lowQualScore : 11111111111 111 11 111 111 11111 3333333333333333333333 1111 1111111
lowQualScore : 3 44 1 3 44 888888 77 3 3 88888888888 3 6 999 1 77 555 3 0 00 7 777 4 444 333 22222 0 5 7777 4444444444444444444444 0 0000 4 77 2222222
lowQualScore : . .. . . .. ...... .. . . ........... . . ... . .. ... . . .. . ... . ... ... ..... . . .... ...................... . .... . .. .......
lowQualScore : 3 22 9 1 22 888888 33 1 1 22222222222 1 7 666 9 33 555 1 9 00 3 000 0 111 444 66666 2 0 1111 4444444444444444444444 4 6666 0 11 1111111
consensus : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGA-AA-AA-NATTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-AAA---A-TACTT--AAAGAAT--AAG--TGNTTGGGACT-TCCA-AATCANT--TCGACAT-A--TCCAT-ATGGTATTCG----AGATA-TC-AGTGTTC-----GAGATACCGAAGTTCGAC
Reference ( gi|3 ) : TATACAG-TCAAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACTG-----AGA-AA-AA-TATTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGA-GT-AAA---A-TACTT--GAAGAAT--AAG--TGTTTGGGACT-TCCA-AATCTCT--TCAGCAT-A--TCCAT-ATAGTATTTG----AGATA-TC-AGTGTTC-----GAGATACTGAAGTTCGAC
gi|4 : TATCCAG-TCAA---CCGCGT-T--A------TCTCC--A-ACTC-G-TG--ACTG-----AGA-AA-AA-C-TTTGTGAT--ATCCG-A-GGAT-TTGAGATATCGAGG-GT-AGA---A-TACTT--AAAGAAT--TAG--TGCTTGGGACT-TCTA-AATCACT--TCCACATAA--T---T-GTGGTATTTG----AGATA-TC-AGTGTTC-----GAGATACCAAAGTTC
gi|5 : aTATACAG-TCGAA--CCTCAT-T--A------TCTCA--A-ACTC-GATGGGACCG-----AGA-AA-AA-ACTTCCAGAT--ATCTG-T-GGAT-TTGAGATGTCTAGG-GTAAAA---A-TACTT--GGAAAAT--AGG--TGGCTG-----------AATCACT--TCGATGT-A--GCC---ATGGTATTCGAGATAGATA-TC-AGTGT--------------TGAAGTTCAACagct
gi|8 : aTGTACAG-TCAAA--CCTTGT-T--A------TCTTG--A-ATTT-GAT-----------------A-AA-C-TCTGAGAT--ACCAA-A-GGGT-TTGAGACATTGAGG-TT-AAA---G-TACTT--AAAGAA---AAG--AAGTTGGTACT-TCCA-ACTCAAT--TTGACAT-A--TCC---ATAGTATTCA----ATATA-TC-GAT---------GAGATACTGAtg
gi|12 : taTATACAG-CCAAA--TCTCTT-TTAA------CATCGGAA-ACTT-GATGGGGCTGGA---AAA-AA-AA-AATT-GAGCT--ATCCG-A--GAT-TGAAGATACTGAG
gi|14 : TATACAGGTCAGA--CTTCAT-C--A------TCTCA--A-AAGC-GATGTTGTCA-----AGA-AA-AA--ACTTG----------G-A-GAGT-TCAAGATATttaaa
gi|6 : ATACA--TCAA----CTTGT-T--A------TCTCA--A---TC-AGTGGAACTA-----AGACAA-AA-TAGTTAAGGT--ACCTG-G-GGAT-TCGAAAT-TGGGGG-TT-AAA---A-TACTTA-GAAAAATTAAAG--TGATTGGGACT-CCAA-AATCAGT--TCTGCAT-AATTCC---ATGATATTCA----AGACA-TCAAGTG--C-----GACATAatgctttgag
gi|15 : ttacATACAG-CCAAA--CCTCAT-T--A------TCTTG--A-ACTT-GATTGAACCG-----AAA-AACAA-T
gi|17 : gtcaaATACAG-TCCAG--CTTCAT-T--A------TCTCA--A-ACTC-GGTGGGTCCG-----AGA-A
gi|2 : acTACAG-TCGAA--CATCGT-T--A------TCTCG--A-ACTC-GATA----TA-----AAA-AACAA-ACTTCGATATA-ATCAG-T-GGAT-TCGAGATATCGAGG-GT-AAA---ATTACTT--CGAAAAT--AAG--TATCTGGAACA-TCCA-GCTCATT--TCGACAT-A---AGAC-ATGGTATTTA----AGATA-TT-AGTGTTC-----AAGTTACCAAAGTTCAA
