 99 66 000 1 4 1 11 11 4 4 4 6 2222 1 8 0 00000000000 00 55555 666666666666 7 99 7 000000000000000 0 99 6666 55555 888 99 7 00000000000000000000000000000 0 111 555 0 0 55 0 0 0 7 6 7 3 666 444 3 9 1 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 222222 222 00000 0 0 88 0 0 55 5 2 22 0 0 555 8 44 33333 7 6666666 7 77777777777777777777777777777777777 7 66 0 88 0 0 0 0 00 0 6 888888 000 0 0 8 8 0 0 0 2222 0 000 222 888 0 888 8 0 0 0 8 88 555 55555 88 5555555 88 0 88 000 0 0 0 2 0 0000 00 88 000000 0 0 88888888 0 0 2 88 0 55 5 5555555555555 000000 0 55555555555555555555555 0 3333 00 0000000000000000000000 3333 7 0 0 7 88 88 33 0 7 000000000 00 33 33 0 33333333 7 0 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTCGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTNGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTGTTTTT-A-CATTATCAAAA-GGCTGTTTCGTTTAGGC-AA-AATATCGCTACTTTCCAAAAGGATGTTTTGTA-TAGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---G-T-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAATCT---A-AT-ATAATT-GCCAAAGAGAATTT-ACAT-------A--GTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GG--A-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGC--ATC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTTT-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGTAAAA------TGTTT-ATCA-----TTGGAA-AA--TT-AA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T----------T--TGTA---------GGA------AAAT-AGCCGTTT-CTATCGAGCTGTATAA-A-TTG-TTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AC---AAC---AT-CGTGC-----TTACT-G-AGT-GGTACGC-ACTT---TG---TTTTGGTCTTTTGATCCATCT-GTGTAAATACC--AATCGTAGAATGTTTGGCC-TGT-TTTATTTCGAAGAAA--TTTT---GTTT---A-AAAA-CGGCGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAC-A----GGTGT-GTC-T-ACCTT--AG--GTTT----T-ATTA-ATTT-C-C------ATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAAT----TGATTGAATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA--TT--GC---A-AAA--GGA--GTTTTA--TTCTACGTAGG--T-C---TAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TT-G---TCA-TTAGAAA-TTGTAGTATACT--TG-A---------AAGCAAGTTGAAT-AGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGGG-AA---CAC---AT----GTG-CTATTACT-GCAGC-G-------ACTT---TA---TTTAGGTGTTTCGATCCCTCT-GTATAAATATC--AATCGTAGGATGCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAAT----TGATCCTATAGA-----------TG--------ACTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTGCTTGC-A-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGTAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTGTTTTT-AACATCACCAAAAAGGCTGTTT-GTGAAGG--AA-AATAATGCTACAT-CCAAAAGAATGTGTTGTAATAGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGT--AT--TTTTGCTG------------------------T--TCTG-T-T-CGATTTGTTACTGTCATG---GATA-CA-A--ATATGACTTG--ATC---GAAGAAC
gi|15 : agag--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAGGA--GTTTTA--TTCTGTGTCGA--TGC---TAGA-GTGGGTTGTTTGTCTCAACATAC
gi|16 : gccaactaTTGCCATG---GATA-TC-C--ATATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-AT-ATA
gi|2 : TGTGTCGCA--GGAATCC--CA-AT-ACGGTT-----AAAATAATTT-ACAT-TGCGAAA--GTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGG--ATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAA--GTCGTTTTGCGC------------------------CGCTTCG-T-AATGCTTTACTGTTGCCATG---TTGA-CCAA--ATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TT-GAAA-T---------TT--TGTA---------GAG------TAAT--GCC
gi|2 : -AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TT-GTCATTGCGTTATTGAAATTTTGTAGAGTAATGCCACTTAATACGTGTGTCTATT----GAATC-AGCA-TCAATCTGTATAAA-GTATG----TTTAATC-------TTTAGACATT-------TAGA---TTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCAT-ATTTTACAAAAGTTTGTAAT-AGTAGATTT-C-TCTCTCTATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAATAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TGA-GTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTGCTGT---------AAAAGAGATTGTTTTATTTTTTACGTTCGTTTGCTCTTAGAGacttaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagATGTGTAAATTTAGCATGGCCAATACGTAATCGTG-AATAGATAACTTCATACC------T---GTT-CGTTTGAGTATGACGTT--ACTC-GTTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTT-ACAA-TAC---A--GTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTGC--------------------------CGCTTTGTT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGG-A-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TT-GCTGTCT-TTGGAAG-T---------CT--TGTA---------GAG------GAAC-Acattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T---------TTAATATACTTAAAAGCGAGTT----GAATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTT-GCTG-T-C--TTTGGAAGTCTTGTAGAGGAA---CAC---AT-CGTGTG-CTA-TACTAGCAGCGGGCA-GCGACAT---TAAATTTTTGGTCTTTTGAATCATATCGTATAAATTTCA-AATCGTAGAATGTTTTACCTTGT-TTTTATTCGGAAGAA--TTTTATAGTTT---G-AAAA--GACGGG---A-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAG-AAAGTGATGTGGTC-TCTCTTTATAG--GTTT----TAATTACATTTGC-C------ATGACGGTATTTCAAGAACACG--TTcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---G-TTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTT-GTTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-AT-ATAATTTGACAAAGA--ATTT-ACAA-T-----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GA--A-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------C--TTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAAT-TGT-----TG-CC--TCGTTTGGAAG-T---------CT--TGTA---------GAG------AAtga
gi|4 : TGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT---------TTAATATACTTAAAAGCGAGTT----GAAT-AGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACAT---TAAA-TTTTGGTCTTTTGAT-CATCT-GTATAAATATCTAAATCGTAGAATGTTTTACC-TGT-TTT-TTTCGAAGAAT--TTTT---GTTT---G-AAAA-GAACGGG---ATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GGC-T-CCTTTA-AG--GTTTTA--T-ATTA-CTTT-CGC------ATGACGGTATTTC-AGAACACG--TTGAGcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTGATTGC-A-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAACAAT-AACAGAGAGTCAAAACATGT-A--CATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---G-A-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-AT-AGATTT-GCTACAGAGTATTTAACTT-T-----A--GCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GG--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGC--ATtagaaacaaacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCATT---AATA-CC-A--GAATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAA-AAAT-CGCTATATTCCAAAAGGACGTGTTGT-ATTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---G-G-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCA-GTTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-AT-ACA-TT-GCGGAAGAGAATTT-ACATAC-----A--ATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---G-G-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTA-GTTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-AT-A---------------AATTT-A--------------------TGAAAT-----ATCT------------TAGA--TCTGCAGGG-GT--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGC--ATC-TTTTGCCT------------------------C--TTTG-TGT-TGGTATGG-ATTGCCATGATAGATATCC-ATGATGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGG-G-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCT-ATATTT-GCCAA-GAGAATTT-ACAT-A-----A--ATTTC-CAAAGGT---------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGC--TTC-TTTTG--G------------------------CGCTCTG-T-C-TGCTTTGGTGTTGCCATG---TATA-CC-A--ATGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTG-T-C-TGTTTTGGTGTTA--ATGCA-AATA-CC-A--ATATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1 33333333333 222 1 11111111111111 11 33333333333 11 11111 222222222222 222222222222222 11 1111 11111 66666666666666666666666666666 111 111 1111111 2222 55555555555555555555555 1111 11 11 222222 111 22222 1 11 1 11 1 11 1 1 111 1 22 11111 1111111 66666666666666666666666666666666666 11 1 111111 111 1111 111 111 111 11 111 22222 11 1111111 11 1 11 111 1 1 1 1 1111 11 11 333333 2 1 33333333 1 11 11 1 4444444444444 222222 44444444444444444444444 2222 5555555555555555555555 2 1 11 11 33 555555555 11 11 11 1 1 1
lowQualScore : 1 1 8 5 8 0 0 8 8 5 0 5 55555555555 1 5 1 99 0 3 444 7 0 3 1 1 0 1 3 11 5 5 5 99999999999999 1 2 77 5 77 44 777 1 0 0 66 66 4 4 2 7 8888 0 8 5 11111111111 00 22222 555555555555 0 77 0 111111111111111 5 66 0000 77777 888 66 5 44444444444444444444444444444 5 777 222 4 4 55 4 5 5 5 6 5 4 888 000 5 7 2 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 888888 222 55555 7 0 33 7 0 22 5 3 33 0 0 777 0 11 44444 5 6666666 5 33333333333333333333333333333333333 5 88 8 88 8 8 8 8 99 8 0 666666 444 8 8 0 0 8 5 8 1111 1 444 999 333 8 999 0 1 8 8 9 33 777 11111 88 9999999 33 0 33 111 0 0 0 3 0 2222 66 33 666666 0 0 22222222 7 0 3 33 1 88 5 9999999999999 999999 1 11111111111111111111111 1 8888 22 2222222222222222222222 8888 6 2 1 0 33 33 33 1 6 999999999 11 88 88 2 5 5 1 5
lowQualScore : . . . . . . . . . . . . ........... . . . .. . . ... . . . . . . . . .. . . . .............. . . .. . .. .. ... . . . .. .. . . . . .... . . . ........... .. ..... ............ . .. . ............... . .. .... ..... ... .. . ............................. . ... ... . . .. . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . ...... ... ..... . . .. . . .. . . .. . . ... . .. ..... . ....... . ................................... . .. . .. . . . . .. . . ...... ... . . . . . . . .... . ... ... ... . ... . . . . . .. ... ..... .. ....... .. . .. ... . . . . . .... .. .. ...... . . ........ . . . .. . .. . ............. ...... . ....................... . .... .. ...................... .... . . . . .. .. .. . . ......... .. .. .. . . . . .
