lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 444444 1 11 2222 1 1 1 1 11 1 3333 33 1 1 2 2222 5555555555 111111111111111 1 33333333333 4 555555 22 2 33 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 4 66666 4444 1 22222222 22 111 1111111111 111111 222222222222 222 11 0000000000000000 2 2 1 11 1 33 777777777777777 44444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888 2 33 2 55555
lowQualScore : 4 22 444444 6 3 88 7 7 1 8888 3 7 0 3 7 5 6 99 3 6666 99 3 3 3 7 6 1111 8888888888 2 555555555555555 4 2 99999999999 1 0 222222 6 77 0 00 6 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 0 0 44444 2222 5 6 00000000 88 66 5 000 66 7777777777 7777 3 555 3 3 3 3 333333 3 222222222222 22 666 666 6 88 4444444444444444 0 66 0 5 4 4 88 5 55 4 111111111111111 4 33333333 4444444444444444444444444444444444444444444444444444444444444444444444444444444 0 3 55 6 0 00000 3 6 6
lowQualScore : . .. ...... . . .. . . . .... . . . . . . . .. . .... .. . . . . . .... .......... . ............... . . ........... . . ...... . .. . .. . ........................................................................................................................................ . . . ..... .... . . ........ .. .. . ... .. .......... .... . ... . . . . ...... . ............ .. ... ... . .. ................ . .. . . . . .. . .. . ............... . ........ ............................................................................... . . .. . . ..... . . .
lowQualScore : 0 00 000000 7 3 33 3 3 0 3333 3 3 7 3 3 0 7 33 3 0000 00 3 3 7 3 7 7777 7777777777 0 000000000000000 0 7 00000000000 8 0 333333 7 55 0 55 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00000 5555 5 7 77777777 22 99 0 888 11 5555555555 1111 1 444 1 1 1 1 111111 1 000000000000 00 444 999 7 33 0000000000000000 0 55 0 5 0 0 00 5 55 0 555555555555555 0 55555555 0000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55 0 0 00000 0 0 0
consensus : NTCGTANAAAGACCTTNATTAAAAAGATGTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CCTTTACAC-AAA-TATTT--A-TGATTGA-TATTT-TT-CATGC-TTTCAAACTT--G-GTTTA-TAT----GCCCCTNCCNNNNNNNNNNNNNNNGGGGAGACANTATTGTTTTTTGGCCTG-TCTGTGNGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-TACACACACCCCTTTAACCAGTA-TAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCACGTAANTGAAGCTGTTAATGGAATTCAATT--AAGA--AATTNNCCCGGAAACATTTTCTTTAGGTNTTAATCCACANCTCTCTCATCATCACAANTCCAGAAACAATCAGCAGC-TAGTT-AGTTGCGTTTCTTCAGACTATACACTTTCTG-TGA--------TTTT-TTTT--AA-GTG-TGCCC--C----------CCCCCCCC----CC-CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTACAGCCTTGANANCTTTGAACATGCTCGANNCTAATCATTTCNANTTCCTTTATAGTTATTTNTATTT-AATTAA--TTTAAAGGAGAANTNTATAGNTAATAAATAAATAAAAAAAAAAAAAANACNAAAAAAAAAAANAAAAAAAAACCNACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAATTCTNCTGCGACTGACCCTCTAAAGCTATTTTTTTTCNAAAGGTTA