gi|7 : acgTACAG-TATAA--CCTTGT-T--ACATGTATCT------ACTC-AATGATGCTG-----AGA-AA-AA-AAT--GAGATACATGCA-A-GGGT-TTAAGAT---GAGA-TT--AA---A-TACATAGAAAAAAT--AAA---G-TTGGAACTGTCC--ACTCGCT--TCAATAT-A--TCCATGATATTTTATA----AGATA-Tttgtat
gi|13 : ttTACAG-TAAAATACCTC---C--A------TCTCA--A-AGTCCGA--GGACTT-----AAA-AA-AA-ACTTCGAGAT--ATCCG-G-GGGT-TCGAGATATCtgatac
gi|10 : aaaaggaggACAG-TCGAA--TCTCAT-G--A------TCTCG--ATACTC-GATGGGACC------AGA-AA-----GTTTGAG-T--ATCCATA-AAATCTTAAGATATCAAGG-GTAAAA---A-TACTC--AGAG
gi|1 : aaataCAAA--CCTCGTCT--A------TCTCGG-A-ACTC--ATGA-ACCGTAGCCAGA-AG-AAGCATTCCACAT--ATCCC-ATGAAT-TCTACATTGCGAG--GT-GAACAAA-TACTT--TAGGAAA--GAGGTTGTT--AGACT-TCCATAATCTACGACCGGC------TGCAT-A-GGTATTCG----AGATAATC-TGTGTTTATTTTGA-ATACCGAAGTTCGA
gi|11 : -TATTCGAGAT--AACCG-T-G--T-TCGA-ATATCAGGA-GT-atgta
gi|16 : aaatagggcatgggccttgaaaatacttcgacataagcggggTTCGCGAT--ATCCA-A-GGAT-TTGAGACATTGAGG-AT-GAA---A-TACTC--AAAGAAtttttaaatcattta
gi|9 : GAGATATTAAGGTAT-AAA---G-TACAT--AAAAAA---ATG--TTTTTAGGACT-TCCA-------C--TCAAAAT-A--TC--T-GCAGTATTTA----GGATA-AC-GATGTTT-----GAGATGCCAAAgtgg
gi|2 : tgtggATA-TC--GAGTTC-----GAGATAACGATGTTCGACt
gi|18 : acgtacaACA-NC-AGTGTTT-----GAGATACTGAGGTTCAACaaaaaacaaacttcgatataatcagtggattcgagatatcgagggtaaaattacttcgaaaataagtatctggaacatccagctcatttcgacataagacatggtatttaagatattagtgttcaagttaccaaagttcaattgtat
gi|5 : GTTT-----GAGATAATGAGGTTCGACtgt
Alignments
lowQualScore : 1111111 111 111 3333333333 111111111 111111
lowQualScore : 3 6 44 0 3 44 888888 77 3 3 66 4444444 3 333 2 77 555 3 0 888888 3 6666 111 3 1 55 4 4 0 66 4444444444 111111111 3 4 222222 5 4
lowQualScore : . . .. . . .. ...... .. . . .. ....... . ... . .. ... . . ...... . .... ... . . .. . . . .. .......... ......... . . ...... . .
lowQualScore : 3 3 22 7 1 22 888888 33 1 1 88 5555555 1 999 6 33 333 1 9 111111 6 9999 222 5 0 55 0 0 6 22 6666666666 555555555 6 0 333333 0 4
consensus : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGA-AAAAA-NTTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACATA--TCCA-TATGGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
Reference ( family-470 ) : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGA-AAAAN-ATTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCANTTCGACATA--TCCA-TATGGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
gi|1 : CAAA--CCTCGTCT--A------TCTCGG-A-ACTC--ATGA-ACCGTAGCCAGA-AGAAGCATTCCACAT--ATCCC-ATGAAT-TCTACATTGCGAGGTGA-ACAAA-TACTT--T-AGGAA----AGAGGTTGTTAGACT-TCCATAATC--TACGACCGGC-TGCA-TA-GGTATT---CG----AGATAATC-TGTGTTTATTTTGA-ATACC-GAAGTTCGA
gi|10 : ACAG-TCGAA--TCTCAT-G--A------TCTCG--ATACTC-GATGGGACC------AGA-AA----GTTTGAG-T--ATCCATA-AAATCTTAAGATATCAAGG-GTAA-AAA-TACTC--A-GAGatgta
gi|11 : aaataAAT--AGG-GCATG--GGCCT-TGAA-AAT-ACTTCGACATA--AGCG-G--GGTATT---CG----AGATA-AC-CGTGTTC-----GA-ATATCAGGAGTT
gi|12 : aTATACAG-CCAAA--TCTCTT-TTAA------CATCGGAA-ACTT-GATGGGGCTGGA---AAA-AAAAA-ATT-GAGCT--ATCCG-A--GAT-TGAAGATACTGAGttttaaatcattta