lowQualScore : 0 4 0 6 0 8 6 0 0 8 8 0 44444444444 0 6 0 88 8 2 333 3 7 3 0 4 4 4 0 77 7 4 7 99999999999999 0 7 99 7 99 66 000 1 4 1 11 11 4 4 4 6 2222 1 8 0 00000000000 00 55555 666666666666 7 99 7 000000000000000 0 99 6666 55555 888 99 7 00000000000000000000000000000 0 111 555 0 0 55 0 0 0 7 6 7 3 666 444 3 9 1 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 222222 222 00000 0 0 88 0 0 55 5 2 22 0 0 555 8 44 33333 7 6666666 7 77777777777777777777777777777777777 7 66 0 88 0 0 0 0 00 0 6 888888 000 0 0 8 8 0 0 0 2222 0 000 222 888 0 888 8 0 0 0 8 88 555 55555 88 5555555 88 0 88 000 0 0 0 2 0 0000 00 88 000000 0 0 88888888 0 0 2 88 0 55 5 5555555555555 000000 0 55555555555555555555555 0 3333 00 0000000000000000000000 3333 7 0 0 7 88 88 33 0 7 000000000 00 33 33 5 0 0 0 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTNGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTCGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTGTTTTT-A-CATTATCAAAA-GGCTGTTTCGTTTAGGC-AA-AATATCGCTACTTTCCAAAAGGATGTTTTGTA-TAGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---G-T-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAATCT---A-AT-ATAATT-GCCAAAGAGAATTT-ACAT-------A--GTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GG--A-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGC--ATC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTTT-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGTAAAA------TGTTT-ATCA-----TTGGAA-AA--TT-AA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T----------T--TGTA---------GGA------AAAT-AGCCGTTT-CTATCGAGCTGTATAA-A-TTG-TTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AC---AAC---AT-CGTGC-----TTACT-G-AGT-GGTACGC-ACTT---TG---TTTTGGTCTTTTGATCCATCT-GTGTAAATACC--AATCGTAGAATGTTTGGCC-TGT-TTTATTTCGAAGAAA--TTTT---GTTT---A-AAAA-CGGCGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAC-A----GGTGT-GTC-T-ACCTT--AG--GTTT----T-ATTA-ATTT-C-C------ATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAAT----TGATTGAATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA--TT--GC---A-AAA--GGA--GTTTTA--TTCTACGTAGGT-CTAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TT-G---TCA-TTAGAAA-TTGTAGTATACT--TG-A---------AAGCAAGTTGAAT-AGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGGG-AA---CAC---AT----GTG-CTATTACT-GCAGC-G-------ACTT---TA---TTTAGGTGTTTCGATCCCTCT-GTATAAATATC--AATCGTAGGATGCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAAT----TGATCCTATAGA-----------TG--------ACTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTGCTTGC-A-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGTAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTGTTTTT-AACATCACCAAAAAGGCTGTTT-GTGAAGG--AA-AATAATGCTACAT-CCAAAAGAATGTGTTGTAATAGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGT--AT--TTTTGCTG------------------------T--TCTG-T-T-CGATTTGTTACTGTCATG---GATA-CA-A--ATATGACTTG--ATC---GAAGAAC
gi|15 : agag--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAGGA--GTTTTA--TTCTGTGTCGATGCTAGA-GTGGGTTGTTTGTCTCAACATAC
gi|16 : gccaactaTTGCCATG---GATA-TC-C--ATATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-AT-ATA
gi|2 : TGTGTCGCA--GGAATCC--CA-AT-ACGGTT-----AAAATAATTT-ACAT-TGCGAAA--GTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGG--ATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAA--GTCGTTTTGCGC------------------------CGCTTCG-T-AATGCTTTACTGTTGCCATG---TTGA-CCAA--ATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TT-GAAA-T---------TT--TGTA---------GAG------TAAT--GCC
gi|2 : -AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TT-GTCATTGCGTTATTGAAATTTTGTAGAGTAATGCCACTTAATACGTGTGTCTATT----GAATC-AGCA-TCAATCTGTATAAA-GTATG----TTTAATC-------TTTAGACATT-------TAGA---TTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCAT-ATTTTACAAAAGTTTGTAAT-AGTAGATTT-C-TCTCTCTATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAATAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TGA-GTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTGCTGT---------AAAAGAGATTGTTTTATTTTTTACGTacttaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagATGTGTAAATTTAGCATGGCCAATACGTAATCGTG-AATAGATAACTTCATACC------T---GTT-CGTTTGAGTATGACGTT--ACTC-GTTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTT-ACAA-TAC---A--GTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTGC--------------------------CGCTTTGTT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGG-A-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TT-GCTGTCT-TTGGAAG-T---------CT--TGTA---------GAG------GAAC-Atcgtttgctcttagagcattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T---------TTAATATACTTAAAAGCGAGTT----GAATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTT-GCTG-T-C--TTTGGAAGTCTTGTAGAGGAA---CAC---AT-CGTGTG-CTA-TACTAGCAGCGGGCA-GCGACAT---TAAATTTTTGGTCTTTTGAATCATATCGTATAAATTTCA-AATCGTAGAATGTTTTACCTTGT-TTTTATTCGGAAGAA--TTTTATAGTTT---G-AAAA--GACGGG---A-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAG-AAAGTGATGTGGTC-TCTCTTTATAG--GTTT----TAATTACATTTGC-C------ATGACGGTATTTCAAGAACACG--TTcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---G-TTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTT-GTTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-AT-ATAATTTGACAAAGA--ATTT-ACAA-T-----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GA--A-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------C--TTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAAT-TGT-----TG-CC--TCGTTTGGAAG-T---------CT--TGTA---------GAG------AAtga
gi|4 : TGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT---------TTAATATACTTAAAAGCGAGTT----GAAT-AGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACAT---TAAA-TTTTGGTCTTTTGAT-CATCT-GTATAAATATCTAAATCGTAGAATGTTTTACC-TGT-TTT-TTTCGAAGAAT--TTTT---GTTT---G-AAAA-GAACGGG---ATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GGC-T-CCTTTA-AG--GTTTTA--T-ATTA-CTTT-CGC------ATGACGGTATTTC-AGAACACG--TTGAGcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTGATTGC-A-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAACAAT-AACAGAGAGTCAAAACATGT-A--CATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---G-A-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-AT-AGATTT-GCTACAGAGTATTTAACTT-T-----A--GCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GG--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGC--ATtagaaacaaacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCATT---AATA-CC-A--GAATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAA-AAAT-CGCTATATTCCAAAAGGACGTGTTGT-ATTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---G-G-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCA-GTTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-AT-ACA-TT-GCGGAAGAGAATTT-ACATAC-----A--ATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---G-G-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTA-GTTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-AT-A---------------AATTT-A--------------------TGAAAT-----ATCT------------TAGA--TCTGCAGGG-GT--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGC--ATC-TTTTGCCT------------------------C--TTTG-TGT-TGGTATGG-ATTGCCATGATAGATATCC-ATGATGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGG-G-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCT-ATATTT-GCCAA-GAGAATTT-ACAT-A-----A--ATTTC-CAAAGGT---------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGC--TTC-TTTTG--G------------------------CGCTCTG-T-C-TGCTTTGGTGTTGCCATG---TATA-CC-A--ATGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTG-T-C-TGTTTTGGTGTTA--ATGCA-AATA-CC-A--ATATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1 33333333333 222 1 11111111111111 11 33333333333 11 11111 222222222222 222222222222222 11 1111 11111 66666666666666666666666666666 111 111 1111111 2222 55555555555555555555555 1111 11 11 222222 111 22222 1 11 1 11 1 11 1 1 111 1 22 11111 1111111 66666666666666666666666666666666666 11 1 111111 111 1111 111 111 111 11 111 22222 11 1111111 11 1 11 111 1 1 1 1 1111 11 11 333333 2 1 33333333 1 11 11 1 4444444444444 222222 44444444444444444444444 2222 5555555555555555555555 2 1 11 11 33 555555555 11 11 11 22222222 1
lowQualScore : 1 1 8 5 8 0 0 8 8 5 0 5 55555555555 1 5 1 99 0 3 444 7 0 3 1 1 0 1 3 11 5 5 5 99999999999999 1 2 77 5 77 44 777 1 0 0 66 66 4 4 2 7 8888 0 8 5 11111111111 00 22222 555555555555 0 77 0 111111111111111 5 66 0000 77777 888 66 5 44444444444444444444444444444 5 777 222 4 4 55 4 5 5 5 6 5 4 888 000 5 7 2 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 888888 222 55555 7 0 33 7 0 22 5 3 33 0 0 777 0 11 44444 5 6666666 5 33333333333333333333333333333333333 5 88 8 88 8 8 8 8 99 8 0 666666 444 8 8 0 0 8 5 8 1111 1 444 999 333 8 999 0 1 8 8 9 33 777 11111 88 9999999 33 0 33 111 0 0 0 3 0 2222 66 33 666666 0 0 22222222 7 0 3 33 1 88 5 9999999999999 999999 1 11111111111111111111111 1 8888 22 2222222222222222222222 8888 6 2 1 0 33 33 33 1 6 999999999 11 88 88 1 99999999 6 1 5
lowQualScore : . . . . . . . . . . . . ........... . . . .. . . ... . . . . . . . . .. . . . .............. . . .. . .. .. ... . . . .. .. . . . . .... . . . ........... .. ..... ............ . .. . ............... . .. .... ..... ... .. . ............................. . ... ... . . .. . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . ...... ... ..... . . .. . . .. . . .. . . ... . .. ..... . ....... . ................................... . .. . .. . . . . .. . . ...... ... . . . . . . . .... . ... ... ... . ... . . . . . .. ... ..... .. ....... .. . .. ... . . . . . .... .. .. ...... . . ........ . . . .. . .. . ............. ...... . ....................... . .... .. ...................... .... . . . . .. .. .. . . ......... .. .. .. . ........ . . .
