lowQualScore : 1 22 11 77777777777777777777777777 11 2222 2222222222222222 2222222 11111 33333333333333333 1111 11111111111 333333333333333333333 1111 22222222 222222 2222222 11111 666666666666666666666666666666666666666666666666666666 11 22222 11111 11111 11 1111111 555555555555555555555555 11 11 1 1
lowQualScore : 6 0 00 33 3 22222222222222222222222222 88 4 5555 9999999999999999 4 0000000 4 55 55555 4 22222222222222222 3 3 3 2222 55 666 9 3 777 4 4 66666 33333333333 44 666 000000000000000000000 3 4 4 4 3 55 3 7777 4 4 3 3333 5 4 44444444 000000 55 555 7777777 7777 33333 3 3 3 4 000000000000000000000000000000000000000000000000000000 33 9999999 3 7 44 0 0 0 6666 00000 22222 55555 44 0000000 666666666666666666666666 99 3 44 1 5
lowQualScore : . . .. .. . .......................... .. . .... ................ . ....... . .. ..... . ................. . . . .... .. ... . . ... . . ..... ........... .. ... ..................... . . . . . .. . .... . . . .... . . ........ ...... .. ... ....... .... ..... . . . . ...................................................... .. ....... . . .. . . . .... ..... ..... ..... .. ....... ........................ .. . .. . .
lowQualScore : 0 0 55 00 2 22222222222222222222222222 22 6 2222 4444444444444444 4 0000000 0 55 88888 0 66666666666666666 6 6 3 9999 00 444 3 2 000 0 0 22222 88888888888 66 444 999999999999999999999 3 0 0 0 6 00 6 7777 0 0 6 5555 2 4 66666666 333333 55 111 2222222 7777 88888 1 6 2 0 222222222222222222222222222222222222222222222222222222 99 3333333 1 7 88 5 5 2 5555 22222 22222 88888 77 0000000 444444444444444444444444 00 2 22 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGGTA-CAG-TAAAACACNGTTATAG-TGAACCTC---CAGGTCCAG-CG-AAAAACANTTCGTTATAACC---AAACTT----CT---TTATAAATA-CAGTAA-------A-A--CA---CAGTT-ATAG-T----GAA---C--TCCAGGGCCA-GCG-AA-AAACA-G--T--T---CGTTATAACC---AAA-C-TTCGT-TAT--A--CA-N--TAAAACA--C---AG--------------------T-TAT-A-G-TGA-A--C-CTCCAG----GGCCA-GCG-AA-AAACA-G--TTCGTTAT-AACC-----AAACTTC--GT-TA--TA--CAGT-----N-AAA----CACAG---T-TATAG-TGAAC-CT-----CC-N-GGGC-----CAG--C-G-AATAAC-------------CAAAC--TTCGT--T-------ATATCC-AATAAA-ATTTTCGTTATTTTCCTCTCAT----AGG----GGAAT--A-AAT----ATCACTTTGCAAT-------AAGCGTGAATT-------T-------GTTATAA--ATGT-TTTGTTATAAGCATGTTTAA
Reference ( gi|1 ) : GATTGAAGAAGATGCAGGGATTTGATATAAAGTATCAGAAATTCTTGAATTTAAGGAAAATTGTAGTA-CAG-AAAAACACGGTTATAA-TACACTTT---GATGACCA--CG-AAAAACAGGTCATCATAACC---AAACTT----TT---TTATAAATA-CAGTAA-------A-A--CA---TGGTT-ATCG-T----GAA---C--TCCAGGGCCA-GCG-AA-AAACA-A--T--T---CATTGTAACC---AAA-C-TTTGT-TAT--A--CA-T--TAAAACA--C---AG--------------------T-TAT-A-G-TGA-A--C-CTCCAG----GGCCA-GCG-AA-AAACA-A--TTCATCAT-AACC-----ATACTTT--GT-TA--TA--CAGT-----T-AAA----CACGG---T-TATAG-TGAAC-CT-----TC-T-GGGC-----CAG--C-G-AATAAC-------------CAAAC--TTTGT--T-------ATATCC-AATAGA-CTTTTTGTTATTTTCCTCTCAT----AGG----TGAAT--A-GAT----GTCACCTTGCAAT-------AAGCATGAATT-------T-------GT-------GTG--TTTGTGATAATCATGTGTAA
gi|8 : TTATGATA-TAG-TAAAACGTTGTTATAG-GAAACCCCCCAGA-GCCGG--TG-AAAAACATTTCATTATGATTA--AAACTT----TA---TTAT--GTA-CAGTAA-------A-A--CACTGTAATT-ATAG-T----GAAC--C--TCCAGGGATA-GCT-AA-ATAAA-ACTT--T---TGTTATAAAC---TAA-C-TTCAT-TTT------A-T--CAAAA-A--C---AG--------------------T-T
gi|7 : AGTAACAGTAAACACACTGT-ATAG-TGAACCTC---CAGGGCCAG-CC-AAAAACAATACATTATAAC----AAACTT----CT---TTATA
gi|3 : tcttctttaTA-TAG-TAAAACACAGTTATAAATGAACCTC---TAGGTCCA--GGCAAAAGCAGTTCGTAATAACC---AATCTT----CA---TTAT--ATT-CAATAA-------A-A--tctgataaaatgtttaatatcgttttcttataggagagtaaatataactttgcaataagcttgaattcattatgagtgtgcttttctg
gi|4 : aaacacttcatccttacctgcaaacacttgcataA-CAA-TAAAGCACA-TTATAG-TGAAGTTC---CATATTCAAGCG-AAAAACAGTTCGTTATAACC---AAACTCATTATTCAGTTA-AAACA-CAGTAATGGCGATA-AGGCA---CAGTTTATAG-T----GGA---CAGTACAGATCCA-GCG-AA-AGACATA--TTGT---TATTGCA------AAA-C-TT------------CA-C--TAAAATC--C---AG--------------------T-CAtgttcattataatgctcttttagggaatagatatcattttgagataagtgtaaatttgttataagtgtttttgttttaaacatgt
gi|3 : atgatcgtcaaAAACACTTCATCCTTACCTGCAAACAC----TT---GCATA--TA-TAGTAA-------A-A--CA---CAGTT-ATAAAT----GAA---CC-TCTAGGTCCA-GGC-AA-AAGCA-G--T--T---CGTAATAACC---AAT-C-TTCAT-TAT--ATTCA-A--TAAAATGTTC---A---------------------T-TAT-A-A-TGC-T--C-TTTTAG----GGag
gi|7 : CTT----CT---TTA--AGTAACAGTAA-------ACA--CA---CTGT--ATAG-T----GAA---CC-TCCAGGGCCA-GCC-AA-AAACA-A--T--A---CATTATAA-C---AAA-C-TTCTT-TAT--A--TC-TGATAAAAaatagatatcattttgagataagtgtaaatttgttataagtgtttttgttttaaacatgt
gi|8 : t---TTATGA-TA-TAGTAA-------A-A--CG---TTGTT-ATAG------GAAACCC--CCCAGAGCCG-GTG-AA-AAACA-T--T--T---CATTATGATT---AAAAC-TTTAT-TATGTA--CA-G--TAAAACA--CTGTAA--------------------T-TAT-A-G-TGA-A--C-CTCCAG----GGATA-GCT-AA-ATAAA-ACTTTTGTTATAAACT-----A-ACTTC--AT-TT--TA-----T-----C-AAA----AACAG---T-Ttgtttaatatcgttttcttataggagagtaaatataactttgcaataagcttgaattcattatgagtgtgcttttctg
gi|6 : ATA-CAGTAAGCA----A-A--TA---AAGTT-ACTT-T----------C--TC--GGGCCC-GTG-AA-AAACA-G--T--T---TGTTTTTATC---AAA-C-TTTAT-AAT--A--TA-T--
gi|5 : attccatatactttaagtgcA-CAGTAA-------A-A--CA---CATTT-ACAG-C----GAAC--C--TCCGGGACCA-ATG-AT-AAACA-ccgaagaaattttttgcaatattctctcataagggaataaaaatattaatcagttcgcaataggtgtaaatttggtatca
gi|4 : A-CAATAA-------A-G--CA---CA-TT-ATAG-T----GAAG--T--TCCATATTCAAGCG-AA-AAACA-G--T--T---CGTTATAACC---AAA-C--TCAT-TAT--T--CAGT--TAAAACA--C---AGTAATGGCGATAAGGCACAGTT-TAT-A-G-TGG-A--CAGTACAG----ATCCA-GCG-AA-AGACATA--TTtgcagtttgtttggtaatatatctaatacaattttcattattttcctctcacagggtaatcaaatatcacttgtgattagcgaaaagtgttaattcattatatgtatgttcattatgagcatgtttaactg
gi|9 : atgatcgtcaaGTAA-------A-A---A---CAGTT-ATTA-TATGAGAC---C--TCTACAGCCT-GCGTAA-AAACA-G--T--TTGACATT---ACC---ACA-C-TGTGT-TAT--AGTCA-A--CAGAACA--gttattgcaaaacttcactaaaatccagtcaag
gi|15 : acagttattatataagacctctagggcctgt---TGGTT-ATAG-T----GAA---CC-TCCAGGGCAA-GTG-AATAAAC-----T--T---TGTTATAtttcattattttcctcacataggagactgaatatgatttcataataagc
gi|12 : atacA-GCT-AA-AAA---G--T--T---CATTATAACC---AAA-C-TTCAT---T--A--CA-T--CAAAtgtggtgcaattttcgttattttcatctcagggtaatgaattcgctataagcatgttgt
gi|3 : tttgaccttcggttcaggtg-AAACA-C--T--T---CATCCTTACCTGCAAA-CACTTGCATAT--A--TA-G--TAAAACA--C---AG--------------------T-TAT-A-AATGA-A--C-CTCTAG----GTCCA-GGC-AA-AAGCA-G--TTCGTAAT-AACC-----AATCTTC--AT-TA--TATTCAAT-----A-AAATGTTCA------T-TATAA-TG--CTCT-----TT-T-AGG-------------G-AATAtgtggttttctttattttcctctaatagaggaatgagatcattttgtattaagcata