gi|13 : TACAG-TAAAATACCTC---C--A------TCTCA--A-AGTCCGA--GGACTT-----AAA-AAAAA-CTTCGAGAT--ATCCG-G-GGGT-TCGAGATATCttaaa
gi|14 : aaaaggaggTATACAGGTCAGA--CTTCAT-C--A------TCTCA--A-AAGC-GATGTTGTCA-----AGA-AAAAA-CTTGGAGA-------------GT-TCAAGATAT
gi|16 : TTCGCGAT--ATCCA-A-GGAT-TTGAGACATTGAGG-AT-G-AAA-TACTC--A-AAGAAatgctttgag
gi|17 : ATACAG-TCCAG--CTTCAT-T--A------TCTCA--A-ACTC-GGTGGGTCCG-----AGA-Agtgg
gi|18 : acACA-NC-AGTGTTT-----GAGATACT-GAGGTTCAAC
gi|2 : TACAG-TCGAA--CATCGT-T--A------TCTCG--A-ACTC-GAT---ATAA-----AAA-ACAAA-CTTCGATATA-ATCAG-T-GGAT-TCGAGATATCGAGG-GT-A-AAATTACTT--C-GAAAAT--AAGTATCTG--GAACA-TCCA-GCTCATTTCGACATA---AGA-CATGGTATT---TA----AGATA-TT-AGTGTTC-----AAGTTACC-AAAGTTCAAtgt
gi|3 : acgTATACAG-TCAAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACTG-----AGA-AAAAT-ATTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGA-GT-A-AAA-TACTT--G-AAGAAT--AAGTGTTTG--GGACT-TCCA-AATCTCTTCAGCATA--TCCA-TATAGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACT-GAAGTTCGACttgtat
gi|4 : TATCCAG-TC-AA--CCGCGT-T--A------TCTCC--A-ACTC-G-TG--ACTG-----AGA-AAAAC--TTTGTGAT--ATCCG-A-GGAT-TTGAGATATCGAGG-GT-A-GAA-TACTT--A-AAGAAT--TAGTGCTTG--GGACT-TCTA-AATCACTTCCACATA-----ATTGTGGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACC-AAAGTTC
gi|5 : aTATACAG-TCGAA--CCTCAT-T--A------TCTCA--A-ACTC-GATGGGACCG-----AGA-AAAAA-CTTCCAGAT--ATCTG-T-GGAT-TTGAGATGTCTAGG-GTAA-AAA-TACTT--G-GAAAAT--AGGTGGCTG-------------AATCACTTCGATGTA--GCC---ATGGTATT---CGAGATAGATA-TC-AGTGTT---------------GAAGTTCAACagct
gi|6 : aATACA--TCAA----CTTGT-T--A------TCTCA--A---TC-AGTGGAACTA-----AGACAAAAT-AGTTAAGGT--ACCTG-G-GGAT-TCGAAAT-TGGGGG-TT-A-AAA-TACTT--AGAAAAATTAAAGTGATTG--GGACT-CCAA-AATCAGTTCTGCATAATTCC---ATGATATT---CA----AGACA-TCAAGTG--C-----GACATAtg
gi|7 : ttacTACAG-TATAA--CCTTGT-T--ACATGTATCT------ACTC-AATGATGCTG-----AGA-AAAAA-AT--GAGATACATGCA-A-GGGT-TTAAGAT---GAGA-TT---AAA-TACATAGA-AAAAAT--AA--AGTTG--GAACTGTCC--ACTCGCTTCAATATA--TCC---ATGATATTTTATA----AGATA-T
gi|8 : ttTGTACAG-TCAAA--CCTTGT-T--A------TCTTG--A-ATTT-GAT-----------------AAAC--TCTGAGAT--ACCAA-A-GGGT-TTGAGACATTGAGG-TT-A-AAG-TACTT--A-AAGAA---AAGAAGTTG--GTACT-TCCA-ACTCAATTTGACATA--TCCA-TA--GTATT---CA----ATATA-TC-GAT---------GAGATACT-GAtgatac
gi|9 : taGAGATATTAAGGTAT-A-AAG-TACAT--A-AAAAA---ATGTTTTTA--GGACT-TCCA-------CTCAAAATA--TC---TGCAGTATT---TA----GGATA-AC-GATGTTT-----GAGATGCC-AAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCAAATACAGCCAAACCTCATTATCTTGAACTTGATTGAACCGAAAAACAAT
Alignments
lowQualScore : 1111111 111 3333333333 111111111 111111
lowQualScore : 3 6 44 0 3 44 888888 77 3 3 66 4444444 3 5555 5 3 44 555 3 0 7777 3 3 88 111 6 1 55 4 666 44 4444444444 111111111 3 4 222222 5 4
lowQualScore : . . .. . . .. ...... .. . . .. ....... . .... . . .. ... . . .... . . .. ... . . .. . ... .. .......... ......... . . ...... . .