lowQualScore : 0 4 0 6 0 8 6 0 0 8 8 0 44444444444 0 6 0 88 8 2 333 3 7 3 0 4 4 4 0 77 7 4 7 99999999999999 0 7 99 7 99 66 000 1 4 1 11 11 4 4 4 6 2222 1 8 0 00000000000 00 55555 666666666666 7 99 7 000000000000000 0 99 6666 55555 888 99 7 00000000000000000000000000000 0 111 555 0 0 55 0 0 0 7 6 7 3 666 444 3 9 1 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 222222 222 00000 0 0 88 0 0 55 5 2 22 0 0 555 8 44 33333 7 6666666 7 77777777777777777777777777777777777 7 66 0 88 0 0 0 0 00 0 6 888888 000 0 0 8 8 0 0 0 2222 0 000 222 888 0 888 8 0 0 0 8 88 555 55555 88 5555555 88 0 88 000 0 0 0 2 0 0000 00 88 000000 0 0 88888888 0 0 2 88 0 55 5 5555555555555 000000 0 55555555555555555555555 0 3333 00 0000000000000000000000 3333 7 0 0 7 88 88 33 0 7 000000000 00 33 33 0 33333333 7 0 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTCGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTNGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTGTTTTT-A-CATTATCAAAA-GGCTGTTTCGTTTAGGC-AA-AATATCGCTACTTTCCAAAAGGATGTTTTGTA-TAGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---G-T-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAATCT---A-AT-ATAATT-GCCAAAGAGAATTT-ACAT-------A--GTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GG--A-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGC--ATC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTTT-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGTAAAA------TGTTT-ATCA-----TTGGAA-AA--TT-AA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T----------T--TGTA---------GGA------AAAT-AGCCGTTT-CTATCGAGCTGTATAA-A-TTG-TTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AC---AAC---AT-CGTGC-----TTACT-G-AGT-GGTACGC-ACTT---TG---TTTTGGTCTTTTGATCCATCT-GTGTAAATACC--AATCGTAGAATGTTTGGCC-TGT-TTTATTTCGAAGAAA--TTTT---GTTT---A-AAAA-CGGCGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAC-A----GGTGT-GTC-T-ACCTT--AG--GTTT----T-ATTA-ATTT-C-C------ATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAAT----TGATTGAATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA--TT--GC---A-AAA--GGA--GTTTTA--TTCTACGTAGG--T-C---TAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TT-G---TCA-TTAGAAA-TTGTAGTATACT--TG-A---------AAGCAAGTTGAAT-AGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGGG-AA---CAC---AT----GTG-CTATTACT-GCAGC-G-------ACTT---TA---TTTAGGTGTTTCGATCCCTCT-GTATAAATATC--AATCGTAGGATGCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAAT----TGATCCTATAGA-----------TG--------ACTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTGCTTGC-A-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGTAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTGTTTTT-AACATCACCAAAAAGGCTGTTT-GTGAAGG--AA-AATAATGCTACAT-CCAAAAGAATGTGTTGTAATAGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGT--AT--TTTTGCTG------------------------T--TCTG-T-T-CGATTTGTTACTGTCATG---GATA-CA-A--ATATGACTTG--ATC---GAAGAAC
gi|15 : agag--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAGGA--GTTTTA--TTCTGTGTCGA--TGC---TAGA-GTGGGTTGTTTGTCTCAACATAC
gi|16 : gccaactaTTGCCATG---GATA-TC-C--ATATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-AT-ATA
gi|2 : TGTGTCGCA--GGAATCC--CA-AT-ACGGTT-----AAAATAATTT-ACAT-TGCGAAA--GTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGG--ATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAA--GTCGTTTTGCGC------------------------CGCTTCG-T-AATGCTTTACTGTTGCCATG---TTGA-CCAA--ATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TT-GAAA-T---------TT--TGTA---------GAG------TAAT--GCC
gi|2 : -AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TT-GTCATTGCGTTATTGAAATTTTGTAGAGTAATGCCACTTAATACGTGTGTCTATT----GAATC-AGCA-TCAATCTGTATAAA-GTATG----TTTAATC-------TTTAGACATT-------TAGA---TTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCAT-ATTTTACAAAAGTTTGTAAT-AGTAGATTT-C-TCTCTCTATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAATAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TGA-GTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTGCTGT---------AAAAGAGATTGTTTTATTTTTTACGTTCGTTTGCTCTTAGAGacttaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagATGTGTAAATTTAGCATGGCCAATACGTAATCGTG-AATAGATAACTTCATACC------T---GTT-CGTTTGAGTATGACGTT--ACTC-GTTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTT-ACAA-TAC---A--GTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTGC--------------------------CGCTTTGTT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGG-A-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TT-GCTGTCT-TTGGAAG-T---------CT--TGTA---------GAG------GAAC-Acattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T---------TTAATATACTTAAAAGCGAGTT----GAATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTT-GCTG-T-C--TTTGGAAGTCTTGTAGAGGAA---CAC---AT-CGTGTG-CTA-TACTAGCAGCGGGCA-GCGACAT---TAAATTTTTGGTCTTTTGAATCATATCGTATAAATTTCA-AATCGTAGAATGTTTTACCTTGT-TTTTATTCGGAAGAA--TTTTATAGTTT---G-AAAA--GACGGG---A-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAG-AAAGTGATGTGGTC-TCTCTTTATAG--GTTT----TAATTACATTTGC-C------ATGACGGTATTTCAAGAACACG--TTcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---G-TTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTT-GTTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-AT-ATAATTTGACAAAGA--ATTT-ACAA-T-----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GA--A-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------C--TTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAAT-TGT-----TG-CC--TCGTTTGGAAG-T---------CT--TGTA---------GAG------AAtga
gi|4 : TGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT---------TTAATATACTTAAAAGCGAGTT----GAAT-AGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACAT---TAAA-TTTTGGTCTTTTGAT-CATCT-GTATAAATATCTAAATCGTAGAATGTTTTACC-TGT-TTT-TTTCGAAGAAT--TTTT---GTTT---G-AAAA-GAACGGG---ATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GGC-T-CCTTTA-AG--GTTTTA--T-ATTA-CTTT-CGC------ATGACGGTATTTC-AGAACACG--TTGAGcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTGATTGC-A-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAACAAT-AACAGAGAGTCAAAACATGT-A--CATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---G-A-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-AT-AGATTT-GCTACAGAGTATTTAACTT-T-----A--GCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GG--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGC--ATtagaaacaaacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCATT---AATA-CC-A--GAATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAA-AAAT-CGCTATATTCCAAAAGGACGTGTTGT-ATTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---G-G-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCA-GTTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-AT-ACA-TT-GCGGAAGAGAATTT-ACATAC-----A--ATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---G-G-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTA-GTTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-AT-A---------------AATTT-A--------------------TGAAAT-----ATCT------------TAGA--TCTGCAGGG-GT--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGC--ATC-TTTTGCCT------------------------C--TTTG-TGT-TGGTATGG-ATTGCCATGATAGATATCC-ATGATGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGG-G-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCT-ATATTT-GCCAA-GAGAATTT-ACAT-A-----A--ATTTC-CAAAGGT---------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGC--TTC-TTTTG--G------------------------CGCTCTG-T-C-TGCTTTGGTGTTGCCATG---TATA-CC-A--ATGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTG-T-C-TGTTTTGGTGTTA--ATGCA-AATA-CC-A--ATATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1 33333333333 222 1 11111111111111 11 33333333333 11 11111 222222222222 222222222222222 11 1111 11111 66666666666666666666666666666 111 111 1111111 2222 55555555555555555555555 1111 11 11 222222 111 22222 1 11 1 11 1 11 1 1 111 1 22 11111 1111111 66666666666666666666666666666666666 11 1 111111 111 1111 111 111 111 11 111 22222 11 1111111 11 1 11 111 1 1 1 1 1111 11 11 333333 2 1 33333333 1 11 11 1 4444444444444 222222 44444444444444444444444 2222 5555555555555555555555 2 1 11 11 33 555555555 11 11 11 1 1 1