gi|8 : TTAT-GAT--A--TA-G--TAAAACG--T---TG--------------------T-TAT-A-G--GA-AACC-CCCCAG----AGCCG-GTG-AA-AAACA-T--TTCATTAT-GATTA----AAACTTT--AT-TATGTA--CAGT-----A-AAA----CACTGTAAT-TATAG-TGAAC-CT-----CC-A-GGGA-----TAG--CTA-AATA----------------AAACT-TTTGT--T-------ATAgatatcattttgagataagtgtaaatttgttataagtgtttttgttttaaacatgt
gi|4 : TCGT-CAA--A--CA-A--TAAAGCA--C---A---------------------T-TAT-A-G-TGA-A--G-TTCCAT----ATTCAAGCG-AA-AAACA-G--TTCGTTAT-AACC-----AAAC-TC--AT-TA--TT--CAGT-----TAAAA----CACAG---T-AATGG-CGAaactaacttcattttatcaaaaacagtt
gi|5 : atga--A--CA-G--TAAAACA--C---AT--------------------T-TAC-A-G-CGA-A--C-CTCCGG----GACCA-ATG-AT-AAACA-taaggcacagtttatagtggacagtacagatccagcgaaagacatattgttattgcaaaacttcactaaaatccagtcaag
gi|7 : AAACA--C---AC--------------------TGTAT-A-G-TGA-A--C-CTCCAG----GGCCA-GCC-AA-AAACA-A--TACATTAT-AACA-----A-ACTTC--TT-TA--TA--tgcagtttgtttggtaatatatctaatacaattttcattattttcctctcacagggtaatcaaatatcacttgtgattagcgaaaagtgttaattcattatatgtatgttcattatgagcatgtttaactg
gi|9 : tcttctttaagtaacagtA--C---AG--------------------T-TATTATA-TAAGA--C-CTCTAG----GGCCT-GTGTAA-AAACA-G--TT-ATTAT-A-TG-----AGACCTC---------TA--CAGCCTGCGT-AAA----AACAG---T-T-----TGA-C-AT-----T--------------------------AC-------------CACAC--TGTGT--T-------ATAGTC-AACAGAACATTTCATTATTTTCCTCACAT----AGGAGACTGAAT--ATGAT----TTCA-----TAAT-------AAGCtctgataaaatgtttaatatcgttttcttataggagagtaaatataactttgcaataagcttgaattcattatgagtgtgcttttctg
gi|15 : G--------------------T-TAT-A-G-TGA-A--C-CTCCAG----GGCAA-GTG-AATAAAC-----TTTGTTAT-A
gi|12 : atactg-A--C-CTTCGGTTCAGGTGA-GCT-AA-AAA---G--TTCATTAT-AACC-----AAACTTC--AT-TA--CA-----T-----C-AAA----TGTGG---T-Ttgtggtgcaattttcgttattttcatctcagggtaatgaattcgctataagcatgttgt
gi|3 : tttg-AAACA-C--TTCATCCT-TACCTGCAAACACTT---GCATA--TA--TAGT-----A-AAA----CACAG---T-TATAAATGAAC-CTCTAGGTC-C-AGGCAAAAGCAGTTC-GTAATAAC-------------CAATC--TTCAT--T-------ATATTC-AATAAA-ATGTTCATTATAATGCTCTTTT----AGG-----GAAT--A-GAT----ATCATTTTGAGAT-------AAGTGTAAATT-------T-------GTTATAA--GTGTTTTTGTTTTAAACATGTttctttattttcctctaatagaggaatgagatcattttgtattaagcata
gi|6 : -----ATACTTTAAGTGCA--TA--CAGT-------AAG----CAAA------TAAAG-TTA-C-TT-----TC-TCGGGC-----CCG--T-G-AAAAACAGTTTGTTTTTATCAAAC--TTTATAAT-------ATATCCGAAGAAA-TTTTTTGCAATATTC-TCTCAT----AAG----GGAATAAA-AATATTAATCAGTTCGCAAT-------AGGTGTAAATT-------T-------G
gi|4 : attccatTC--GT-CA--AA--CAAT-----A-AAG----CACA----T-TATAG-TGAAG-TT-----CCAT-ATTC-----AAG--C-G-AAAAAC----------------AG--TTCGT--T-------ATAACC-AAgtatca
gi|7 : atgaA--CAGT-------AAA----CACAC---TGTATAG-TGAAC-CT-----CC-A-GGGC-----CAG--C-C-AAAAACAATACATTATAA-CAAAC--TTCTT--T-------ATATCT-GATAAA-ATGTTTAATATCGTTTTCTTAT----AGG----AGAGT--A-AAT----ATAACTTTGCAAT-------AAGCTTGAATT-------actcattattcagttaaaacacagtaatggcgataaggcacagtttatagtggacagtacagatccagcgaaagacatattgttattgcaaaacttcactaaaatccagtcaag
gi|5 : tcttctttaagtaA--CAGT-----A-AAA----CACAT---T-TACAG-CGAAC-CT-----CC-G-GGAC-----CAA--T-G-A-TAAA-------------CATGCAGTTTGT--TTGGTAATATATCT-AATACA-ATTTTCATTATTTTCCTCTCAC----AGG----GTAATC-A-AAT----ATCA-CTTGTGATTAGCGAAAAGTGTTAATTCATTATAT-------GT-------ATG--TTCATTATGAGCATGTTTAAcattatgagtgtgcttttctg
gi|10 : ACAG---G-TAAAT-TAAAC-CT-----CC-T-GG-T-----CAA--C---AACAAA-------------AAAATAGTTTGT--T-------ATATCC-AATGAA-AGTTTTGTTATTTTCCTCACATGGTAAGG----TAAA------AT----ATCACTTTGCAAT-------AAGCATGAATT-------ctg
gi|15 : caattGG---T-TATAG-TGAAC-CT-----CC-A-GGGC-----AAG--T-G-AATAA-----------------AC--TTTGT--T-------ATATGT-GGTGCA-ATTTTCGTTATTTTCATCTCA-----GGG----T-AAT--G-AAT----------TCGCTAT-------AAGCATG---T-------T-------GT-------cat
gi|12 : atactATAAC-------------CAAAC--TTCAT--T-------ACATCA-AATGTG-GTTTTCTTTATTTTCCTCTAAT----AGA----GGAAT----GAG----ATCATTTTGTATT-------AAGCAT
gi|11 : tttgaccttcggttcaggtgagctaaaaagttcattATAAC-------------CAGTC--TTAAT--T-------ATGTCC-AGTAAA-ATTTAGGTTATTTT--TGTCAC----TGG----AGAAT--G-AAT----ATC----T-CAGT-------AGGCCTGAATT-------C-------GTTATAAGTGTG--TTTGTTATAATCATGTa
gi|2 : aagtttgttTTGT----------ATATCC-AATGCA-ATTTTTGTTATTTTCCTTTCAT----AAG-----AAAT--A-ACT----ATCACTTAGCAAT-------AAGTATGAATT-------CATTATAAGT-------ATG--TTT-TACTAAACATGttcactg
gi|17 : acttataaatggaggggaaaaaaatcaaaaagctagacataaatcatgtgtatcacattttctttgttacattttgcattgatctccacgcaaaatgtaacacttgagtttattactgctttgctacactatggttcataatggGT--T-------ATATCC-AATAAA-TTTCCCA-TATTATCTTCTCGT----AGG----GGGAT--A-GAT----ATCCCTTTGCAAG-------AAaacatgttcat
gi|13 : aatcaaatagg--T-------GTATCC-AGTAAA-ATTTTTGGTATTTTCCTCGTAT----AAG----GGGAT--G-AAT----ATCACTTTGCAGT-------AAGCAAGAATT-------T-------GT-------
gi|16 : TTCCCTCTCGT----AGG----GGGAT--A-AAT----ATCATGTCACAAT-------AAGTATGAATT-------T-------GTTATAAACATGT-TTTGTTATAAGCGTGTtataaatgtgttcattgtaagtttgttttactacata
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TATTATAACCAACCTCATTATTATTTATATCCAATAAAATTTTCATTATCACTTCACAATAAGTGGGAATTCATTATAAGCGTGTTCATTATGAGTGTGTTTTACTGT
Unaligned ( gi|18 ): ACCTTCGGTTCAGGTGAGCTAAAAATAGCTTATTCTTCAAACTTTACTAGCATGAATT
Unaligned ( gi|19 ): TCTCTGAGCTTTCGGCTCAGGTGAGCTAAAAAGGGTATACCACCAAACTCCAACAT
Unaligned ( gi|20 ): ATAAGTGGTCATTCATCATAAGCATGTTTACTATAAATGTGTTTTTATT
Unaligned ( gi|21 ): CTTTTTCCTTCGGCTCAGGTGAGCTAAAAAGGGCGTTCAGTATGA
Unaligned ( gi|22 ): GGTAAACAGCTCAGCAATAGCTGTTTTATGGATA
Unaligned ( gi|23 ): TTTCCTTCGGCTCAGGTGAGCTAAAAA
Alignments
lowQualScore : 11 111 22 1 444444444 44444444444444444444 2222 222 11 3333333 1 333 1 2222 1 111 111 222222 4444444444444444444444444444444444 11 111 111 1111
lowQualScore : 77 7 88 0 555 00 1 0 3 7 99 666666666 88888888888888888888 1111 333 99 0 5555555 1 2 111 3 8888 3 2 0 88 3 777 1 8 555 99 5 666666 1 4 2 5 0 2 4 0000000000000000000000000000000000 1 00 1 33 9999999 9999999 2 0 2 0 33 1 66 5555 9999999 2 333 888 0000 0
lowQualScore : .. . .. . ... .. . . . . .. ......... .................... .... ... .. . ....... . . ... . .... . . . .. . ... . . ... .. . ...... . . . . . . . .................................. . .. . .. ....... ....... . . . . .. . .. .... ....... . ... ... .... .