lowQualScore : 3 3 22 7 1 22 888888 33 1 1 88 5555555 1 9999 2 1 22 333 1 9 6666 6 6 66 222 0 0 55 0 999 00 6666666666 555555555 6 0 333333 0 4
consensus : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGA-AAAA-AC-TTCGAGAT-A--TCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTTA--AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACATA--TCCA-TATGGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
Reference ( family-470 ) : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGA-AAAA-AN-TTCGAGAT-A--TCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTTA--AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACATA--TCCA-TATGGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
gi|1 : CAAA--CCTCGTCT--A------TCTCGG-A-ACTC--ATGA-ACCGTAGCCAGA-AGAA-GCATTCCACAT-A--TCCC-ATGAAT-TCTACATTGCGAGGTGA-ACAAA-TACTTT--AGGAA----AGAGGTTGTTAGACT-TCCATAATC--TACGACCGGC-TGCA-TA-GGTATT---CG----AGATAATC-TGTGTTTATTTTGA-ATACC-GAAGTTCGA
gi|10 : ACAG-TCGAA--TCTCAT-G--A------TCTCG--ATACTC-GATGGGACC----------AGAA-AG-TTTGAG-T-A--TCCATA-AAATCTTAAGATATCAAGG-GTAA-AAA-TACTCA--GAGatgta
gi|11 : aaataAAT--AGG-GCATG--GGCCT-TGAA-AAT-ACTTCGACATA--AGCG-G--GGTATT---CG----AGATA-AC-CGTGTTC-----GA-ATATCAGGAGTT
gi|12 : aTATACAG-CCAAA--TCTCTT-TTAA------CATCGGAA-ACTT-GATGGGGCTGGA---AAA-AAAA-AA-TT-GAGCT-A--TCCG-A--GAT-TGAAGATACTGAGttttaaatcattta
gi|13 : TACAG-TAAAATACCTC---C--A------TCTCA--A-AGTCCGA--GGACTT-----AAA-AAAA-AC-TTCGAGAT-A--TCCG-G-GGGT-TCGAGATATCttaaa
gi|14 : aaaaggaggTATACAGGTCAGA--CTTCAT-C--A------TCTCA--A-AAGC-GATGTTGTCA-----AGA-AAAA-AC-TTGGAGA--------------GT-TCAAGATAT
gi|16 : -TTCGCGAT-A--TCCA-A-GGAT-TTGAGACATTGAGG-AT-G-AAA-TACTCA--AAGAAatgctttgag
gi|17 : ATACAG-TCCAG--CTTCAT-T--A------TCTCA--A-ACTC-GGTGGGTCCG-----AGA-Agtgg
gi|18 : acACA-NC-AGTGTTT-----GAGATACT-GAGGTTCAAC
gi|2 : TACAG-TCGAA--CATCGT-T--A------TCTCG--A-ACTC-GAT---ATAA-----AAA-ACAA-AC-TTCGATATAA--TCAG-T-GGAT-TCGAGATATCGAGG-GT-A-AAATTACTTC--GAAAAT--AAGTATCTG--GAACA-TCCA-GCTCATTTCGACATA---AGA-CATGGTATT---TA----AGATA-TT-AGTGTTC-----AAGTTACC-AAAGTTCAAtgt
gi|3 : acgTATACAG-TCAAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACTG-----AGA-AAAA-TA-TTCGAGAT-A--TCCG-A-GGAT-TCGAGATATCGAGA-GT-A-AAA-TACTTG--AAGAAT--AAGTGTTTG--GGACT-TCCA-AATCTCTTCAGCATA--TCCA-TATAGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACT-GAAGTTCGACttgtat
gi|4 : TATCCAG-TC-AA--CCGCGT-T--A------TCTCC--A-ACTC-G-TG--ACTG-----AGA-AAAA--C-TTTGTGAT-A--TCCG-A-GGAT-TTGAGATATCGAGG-GT-A-GAA-TACTTA--AAGAAT--TAGTGCTTG--GGACT-TCTA-AATCACTTCCACATA-----ATTGTGGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACC-AAAGTTC
gi|5 : aTATACAG-TCGAA--CCTCAT-T--A------TCTCA--A-ACTC-GATGGGACCG-----AGA-AAAA-AC-TTCCAGAT-A--TCTG-T-GGAT-TTGAGATGTCTAGG-GTAA-AAA-TACTTG--GAAAAT--AGGTGGCTG-------------AATCACTTCGATGTA--GCC---ATGGTATT---CGAGATAGATA-TC-AGTGTT---------------GAAGTTCAACagct
gi|6 : aATACA--TCAA----CTTGT-T--A------TCTCA--A---TC-AGTGGAACTA-----AGACAAAATAG-TT-AAGGT-A--CCTG-G-GGAT-TCGAAAT-TGGGGG-TT-A-AAA-TACTTAG-AAAAATTAAAGTGATTG--GGACT-CCAA-AATCAGTTCTGCATAATTCC---ATGATATT---CA----AGACA-TCAAGTG--C-----GACATAtg
gi|7 : ttacTACAG-TATAA--CCTTGT-T--ACATGTATCT------ACTC-AATGATGCTG-----AGA-AAAA-AA-T--GAGAT-ACATGCA-A-GGGT-TTAAGAT---GAGA-TT-A-AA--TACATAGAAAAAAT--AAA--GTTG--GAACTGTCCA-C-TCGCTTCAATATA--TCC---ATGATATTTTATA----AGATA-T
gi|8 : ttTGTACAG-TCAAA--CCTTGT-T--A------TCTTG--A-ATTT-GAT------------------AA-AC-TCTGAGAT-A--CCAA-A-GGGT-TTGAGACATTGAGG-TT-A-AAG-TACTTA--AAGAA---AAGAAGTTG--GTACT-TCCA-ACTCAATTTGACATA--TCCA-TA--GTATT---CA----ATATA-TC-GAT---------GAGATACT-GAtgatac
gi|9 : taGAGATATTAAGGTAT-A-AAG-TACATA--AAAAA---ATGTTTTTA--GGACT-TCCA-------CTCAAAATA--TC---TGCAGTATT---TA----GGATA-AC-GATGTTT-----GAGATGCC-AAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCAAATACAGCCAAACCTCATTATCTTGAACTTGATTGAACCGAAAAACAAT
Alignments
lowQualScore : 1111111 111 3333333333 111111111 111111
lowQualScore : 3 6 44 0 3 44 888888 77 3 3 66 4444444 7777 5 77 555 3 0 888888 3 6666 111 3 1 55 4 4 0 44 4444444444 111111111 3 4 222222 5 4
lowQualScore : . . .. . . .. ...... .. . . .. ....... .... . .. ... . . ...... . .... ... . . .. . . . .. .......... ......... . . ...... . .