Reference ( gi|2 ) : CTCGTAAAAGAACTTTAATTAAAAAGATCTTT-TA--CAATCAAAGACCAATATAT----TTA-CACGAAGGAATT-ATATACCCTTTACAT-AAA-TATTT--A-TGATTGAATATTT-TT-CATGCTTTTCAAACGT--G-GTTTACTATAA-TGCCCCTCCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTGGTCTGTAGGTCCGTCACAAAGTTTGTACAGCGCATCATTTACACACACCTC--TAAC-AGTACTAGGAAAAAA-TTGATACGCCAGAAATTGAGTAAATTGTGTTCAAATTTCCTACGTAATTGAAGCTGTTAATGGAATTTAATTGCAAGATAAATAGGTCTGAAAACATTTTCTTTAAACGTTAATC-ACACC--------------AATTTCAGAAACA-TCAGCAGCATAGTTTAGC-GCGTTT----AGACTATACACTTTCTG-TGA--------TTTTGTTTT--AA-GTG-TGCCC--C----------CCCCCCCC----CC-CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTA--------ACACCTTTGAAC-TGCTCGATGCT-ATCATTTCAATTTCTTTTATA-TTATTTTTATTTTAATTAAATTTTAACAGAGAAATTTAT-GA-AATAAATAAATA------------AAATAAAAAATTAAAAAAA--------CCACTAAA------------------GCAC-CATCCCATTCTCAAATAAGATAA-TCTACTGC-ACTGGCTCTCT-AAGC-----TTTTTCAAAAAGCTA
gi|4 : TCGTATAAAGACTTTA--TAAAAGTATGTTT-TA--CAATCAAAA--CAATACAT----TTA-CACGA--GGATT-AT-TA-CCTTTACACAAAA-TATTTA-A-TGATTG---ATTTATT-CATGC-TTTCAAACTT--G-GTT---TATAACTGCCCCTCC
gi|1 : gtgcgcgtttttcgtcagtgccgcggcactgactaaaatttgttgtgagtataaactttgccaatgcgcatccgcgtagatggatcctgggtaaaataattctatatataaaagtcgcgtccatcaaggtaacaccggggttacacgtgtttacagaaaatccataacgcggtgcgtgtcttaattgatgtgtaacggcttgcgcgtacagctatgtggagacttccacatagattataatcgggtacaatctttttagcattagttattttaaggtgtctgtatgcaagtattCGTAAAAAGACCTTTAT---AAAGATCTTTCTAACCAATCAAAGACCC-TATAT----TTAGCAGGAGGAAATTCATATACC-TTTACAC-AAAATATTCTAA-TGATTGA-TATTT-TTTCATGCTTT-CAAACTTCTGCGTTTATTAT----GCCCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAATTTTGT-CAGCGCA-CAT--ACACACACTCT--TAACCAGT--TAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCACGTAAT-GAAGC-GTTAATG-AATTCAAT---AAGA--AATTGTCCCTGAAACATTT-CTTTAG--GTTAATCCACATCTCTCTCATCATCACAATTCTAGAAACAATCAGCAGC-TAGTT-AG--GCGTTTCTTCAGAC-ATACACTTTCT--TGAATCTTATTTTTTTTTTT--AACGTG--GCTC--C----------CCCCTCCCTTCTCC-TTCTCTAAAAAA-TC-AG-TC-C------TA-CGCCTCT-----TA---TA-TTACATT---AACATAAATCAAAACACTTTTC--AAAATTACTACAGCCTTGAAAACTTTGAAC-TGCTCGAATCTAATCA-TTCAATT--CTTTATAGTTATTTATATTT--ATTA---TTTAAAGGAGAATTATAT-AT-AATAAATAAATA------------ATATTAAAA---AAAACAA--------CAAT--AA------------------G--C-CATCC----TTCAAATAAGATAATTCTCCTGCGACTGACCTTCTAAAGCTATTTTTTTTCAAAA
gi|5 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtcAGATGTTT-TA--CAATCAAAGACCAATACATAAATTTA-CACGAGGAAATT-ATATAGCCTTTACAC-AAA-TATTT--AATGATTGA-TATTT-TT-CATGC-TTTCAAACGT--G-GTTTA-TA--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGTTTGT-CAGCGCA-CA--TACACACACt
gi|16 : GGGGAGACA-TATTGTTTTT-----------GTATGTCTGTCACAAAGTTTGT-CAGCGCAatgtcattgacca
gi|14 : TTTGGCCTG-TCTGTGGGTCCGTCACAAAGTTTGT-CAGCGC--CACATACA-ACACCTCTTTAAC-AGTA