lowQualScore : 1 1 8 5 8 0 0 8 8 5 0 5 55555555555 1 5 1 99 0 3 444 7 0 3 1 1 0 1 3 11 5 5 5 99999999999999 1 2 77 5 77 44 777 1 0 0 66 66 4 4 2 7 8888 0 8 5 11111111111 00 22222 555555555555 0 77 0 111111111111111 5 66 0000 77777 888 66 5 44444444444444444444444444444 5 777 222 4 4 55 4 5 5 5 6 5 4 888 000 5 7 2 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 888888 222 55555 7 0 33 7 0 22 5 3 33 0 0 777 0 11 44444 5 6666666 5 33333333333333333333333333333333333 5 88 8 88 8 8 8 8 99 8 0 666666 444 8 8 0 0 8 5 8 1111 1 444 999 333 8 999 0 1 8 8 9 33 777 11111 88 9999999 33 0 33 111 0 0 0 3 0 2222 66 33 666666 0 0 22222222 7 0 3 33 1 88 5 9999999999999 999999 1 11111111111111111111111 1 8888 22 2222222222222222222222 8888 6 2 1 0 33 33 33 1 6 999999999 11 88 88 2 5 5 1 5
lowQualScore : . . . . . . . . . . . . ........... . . . .. . . ... . . . . . . . . .. . . . .............. . . .. . .. .. ... . . . .. .. . . . . .... . . . ........... .. ..... ............ . .. . ............... . .. .... ..... ... .. . ............................. . ... ... . . .. . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . ...... ... ..... . . .. . . .. . . .. . . ... . .. ..... . ....... . ................................... . .. . .. . . . . .. . . ...... ... . . . . . . . .... . ... ... ... . ... . . . . . .. ... ..... .. ....... .. . .. ... . . . . . .... .. .. ...... . . ........ . . . .. . .. . ............. ...... . ....................... . .... .. ...................... .... . . . . .. .. .. . . ......... .. .. .. . . . . .
lowQualScore : 0 4 0 6 0 8 6 0 0 8 8 0 44444444444 0 6 0 88 8 2 333 3 7 3 0 4 4 4 0 77 7 4 7 99999999999999 0 7 99 7 99 66 000 1 4 1 11 11 4 4 4 6 2222 1 8 0 00000000000 00 55555 666666666666 7 99 7 000000000000000 0 99 6666 55555 888 99 7 00000000000000000000000000000 0 111 555 0 0 55 0 0 0 7 6 7 3 666 444 3 9 1 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 222222 222 00000 0 0 88 0 0 55 5 2 22 0 0 555 8 44 33333 7 6666666 7 77777777777777777777777777777777777 7 66 0 88 0 0 0 0 00 0 6 888888 000 0 0 8 8 0 0 0 2222 0 000 222 888 0 888 8 0 0 0 8 88 555 55555 88 5555555 88 0 88 000 0 0 0 2 0 0000 00 88 000000 0 0 88888888 0 0 2 88 0 55 5 5555555555555 000000 0 55555555555555555555555 0 3333 00 0000000000000000000000 3333 7 0 0 7 88 88 33 0 7 000000000 00 33 33 5 0 0 0 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTNGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTCGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTGTTTTT-A-CATTATCAAAA-GGCTGTTTCGTTTAGGC-AA-AATATCGCTACTTTCCAAAAGGATGTTTTGTA-TAGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---G-T-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAATCT---A-AT-ATAATT-GCCAAAGAGAATTT-ACAT-------A--GTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GG--A-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGC--ATC-TTTTGACGCTTTTTCTGTCTTGGTATTGCTATCGCTTTT-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGTAAAA------TGTTT-ATCA-----TTGGAA-AA--TT-AA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TT-GC--TCG-TTGGAAG-T----------T--TGTA---------GGA------AAAT-AGCCGTTT-CTATCGAGCTGTATAA-A-TTG-TTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AC---AAC---AT-CGTGC-----TTACT-G-AGT-GGTACGC-ACTT---TG---TTTTGGTCTTTTGATCCATCT-GTGTAAATACC--AATCGTAGAATGTTTGGCC-TGT-TTTATTTCGAAGAAA--TTTT---GTTT---A-AAAA-CGGCGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAC-A----GGTGT-GTC-T-ACCTT--AG--GTTT----T-ATTA-ATTT-C-C------ATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAAT----TGATTGAATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA--TT--GC---A-AAA--GGA--GTTTTA--TTCTACGTAGGT-CTAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TT-G---TCA-TTAGAAA-TTGTAGTATACT--TG-A---------AAGCAAGTTGAAT-AGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGGG-AA---CAC---AT----GTG-CTATTACT-GCAGC-G-------ACTT---TA---TTTAGGTGTTTCGATCCCTCT-GTATAAATATC--AATCGTAGGATGCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAAT----TGATCCTATAGA-----------TG--------ACTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTGCTTGC-A-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGTAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTGTTTTT-AACATCACCAAAAAGGCTGTTT-GTGAAGG--AA-AATAATGCTACAT-CCAAAAGAATGTGTTGTAATAGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGT--AT--TTTTGCTG------------------------T--TCTG-T-T-CGATTTGTTACTGTCATG---GATA-CA-A--ATATGACTTG--ATC---GAAGAAC
gi|15 : agag--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAGGA--GTTTTA--TTCTGTGTCGATGCTAGA-GTGGGTTGTTTGTCTCAACATAC
gi|16 : gccaactaTTGCCATG---GATA-TC-C--ATATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-AT-ATA
gi|2 : TGTGTCGCA--GGAATCC--CA-AT-ACGGTT-----AAAATAATTT-ACAT-TGCGAAA--GTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGG--ATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAA--GTCGTTTTGCGC------------------------CGCTTCG-T-AATGCTTTACTGTTGCCATG---TTGA-CCAA--ATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATT-GCG-TTA-TT-GAAA-T---------TT--TGTA---------GAG------TAAT--GCC
gi|2 : -AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TT-GTCATTGCGTTATTGAAATTTTGTAGAGTAATGCCACTTAATACGTGTGTCTATT----GAATC-AGCA-TCAATCTGTATAAA-GTATG----TTTAATC-------TTTAGACATT-------TAGA---TTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCAT-ATTTTACAAAAGTTTGTAAT-AGTAGATTT-C-TCTCTCTATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAATAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TGA-GTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTGCTGT---------AAAAGAGATTGTTTTATTTTTTACGTacttaatacgtgtgtctattgaatcagcatcaatctgtataaagtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaaaagtgagATGTGTAAATTTAGCATGGCCAATACGTAATCGTG-AATAGATAACTTCATACC------T---GTT-CGTTTGAGTATGACGTT--ACTC-GTTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTT-ACAA-TAC---A--GTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTGC--------------------------CGCTTTGTT-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGG-A-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TT-GCTGTCT-TTGGAAG-T---------CT--TGTA---------GAG------GAAC-Atcgtttgctcttagagcattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TTTGC----A-TTGGAAA-T---------TTAATATACTTAAAAGCGAGTT----GAATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTT-GCTG-T-C--TTTGGAAGTCTTGTAGAGGAA---CAC---AT-CGTGTG-CTA-TACTAGCAGCGGGCA-GCGACAT---TAAATTTTTGGTCTTTTGAATCATATCGTATAAATTTCA-AATCGTAGAATGTTTTACCTTGT-TTTTATTCGGAAGAA--TTTTATAGTTT---G-AAAA--GACGGG---A-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAG-AAAGTGATGTGGTC-TCTCTTTATAG--GTTT----TAATTACATTTGC-C------ATGACGGTATTTCAAGAACACG--TTcatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---G-TTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTT-GTTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-AT-ATAATTTGACAAAGA--ATTT-ACAA-T-----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GA--A-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------C--TTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAAT-TGT-----TG-CC--TCGTTTGGAAG-T---------CT--TGTA---------GAG------AAtga