lowQualScore : 3 3 22 7 1 22 888888 33 1 1 88 5555555 5555 2 33 333 1 9 111111 6 9999 222 5 0 55 0 0 6 00 6666666666 555555555 6 0 333333 0 4
consensus : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACATA--TCCA-TATGGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
Reference ( family-470 ) : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACATA--TCCA-TATGGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
gi|1 : CAAA--CCTCGTCT--A------TCTCGG-A-ACTC--ATGA-ACCGTAGCCAGAAGAAGCA-TTCCACAT--ATCCC-ATGAAT-TCTACATTGCGAGGTGA-ACAAA-TACTT--T-AGGAA----AGAGGTTGTTAGACT-TCCATAATC--TACGACCGGC-TGCA-TA-GGTATT---CG----AGATAATC-TGTGTTTATTTTGA-ATACC-GAAGTTCGA
gi|10 : ACAG-TCGAA--TCTCAT-G--A------TCTCG--ATACTC-GATGGGACC------AGAAAG-----TTTGAG-T--ATCCATA-AAATCTTAAGATATCAAGG-GTAA-AAA-TACTC--A-GAGatgta
gi|11 : aaataAAT--AGG-GCATG--GGCCT-TGAA-AAT-ACTTCGACATA--AGCG-G--GGTATT---CG----AGATA-AC-CGTGTTC-----GA-ATATCAGGAGTT
gi|12 : aTATACAG-CCAAA--TCTCTT-TTAA------CATCGGAA-ACTT-GATGGGGCTGGA---AAAAAAAAA--TT-GAGCT--ATCCG-A--GAT-TGAAGATACTGAGttttaaatcattta
gi|13 : TACAG-TAAAATACCTC---C--A------TCTCA--A-AGTCCGA--GGACTT-----AAAAAAAAC--TTCGAGAT--ATCCG-G-GGGT-TCGAGATATCttaaa
gi|14 : aaaaggaggTATACAGGTCAGA--CTTCAT-C--A------TCTCA--A-AAGC-GATGTTGTCA-----AGAAAAAAC--TTGGAGA-------------GT-TCAAGATAT
gi|16 : --TTCGCGAT--ATCCA-A-GGAT-TTGAGACATTGAGG-AT-G-AAA-TACTC--A-AAGAAatgctttgag
gi|17 : ATACAG-TCCAG--CTTCAT-T--A------TCTCA--A-ACTC-GGTGGGTCCG-----AGAAgtgg
gi|18 : acACA-NC-AGTGTTT-----GAGATACT-GAGGTTCAAC
gi|2 : TACAG-TCGAA--CATCGT-T--A------TCTCG--A-ACTC-GAT---ATAA-----AAAACAAAC--TTCGATATA-ATCAG-T-GGAT-TCGAGATATCGAGG-GT-A-AAATTACTT--C-GAAAAT--AAGTATCTG--GAACA-TCCA-GCTCATTTCGACATA---AGA-CATGGTATT---TA----AGATA-TT-AGTGTTC-----AAGTTACC-AAAGTTCAAtgt
gi|3 : acgTATACAG-TCAAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACTG-----AGAAAAATA--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGA-GT-A-AAA-TACTT--G-AAGAAT--AAGTGTTTG--GGACT-TCCA-AATCTCTTCAGCATA--TCCA-TATAGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACT-GAAGTTCGACttgtat
gi|4 : TATCCAG-TC-AA--CCGCGT-T--A------TCTCC--A-ACTC-G-TG--ACTG-----AGAAAAA-C--TTTGTGAT--ATCCG-A-GGAT-TTGAGATATCGAGG-GT-A-GAA-TACTT--A-AAGAAT--TAGTGCTTG--GGACT-TCTA-AATCACTTCCACATA-----ATTGTGGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACC-AAAGTTC
gi|5 : aTATACAG-TCGAA--CCTCAT-T--A------TCTCA--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCCAGAT--ATCTG-T-GGAT-TTGAGATGTCTAGG-GTAA-AAA-TACTT--G-GAAAAT--AGGTGGCTG-------------AATCACTTCGATGTA--GCC---ATGGTATT---CGAGATAGATA-TC-AGTGTT---------------GAAGTTCAACagct
gi|6 : aATACA--TCAA----CTTGT-T--A------TCTCA--A---TC-AGTGGAACTA-----AGACAAAATAGTT-AAGGT--ACCTG-G-GGAT-TCGAAAT-TGGGGG-TT-A-AAA-TACTT--AGAAAAATTAAAGTGATTG--GGACT-CCAA-AATCAGTTCTGCATAATTCC---ATGATATT---CA----AGACA-TCAAGTG--C-----GACATAtg
gi|7 : ttacTACAG-TATAA--CCTTGT-T--ACATGTATCT------ACTC-AATGATGCTG-----AGAAAAAAA--T--GAGATACATGCA-A-GGGT-TTAAGAT---GAGA-TT---AAA-TACATAGA-AAAAAT--AA--AGTTG--GAACTGTCC--ACTCGCTTCAATATA--TCC---ATGATATTTTATA----AGATA-T
gi|8 : ttTGTACAG-TCAAA--CCTTGT-T--A------TCTTG--A-ATTT-GAT-----------------AAAC--TCTGAGAT--ACCAA-A-GGGT-TTGAGACATTGAGG-TT-A-AAG-TACTT--A-AAGAA---AAGAAGTTG--GTACT-TCCA-ACTCAATTTGACATA--TCCA-TA--GTATT---CA----ATATA-TC-GAT---------GAGATACT-GAtgatac
gi|9 : taGAGATATTAAGGTAT-A-AAG-TACAT--A-AAAAA---ATGTTTTTA--GGACT-TCCA-------CTCAAAATA--TC---TGCAGTATT---TA----GGATA-AC-GATGTTT-----GAGATGCC-AAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCAAATACAGCCAAACCTCATTATCTTGAACTTGATTGAACCGAAAAACAAT
Alignments
lowQualScore : 1111111 111 3333333333 111111111 111111
lowQualScore : 3 6 44 0 3 44 888888 77 3 3 66 4444444 7777 5 77 555 3 0 888888 3 6666 111 3 1 55 4 4 0 44 4444444444 111111111 3 4 222222 5 4
lowQualScore : . . .. . . .. ...... .. . . .. ....... .... . .. ... . . ...... . .... ... . . .. . . . .. .......... ......... . . ...... . .