gi|3 : AAATGAAGCTGTTAATGGA--TTA--T---AGA--AAT-TGTCTGAAA-CATTTTTT---AGTTTTAATC-ACAAC--------------AAATTCAGAAACA-TCAGCAGC-TAGTT-AGTTGCGTTT----AGACTATACA-TTTCTG-TGA--------TTTT--TTT--AA-GTG-TGCCC--C----------CCGCCC-----------TTC---AAAA-TC-AG-TCGC------TAACGTCTCTG----TA---T--TACCATT--TAACATAAATAAA--CACTTTTCCAAAAATTAT----------ATAC--TTGAACATGCTCGATGCT-ATCATTTTTAATTCTTT-AT--TTATTTTTATTT-AATTAA----TAA-AGAGAAATT-ATAGATAATAAATAAATAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAA-TCTACTGC--CTGACTCTCT-AAGC-----TTTTTTCAAAGGTTA
gi|15 : atccaccgACTTTCTG-TGA--------TTTT--TTT--AA-G-------C--T----------TCGCTCCC----CC-CTTTC---AAA--TC-AG-TC-C------TA-Caac
gi|11 : CTTTCTGCTGA--------TTTT--TTA--AA-GTT-TGCCC--C----------CCCCCCAC--------TTTC---AAAA-TC-AG-TC-CCT----TA-CGCCTCTG----
gi|8 : CTTTCTG-TGA--------TTTT--TTT--AA--TG-TGCCC--CCCCCCCCCCCCCCCCCCC----CA-CTTTC----AAA-TC-AGTTC-C------TA-CGCATCTG----gt
gi|6 : TCTG-TGA--------TTT-ATTTT--TA-GTT-TGCCC--C----------TCC-------------TTTC---AAAA-TC-AG-CC-C------TA-CGCCTCTG----TAAAGTACTATCGTTA-TAACACA
gi|12 : --------TTTTTTCTT--TA-GTGGTGCCA--C----------CACCCCCC----CCACTTTC---AAAA-TC-AG-TC-C------TA-CGCCT-TG----CA---Tcacgcgcact
gi|7 : agctTTATTTTTGAA-GT--TGCCCGCC----------CCCCCCCC----CC-CTTTC---AAAA-TCGGG-TC-C------TA-CAGCTCAG----TG----A-TACTACT--tt
gi|10 : CC--C----------CCCCCCCC----CC-CCTCA---AAAA-CC-AG-TC-C------TA-CGCCTATG-------------ACAATT----GCCTAAATAGAAA-A-TTTTC--AAAacaaat
gi|18 : ----------CCCCCCCC----CC-CTTTC---AAAA-T--------C------TA-CGCCTCTG----
gi|9 : agtttgCCCCCCC----CC-CTTTC---AAAAGTC-AG-TC-C------TA-CGCCTCTGACGTTA---TA-TAAGAATGGTAGCGTAGACAAGAAaaatg
gi|17 : tCCCCCC----CC-CTTTC---AAAA-TC-AG-TC-CTATACGTA-CGCCTCTG----
gi|19 : -CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---gta
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTTAAGTGTTCAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 11111111111111
lowQualScore : 1111 1 11 2222 1 1 1 1 2 2222 1 1 1 11 1 33333333 111111111111111 1 3333 1111 11 77777777777 2 22 2 222 1 33333 11 11 11 222 2 00000000000000 2 1 1 22 4444 2222222222 1111111111 111111 111111 222 11 666666666666 2 11 22 22 22 11 1 33 222222222222222 11 333333 222 1 2 2 2 4444 1
lowQualScore : 1 0 4444 2 0 33 3 3 1111 0 3 0 3 0 0 0 4444 0 3 0 0 3 33 0 99999999 1 555555555555555 0 99999999 11 8 8 88 0000 2 3333 33 999 00000000000 0 77 0 333 4 7 6 9999 00000 88 22 88 44 222 3 33333333333333 1 0 3 3 3 77 4444 7 5 3333333333 4 4 4 88 55 6666 5555555555 555 2 2 2 2 222222 2 6666 555555 000 5 2 2 33 6 999999999999 3 22 44 7 1 1 22 22 1 00 7 88 7 0 1 4 33 777777777777777 55 88 1 2 7 333333 000 3 7 3 1 3 0 3 4444 4
lowQualScore : . . .... . . .. . . .... . . . . . . . .... . . . . . .. . ........ . ............... . ........ .. . . .. .... . .... .. ... ........... . .. . ... . . . .... ..... .. .. .. .. ... . .............. . . . . . .. .... . . .......... . . . .. .. .... .......... ... . . . . ...... . .... ...... ... . . . .. . ............ . .. .. . . . .. .. . .. . .. . . . . .. ............... .. .. . . . ...... ... . . . . . . . .... .