gi|4 : TGGTAAAAA--TGT-----TT-GG--TCA-TTGGAAAAT---------TTAATATACTTAAAAGCGAGTT----GAAT-AGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TT-GCC--T-CGTTT-GGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACAT---TAAA-TTTTGGTCTTTTGAT-CATCT-GTATAAATATCTAAATCGTAGAATGTTTTACC-TGT-TTT-TTTCGAAGAAT--TTTT---GTTT---G-AAAA-GAACGGG---ATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GGC-T-CCTTTA-AG--GTTTTA--T-ATTA-CTTT-CGC------ATGACGGTATTTC-AGAACACG--TTGAGcacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTGATTGC-A-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAACAAT-AACAGAGAGTCAAAACATGT-A--CATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---G-A-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-AT-AGATTT-GCTACAGAGTATTTAACTT-T-----A--GCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GG--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGC--ATtagaaacaaacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCATT---AATA-CC-A--GAATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAA-AAAT-CGCTATATTCCAAAAGGACGTGTTGT-ATTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---G-G-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCA-GTTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-AT-ACA-TT-GCGGAAGAGAATTT-ACATAC-----A--ATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---G-G-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTA-GTTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-AT-A---------------AATTT-A--------------------TGAAAT-----ATCT------------TAGA--TCTGCAGGG-GT--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGC--ATC-TTTTGCCT------------------------C--TTTG-TGT-TGGTATGG-ATTGCCATGATAGATATCC-ATGATGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGG-G-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCT-ATATTT-GCCAA-GAGAATTT-ACAT-A-----A--ATTTC-CAAAGGT---------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGC--TTC-TTTTG--G------------------------CGCTCTG-T-C-TGCTTTGGTGTTGCCATG---TATA-CC-A--ATGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTG-T-C-TGTTTTGGTGTTA--ATGCA-AATA-CC-A--ATATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
blockSeqs : G T C A C T A T C CGGATAATA A T A GT T ATG T T T A A G AA G A A TACAATTGG G C TT C AA TG CA A AA AC T A T G TGAC T A TTGCGAAA GA GGCTG CCTTCCTAGGTA GT GGCGGATCACCTG G TA ATAA ATACT ATT AA G CGCCG T AA ATA T A TG A T T C A T G TG CGA A C G ACAAT GTT TATCTAAAATGTTA T G TTTA AA G TA A G TTTGCA GGT TACAT G T CT C C C A T TT T A . T CT TGTCA T CTGTCT A TGTAGTATACTTGAAAGCAAGTT T TG . GG G C G . AT G T TAATGC TTA A T A C G TCA T GTA AAT CCC C TAA G T A A GT ATA TTTGT TC GGAAT GC G TT TC A T G A G ATA AC AA GTAAT G G TCTCTCT A A A AT C AA . . AGTCGA T ATTTCTTCTTTCTTTAA G AATA CC TTTCTTTATTTTGCTCATATAA GAAA T G A AT AT TG A C TTGCCATAT AA TT TT C G . G A
blockSeqs : T A . C . . . A C CGAAAAATC A T T AA C GT . . G A A G AT . A . TCAGGG G C . . . T AA G . . . . C T GAC G . ATACA G . . . TGTGACA . G . T . . . CTGT . GT CA . . . . . . . T . G GT TA G C A AAA CG TATCTAAAAGT . A TTA . A . . . A AA . A . . T . C . T T . . . G AT . . CGTTA . TTAATATACTTAAAAGCGAGTT . G . CA . . . . G . T GAA . . . . A . GCG C . AA TCA . AA A . . T . . G G ATA . . . TT . . . A . TCT AT . TAT C . GC A . A . T . AT TGA . . . T . . . C C . AG . .
blockSeqs : A T . A . . . A . AAAATAAT A . G AA C A G T AA . T . TGTT C A . . . A A G . . . . T A GCT G . ATACA A . . . TGGAA . G . . . . . CCGC . T . . . . . . . . A . C C AG G C A A C TA . A T . G . . . A TG . . . . T . . . . . . . . G T . . CTCGT . TTAATATACTTAAAAGCGAGTT . T . G . . . . . . . AA . . . . C . GCG A . AA CA . A T . . . . . G . ATT . . . T . . . A . TC A . TA . . C . . . . . .
blockSeqs : C A . . . . . . . . . . T A . A A G AG . A . TGTT C T . . . A A A . . . . T T GCG G . TACA A . . . ATGGA . . . . . . . CCTC . C . . . . . . . . A . C G CG A A C C . TA . T . . G . . . . . . . GTCA . TTTGTAGAG . G . A . . . . . . . AA . . . . C . . A . . C . . T . .
blockSeqs : A G T A . T . TGA T T . . . . A A . . . . G T GCC . . TTA C . . . GGGTA . . . . . . . CCG . C . . . . . . . . C . C C TG C . G A . . . . TCA . CTTGTAGAG .
blockSeqs : . A . . . . . TGG C T . . . . . G . . . . C . . . . TAA . . . . . . . . . . . . GCG . C . . . . . . . . . . . G . . . . G . . . CA . CTTGTAGAG .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : AA TACA******* CCG************************** CGTCA** TTATGTACTTAAAGCGAGTT*************** AA* A**
originalCons : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACAT-T-----A--GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG------------------------CGCTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GC--TCG-TTGGAAG-T---------CT--TGTA---------GAG------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATC--AATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTNGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
finalCons : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTT-ACATACA-------GTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGCCG--------------------------CTTTG-T-C-TGCTTTGGTGTTGCCATG---GATA-CC-A--ATGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TT-GCGTCA--TTGGAAG-TTTATGTACTTAAAGCGAGTT---------------GAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TT-GCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGC-GGCA-GCGACNT---TAAA-TTTTGGTCTTTTGATCCATCT-GTATAAATATCA--ATCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTNGGTGCTAGAGGTGGNTCGTTTGCCTCAACATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT
Alignments
lowQualScore : 1 33333333333 222 1 11111111111111 11 1111111111 11111 222222222222 222222222222222 11 1111 11111 444444444444444444444444444444 111 1111111 2222 55555555555555555555555 1111 11 11 22222 111 22222 1 111 1 11 1 11 1 1 111 1 11 11111 111 4444444444444 1 2222222 1 11111 1 11 1 111111 111 1111111 111 11111 11 111 22222 11 1111111 11 1 11 111 1 1 1 1 1111 11 11 333333 2 1 33333333 1 11 11 1 4444444444444 222222 44444444444444444444444 2222 5555555555555555555555 2 1 11 11 33 555555555 11 11 11 22222222 1
lowQualScore : 1 1 8 5 8 0 0 8 8 5 0 5 55555555555 1 5 1 99 0 3 444 7 0 3 1 1 0 1 3 11 5 5 5 99999999999999 1 2 77 5 77 44 777 1 0 0 66 66 4 4 7 8888 99 9999999999 5 22222 555555555555 0 77 0 111111111111111 5 66 0000 77777 888 66 5 77 5 777 0 666666666666666666666666666666 4 55 4 4 5 5 5 6 5 4 888 000 5 7 2 6666666 0 7777 55555555555555555555555 8 4 0000 11 3 11 0 8 8 3 55555 222 55555 7 0 777 0 22 5 3 33 0 0 777 0 55 44444 666 5 66 5 5555555555555 6 3 1 2222222 3 3 22222 66 6 6 6 99 8 0 666666 444 8 8 11 8 5 3333333 1 444 66 8 333 8 55555 0 1 8 8 9 33 777 11111 88 9999999 33 0 33 111 0 0 0 3 0 2222 66 33 666666 0 0 22222222 7 0 3 33 1 88 5 9999999999999 999999 1 11111111111111111111111 1 8888 22 2222222222222222222222 8888 6 2 1 0 33 33 33 1 6 999999999 11 88 88 1 99999999 6 1 5
lowQualScore : . . . . . . . . . . . . ........... . . . .. . . ... . . . . . . . . .. . . . .............. . . .. . .. .. ... . . . .. .. . . . .... .. .......... . ..... ............ . .. . ............... . .. .... ..... ... .. . .. . ... . .............................. . .. . . . . . . . . ... ... . . . ....... . .... ....................... . . .... .. . .. . . . . ..... ... ..... . . ... . .. . . .. . . ... . .. ..... ... . .. . ............. . . . ....... . . ..... .. . . . .. . . ...... ... . . .. . . ....... . ... .. . ... . ..... . . . . . .. ... ..... .. ....... .. . .. ... . . . . . .... .. .. ...... . . ........ . . . .. . .. . ............. ...... . ....................... . .... .. ...................... .... . . . . .. .. .. . . ......... .. .. .. . ........ . . .