lowQualScore : 77 3 33 7 000 00 0 7 3 3 00 777777777 00000000000000000000 7777 333 33 7 7777777 0 0 000 3 3333 3 5 2 55 2 555 2 0 000 22 7 444444 1 4 4 0 1 8 5 9999999999999999999999999999999999 5 00 0 99 3333333 3333333 9 1 9 5 77 7 33 7777 3333333 5 222 777 6666 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACCAAA-CTTTATTAT-------AAATACAGTAA-------AA--CAC---GG-TTATAGTGAA-C--TCCAGGGCCAGCGA---AAAACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG-AATAAC-------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCACTT-C-----GCAATAAGCGTGAATTCGTTATAA--GTG-TGTTCGTT----ATAAGCGTGTTTAA
Reference ( family-514 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGGTACAGTAAAACACNGTTATAGTGAA--CCTCCAGGTCCA-GCGAAAAACANTTCGTTATAACCAAA-CTTCTTTAT-------AAATACAGTAA-------AA--CAC---AG-TTATAGTGAA-C--TCCAGGGCCAGCGA---AAAACAGTTCGTTATAACCAAACTTCGTTATACANTAAAACACAGTTAT-A-GTGA-ACCTCCAG----GGCCAGCG-AAAAACAGTTCGTTATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG-AATAAC-------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCACTT-T-----GCAATAAGCGTGAATTTGTTATAA--ATG-T-TTTGTT----ATAAGCATGTTTAA
gi|1 : TTGTAGTACAGAAAAACACGGTTATAATACA--CTTTGATGACCA--CGAAAAACAGGTCATCATAACCAAA-CTTTTTTAT-------AAATACAGTAA-------AA--CAT---GG-TTATCGTGAA-C--TCCAGGGCCAGCGA---AAAACAATTCATTGTAACCAAACTTTGTTATACATTAAAACACAGTTAT-A-GTGA-ACCTCCAG----GGCCAGCG-AAAAACAATTCATCATAACC---ATAC-TTTGT-TA--TA-CAGTT-----AAACACGGT-TATAG-TGAACCTTCTGGGCCAG------------CG-AATAAC-------------CAAAC--TTTGT--T-------AT-------ATCC-AATAGACT-TTTTGTTATTTTCCTCTCATAG--GTGAAT--AGAT----GTCACCT-T-----GCAATAAGCATGAATTTGT-------GTG---TTTGTG----ATAATCATGTGTAA
gi|10 : gattgaagaagatgcagggatttgatataaagtatcagaaattcttgaatttaaggaaaaACAGG-TAAAT-TAAACCTCCTGG-TCAA------------C--AACAAA-------------AAAATAGTTTGT--T-------AT-------ATCC-AATGAAAG-TTTTGTTATTTTCCTCACATGGTAAGGTA---AAAT----ATCACTT-T-----GCAATAAGCATGAATT
gi|11 : caattATAAC-------------CAGTC--TTAAT--T-------AT-------GTCC-AGTAAAAT-TTAGGTTATTTT--TGTCACTG--GAGAAT--GAAT----AT--CT---------CAGTAGGCCTGAATTCGTTATAA--GTG-TGTTTGTT----ATAATCATGTTTcat
gi|12 : aagtttgtt-ACCTTCGGTTCAGGTGAGCT-AAAAA--GTTCATTATAACC---AAAC-TTCAT-TA--CA----TC-----AAATGTGGT-Tcactg
gi|12 : tttgATAAC-------------CAAAC--TTCAT--T-------AC-------ATCA-AATGTGGT-TTTCTTTATTTTCCTCTAATAG--AGGAAT--GAG-----ATCATTT-T-----GTATTAAGCATttctttattttcctctaatagaggaatgagatcattttgtattaagcata
gi|13 : tttgaccttcggttcaggtgagctaaaaagttcatt--T-------GT-------ATCC-AGTAAAAT-TTTTGGTATTTTCCTCGTATAA--GGGGAT--GAAT----ATCACTT-T-----GCAGTAAGCAAGAATTTGTTATAA--ATG-TGTTCATT----GTAAGTTTGTTTa
gi|14 : ATAAC-------------CAA-C--CTCAT--T-------ATTATTTATATCC-AATAAAAT-TTTCAT-----------------------------T----ATCACTT-C-----ACAATAAGTGGGAATTCATTATAA--GCG-TGTTCATT----ATGAGTGTGTTTtactacata
gi|15 : tattGT-TATAG-TGAACCTCCAGGGCAAG------------TG-AATAA-----------------AC--TTTGT--T-------AT-------ATGT-GGTGCAAT-TTTCGTTATTTTCATCTC--AG--GGTAAT--GAAT-----TCGCT-----------ATAAGCATG---TTGTtactgt
gi|16 : atactgTTCCCTCTCGTAG--GGGGAT--AAAT----ATCATGT-C-----ACAATAAGTATGAATTTGTTATAAACATG-T-TTTGTT----ATAAGCGTGTT
gi|17 : GT--T-------AT-------ATCC-AATAAA-T-TTCCCATATTATCTTCTCGTAG--GGGGAT--AGAT----ATCCCTT-T-----GCAAGAAatactg
gi|2 : aatcaaatagg--T-------AT-------ATCC-AATGCAAT-TTTTGTTATTTTCCTTTCATAA--GA-AAT--AACT----ATCACTT-A-----GCAATAAGTATGAATTCATTATAAGTATG-T-TTTACTAAACATGAACATGTTCA
gi|3 : acttataaatggaggggaaaaaaatcaaaaagctagacataaatcatgtgtatcacattttctttgttacattttgcattgatctccacgcaaaatgtaacacttgagtttattactgctttgctacactatggttcataatggttgAAACACTTCATCCTTACCTGCAAACACTTGCATA--TA-TAGTA-----AAACACAGT-TATAAATGAACCTCTAGGTCCAGGCAAAAGCAGTTCGTAATAAC-------------CAATC--TTCAT--T-------AT-------ATTC-AATAAAAT-GTTCATTATAATGCTCTTTTAG--GG-AAT--AGAT----ATCATTT-T-----GAGATAAGTGTAAATTTGTTATAA--GTGTT-TTTGTT----TTAAACATGTt
gi|4 : ACAATAAAGCACA-TTATAGTGAA--GTTCCATATTCAAGCGAAAAACAGTTCGTTATAACCAAA-C-TCATTATTCAGTTAAAACACAGTAATGGCGATAAGGCAC---AGTTTATAGTGGA-CAGTACAGATCCAGCGA---AAGACATATTGTTATTGCAAAACTT-------CACTAAAATCCAGTCA
gi|5 : atgatcgtcaaA-CAGTA-----AAACACATT-TACAG-CGAACCTCCGGGACCAA------------TG-A-TAAA-------------CATGCAGTTTGT--TTGGTAATAT-------ATCT-AATACAAT-TTTCATTATTTTCCTCTCACAG--GGTAATC-AAAT----ATCACTTGTGATTAGCGAAAAGTGTTAATTCATTATAT--GTA-TGTTCATT----ATGAGCATGTTTAAag
gi|6 : A--TA-CAGT------AAGCAAA---TAAAG-TTACTTTCTCGGGCCCG------------TG-AAAAACAGTTTGTTTTTATCAAAC--TTTATAAT-------AT-------ATCCGAAGAAATT-TTTTGCAATATTC-TCTCATAA--GGGAATAAAAATATTAATCAGTT-C-----GCAATAGGTGTAAATTTGGTATctg
gi|7 : attccatatactttaagtgcC-TTCTT-TAAGTAACAGT------AAACACACTGTATAG-TGAACCTCCAGGGCCAG------------CC-AAAAACAATACATTATAA-CAAAC--TTCTT--T-------AT-------ATCT-GATAAAAT-GTTTAATATCGTTTTCTTATAG--GAGAGT--AAAT----ATAACTT-T-----GCAATAAGCTTGAATTCATTATGA--GTG-T-ca
gi|8 : tTTATGATATAGTAAAACGTTGTTATAG-GAAACCCCCCAGAGCCG-GTGAAAAACATTTCATTATGATTAAAACTTTATTAT-------G--TACAGTAA-------AA--CACTGTAA-TTATAGTGAACC--TCCAGGGATAGCTAAATAAAAC-TTTTGTTATAAACTAACTTCATTTT--ATCAAAA-ACAGTTgcttttctg
gi|9 : ACAGTTATTATATAAGACCTCTAG----GGCCTGTGTAAAAACAGTT-ATTATA-TG---AGAC-CTC-------TA-CAGCCTGCGTAAAAACAGT-T-----TGA--------------------------C---ATTAC-------------CACAC--TGTGT--T-------AT-------AGTC-AACAGAACATTTCATTATTTTCCTCACATAG--GAGACT--GAAT----ATGATTT-C-----ATAATAAGC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACCTTCGGTTCAGGTGAGCTAAAAATAGCTTATTCTTCAAACTTTACTAGCATGAATT