lowQualScore : 3 3 22 7 1 22 888888 33 1 1 88 5555555 5555 2 33 333 1 9 111111 6 9999 222 5 0 55 0 0 6 00 6666666666 555555555 6 0 333333 0 4
consensus : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACATA--TCCA-TATGGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
Reference ( family-470 ) : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACATA--TCCA-TATGGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
gi|1 : CAAA--CCTCGTCT--A------TCTCGG-A-ACTC--ATGA-ACCGTAGCCAGAAGAAGCA-TTCCACAT--ATCCC-ATGAAT-TCTACATTGCGAGGTGA-ACAAA-TACTT--T-AGGAA----AGAGGTTGTTAGACT-TCCATAATC--TACGACCGGC-TGCA-TA-GGTATT---CG----AGATAATC-TGTGTTTATTTTGA-ATACC-GAAGTTCGA
gi|10 : ACAG-TCGAA--TCTCAT-G--A------TCTCG--ATACTC-GATGGGACC------AGAAAG-----TTTGAG-T--ATCCATA-AAATCTTAAGATATCAAGG-GTAA-AAA-TACTC--A-GAGatgta
gi|11 : aaataAAT--AGG-GCATG--GGCCT-TGAA-AAT-ACTTCGACATA--AGCG-G--GGTATT---CG----AGATA-AC-CGTGTTC-----GA-ATATCAGGAGTT
gi|12 : aTATACAG-CCAAA--TCTCTT-TTAA------CATCGGAA-ACTT-GATGGGGCTGGA---AAAAAAAAA--TT-GAGCT--ATCCG-A--GAT-TGAAGATACTGAGttttaaatcattta
gi|13 : TACAG-TAAAATACCTC---C--A------TCTCA--A-AGTCCGA--GGACTT-----AAAAAAAAC--TTCGAGAT--ATCCG-G-GGGT-TCGAGATATCttaaa
gi|14 : aaaaggaggTATACAGGTCAGA--CTTCAT-C--A------TCTCA--A-AAGC-GATGTTGTCA-----AGAAAAAAC--TTGGAGA-------------GT-TCAAGATAT
gi|16 : --TTCGCGAT--ATCCA-A-GGAT-TTGAGACATTGAGG-AT-G-AAA-TACTC--A-AAGAAatgctttgag
gi|17 : ATACAG-TCCAG--CTTCAT-T--A------TCTCA--A-ACTC-GGTGGGTCCG-----AGAAgtgg
gi|18 : acACA-NC-AGTGTTT-----GAGATACT-GAGGTTCAAC
gi|2 : TACAG-TCGAA--CATCGT-T--A------TCTCG--A-ACTC-GAT---ATAA-----AAAACAAAC--TTCGATATA-ATCAG-T-GGAT-TCGAGATATCGAGG-GT-A-AAATTACTT--C-GAAAAT--AAGTATCTG--GAACA-TCCA-GCTCATTTCGACATA---AGA-CATGGTATT---TA----AGATA-TT-AGTGTTC-----AAGTTACC-AAAGTTCAAtgt
gi|3 : acgTATACAG-TCAAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACTG-----AGAAAAATA--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGA-GT-A-AAA-TACTT--G-AAGAAT--AAGTGTTTG--GGACT-TCCA-AATCTCTTCAGCATA--TCCA-TATAGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACT-GAAGTTCGACttgtat
gi|4 : TATCCAG-TC-AA--CCGCGT-T--A------TCTCC--A-ACTC-G-TG--ACTG-----AGAAAAA-C--TTTGTGAT--ATCCG-A-GGAT-TTGAGATATCGAGG-GT-A-GAA-TACTT--A-AAGAAT--TAGTGCTTG--GGACT-TCTA-AATCACTTCCACATA-----ATTGTGGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACC-AAAGTTC
gi|5 : aTATACAG-TCGAA--CCTCAT-T--A------TCTCA--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCCAGAT--ATCTG-T-GGAT-TTGAGATGTCTAGG-GTAA-AAA-TACTT--G-GAAAAT--AGGTGGCTG-------------AATCACTTCGATGTA--GCC---ATGGTATT---CGAGATAGATA-TC-AGTGTT---------------GAAGTTCAACagct