lowQualScore : 0 4 0 6 0 8 6 0 0 8 8 0 44444444444 0 6 0 88 8 2 333 3 7 3 0 4 4 4 0 77 7 4 7 99999999999999 0 7 99 7 99 66 000 1 4 1 11 11 4 4 6 2222 00 5555555555 0 55555 666666666666 7 99 7 000000000000000 0 99 6666 55555 888 99 7 99 0 111 2 555555555555555555555555555555 0 55 0 0 0 0 7 6 7 3 666 444 3 9 1 6666666 8 2222 00000000000000000000000 0 6 0000 00 2 00 8 0 0 2 00000 222 00000 0 0 000 0 55 5 2 22 0 0 555 8 77 33333 666 7 11 7 7777777777777 7 3 0 3333333 3 2 33333 88 7 7 0 00 0 6 888888 000 0 0 66 0 0 2222222 0 000 44 0 888 0 66666 8 0 0 0 8 88 555 55555 88 5555555 88 0 88 000 0 0 0 2 0 0000 00 88 000000 0 0 88888888 0 0 2 88 0 55 5 5555555555555 000000 0 55555555555555555555555 0 3333 00 0000000000000000000000 3333 7 0 0 7 88 88 33 0 7 000000000 00 33 33 0 33333333 7 0 5
consensus : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTTAC-A-T----ACAGTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGC--CGCTTTG-T-C-TGCTTTGGTGTTGCCAT--------------------------G---GATA-CCA--A-TGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TTGC-GTCG-TTGGAAG-TT-T--------A-TG-TACTT-AAA-GCGAG------TTGAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGCGG-CAGCG-ACNT---TAAATTTT-GGTCTTTTGATCCATCT-GTATAAATATC--AA-TCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTCGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
Reference ( family-539 ) : NNNTCAATNTTAGTA-AAAAGCTCT-TTCATTGTTTTT-A-CATTATCAAAAAGGCTGTTTCGTGTAGGCGAA-AATA-CGCTACATTCCAAAAGAATGTGTTGTAATAGTTAACGGACAGTCACAAGATGT-ATACATTCGGGTTG-AAATTCTCTGTTAANCAAGTAAGAATGTGTCAATTTAGCATGGCCGATACGTAATCGTGAAATA-ATAACTTCAT-CC------T---G-N-CGTTTNAGTATGACGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TGGAGTAAAGTTTACTTGTGTCGCA--GAAATCC--CA-AT-ATANTT-GCCAAAGAGAATTTAC-A-T----ACAGTTTT-ATAAGGT-----ATTT------------TACA--TCAGTATNG-GG--A-------ATTTT-ATAGTGTA--CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGC--CGCTTTG-T-C-TGCTTTGGTGTTGCCAT--------------------------G---GATA-CCA--A-TGTGACTTGGAATC-CAGCAGAACTC-AA-CTATTTTA-CNTTG-TTTACTTA-G-ACG-ATAGTGCTGCTTTAATAT--A----TCTAAA--C-ATG------------TA---------TGG-ATGATCGATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTT-ANCA-----TTGGAA-AA--TTTAA-TATA-CTTAAAAAGCGAGTTGAA-TAG-CCT-TTG---CTTCGGCTGGTATAAA--TGT-----TTGC-GTCA-TTGGAAG-TT-T--------A-TG-TACTT-AAA-GCGAG------TTGAAT-AGCCTTTT-CT-TCGAGCTGTATAA-A-TTG-TTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGCGG-CAGCG-ACNT---TAAATTTT-GGTCTTTTGATCCATCT-GTATAAATATC--AA-TCGTAGAATGTTTNACC-TGT-TTTATTTCGAAGGAA--TTTT---GTTT---G-AAAA-CGACGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GTC-T-NCTTTACAG--GTTT----T-ATTA-ATTT-C-C------ATGACGGTATTTC-AGAACACG--TTGAGNGTTTTAAACAATATCCCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCGTAAAGGCCAATATTATGTGAGTCGATNTTTTTTCCAAANCTCGTCTTTCTTTANGANCAAT----TGATNNTATACATTTCTT--TTTTG-TCATAT-ACTTCAAACTGCGGATGGAAGACGC-GTCAAATGCAGGNTTGTCAGCG--TTAGC--TTTC-GATTTAANTATATACTTT--GC---A-AAAAGGGA--GTTTTA--TTCTACGTNGG--TGC---TAGAGGTGGNTCGTTTGCCTCAACATAC
gi|1 : TCAATTTTAGTA-ATAAGCTCC-TTCATTGTTTTT-A-CATTATCAAAA-GGCTGTTTCGTTTAGGC-AA-AATATCGCTACTTTCCAAAAGGATGTTTTGTA-TAGTTAACGGACAGTCACAAGAT---ATACATTCAGGTTG-AAATTCTCTGTTAAATAAGTAAGAATTTGCCAATTTAGCCTACCCAATACGTAATCATGAAATG-ATAACTCCAT-TC------T---G-T-CGTTTGAGTATGATGTT--ACTCGGTTTG-TTT--ACTTT-GTTTTGA-A-TAGAGTAAAGTTTACTTCTGTCGCA--GAAAT-C--TA-AT-ATAATT-GCCAAAGAGAATTTAC-A-T------AGTTTT-ATAAGGT-----ATTT------------TCCA--TCAGTATAG-GG--A-------ATTTA-ATTGTGTA--CAATATC----GTATT-----ACA---GTGC--ATC-TTTTGA--CGCTTTT-T-C-TGTCTTGGTATTGCTATCGCTTTTTCTGCTTTGGTGTTGCCATG---GATA-CCA--A-TGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CCTTG-TTTACTCA-G-AAG-ATAGTGCTGGTTTAATAT--A----TC-AAA--A-ATG------------TA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--A-CT--GTAGACAAGATAGGGAATC-TGA-AAATATGGT-AAA-----ATGTTT-ATCA-----TTGGAA-AA---TTAA-TATAGCTCAAAAAGCGAGTTGAA-TAG-CTT-TTGGCTCTCCGGCTGATATAAA--TGT-----TTGC--TCG-TTGGAAG-TT-T--------G-T----------A-G-GA---------AAAT-AGCCGTTT-CTATCGAGCTGTATAA-A-TTGTTTGCC--T-CGTTTTGGAAGTCTTGTAGAG-AC---AAC---AT-CGTGC-----TTACT-G-AGTGG-TA-CGCACTT---T--GTTTT-GGTCTTTTGATCCATCT-GTGTAAATACC--AA-TCGTAGAATGTTTGGCC-TGT-TTTATTTCGAAGAAA--TTTT---GTTT---A-AAAA-CGGCGGG---A-T-TT--GTT-TCA--GA-T-TTCT-TATA-TTCAC-A----GGTGT-GTC-T-ACCTT--AG--GTTT----T-ATTA-ATTT-C-C------ATGGTGGTATTTC-AGAACTTG--TTGAGGGTTTT--ACAATATTC
gi|1 : catACCAAT----TGATTGAATACATTTCTTGTTTTTG-TCATAT--CTTCAAACTGCGGATGGAAGACGCAGTCAAATACAGGGTTGTCAGTG--TTAGC--TTTTAGTTTTAAGTATATA--TT--GC---A-AAA--GGA--GTTTTA--TTCTACGTAGG--T-C---TAGAGGTGGTTCGTTTGCCTCAAC-TACaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaaccaattgattgaatacatttcttgtttttgtcatatcttcaaactgcggatggaagacgcagtcaaatacagggttgtcagtgttagcttttagttttaagtatatattgcaaaaggagttttattctacgtaggtctagaggtggttcgtttgcctcaactact