Unaligned ( gi|19 ): TCTCTGAGCTTTCGGCTCAGGTGAGCTAAAAAGGGTATACCACCAAACTCCAACAT
Unaligned ( gi|20 ): ATAAGTGGTCATTCATCATAAGCATGTTTACTATAAATGTGTTTTTATT
Unaligned ( gi|21 ): CTTTTTCCTTCGGCTCAGGTGAGCTAAAAAGGGCGTTCAGTATGA
Unaligned ( gi|22 ): GGTAAACAGCTCAGCAATAGCTGTTTTATGGATA
Unaligned ( gi|23 ): TTTCCTTCGGCTCAGGTGAGCTAAAAA
Alignments
lowQualScore : 11 11 222 1 55555555 5555555555555555555 2222 222 222222222 1 1 1 1 2222 1 111 111 222222 4444444444444444444444444444444444 11
lowQualScore : 0 00 7 88 1 000 0 3 7 00000000 0000000000000000000 1111 333 7 0 111111111 2 5 5 3 0 8888 3 2 0 2 3 777 1 8 555 99 5 666666 1 4 2 5 0 2 4 0000000000000000000000000000000000 1 00 1 33 9999999 9999999 2 0 2 0 33 1 66 5555 777777 0 2 1 4 4 5 0 3
lowQualScore : . .. . .. . ... . . . ........ ................... .... ... . . ......... . . . . . .... . . . . . ... . . ... .. . ...... . . . . . . . .................................. . .. . .. ....... ....... . . . . .. . .. .... ...... . . . . . . . .
lowQualScore : 7 33 3 33 0 777 7 3 3 77777777 3333333333333333333 7777 333 3 7 333333333 0 5 5 3 7 3333 3 5 2 5 2 555 2 0 000 22 7 444444 1 4 4 0 1 8 5 9999999999999999999999999999999999 5 00 0 99 3333333 3333333 9 1 9 5 77 7 33 7777 777777 8 5 8 4 2 0 2 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACC-AAACTTTATTAT-------AAATACAGTAA-------AA--CACGGT--TTATAGTGAA-C--TCCAGGGCCAGCGA---AAAACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG-AATAAC-------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
Reference ( family-514 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACC-AAACTTTATTAT-------AAATACAGTAA-------AA--CACGG---TTATAGTGAA-C--TCCAGGGCCAGCGA---AAAACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG-AATAAC-------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
gi|1 : TTGTAGTACAGAAAAACACGGTTATAATACA--CTTTGATGACCA--CGAAAAACAGGTCATCATAACC-AAACTTTTTTAT-------AAATACAGTAA-------AA--CATGG---TTATCGTGAA-C--TCCAGGGCCAGCGA---AAAACAATTCATTGTAACCAAACTTTGTTATACATTAAAACACAGTTA-TA-GTGA-ACCTCCAG----GGCCAGCG-AAAAACAATTCATCATAACC---ATAC-TTTGT-TA--TA-CAGTT-----AAACACGGT-TATAG-TGAACCTTCTGGGCCAG------------CG-AATAAC-------------CAAAC--TTTGT--T-------AT-------ATCC-AATAGACT-TTTTGTTATTTTCCTCTCATAG--GTGAAT--AGAT----GTCAC------CTTGCAATAAGCATGAATTT-------GTGTG-TTTGTGA-TAATCATGTGTAA
gi|10 : gattgaagaagatgcagggatttgatataaagtatcagaaattcttgaatttaaggaaaaACAGG-TAAAT-TAAACCTCCTGG-TCAA------------C--AACAAA-------------AAAATAGTTTGT--T-------AT-------ATCC-AATGAAAG-TTTTGTTATTTTCCTCACATGGTAAGGTA---AAAT----ATCAC------TTTGCAATAAGCATGAATTCAT
gi|11 : caattATAAC-------------CAGTC--TTAAT--T-------AT-------GTCC-AGTAAAAT-TTAGGTTATTTT--TGTCACTG--GAGAAT--GAAT----ATC---------TC--AGTAGGCCTGAATTCGTTATAAGTGTG-TTTGTTA-TAATCATGTTT
gi|12 : aagtttgtt-ACCTTCGGTTCAGGTGAGCT-AAAAA--GTTCATTATAACC---AAAC-TTCAT-TA--CA----TC-----AAATGTGGT-Tcactg
gi|12 : tttgATAAC-------------CAAAC--TTCAT--T-------AC-------ATCA-AATGTGGT-TTTCTTTATTTTCCTCTAATAG--AGGAAT--GAG-----ATCAT------TTTGTATTAAGCATttctttattttcctctaatagaggaatgagatcattttgtattaagcata
gi|13 : tttgaccttcggttcaggtgagctaaaaagttcatt--T-------GT-------ATCC-AGTAAAAT-TTTTGGTATTTTCCTCGTATAA--GGGGAT--GAAT----ATCAC------TTTGCAGTAAGCAAGAATTTGTTATAAATGTG-TTCATTG-TAAGTTTGTTTa
gi|14 : ATAAC-------------CAA-C--CTCAT--T-------ATTATTTATATCC-AATAAAAT-TTTCATTAT---------------------------------CAC------TTCACAATAAGTGGGAATTCATTATAAGCGTG-TTCATTA-TGAGTGTGTTTtactacata
gi|15 : tattGT-TATAG-TGAACCTCCAGGGCAAG------------TG-AATAA-----------------AC--TTTGT--T-------AT-------ATGT-GGTGCAAT-TTTCGTTATTTTCATCTC--AG--GGTAAT--GAA----------------TTCGCTATAAGCATGtactgt
gi|16 : atactgTTCCCTCTCGTAG--GGGGAT--AAAT----ATCAT------GTCACAATAAGTATGAATTTGTTATAAACATGTTTTGTTA-TAAGCGTGTTttgt
gi|17 : GT--T-------AT-------ATCC-AAT-AAAT-TTCCCATATTATCTTCTCGTAG--GGGGAT--AGAT----ATCCC------TTTGCAAGAAatactg
gi|2 : aatcaaatagg--T-------AT-------ATCC-AATGCAAT-TTTTGTTATTTTCCTTTCATAA--GA-AAT--AACT----ATCAC------TTAGCAATAAGTATGAATTCATTATAAGTATG-TT--TTACTAAACATG
gi|3 : acttataaatggaggggaaaaaaatcaaaaagctagacataaatcatgtgtatcacattttctttgttacattttgcattgatctccacgcaaaatgtaacacttgagtttattactgctttgctacactatggttcataatggttgAAACACTTCATCCTTACCTGCAAACACTTGCATA--TA-TAGTA-----AAACACAGT-TATAAATGAACCTCTAGGTCCAGGCAAAAGCAGTTCGTAATAAC-------------CAATC--TTCAT--T-------AT-------ATTC-AATAAAAT-GTTCATTATAATGCTCTTTTAG--GG-AAT--AGAT----ATCAT------TTTGAGATAAGTGTAAATTTGTTATAAGTGTT-TTTGTTT-TAAACATGTaacatgttcat
gi|4 : ACAATAAAGCACA-TTATAGTGAA--GTTCCATATTCAAGCGAAAAACAGTTCGTTATAACC-AAAC-TCATTATTCAGTTAAAACACAGTAATGGCGATAAGGCACAGT--TTATAGTGGA-CAGTACAGATCCAGCGA---AAGACATATTGTTATTGCAAAAC-----T-T-CACTAAAATCCAGTCA
gi|5 : atgatcgtcaaA-CAGTA-----AAACACATT-TACAG-CGAACCTCCGGGACCAA------------TG-A-TAAA-------------CATGCAGTTTGT--TTGGTAATAT-------ATCT-AATACAAT-TTTCATTATTTTCCTCTCACAG--GGTAATC-AAAT----ATCACTTGTGATTAGCGAAAAGTGTTAATTCATTATATGTATG-TTCATTA-TGAGCATGTTTAAag
gi|6 : A--TA-CAGT------AAGCAAA---TAAAG-TTACTTTCTCGGGCCCG------------TG-AAAAACAGTTTGTTTTTATCAAAC--TTTATAAT-------AT-------ATCCGAAGAAATT-TTTTGCAATATTC-TCTCATAA--GGGAATAAAAATATTAATCAG------TTCGCAATAGGTGTAAATTTGGTATctg