gi|6 : aATACA--TCAA----CTTGT-T--A------TCTCA--A---TC-AGTGGAACTA-----AGACAAAATAGTT-AAGGT--ACCTG-G-GGAT-TCGAAAT-TGGGGG-TT-A-AAA-TACTT--AGAAAAATTAAAGTGATTG--GGACT-CCAA-AATCAGTTCTGCATAATTCC---ATGATATT---CA----AGACA-TCAAGTG--C-----GACATAtg
gi|7 : ttacTACAG-TATAA--CCTTGT-T--ACATGTATCT------ACTC-AATGATGCTG-----AGAAAAAAA--T--GAGATACATGCA-A-GGGT-TTAAGAT---GAGA-TT---AAA-TACATAGA-AAAAAT--AA--AGTTG--GAACTGTCC--ACTCGCTTCAATATA--TCC---ATGATATTTTATA----AGATA-T
gi|8 : ttTGTACAG-TCAAA--CCTTGT-T--A------TCTTG--A-ATTT-GAT-----------------AAAC--TCTGAGAT--ACCAA-A-GGGT-TTGAGACATTGAGG-TT-A-AAG-TACTT--A-AAGAA---AAGAAGTTG--GTACT-TCCA-ACTCAATTTGACATA--TCCA-TA--GTATT---CA----ATATA-TC-GAT---------GAGATACT-GAtgatac
gi|9 : taGAGATATTAAGGTAT-A-AAG-TACAT--A-AAAAA---ATGTTTTTA--GGACT-TCCA-------CTCAAAATA--TC---TGCAGTATT---TA----GGATA-AC-GATGTTT-----GAGATGCC-AAA
blockSeqs : G G TA . TA CATGTA GA T C GG TGGA ATAG T AC TA C GTAA T AGA TTA T C . G . AC TCCATAT CGAGAT . A C G A
blockSeqs : . A . . . . . . . GG TT AA C A A . GTAA . AG T T T . . . AT ATTCCAT TTATA . . T G .
blockSeqs : . A . . . . . . . GG CA AC G . G . TATA . A T T T . . . TC AGACAT CG . . C G .
blockSeqs : . A . . . . . . . TT CG AC C . A . ATG . A T T C . . . AC TCCATA TA . . C G .
blockSeqs : . C . . . . . . . GG AA AC C . T . GTA . C T T G . . . AC AGCGG TG . . C C .
blockSeqs : . G . . . . . . . GG TG TA C . A . GTA . G T A A . . . AG ATTGT TG . . C G .
blockSeqs : . A . . . . . . . GG TG AC T . A . GTA . A T T G . . . GC GCCAT CA . . T G .
blockSeqs : . G . . . . . . . GA CG AA C . T . TTA . G . . G . . . AA TCCAT CA . . . . .
blockSeqs : . A . . . . . . . AT TA AC T . G . TTA . A . . T . . . . TCTGC TA . . . .
blockSeqs : . T . . . . . . . . TG C . . A . TT . A .
blockSeqs : . A . . . . . . . . C . . . A .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons : ** GG CG***** AC** A** GTA*** T** ** AC NCCGT***** C*****
originalCons : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACATA--TCCA-TATGGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
finalCons : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCGAGAT--ATCCGA--GGAT-TCGAGATATCGAGGGTA---AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACATANCCGT-----GGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCAAATACAGCCAAACCTCATTATCTTGAACTTGATTGAACCGAAAAACAAT
Alignments
lowQualScore : 1111111 111 111111111 111111
lowQualScore : 3 6 44 0 3 44 888888 77 3 3 66 4444444 7777 5 77 555 3 0 888888 3 6666 111 3 1 55 4 4 0 44 4 666 8888888 111111111 3 4 222222 5 4
lowQualScore : . . .. . . .. ...... .. . . .. ....... .... . .. ... . . ...... . .... ... . . .. . . . .. . ... ....... ......... . . ...... . .