gi|10 : cattcaattttagtaataagctccttcattgtttttacattatcaaaaggctgtttcgtttaggcaaaatatcgctactttccaaaaggatgttttgtatagttaacggacagtcacaagatatacattcaggttgaaattctctgttaaataagtaagaatttgccaatttagcctacccaatacgtaatcatgaaatgataactccattctgtcgtttgagtatgatgttactcggtttgtttactttgttttgaatagagtaaagtttacttctgtcgcagaaatctaatataattgccaaagagaatttacatagttttataaggtattttccatcagtatagggaatttaattgtgtacaatatcgtattacagtgcatcttttgacgctttttctgtcttggtattgctatcgctttttctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttaccttgtttactcagaagatagtgctggtttaatatatcaaaaatgtatggatgatcaatgttcatgttgcttattgactgtagacaagatagggaatctgaaaatatggtaaaatgtttatcattggaaaattaatatagctcaaaaagcgagttgaatagcttttggctctccggctgatataaatgtttgctcgttggaagtttgtaggaaaatagccgtttctatcgagctgtataaattgtttgcctcgttttggaagtcttgtagagacaacatcgtgcttactgagtggtacgcactttgttttggtcttttgatccatctgtgtaaataccaatcgtagaatgtttggcctgttttatttcgaagaaattttgtttaaaaacggcgggatttgtttcagatttcttatattcacaggtgtgtctaccttaggttttattaatttccatggtggtatttcagaacttgttgagggttttacaatattcaaaggtaagtcagaatcctgtatgtgcgttttaactcgtaaAAA--TGC-----TTG---TCA-TTAGAAA-TTGT--------AGTA-TACTTGAAA-GCAAG------TTGAAT-AGCCTTTG-CT-TCG-GCTGTATAA-A-TTG-TTGCC--T-CGTTT-GGAAGTCTTGTAGGG-AA---CAC---AT----GTG-CTATTACT-GCAGCG--------ACTT---TA--TTTA-GGTGTTTCGATCCCTCT-GTATAAATATC--AA-TCGTAGGATGCTTGTCC-TGA-TTt
gi|11 : ctgaaGTAAAGGCCAATATTATGTG------TATTTTTTCCAAAACTTGT---------TGAGCAAT----TGATCCTATAGA-----------TG--------ACTTCAAATTGCGATTGGAAAACACTGACAAATGCAGGATTATCAGCG--CTATT--TTTc
gi|12 : tgagggtttgacaatgtccaaaggtaagttaaaattatTCTATGTTTGTACAAAAGTTCT-TCCATTGCTTGC-A-CAATATTAAAATGTCTGTTTCGTGTTGGCGGATAATA--ACTACATTGCAAAAGAATGTGATGTGTAAATTCATGGACAATt
gi|13 : gATTCTAGTA-AAA-GCTCTCTTCATTGTTTTT-AACATCACCAAAAAGGCTGTTT-GTGAAGG--AA-AATAATGCTACAT-CCAAAAGAATGTGTTGTAATAGTTAA-GGACAG
gi|14 : gatc-------ATTTT-ATAGTGTA---AATATTATAAGTATTATACTGAA---GTGT--AT--TTTTGC--TGTTCTG-T-T-CGATTTGTTACTGTCAT--------------------------G---GATA-CAA--A-TATGACTTG--ATC---GAAGAAC
gi|15 : agag--TTGGC--TTAC--ATTTAAAAATATACTTTTTGCCATATAAAAAGGA--GTTTTA--TTCTGTGTCGA--TGC---TAGA-GTGGGTTGTTTGTCTCAACATAC
gi|16 : gccaactaTTGCCAT--------------------------G---GATA-TCC--A-TATGACTTGAAACC-CAGCATAACTC-AA-CTAATTTA-CATTG-TTTAGTTA-C-ATA-ATAATGCAGCTTTGGTAT--A----
gi|18 : aGA-A-TAGAATAAAGTTTACTTGTGTCGCA--TAAATCC--CA-AT-ATA
gi|2 : TGTGTCGCA--GGAATCC--CA-AT-ACGGTT-----AAAATAATTTAC-A-TTGCGAAAGTTTT--TAAAATGGCTGATTTCCTTCCTAGGTATACAGTTCA-TACGGCGG--ATCACCTGATTCTGATGGTGTATACAATGTC----GTATTT----GAA---ATAA--GTCGTTTTGCGCCGCTTCG-T-AATGCTTTACTGTTGCCAT--------------------------G---TTGA-CCA--AATGTGACTTGG-ATC-CTGCAGAAATCTAA-CGATTTAACCTTTG-ATTAGTTA-G-AAG-ATA-------------AT--C----TCTAAAGTT-ATG------------TA---------TGATATGTCCGATGTTTATGTTGCTTTATTG--AGCT----------GAT-----------A-AAATATGGTAAAATTTGCATATTT-AACATACATTTGGGATAACTTTCAACTATA--TTAAAAAAAAAG-TGAG--AGTCTT-TTG---CTTCGGCTTGCATAAACTTGTTGTCATTGC-GTTA-TTGAAAT-TT-TGTAGAGTAA-TGCCACTT-AAT-ACGTGTGTCTATTGAATCAGCA--------TCAATCTGTATAA-A-
gi|2 : -AAA-GTGAG-------------AGTCTTTTGCT-TCGGCTTGCATAA-ACTTG-TTGTCATTGCGTTATTGAAATTTTGTAGAGTAATGCCACTTAATACGTGTGTCTATT----GAATCAG-CATCA-ATCTGTATAAAGTAT-G----TTTAATC-------TTTAGACATT--------TAGA---TTGAACC-TGTATTTATTTCGAAAGAAGTTTTT---GTTTTTTGTAAAATCAACAGGGGAA-T-TT--GTT-TCATTGA-TCTTCTAGATA-TTCAGGAAAGTGATGT-GTCAT-ATTTTACAAAAGTTTGTAAT-AGTAGATTT-C-TCTCTCTATG-TGGTATTTC-AG-ACATGATTTGGTCGTTTTAAACAA-ATCTCACTCCCAACTTCTAGCCTTTTACGGTAATAGTCACCGAAAGTCCGCG-------------TATATGAGTCGATTTTTT------ATTTCTTCTTTCTTTAAAATCAATAATATGATATTATACATTTCTTTATTTTGCTCATATAATTTCCAACTGCGGATG-----TGA-GTTAGAT----GTTTGTCATTGATTTAGCATTTTCTGACTTAACTATGTGCTGT---------AAAAGAGATTGTTTTATTTTTTACGTTCGTTTGCTCTTAGAGgtatgtttaatctttagacatttagattgaacctgtatttatttcgaaagaagtttttgttttttgtaaaatcaacaggggaatttgtttcattgatcttctagatattcaggaaagtgatgtgtcatattttacaaaagtttgtaatagtagatttctctctctatgtggtatttcagacatgatttggtcgttttaaacaaatctcactcccaacttctagccttttacggtaatagtcaccgaaagtccgcgtatatgagtcgattttttatttcttctttctttaaaatcaataatatgatattatacatttctttattttgctcatataatttccaactgcggatgtgagttagatgtttgtcattgatttagcattttctgacttaactatgtgctgtaaaagagattgttttattttttacgttcgtttgctcttagagcattttctaaaactacttt
gi|3 : tgtgtcgcaggaatcccaatacggttaaaataatttacattgcgaaagtttttaaaatggctgatttccttcctaggtatacagttcatacggcggatcacctgattctgatggtgtatacaatgtcgtatttgaaataagtcgttttgcgccgcttcgtaatgctttactgttgccatgttgaccaaatgtgacttggatcctgcagaaatctaacgatttaacctttgattagttagaagataatctctaaagttatgtatgatatgtccgatgtttatgttgctttattgagctgataaaatatggtaaaatttgcatatttaacatacatttgggataactttcaactatattaaaaaaATGTGTAAATTTAGCATGGCCAATACGTAATCGTG-AATAGATAACTTCATACC------T---GTT-CGTTTGAGTATGACGTT--ACTC-GTTTGCTTT--ACTTTGGTTTTGACA-TGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-ATAATATTT-GACAAAGA-AATTTACAA-T----ACAGTTTTGATAAGGT-----ATTT------------TACA--TCAGTATTG-TGACA-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGCAAATC-TTTTGC--CGCTTTGTT-C-TGCTTTGGTGTTGCCAT--------------------------G---GATA-CCA--A-TGTGACTT-GAATC-CAGCAGAACTC-AATTTATTTTA-CATTGTTTTACTTATG-ACGAATAGTGCTG-TTTAATATAAA----TATAAT--CGATG------------TATCTAAAAGTTGG-ATGATCAATGTTCATGTTGC-T--TTG--GACT--GTAGACAAGATAGAGAGTC-TGAGAAATATGGTAAAA-----ATGTTT-TGCA-----TTGG-A-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAATTAG-CCTATTG---TTTCAGCT-GTATAAGATTGG-----TTGCTGTCT-TTGGAAG-TC-T----------TG-TAcattttctaaaactacttt
gi|3 : TGGTAAAAA--TGT-----TT-T-G-CA-TTGGAAA-TT-T--------AATA-TACTT-AAAAGCGAG------TTGAATTAGCCTATT-GT-TTCAGCTGTATAAGA-TTGGTTGCTG-T-C--TTTGGAAGTCTTGTAGAGGAA---CAC---AT-CGTGTG-CTAT-ACTAGCAGCGGGCAGCG-ACAT---TAAATTTTTGGTCTTTTGAATCATATCGTATAAATTTC--AAATCGTAGAATGTTTTACCTTGT-TTTTATTCGGAAGAA--TTTTATAGTTT---G-AAAA--GACGGG---A-TATTGCGTG-TCA--GATT-TTCT-TATATTTCAG-AAAGTGATGTGGTC-TCTCTTTATAG--GTTT----TAATTACATTTGC-C------ATGACGGTATTTCAAGAACACG--TTgaggaacacatcgtgtgctatactagcagcgggcagcgacattaaatttttggtcttttgaatcatatcgtataaatttcaaatcgtagaatgttttaccttgtttttattcggaagaattttatagtttgaaaagacgggatattgcgtgtcagattttcttatatttcagaaagtgatgtggtctctctttataggttttaattacatttgccatgacggtatttcaagaacacgtttga