lowQualScore : 0 7 7777 5 0 88 2 2 2222 0 2 0 2 0 0 0 8888 0 2 0 0 0 88 0 22222222 0 000000000000000 8 66666666 88 0 0 88 0000 5 7777 33 888 00000000000 0 55 0 333 0 3 7 0000 00000 33 00 77 00 000 3 00000000000000 0 7 7 3 3 77 0000 3 7 2222222222 4 6 4 33 55 5555 4444444444 000 9 9 9 9 111111 9 5555 000000 999 6 5 5 88 7 333333333333 7 00 77 3 0 0 33 33 0 77 3 33 3 7 0 0 77 000000000000000 00 00 0 5 3 777777 777 3 3 7 0 3 7 7 7777 0
consensus : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATTT--AATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATT---A--TGCCCCTCCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTC-ACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCTTTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCACGTAA-TGAAGCTGTTAATGGAATTCAATT--A-AGA--AATTGTCCC-GAAACATTTTCTTTAGGT-TTAATC-ACACC------------ACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------T-ACGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTACA------A-A-CTTTGAAC-TGCTCGATGCTAATCATTTCAATTT-CTTTATA-TTATTTTTATTT-AATTAA--TTTAAAAGAGAAAT-TATA--TAATAAATAAATAAAA--AAAAAAAA-A-NAAAAAAAAAAANNAAAAAAAACCCACNAAAAAAAAACAA-CAA--TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
Reference ( family-446 ) : NTCGTANAAAGACCTTNATTAAAAAGATGTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAA-TATTT--A-TGATTGA-TATTTTT-CATGCTTT-CAAACTT--G-GTTTAT----A--TGCCCCTNCCNNNNNNNNNNNNNNNGGGGAGACANTATTGTTTTTTGGCCTG-TCTGTGNGTCCGTC-ACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCCCTTTAACCAGTATAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCACGTAANTGAAGCTGTTAATGGAATTCAATT--A-AGA--AATTNNCCCGGAAACATTTTCTTTAGGTNTTAATCCACANCTCTCTCATCATCACAANTCCAGAAACAATCAGCAGC-TAGTT-AGTTGCGTTTCTTCAGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------T-ACGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTACAGCCTTGANANCTTTGAACATGCTCGANNCTAATCATTTCNANTTCCTTTATAGTTATTTNTATTT-AATTAA--TTTAAAGGAGAANTNTATAGNTAATAAATAAATAAAAAAAAAAAAAANACNAAAAAAAAAAANAAAAAAAAACCNACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAATTCTNCTGCGACTGACCCTCTAAAGCTATTTTTTTTCNAAAGGTTA
gi|1 : CGTAAAAAGACCTTTAT---AAAGATCTTTCTAACCAATCAAAGACCC-TATAT----TTAGCAGGAGGAAATTCATATA-CC-TTTACACAAAATATTCTAA-TGATTGA-TATTTTTTCATGCTTT-CAAACTTCTGCGTTTATT---A--TGCCCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNACAAATTTTGT-CAGCGCA-CA--T-ACACACACTC--TTAACCAGT-TAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCACGTAA-TGAAGC-GTTAATG-AATTCAAT---A-AGA--AATTGTCCCTGAAACATTT-CTTTAGGT--TAATCCACATCTCTCTCATCATCACAATTCTAGAAACAATCAGCAGC-TAGTT-AG--GCGTTTCTTCAGAC-ATACACTTTCT--TGAATCTTATTTTTTT-TTTTAACGTG--GCTC--CCCCCTCCCTTCTCC----------TTCTCTAAAAAA-TC-AG-TC-C------T-ACGCCTCT-----TA---TA-TTACATT---AACATAAATCAAAACACTTTTC--AAAATTACTACAGCCTTGAAAACTTTGAAC-TGCTCGAATCTAATCA-TTCAATT--CTTTATAGTTATTTATATTT--ATT-A--TTTAAAGGAGAATTATATA--TAATAAATAAATAATATTAAAAAAAACAACAATAA
gi|1 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtcAAAAAAAACAA-CAA--TAAGC---CATCCT-T---CAAATAAGATAATTCTCCTGCGACTGACCTTCTAAAGCTATTTTTTTTCAAAAgccatccttcaaataagataattctcctgcgactgaccttctaaagctattttttttcaaaat