lowQualScore : 3 3 22 7 1 22 888888 33 1 1 88 5555555 5555 2 33 333 1 9 111111 6 9999 222 5 0 55 0 0 6 00 0 555 5555555 555555555 6 0 333333 0 4
consensus : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACAT-A--NCC--GT---GGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
Reference ( family-470 ) : TATACAG-TCGAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGG-GT-A-AAA-TACTT--A-AAGAAT--AAGTGNTTG--GGACT-TCCA-AATCACTTCGACAT-A--NCC--GT---GGTATT---CG----AGATA-TC-AGTGTTC-----GAGATACC-GAAGTTCGAC
gi|1 : CAAA--CCTCGTCT--A------TCTCGG-A-ACTC--ATGA-ACCGTAGCCAGAAGAAGCA-TTCCACAT--ATCCC-ATGAAT-TCTACATTGCGAGGTGA-ACAAA-TACTT--T-AGGAA----AGAGGTTGTTAGACT-TCCATAATC--TACGAC-C-G--GCT--GCATAGGTATT---CG----AGATAATC-TGTGTTTATTTTGA-ATACC-GAAGTTCGA
gi|10 : ACAG-TCGAA--TCTCAT-G--A------TCTCG--ATACTC-GATGGGACC------AGAAAG-----TTTGAG-T--ATCCATA-AAATCTTAAGATATCAAGG-GTAA-AAA-TACTC--A-GAGatgta
gi|11 : aaataAAT--AGG-GCATG--GGCCT-TGAA-AAT-ACTTCGACAT-A--AGC--GG---GGTATT---CG----AGATA-AC-CGTGTTC-----GA-ATATCAGGAGTT
gi|12 : aTATACAG-CCAAA--TCTCTT-TTAA------CATCGGAA-ACTT-GATGGGGCTGGA---AAAAAAAAA--TT-GAGCT--ATCCG-A--GAT-TGAAGATACTGAGttttaaatcattta
gi|13 : TACAG-TAAAATACCTC---C--A------TCTCA--A-AGTCCGA--GGACTT-----AAAAAAAAC--TTCGAGAT--ATCCG-G-GGGT-TCGAGATATCttaaa
gi|14 : aaaaggaggTATACAGGTCAGA--CTTCAT-C--A------TCTCA--A-AAGC-GATGTTGTCA-----AGAAAAAAC--TTGGAGA-------------GT-TCAAGATAT
gi|16 : --TTCGCGAT--ATCCA-A-GGAT-TTGAGACATTGAGG-AT-G-AAA-TACTC--A-AAGAAatgctttgag
gi|17 : ATACAG-TCCAG--CTTCAT-T--A------TCTCA--A-ACTC-GGTGGGTCCG-----AGAAgtgg
gi|18 : acACA-NC-AGTGTTT-----GAGATACT-GAGGTTCAAC
gi|2 : TACAG-TCGAA--CATCGT-T--A------TCTCG--A-ACTC-GAT---ATAA-----AAAACAAAC--TTCGATATA-ATCAG-T-GGAT-TCGAGATATCGAGG-GT-A-AAATTACTT--C-GAAAAT--AAGTATCTG--GAACA-TCCA-GCTCATTTCGACATAA--GAC--AT---GGTATT---TA----AGATA-TT-AGTGTTC-----AAGTTACC-AAAGTTCAAtgt
gi|3 : acgTATACAG-TCAAA--CCTCGT-T--A------TCTCG--A-ACTC-GATGGGACTG-----AGAAAAATA--TTCGAGAT--ATCCG-A-GGAT-TCGAGATATCGAGA-GT-A-AAA-TACTT--G-AAGAAT--AAGTGTTTG--GGACT-TCCA-AATCTCTTCAGCAT-A--TCCATAT---AGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACT-GAAGTTCGACttgtat
gi|4 : TATCCAG-TC-AA--CCGCGT-T--A------TCTCC--A-ACTC-G-TG--ACTG-----AGAAAAA-C--TTTGTGAT--ATCCG-A-GGAT-TTGAGATATCGAGG-GT-A-GAA-TACTT--A-AAGAAT--TAGTGCTTG--GGACT-TCTA-AATCACTTCCACAT-A--ATT--GT---GGTATT---TG----AGATA-TC-AGTGTTC-----GAGATACC-AAAGTTC
gi|5 : aTATACAG-TCGAA--CCTCAT-T--A------TCTCA--A-ACTC-GATGGGACCG-----AGAAAAAAC--TTCCAGAT--ATCTG-T-GGAT-TTGAGATGTCTAGG-GTAA-AAA-TACTT--G-GAAAAT--AGGTGGCTG-------------AATCACTTCGATGT-A--GCC--AT---GGTATT---CGAGATAGATA-TC-AGTGTT---------------GAAGTTCAACagct
gi|6 : aATACA--TCAA----CTTGT-T--A------TCTCA--A---TC-AGTGGAACTA-----AGACAAAATAGTT-AAGGT--ACCTG-G-GGAT-TCGAAAT-TGGGGG-TT-A-AAA-TACTT--AGAAAAATTAAAGTGATTG--GGACT-CCAA-AATCAGTTCTGCAT-AATTCC--AT---GATATT---CA----AGACA-TCAAGTG--C-----GACATAtg
gi|7 : ttacTACAG-TATAA--CCTTGT-T--ACATGTATCT------ACTC-AATGATGCTG-----AGAAAAAAA--T--GAGATACATGCA-A-GGGT-TTAAGAT---GAGA-TT---AAA-TACATAGA-AAAAAT--AA--AGTTG--GAACTGTCC--ACTCGCTTCAATAT-A--TCC--AT---GATATTTTATA----AGATA-T
gi|8 : ttTGTACAG-TCAAA--CCTTGT-T--A------TCTTG--A-ATTT-GAT-----------------AAAC--TCTGAGAT--ACCAA-A-GGGT-TTGAGACATTGAGG-TT-A-AAG-TACTT--A-AAGAA---AAGAAGTTG--GTACT-TCCA-ACTCAATTTGACAT-A--TCC--AT---AGTATT---CA----ATATA-TC-GAT---------GAGATACT-GAtgatac
gi|9 : taGAGATATTAAGGTAT-A-AAG-TACAT--A-AAAAA---ATGTTTTTA--GGACT-TCCA-------CTCAAAAT-A--TCT--GC---AGTATT---TA----GGATA-AC-GATGTTT-----GAGATGCC-AAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCAAATACAGCCAAACCTCATTATCTTGAACTTGATTGAACCGAAAAACAAT