gi|4 : atgtgtaaatttagcatggccaatacgtaatcgtgaatagataacttcatacctgttcgtttgagtatgacgttactcgtttgctttactttggttttgacatggagtaaagtttacttgtgtcgctaaaatctcaataatatttgacaaagaaatttacaatacagttttgataaggtattttacatcagtattgtgacaattttatagtgtagcaatatcgtattgaagtgcaaatcttttgccgctttgttctgctttggtgttgccatggataccaatgtgacttgaatccagcagaactcaatttattttacattgttttacttatgacgaatagtgctgtttaatataaatataatcgatgtatctaaaagttggatgatcaatgttcatgttgctttggactgtagacaagatagagagtctgagaaataGAATGTGTAAATTTAGCATGGCCAATACGTAATCGTGAAAGA-ATAACTTCAT-CC------T---G-TTCGTTTGAGTATGACGTT--ACTCGGTTTG-CTT--ACTTT-GTTTTGA-AATGGAGTAAAGTTTACTTGTGTCGCT--AAAATCT--CA-AT-ATAATTTGACAAAGA--ATTTAC-AAT----ACAGTTTT-GTAAGGT-----ATTT------------TACA--TCAGTATTG-GA--A-------ATTTT-ATAGTGTAG-CAATATC----GTATT-----GAA---GTGC--ATC-TTTTGC--CGCTTTG-T-C-TGCTTTGGTGTTGCCAT--------------------------G---GATA-CCA--A-TGTGACTTGGAATC-CAGCAGAACTC-AA-TTATTTTA-CATTG-TTTTCTTA-GTACG-ATAGTGCTGCTTTAATAT--ACAATTATAAA--C-ATGTATCTAAAATGTTA---------TGG-ATGATCAATGTTCATGTTGC-TTATTG--AGCT--GTAGACAAGATAGAGAGTC-TGA-AAATATGGTAAAA-----ATGTTTGGTCA-----TTGGAA-AA--TTTAA-TATA-CTT-AAAAGCGAGTTGAA-TAG-CCT-TTG---TTTCAGCT-GTATAAA--TTG-----TTGC-CTCGTTTGGAAG-TC-T----------TG-TAtga
gi|4 : TGGTAAAAA--TGT-----TTG--GTCA-TTGGAAAATT-T--------AATA-TACTT-AAAAGCGAG------TTGAAT-AGCCTTTG-TT-TC-AGCTGTATAA-A-TTG-TTGCC--T-CGTTT-GGAAGTCTTGTAGAG-AA---CAC---AT-CGTGTG-CTATTACT-GCAGCGG-CAGCG-ACAT---TAAATTTT-GGTCTTTTGAT-CATCT-GTATAAATATCTAAA-TCGTAGAATGTTTTACC-TGT-TTT-TTTCGAAGAAT--TTTT---GTTT---G-AAAA-GAACGGG---ATT-TT--GCTGTCA--GA-T-TTCT-TATA-TTCAG-AAAGTGATGT-GGC-T-CCTTTA-AG--GTTTTA--T-ATTA-CTTT-CGC------ATGACGGTATTTC-AGAACACG--TTGAGgagaacacatcgtgtgctattactgcagcggcagcgacattaaattttggtcttttgatcatctgtataaatatctaaatcgtagaatgttttacctgtttttttcgaagaatttttgtttgaaaagaacgggattttgctgtcagatttcttatattcagaaagtgatgtggctcctttaaggttttatattactttcgcatgacggtatttcagaacacgttgagtagaaacaaacc
gi|5 : gaatgtgtaaatttagcatggccaatacgtaatcgtgaaagaataacttcatcctgttcgtttgagtatgacgttactcggtttgcttactttgttttgaaatggagtaaagtttacttgtgtcgctaaaatctcaatataatttgacaaagaatttacaatacagttttgtaaggtattttacatcagtattggaaattttatagtgtagcaatatcgtattgaagtgcatcttttgccgctttgtctgctttggtgttgccatggataccaatgtgacttggaatccagcagaactcaattattttacattgttttcttagtacgatagtgctgctttaatatacaattataaacatgtatctaaaatgttatggatgatcaatgttcatgttgcttattgagctgtagacaagatagagagtctgaaaataCAATATTTGTG-AAACGTTCT-TGCATTGATTGC-A-CATTATTAAAG-GGCTG-------TAG----------------------AAAAGAAAGTGGTGTAACAAT-AACAGAGAGTCAAAACATGT-A--CATTCGGGCTCTAAGGTCTCTGTTAATCAAGTAAGAATGTGTTCATTTTGAATGACTGATGCGTAATCTTTATATA-ATAACTTTTT-CC------T---G-A-CGTTTCAGTATGAAGTT--GCACGGTTTG-TTT--ACTT------------TAGAGTAAAGAT----------GAA--AAAATCC--AA-AT-AGATTT-GCTACAGAGTATTTAA-C-T----TTAGCGTT-ATGAAAT-----ATTT------------TAGA--TCAGTGTAT-GG--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----AAA---GTGC--ATtagaaacaaacc
gi|5 : aaatcacgtccttgtaaaaattaggtttgcCAT--------------------------T---AATA-CCA--G-AATGACTTGGAATCAAAGCGGAACTC-AA-CTATtaataccagaatgacttggaatcaaagcggaactcaactat
gi|6 : aaatcacgtccttgtaaaaattaggtttgccaatatttgtgaaacgttcttgcattgattgcacattattaaagggctgtagaaaagaaagtggtgtaacaataacagagagtcaaaacatgtacattcgggctctaaggtctctgttaatcaagtaagaatgtgttcattttgaatgactgatgcgtaatctttatataataactttttcctgacgtttcagtatgaagttgcacggtttgtttactttagagtaaagatgaaaaaatccaaatagatttgctacagagtatttaactttagcgttatgaaatattttagatcagtgtatggaattttaaagtgtacaatatcatatgaaagtgTCAATCTTAGCA-AAAAGCTCT-TTT-TTGTTTTTTA-CATTATCAAAAAGGCCTTTTCGTGTAGGCGAA-AAAT-CGCTATATTCCAAAAGGACGTGTTGT-ATTGTTAACGGACAGTCACAAGATATGATACATTCAGGTTG-AAATTCTCTGTTAAGCAAGTAAGAATGTGTCAATTTAGCATGGCCAATACGTAATTGTGAAATA-ATAACTTCAT-CCTACAATT---G-G-CGTTTCAGTATGATCTT--ACTCGGTTTG-TTTAAACTCA-GTTTTGA-A-TAAAATAAAGTTAACATATGTCGCA--GAAATCC--CA-AT-ACA-TT-GCGGAAGAGAATTTAC-A-T----ACAATTTT-ATAAGGT-----ATTT------------
gi|7 : CAATTTGGAATGACCGATTTGTGATCTTGAGATA-TTCACATCTT-CC------T---G-G-GGTTTTAGCATGTTGTG--ATAAGGTTTG-TTT--ACTTA-GTTTTTA-A-AGGAATAAAGGATA-TTGTGTTGCA--GAAATCC--CA-AT-----------AAA-----------------------TTT-ATGAAAT-----ATCT------------TAGA--TCTGCAGGG-GT--A-------ATTTT-AAAGTGTA--CAATATC----ATATG-----GAAATTGTGC--ATC-TTTTGC--CTCTTTG-TGT-TGGTATGG-ATTGCCAT--------------------------GATAGATATCCATGA-TGTTACTTGAAACG-CAGCAGAAATT-AA-CTATTTCA-CCTTG-CTTACTTA-C-ATG-ATAATGCTGCTTTACTAT--A----aat
gi|8 : aagtccAGAATGTGTCAATTTAGT-TGACCAATACGTAAT----------------TC-T-CC------TCAGG-G-CGTTTCAGTATGATGTTTTACTCG-TTTG-TTT--CC-----------------AGTAAAGTTTACTTCTGTTGCAAAGAAATCCACCATCT-ATATTT-GCCAA-GAGAATTTAC-A-T----AAATTTCC-A-AAGGT---------------------------------------------------TTT-ATAGTGTA--AAATATC----GTATT-----GAA---GTGC--TTC-TTTTGG--CGCTCTG-T-C-TGCTTTGGTGTTGCCAT--------------------------G---TATA-CCA--A-TGCGACTTGGAACC-CAGCAGAAC
gi|9 : GCATTG-T-C-TGTTTTGGTGTTA--AT--------------------------GCA-AATA-CCA--A-TATCGCTTGAAATA-CAACATA--TT-GA-TTGAATTA-C-TTG-TTTA-TAA-G-A-----ACTATTGATTGAGGAT--G----TCTAAA----ATG------------TA---------TGG-GTGATTTAAATTCATATT------TTGAAAGTTTAGTGAACAGGACAGACAGTTATAA-AAAac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTGTGTTCTTGTAAAAATGATTGTTAATATTTAGTAAATATTTTAGGACTGCATTGATTGCACAATGTTAAAAAGTCTGT