gi|7 : attccatatactttaagtgcC-TTCTT-TAAGTAACAGT------AAACACACTGTATAG-TGAACCTCCAGGGCCAG------------CC-AAAAACAATACATTATAA-CAAAC--TTCTT--T-------AT-------ATCT-GATAAAAT-GTTTAATATCGTTTTCTTATAG--GAGAGT--AAAT----ATAAC------TTTGCAATAAGCTTGAATTCATTATGAGTGTG-CTca
gi|8 : tTTATGATATAGTAAAACGTTGTTATAG-GAAACCCCCCAGAGCCG-GTGAAAAACATTTCATTATGATTAAAACTTTATTAT---------GTACAGTAA-------AA--CACTGTAATTATAGTGAACC--TCCAGGGATAGCTAAATAAAAC-TTTTGTTATAAACTAACTTCATT-T-TATCAAAA-ACAGTTtttctg
gi|9 : ACAGTTATTATATAAGACCTCTAG----GGCCTGTGTAAAAACAGTT-ATTATA-TG---AGAC-CTC-------TA-CAGCCTGCGTAAAAACAGT-T-----TGA--------------------------C---ATTAC-------------CACAC--TGTGT--T-------AT-------AGTC-AACAGAACATTTCATTATTTTCCTCACATAG--GAGACT--GAAT----ATGAT------TTCATAATAAGC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACCTTCGGTTCAGGTGAGCTAAAAATAGCTTATTCTTCAAACTTTACTAGCATGAATT
Unaligned ( gi|19 ): TCTCTGAGCTTTCGGCTCAGGTGAGCTAAAAAGGGTATACCACCAAACTCCAACAT
Unaligned ( gi|20 ): ATAAGTGGTCATTCATCATAAGCATGTTTACTATAAATGTGTTTTTATT
Unaligned ( gi|21 ): CTTTTTCCTTCGGCTCAGGTGAGCTAAAAAGGGCGTTCAGTATGA
Unaligned ( gi|22 ): GGTAAACAGCTCAGCAATAGCTGTTTTATGGATA
Unaligned ( gi|23 ): TTTCCTTCGGCTCAGGTGAGCTAAAAA
Alignments
lowQualScore : 11 11 222 1 4444444444 3333333 11 11 33 222 222222222 1 1 1 1 2222 1 111 111 222222 4444444444444444444444444444444444 11
lowQualScore : 0 00 7 88 1 000 0 3 1 9999999999 2222222 33 3 88 7 11 333 7 0 111111111 2 5 5 3 0 8888 3 2 0 2 3 777 1 8 555 99 5 666666 1 4 2 5 0 2 4 0000000000000000000000000000000000 1 00 1 33 9999999 9999999 2 0 2 0 33 1 66 5555 777777 0 2 1 4 4 5 0 3
lowQualScore : . .. . .. . ... . . . .......... ....... .. . .. . .. ... . . ......... . . . . . .... . . . . . ... . . ... .. . ...... . . . . . . . .................................. . .. . .. ....... ....... . . . . .. . .. .... ...... . . . . . . . .
lowQualScore : 7 33 3 33 0 777 0 2 2 5555555555 5555555 88 7 33 3 77 333 3 7 333333333 0 5 5 3 7 3333 3 5 2 5 2 555 2 0 000 22 7 444444 1 4 4 0 1 8 5 9999999999999999999999999999999999 5 00 0 99 3333333 3333333 9 1 9 5 77 7 33 7777 777777 8 5 8 4 2 0 2 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACCAAA-CTTTATTAT-------AAATACAGTAA-------AA--CACGGT--TTATAGTGAAC--TCCAGGGCCAGCGAAA---AACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG-AATAAC-------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
Reference ( family-514 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACCAAA-CTTTATTAT-------AAATACAGTAA-------AA--CACGGT--TTATAGTGAAC--TCCAGGGCCAGCGAAA---AACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG-AATAAC-------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
gi|1 : TTGTAGTACAGAAAAACACGGTTATAATACA--CTTTGATGACCA--CGAAAAACAGGTCATCATAACCAAA-CTTTTTTAT-------AAATACAGTAA-------AA--CATGGT--T-ATCGTGAAC--TCCAGGGCCAGCGAAA---AACAATTCATTGTAACCAAACTTTGTTATACATTAAAACACAGTTA-TA-GTGA-ACCTCCAG----GGCCAGCG-AAAAACAATTCATCATAACC---ATAC-TTTGT-TA--TA-CAGTT-----AAACACGGT-TATAG-TGAACCTTCTGGGCCAG------------CG-AATAAC-------------CAAAC--TTTGT--T-------AT-------ATCC-AATAGACT-TTTTGTTATTTTCCTCTCATAG--GTGAAT--AGAT----GTCAC------CTTGCAATAAGCATGAATTT-------GTGTG-TTTGTGA-TAATCATGTGTAA
gi|10 : gattgaagaagatgcagggatttgatataaagtatcagaaattcttgaatttaaggaaaaACAGG-TAAAT-TAAACCTCCTGG-TCAA------------C--AACAAA-------------AAAATAGTTTGT--T-------AT-------ATCC-AATGAAAG-TTTTGTTATTTTCCTCACATGGTAAGGTA---AAAT----ATCAC------TTTGCAATAAGCATGAATTCAT
gi|11 : caattAGTTTGTTATAACCAGT-CTTAATTAT---------GTCCAGTAA-------AA--
gi|11 : aATAAC-------------CAGTC--TTAAT--T-------AT-------GTCC-AGTAAAAT-TTAGGTTATTTT--TGTCACTG--GAGAAT--GAAT----ATC---------TC--AGTAGGCCTGAATTCGTTATAAGTGTG-TTTGTTA-TAATCATGTTTtttaggttatttttgtcactggagaatgaatatctcagtaggcctgaattcgttataagtgtgtttgttataatcatgtttcactg
gi|12 : aagtttgtt-ACCTTCGGTTCAGGTGAGCT-AAAAA--GTTCATTATAACC---AAAC-TTCAT-TA--CA----TC-----AAATGTGGT-Tcactg
gi|12 : tttgATAAC-------------CAAAC--TTCAT--T-------AC-------ATCA-AATGTGGT-TTTCTTTATTTTCCTCTAATAG--AGGAAT--GAG-----ATCAT------TTTGTATTAAGCATttctttattttcctctaatagaggaatgagatcattttgtattaagcata
gi|13 : tttgaccttcggttcaggtgagctaaaaagttcatt--T-------GT-------ATCC-AGTAAAAT-TTTTGGTATTTTCCTCGTATAA--GGGGAT--GAAT----ATCAC------TTTGCAGTAAGCAAGAATTTGTTATAAATGTG-TTCATTG-TAAGTTTGTTTa
gi|14 : ATAAC-------------CAA-C--CTCAT--T-------ATTATTTATATCC-AATAAAAT-TTTCATTAT---------------------------------CAC------TTCACAATAAGTGGGAATTCATTATAAGCGTG-TTCATTA-TGAGTGTGTTTtactacata
gi|15 : tattGT-TATAG-TGAACCTCCAGGGCAAG------------TG-AATAA-----------------AC--TTTGT--T-------AT-------ATGT-GGTGCAAT-TTTCGTTATTTTCATCTC--AG--GGTAAT--GAA----------------TTCGCTATAAGCATGtactgt
gi|16 : atactgTTCCCTCTCGTAG--GGGGAT--AAAT----ATCAT------GTCACAATAAGTATGAATTTGTTATAAACATGTTTTGTTA-TAAGCGTGTTttgt
gi|17 : GT--T-------AT-------ATCC-AAT-AAAT-TTCCCATATTATCTTCTCGTAG--GGGGAT--AGAT----ATCCC------TTTGCAAGAAatactg
gi|2 : aatcaaatagg--T-------AT-------ATCC-AATGCAAT-TTTTGTTATTTTCCTTTCATAA--GA-AAT--AACT----ATCAC------TTAGCAATAAGTATGAATTCATTATAAGTATG-TT--TTACTAAACATG
gi|3 : acttataaatggaggggaaaaaaatcaaaaagctagacataaatcatgtgtatcacattttctttgttacattttgcattgatctccacgcaaaatgtaacacttgagtttattactgctttgctacactatggttcataatggttgAAACACTTCATCCTTACCTGCAAACACTTGCATA--TA-TAGTA-----AAACACAGT-TATAAATGAACCTCTAGGTCCAGGCAAAAGCAGTTCGTAATAAC-------------CAATC--TTCAT--T-------AT-------ATTC-AATAAAAT-GTTCATTATAATGCTCTTTTAG--GG-AAT--AGAT----ATCAT------TTTGAGATAAGTGTAAATTTGTTATAAGTGTT-TTTGTTT-TAAACATGTaacatgttcat