gi|10 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtccgtaaaaagacctttataaagatctttctaaccaatcaaagaccctatatttagcaggaggaaattcatatacctttacacaaaatattctaatgattgatattttttcatgctttcaaacttctgcgtttattatgcccctaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaattttgtcagcgcacatacacacactcttaaccagttagggaaaaagttttcaatgagtattgtttcaaatccacgtaatgaagcgttaatgaattcaataagaaattgtccctgaaacatttctttaggttaatccacatctctctcatcatcacaattctagaaacaatcagcagctagttaggcgtttcttcagacatacactttcttgaatcttatttttttttttaacgtggctcccccctcccttctccttctctaaaaaatcagtcctacgcctcttatattacattaacataaatcaaaacacttttcaaaattactacagccttgaaaactttgaactgctcgaatctaatcattcaattctttatagttatttatatttattatttaaaggagaattatatataataaataaataatattCC--CCCCCCCCC----CC----------CCTCA---AAAA-CC-AG-TC-C------T-ACGCCTATG-------------ACAATT----GCCTAAATAGAAA-A-TTTTC--AAAt
gi|11 : CTTTCTGCTGA---------TTTT-TTA-AA-GTT-TGCCC--CCCCCCCAC-----------------TTTC---AAAA-TC-AG-TC-CCT----T-ACGCCTCTG----
gi|12 : ---------TTTT-TCTTTA-GTGGTGCCA--CCACCCCCC----CCA---------CTTTC---AAAA-TC-AG-TC-C------T-ACGCCT-TG----CA---Tgt
gi|14 : agcttTTTGGCCTG-TCTGTGGGTCCGTC-ACAAAGTTTGT-CAGCGC--CACAT-ACA-ACACCTCTTTAA-CAGTAtt
gi|15 : ACTTTCTG-TGA----------TTT-TTTTAA-G-------C--TTCGCTCCC----CC----------CTTTC----AAA-TC-AG-TC-C------T-AC
gi|16 : GGGGAGACA-TATTGTTTTT-----------GTATGTCTGTC-ACAAAGTTTGT-CAGCGCA-
gi|17 : CCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-CTATACGT-ACGCCTCTG----
gi|18 : CCCCCCCC----CC----------CTTTC---AAAA-T--------C------T-ACGCCTCTG----gta
gi|19 : agtttg----------CTTTC---AAAA-TC-AG-TC-C------T-ACGCCTCTG----TA---aaatg
gi|2 : TCGTAAAAGAACTTTAATTAAAAAGATCTTT-TA--CAATCAAAGACCAATATAT----TTA-CACGAAGGAATT-ATATA-CCCTTTACATAAA-TATTT--A-TGATTGAATATTTTT-CATGCTTTTCAAACGT--G-GTTTACTATAA--TGCCCCTCCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTGGTCTGTAGGTCCGTC-ACAAAGTTTGTACAGCGCATCAT-TTACACACACCTCT--AAC-AGTACTAGGAAAAAATTGATACGCCAGAAATTGAGTAAATTGTGTTCAAATTTCCTACGTAATTGAAGCTGTTAATGGAATTTAATTGCA-AGATAAATAGGTCTGAAAACATTTTCTTTAAACGTTAATC-ACACC--------------AATTTCAGAAACA-TCAGCAGCATAGTTTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTTGTTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------T-ACGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTA--------ACACCTTTGAAC-TGCTCGATGCTA-TCATTTCAATTTCTTTTATA-TTATTTTTATTTTAATTAAATTTTAACAGAGAAATTTATG------AAATAAATAAA--------------TAAAATAAAAAATTAAAAAAA--CCACTAAA------------------GCAC-CATCCCATTCTCAAATAAGATAA-TCTACTGC-ACTGGCTCTCT-AAGC-----TTTTTCAAAAAGCTAcgt
gi|3 : cAT---CCACCGAAATGAAGCTGTTAATGGA------TT--ATAGA--AATTGTCT--GAAACATTTT--TTAG-TTTTAATC-ACA--------------ACAAATTCAGAAACA-TCAGCAGC-TAGTT-AGTTGCGTTT----AGACTATACA-TTTCTG-TGA----------TTT-TTTTAA-GTG-TGCCC--CCCGCCC--------------------TTC---AAAA-TC-AG-TCGC------TAACGTCTCTG----TA---T--TACCATT--TAACATAAAT--AAACACTTTTCCAAAAATTA-TATA-----------CTTGAACATGCTCGATGCT-ATCATTTTTAATT-CTTTAT--TTATTTTTATTT-AATTAA--T---AAAGAGAAAT-TATAGATAATAAATAAATAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAA-TCTACTGC--CTGACTCTCT-AAGC----TTTTTTC-AAAGGTTA
gi|4 : TCGTATAAAGACTTTA--TAAAAGTATGTTT-TA--CAATCAAAA--CAATACAT----TTA-CACGAGGA--TT-AT-TA-CC-TTTACACAAAATATTT--AATGATTGA-T-TTATT-CATGCTTT-CAAACTT--G-GTTTAT----AACTGCCCCTCCaac