gi|4 : ACAATAAAGCACA-TTATAGTGAA--GTTCCATATTCAAGCGAAAAACAGTTCGTTATAACCAAA-C-TCATTATTCAGTTAAAACACAGTAATGGCGATAAGGCACAGT--TTATAGTGGACAGTACAGATCCAGCGAAA---GACATATTGTTATTGCAAAAC-----T-T-CACTAAAATCCAGTCA
gi|5 : atgatcgtcaaA-CAGTA-----AAACACATT-TACAG-CGAACCTCCGGGACCAA------------TG-A-TAAA-------------CATGCAGTTTGT--TTGGTAATAT-------ATCT-AATACAAT-TTTCATTATTTTCCTCTCACAG--GGTAATC-AAAT----ATCACTTGTGATTAGCGAAAAGTGTTAATTCATTATATGTATG-TTCATTA-TGAGCATGTTTAAag
gi|6 : A--TA-CAGT------AAGCAAA---TAAAG-TTACTTTCTCGGGCCCG------------TG-AAAAACAGTTTGTTTTTATCAAAC--TTTATAAT-------AT-------ATCCGAAGAAATT-TTTTGCAATATTC-TCTCATAA--GGGAATAAAAATATTAATCAG------TTCGCAATAGGTGTAAATTTGGTATctg
gi|7 : attccatatactttaagtgcC-TTCTT-TAAGTAACAGT------AAACACACTGTATAG-TGAACCTCCAGGGCCAG------------CC-AAAAACAATACATTATAA-CAAAC--TTCTT--T-------AT-------ATCT-GATAAAAT-GTTTAATATCGTTTTCTTATAG--GAGAGT--AAAT----ATAAC------TTTGCAATAAGCTTGAATTCATTATGAGTGTG-CTca
gi|8 : tTTATGATATAGTAAAACGTTGTTATAG-GAAACCCCCCAGAGCCG-GTGAAAAACATTTCATTATGATTAAAACTTTATTAT-------G--TACAGTAA-------AA--CACTGTAATTATAGTGAACC-TCCAGGGATAGCTAAATAAAAC-TTTTGTTATAAACTAACTTCATT-T-TATCAAAA-ACAGTTtttctg
gi|9 : ACAGTTATTATATAAGACCTCTAG----GGCCTGTGTAAAAACAGTT-ATTATA-TG---AGAC-CTC-------TA-CAGCCTGCGTAAAAACAGT-T-----TGA--------------------------C---ATTAC-------------CACAC--TGTGT--T-------AT-------AGTC-AACAGAACATTTCATTATTTTCCTCACATAG--GAGACT--GAAT----ATGAT------TTCATAATAAGC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACCTTCGGTTCAGGTGAGCTAAAAATAGCTTATTCTTCAAACTTTACTAGCATGAATT
Unaligned ( gi|19 ): TCTCTGAGCTTTCGGCTCAGGTGAGCTAAAAAGGGTATACCACCAAACTCCAACAT
Unaligned ( gi|20 ): ATAAGTGGTCATTCATCATAAGCATGTTTACTATAAATGTGTTTTTATT
Unaligned ( gi|21 ): CTTTTTCCTTCGGCTCAGGTGAGCTAAAAAGGGCGTTCAGTATGA
Unaligned ( gi|22 ): GGTAAACAGCTCAGCAATAGCTGTTTTATGGATA
Unaligned ( gi|23 ): TTTCCTTCGGCTCAGGTGAGCTAAAAA
Alignments
lowQualScore : 11 11 222 1 4444444444 3333333 11 11 33 222 222222222 1 1 1 1 2222 1 111 111 222222 4444444444444444444444444444444444 11
lowQualScore : 0 00 7 88 1 000 0 3 1 9999999999 2222222 33 3 88 7 11 333 7 0 111111111 2 5 5 3 0 8888 3 2 0 2 3 777 1 8 555 99 5 666666 1 4 2 5 0 2 4 0000000000000000000000000000000000 1 00 1 33 9999999 9999999 2 0 2 0 33 1 66 5555 777777 0 2 1 4 4 5 0 3
lowQualScore : . .. . .. . ... . . . .......... ....... .. . .. . .. ... . . ......... . . . . . .... . . . . . ... . . ... .. . ...... . . . . . . . .................................. . .. . .. ....... ....... . . . . .. . .. .... ...... . . . . . . . .
lowQualScore : 7 33 3 33 0 777 0 2 2 5555555555 5555555 88 7 33 3 77 333 3 7 333333333 0 5 5 3 7 3333 3 5 2 5 2 555 2 0 000 22 7 444444 1 4 4 0 1 8 5 9999999999999999999999999999999999 5 00 0 99 3333333 3333333 9 1 9 5 77 7 33 7777 777777 8 5 8 4 2 0 2 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACCAAA-CTTTATTAT-------AAATACAGTAA-------AA--CACGGT--TTATAGTGAAC--TCCAGGGCCAGCGAAA---AACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG-AATAAC-------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
Reference ( family-514 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACCAAA-CTTTATTAT-------AAATACAGTAA-------AA--CACGGT--TTATAGTGAAC--TCCAGGGCCAGCGAAA---AACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG-AATAAC-------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
gi|1 : TTGTAGTACAGAAAAACACGGTTATAATACA--CTTTGATGACCA--CGAAAAACAGGTCATCATAACCAAA-CTTTTTTAT-------AAATACAGTAA-------AA--CATGGT--T-ATCGTGAAC--TCCAGGGCCAGCGAAA---AACAATTCATTGTAACCAAACTTTGTTATACATTAAAACACAGTTA-TA-GTGA-ACCTCCAG----GGCCAGCG-AAAAACAATTCATCATAACC---ATAC-TTTGT-TA--TA-CAGTT-----AAACACGGT-TATAG-TGAACCTTCTGGGCCAG------------CG-AATAAC-------------CAAAC--TTTGT--T-------AT-------ATCC-AATAGACT-TTTTGTTATTTTCCTCTCATAG--GTGAAT--AGAT----GTCAC------CTTGCAATAAGCATGAATTT-------GTGTG-TTTGTGA-TAATCATGTGTAA
gi|10 : gattgaagaagatgcagggatttgatataaagtatcagaaattcttgaatttaaggaaaaACAGG-TAAAT-TAAACCTCCTGG-TCAA------------C--AACAAA-------------AAAATAGTTTGT--T-------AT-------ATCC-AATGAAAG-TTTTGTTATTTTCCTCACATGGTAAGGTA---AAAT----ATCAC------TTTGCAATAAGCATGAATTCAT
gi|11 : caattAGTTTGTTATAACCAGT-CTTAATTAT---------GTCCAGTAA-------AA--
gi|11 : aATAAC-------------CAGTC--TTAAT--T-------AT-------GTCC-AGTAAAAT-TTAGGTTATTTT--TGTCACTG--GAGAAT--GAAT----ATC---------TC--AGTAGGCCTGAATTCGTTATAAGTGTG-TTTGTTA-TAATCATGTTTtttaggttatttttgtcactggagaatgaatatctcagtaggcctgaattcgttataagtgtgtttgttataatcatgtttcactg
gi|12 : aagtttgtt-ACCTTCGGTTCAGGTGAGCT-AAAAA--GTTCATTATAACC---AAAC-TTCAT-TA--CA----TC-----AAATGTGGT-Tcactg
gi|12 : tttgATAAC-------------CAAAC--TTCAT--T-------AC-------ATCA-AATGTGGT-TTTCTTTATTTTCCTCTAATAG--AGGAAT--GAG-----ATCAT------TTTGTATTAAGCATttctttattttcctctaatagaggaatgagatcattttgtattaagcata
gi|13 : tttgaccttcggttcaggtgagctaaaaagttcatt--T-------GT-------ATCC-AGTAAAAT-TTTTGGTATTTTCCTCGTATAA--GGGGAT--GAAT----ATCAC------TTTGCAGTAAGCAAGAATTTGTTATAAATGTG-TTCATTG-TAAGTTTGTTTa
gi|14 : ATAAC-------------CAA-C--CTCAT--T-------ATTATTTATATCC-AATAAAAT-TTTCATTAT---------------------------------CAC------TTCACAATAAGTGGGAATTCATTATAAGCGTG-TTCATTA-TGAGTGTGTTTtactacata
gi|15 : tattGT-TATAG-TGAACCTCCAGGGCAAG------------TG-AATAA-----------------AC--TTTGT--T-------AT-------ATGT-GGTGCAAT-TTTCGTTATTTTCATCTC--AG--GGTAAT--GAA----------------TTCGCTATAAGCATGtactgt
gi|16 : atactgTTCCCTCTCGTAG--GGGGAT--AAAT----ATCAT------GTCACAATAAGTATGAATTTGTTATAAACATGTTTTGTTA-TAAGCGTGTTttgt
gi|17 : GT--T-------AT-------ATCC-AAT-AAAT-TTCCCATATTATCTTCTCGTAG--GGGGAT--AGAT----ATCCC------TTTGCAAGAAatactg
gi|2 : aatcaaatagg--T-------AT-------ATCC-AATGCAAT-TTTTGTTATTTTCCTTTCATAA--GA-AAT--AACT----ATCAC------TTAGCAATAAGTATGAATTCATTATAAGTATG-TT--TTACTAAACATG
gi|3 : acttataaatggaggggaaaaaaatcaaaaagctagacataaatcatgtgtatcacattttctttgttacattttgcattgatctccacgcaaaatgtaacacttgagtttattactgctttgctacactatggttcataatggttgAAACACTTCATCCTTACCTGCAAACACTTGCATA--TA-TAGTA-----AAACACAGT-TATAAATGAACCTCTAGGTCCAGGCAAAAGCAGTTCGTAATAAC-------------CAATC--TTCAT--T-------AT-------ATTC-AATAAAAT-GTTCATTATAATGCTCTTTTAG--GG-AAT--AGAT----ATCAT------TTTGAGATAAGTGTAAATTTGTTATAAGTGTT-TTTGTTT-TAAACATGTaacatgttcat
gi|4 : ACAATAAAGCACA-TTATAGTGAA--GTTCCATATTCAAGCGAAAAACAGTTCGTTATAACCAAA-C-TCATTATTCAGTTAAAACACAGTAATGGCGATAAGGCACAGT--TTATAGTGGACAGTACAGATCCAGCGAAA---GACATATTGTTATTGCAAAAC-----T-T-CACTAAAATCCAGTCA
gi|5 : atgatcgtcaaA-CAGTA-----AAACACATT-TACAG-CGAACCTCCGGGACCAA------------TG-A-TAAA-------------CATGCAGTTTGT--TTGGTAATAT-------ATCT-AATACAAT-TTTCATTATTTTCCTCTCACAG--GGTAATC-AAAT----ATCACTTGTGATTAGCGAAAAGTGTTAATTCATTATATGTATG-TTCATTA-TGAGCATGTTTAAag
gi|6 : A--TA-CAGT------AAGCAAA---TAAAG-TTACTTTCTCGGGCCCG------------TG-AAAAACAGTTTGTTTTTATCAAAC--TTTATAAT-------AT-------ATCCGAAGAAATT-TTTTGCAATATTC-TCTCATAA--GGGAATAAAAATATTAATCAG------TTCGCAATAGGTGTAAATTTGGTATctg
gi|7 : attccatatactttaagtgcC-TTCTT-TAAGTAACAGT------AAACACACTGTATAG-TGAACCTCCAGGGCCAG------------CC-AAAAACAATACATTATAA-CAAAC--TTCTT--T-------AT-------ATCT-GATAAAAT-GTTTAATATCGTTTTCTTATAG--GAGAGT--AAAT----ATAAC------TTTGCAATAAGCTTGAATTCATTATGAGTGTG-CTca
gi|8 : tTTATGATATAGTAAAACGTTGTTATAG-GAAACCCCCCAGAGCCG-GTGAAAAACATTTCATTATGATTAAAACTTTATTAT-------G--TACAGTAA-------AA--CACTGTAATTATAGTGAACC-TCCAGGGATAGCTAAATAAAAC-TTTTGTTATAAACTAACTTCATT-T-TATCAAAA-ACAGTTtttctg
gi|9 : ACAGTTATTATATAAGACCTCTAG----GGCCTGTGTAAAAACAGTT-ATTATA-TG---AGAC-CTC-------TA-CAGCCTGCGTAAAAACAGT-T-----TGA--------------------------C---ATTAC-------------CACAC--TGTGT--T-------AT-------AGTC-AACAGAACATTTCATTATTTTCCTCACATAG--GAGACT--GAAT----ATGAT------TTCATAATAAGC
blockSeqs : TG T AC T AAG A T A TCAGTTAAAA TGGCGAT GG A AA T AG TAA A TTCATTT T T T G TTCA T C C A TGC A A GCA AG A CTGCGT G G A A T G GCAAAAGCAGTTCGTAATAAC A AG T AA TGGTAAT TATTTAT G A TA G AA ATTA TTGTGA A A T T C A
blockSeqs : A . . G GG . T C G . . T . T C . . TT . . . . C C A . A . AT . . C G . T . A T TGAAAAACAGTTTGTTTTTAT T AG A . . . . . . G C . . C G . C . T
blockSeqs : . . T G . . . . . . G . TT . . A G . T . A A CCAAAAACAATACATTATAA A . C . . . . . . G . . . A G . C . G
blockSeqs : . . . . A G . C . G G CAACAAA A . C . . . . . . G . . . A A . T . G
blockSeqs : . . . T . A . C G TGAATAA T . T . . . . . . T . . . G G . T . A
blockSeqs : . . C . T . A . TGATAAA G . C . . . . . . G . . . A A . C . A
blockSeqs : G . . . . . CATTAC A . T . . . . . . G . . . A G . . . A
blockSeqs : . . A . T . . . . . . T . . . A A .
blockSeqs : A . C . . . . . . G . . . G G
blockSeqs : . . T . . . . . . G . . . G A
blockSeqs : . . . . . . G . . . G
blockSeqs : . . . . . . . . . . T
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : CGANAAA***************************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACCAAA-CTTTATTAT-------AAATACAGTAA-------AA--CACGGT--TTATAGTGAAC--TCCAGGGCCAGCGAAA---AACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG-AATAAC-------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACCAAA-CTTTATTAT-------AAATACAGTAA-------AA--CACGGT--TTATAGTGAAC--TCCAGGGCCAGCGAAA---AACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAGCGANAAA---------------------------CAAAC--TTCGT--T-------AT-------ATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACCTTCGGTTCAGGTGAGCTAAAAATAGCTTATTCTTCAAACTTTACTAGCATGAATT
Unaligned ( gi|19 ): TCTCTGAGCTTTCGGCTCAGGTGAGCTAAAAAGGGTATACCACCAAACTCCAACAT
Unaligned ( gi|20 ): ATAAGTGGTCATTCATCATAAGCATGTTTACTATAAATGTGTTTTTATT
Unaligned ( gi|21 ): CTTTTTCCTTCGGCTCAGGTGAGCTAAAAAGGGCGTTCAGTATGA
Unaligned ( gi|22 ): GGTAAACAGCTCAGCAATAGCTGTTTTATGGATA
Unaligned ( gi|23 ): TTTCCTTCGGCTCAGGTGAGCTAAAAA
Alignments
lowQualScore : 11 11 222 1 555555555 3333333 11 11 2222 222 222222222 1 1 1 1 2222 1 111 111 222222 4444444444444444444444444444444444444444444444444444444
lowQualScore : 0 00 7 88 1 000 0 3 1 111111111 2222222 33 3 88 7 1111 333 7 0 111111111 2 5 5 3 0 8888 3 2 0 2 3 777 1 8 555 99 5 666666 1 4 2 5 0 2 4 9999999999999999999999999999999999999999999999999999999 2 33 9999999 2 0 2 0 33 1 66 5555 777777 0 2 1 4 4 5 0 3
lowQualScore : . .. . .. . ... . . . ......... ....... .. . .. . .... ... . . ......... . . . . . .... . . . . . ... . . ... .. . ...... . . . . . . . ....................................................... . .. ....... . . . . .. . .. .... ...... . . . . . . . .
lowQualScore : 7 33 3 33 0 777 0 2 2 000000000 5555555 88 7 33 3 7777 333 3 7 333333333 0 5 5 3 7 3333 3 5 2 5 2 555 2 0 000 22 7 444444 1 4 4 0 1 8 5 2222222222222222222222222222222222222222222222222222222 1 99 3333333 9 1 9 5 77 7 33 7777 777777 8 5 8 4 2 0 2 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACC-AAACTTTATTAT-------AAGTACAGTAA-------AA--CACGGT--TTATAGTGAA-C--TCCAGGGCCAGCGA---AAAACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG--ATAANCA--------------A-------------AC--TTCGT--T-------ATATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
Reference ( family-514 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGTACAGTAAAACGCGGTTATAGTGAA--CTTCCATANCCG-GCGAAAAACAGTTCGTTATAACC-AAACTTTATTAT-------AAATACAGTAA-------AA--CACGGT--TTATAGTGAA-C--TCCAGGGCCAGCGA---AAAACATTTCGTTATAACCAAACTTCGTT-T-CATTAAAACACAGTTATTATGTGA-ACCTCCGG----GGCCAGCG-AAAAACAGTTCATCATAACC---AAAC-TTCGT-TA--TA-CAGTN-----AAACACAGT-TATAG-TGAACCTCCNGGGCCAG------------CG--ANAAACA--------------A-------------AC--TTCGT--T-------ATATCC-AATAAAAT-TTTCGTTATTTTCCTCTCATAG--GGGAAT--AAAT----ATCAC------TTCGCAATAAGCGTGAATTCGTTATAAGTGTG-TTCGTTA-TAAGCGTGTTTAA
gi|1 : TTGTAGTACAGAAAAACACGGTTATAATACA--CTTTGATGACCA--CGAAAAACAGGTCATCATAACC-AAACTTTTTTAT-------AAATACAGTAA-------AA--CATGGT--T-ATCGTGAA-C--TCCAGGGCCAGCGA---AAAACAATTCATTGTAACCAAACTTTGTTATACATTAAAACACAGTTA-TA-GTGA-ACCTCCAG----GGCCAGCG-AAAAACAATTCATCATAACC---ATAC-TTTGT-TA--TA-CAGTT-----AAACACGGT-TATAG-TGAACCTTCTGGGCCAG------------CGA-ATAACCA--------------A-------------AC--TTTGT--T-------ATATCC-AATAGACT-TTTTGTTATTTTCCTCTCATAG--GTGAAT--AGAT----GTCAC------CTTGCAATAAGCATGAATTT-------GTGTG-TTTGTGA-TAATCATGTGTAA
gi|10 : gattgaagaagatgcagggatttgatataaagtatcagaaattcttgaatttaaggaaaaACAGG-TAAAT-TAAACCTCCTGG-TCAA------------CA--ACAAAAA--------------A-------------ATAGTTTGT--T-------ATATCC-AATGAAAG-TTTTGTTATTTTCCTCACATGGTAAGGTA---AAAT----ATCAC------TTTGCAATAAGCATGAATTCAT
gi|11 : caattAGTTTGTTATAACC-AGTCTTAATTAT---------GTCCAGTAA-------AA--
gi|11 : a--ATAACCA--------------G-------------TC--TTAAT--T-------ATGTCC-AGTAAAAT-TTAGGTTATTTT--TGTCACTG--GAGAAT--GAAT----ATC---------TC--AGTAGGCCTGAATTCGTTATAAGTGTG-TTTGTTA-TAATCATGTTTtttaggttatttttgtcactggagaatgaatatctcagtaggcctgaattcgttataagtgtgtttgttataatcatgtttcactg
gi|12 : aagtttgtt-ACCTTCGGTTCAGGTGAGCT-AAAAA--GTTCATTATAACC---AAAC-TTCAT-TA--CA----TC-----AAATGTGGT-Tcactg
gi|12 : tttg--ATAACCA--------------A-------------AC--TTCAT--T-------ACATCA-AATGTGGT-TTTCTTTATTTTCCTCTAATAG--AGGAAT--GAG-----ATCAT------TTTGTATTAAGCATttctttattttcctctaatagaggaatgagatcattttgtattaagcata
gi|13 : tttgaccttcggttcaggtgagctaaaaagttcatt--T-------GTATCC-AGTAAAAT-TTTTGGTATTTTCCTCGTATAA--GGGGAT--GAAT----ATCAC------TTTGCAGTAAGCAAGAATTTGTTATAAATGTG-TTCATTG-TAAGTTTGTTTa
gi|14 : T--T-------ATATCC-AATAAAAT-TTTCATTAT---------------------------------CAC------TTCACAATAAGTGGGAATTCATTATAAGCGTG-TTCATTA-TGAGTGTGTTTtactacata
gi|15 : tattataaccaacctcattattatGT-TATAG-TGAACCTCCAGGGCAAG------------TG--A---ATA--------------A-------------AC--TTTGT--T-------ATATGT-GGTGCAAT-TTTCGTTATTTTCATCTC--AG--GGTAAT--GAA----------------TTCGCTATAAGCATGtactgt
gi|16 : atactgTTCCCTCTCGTAG--GGGGAT--AAAT----ATCAT------GTCACAATAAGTATGAATTTGTTATAAACATGTTTTGTTA-TAAGCGTGTTttgt
gi|17 : GT--T-------ATATCC-AAT-AAAT-TTCCCATATTATCTTCTCGTAG--GGGGAT--AGAT----ATCCC------TTTGCAAGAAatactg
gi|2 : aatcaaatagg--T-------ATATCC-AATGCAAT-TTTTGTTATTTTCCTTTCATAA--GA-AAT--AACT----ATCAC------TTAGCAATAAGTATGAATTCATTATAAGTATG-TT--TTACTAAACATG
gi|3 : acttataaatggaggggaaaaaaatcaaaaagctagacataaatcatgtgtatcacattttctttgttacattttgcattgatctccacgcaaaatgtaacacttgagtttattactgctttgctacactatggttcataatggttgAAACACTTCATCCTTACCTGCAAACACTTGCATA--TA-TAGTA-----AAACACAGT-TATAAATGAACCTCTAGGTCCAGGCAAAAGCAGTTCGTAATAACCA--------------A-------------TC--TTCAT--T-------ATATTC-AATAAAAT-GTTCATTATAATGCTCTTTTAG--GG-AAT--AGAT----ATCAT------TTTGAGATAAGTGTAAATTTGTTATAAGTGTT-TTTGTTT-TAAACATGTaacatgttcat
gi|4 : ACAATAAAGCACA-TTATAGTGAA--GTTCCATATTCAAGCGAAAAACAGTTCGTTATAACC-AAAC-TCATTATTCAGTTAAAACACAGTAATGGCGATAAGGCACAGT--TTATAGTGGA-CAGTACAGATCCAGCGA---AAGACATATTGTTATTGCAAAAC-----T-T-CACTAAAATCCAGTCA
gi|5 : atgatcgtcaaA-CAGTA-----AAACACATT-TACAG-CGAACCTCCGGGACCAA------------TG--ATAAACA--------------T-------------GCAGTTTGT--TTGGTAATATATCT-AATACAAT-TTTCATTATTTTCCTCTCACAG--GGTAATC-AAAT----ATCACTTGTGATTAGCGAAAAGTGTTAATTCATTATATGTATG-TTCATTA-TGAGCATGTTTAAag
gi|6 : A--TA-CAGT------AAGCAAA---TAAAG-TTACTTTCTCGGGCCCG------------TG--AAAAACAGTTTGTTTTTATCAA-------------AC--TTTATAAT-------ATATCCGAAGAAATT-TTTTGCAATATTC-TCTCATAA--GGGAATAAAAATATTAATCAG------TTCGCAATAGGTGTAAATTTGGTATctg
gi|7 : attccatatactttaagtgcC-TTCTT-TAAGTAACAGT------AAACACACTGTATAG-TGAACCTCCAGGGCCAG------------CC--AAAAACA--------------ATACATTATAACAAAC--TTCTT--T-------ATATCT-GATAAAAT-GTTTAATATCGTTTTCTTATAG--GAGAGT--AAAT----ATAAC------TTTGCAATAAGCTTGAATTCATTATGAGTGTG-CTca
gi|8 : tTTATGATATAGTAAAACGTTGTTATAG-GAAACCCCCCAGAGCCG-GTGAAAAACATTTCATTATGATTAAAACTTTATTAT---------GTACAGTAA-------AA--CACTGTAATTATAGTGAACC--TCCAGGGATAGCTAAATAAAAC-TTTTGTTATAAACTAACTTCATT-T-TATCAAAA-ACAGTTtttctg
gi|9 : ACAGTTATTATATAAGACCTCTAG----GGCCTGTGTAAAAACAGTT-ATTATA-TG---AGAC-CTC-------TA-CAGCCTGCGTAAAAACAGT-T-----TGA--------------------------C---ATTACCA--------------C-------------AC--TGTGT--T-------ATAGTC-AACAGAACATTTCATTATTTTCCTCACATAG--GAGACT--GAAT----ATGAT------TTCATAATAAGC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACCTTCGGTTCAGGTGAGCTAAAAATAGCTTATTCTTCAAACTTTACTAGCATGAATT
Unaligned ( gi|19 ): TCTCTGAGCTTTCGGCTCAGGTGAGCTAAAAAGGGTATACCACCAAACTCCAACAT
Unaligned ( gi|20 ): ATAAGTGGTCATTCATCATAAGCATGTTTACTATAAATGTGTTTTTATT
Unaligned ( gi|21 ): CTTTTTCCTTCGGCTCAGGTGAGCTAAAAAGGGCGTTCAGTATGA
Unaligned ( gi|22 ): GGTAAACAGCTCAGCAATAGCTGTTTTATGGATA
Unaligned ( gi|23 ): TTTCCTTCGGCTCAGGTGAGCTAAAAA