gi|5 : gtgcgcgtttttcgtcagtgccgcggcactgactaaaatttgttgtgagtataaactttgccaatgcgcatccgcgtagatggatcctgggtaaaataattctatatataaaagtcgcgtccatcaaggtaacaccggggttacacgtgtttacagaaaatccataacgcggtgcgtgtcttaattgatgtgtaacggcttgcgcgtacagctatgtggagacttccacatagattataatcgggtacaatctttttagcattagttattttaaggtgtctgtatgcaagtattAGATGTTT-TA--CAATCAAAGACCAATACATAAATTTA-CACGAGGAAATT-ATATAGCC-TTTACACAAA-TATTT--AATGATTGA-TATTTTT-CATGCTTT-CAAACGT--G-GTTTAT----A-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNN-ACAAAGTTTGT-CAGCGCA-CA--T-ACACACAC
gi|6 : TCTG-TGA---------TTTA-TTTTTA-GTT-TGCCC--CTCC----------------------TTTC---AAAA-TC-AG-CC-C------T-ACGCCTCTG----TAAAGTACTATCGTTA-TAACACAatgtcattgacca
gi|7 : TT-TTTGAA-GT--TGCCCGCCCCCCCCCC----CC----------CTTTC---AAAA-TCGGG-TC-C------T-ACAGCTCAG----TG----A-TACTACT--cacgcgcact
gi|8 : ttaCTTTCTG-TGA---------TTTT-TTT--A-ATG-TGCCC--CCCCCCCCC----CCCCCCCCCCCACTTTC----AAA-TC-AGTTC-C------T-ACGCATCTG----acaaat
gi|9 : CCCCCCC----CC----------CTTTC---AAAAGTC-AG-TC-C------T-ACGCCTCTGACGTTA---TA-TAAGAATGGTAGCGTAGACAAGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAGTGTTCAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 111111111111111111
lowQualScore : 111 1 11 2222 1 1 1 1 1 1 1 1 11 1 33333 1 3333 2222 11 222222 1 11 1 222 1 1 33333 11 1 222 11 1 77777777777777 1 1 1 1 22 2222 222222222 1 1111111111 111111 111111 222 11 666666666666 1 2 1 1 22 22 11 1 11 3333333333333333333333 11 000000000000000000 1 22 1 22 1 33333
lowQualScore : 333 1 0 33 3 3 1111 0 3 0 3 0 0 3 3 0 3 0 3 0 0 1 33 0 7 00000 0 8 99999999 8 88 0000 2 8 6666 55 7 1 88 1 888888 5 88 5 333 3 3 7 6 9999 00000 88 3 999 44 3 3 7 22222222222222 2 6 3 3 3 55 8888 7 5 000000000 4 0 4 88 55 6666 5555555555 555 2 2 2 2 222222 2 6666 555555 000 0 2 2 33 6 555555555555 3 3 7 6 3 00 00 7 88 7 3 7 88 7 7777777777777777777777 22 88 1 444444444444444444 3 00 3 00 3 55555 7
lowQualScore : ... . . .. . . .... . . . . . . . . . . . . . . . .. . . ..... . . ........ . .. .... . . .... .. . . .. . ...... . .. . ... . . . . .... ..... .. . ... .. . . . .............. . . . . . .. .... . . ......... . . . .. .. .... .......... ... . . . . ...... . .... ...... ... . . . .. . ............ . . . . . .. .. . .. . . . .. . ...................... .. .. . .................. . .. . .. . ..... .
lowQualScore : 777 0 0 88 2 2 2222 0 2 0 2 0 0 2 2 0 2 0 2 0 0 0 88 0 0 88888 0 2 66666666 0 88 0000 5 8 2222 00 3 0 00 0 555555 5 55 0 333 3 3 3 7 0000 00000 33 3 000 00 7 3 3 77777777777777 0 7 3 3 3 33 3333 3 7 000000000 4 0 4 33 55 5555 4444444444 000 9 9 9 9 111111 9 5555 000000 999 8 5 5 88 7 333333333333 3 7 3 0 3 77 77 3 33 3 3 3 33 3 0000000000000000000000 00 00 0 000000000000000000 3 00 3 77 3 77777 3
consensus : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAACATTTTCTTTAGNT-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTAN--------AA-CTTTGAAC-TGCTCGATGCTA-TCATTTCAA-TTCTTT-ATA-TTATTTTTATTT-AATTAA--TTTAAAAGAGAAAT-TATA--TAATAAATAAATAA----AAAAAAAA-AANAA----AAAAAAAAANNAAAAAAAACCCACNAAAAAAAAACAAACAAACTAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
Reference ( family-446 ) : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCCC-GAAACATTTTCTTTAGGT-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTAC--------AAACTTTGAAC-TGCTCGATGCTAATCATTTCAATTTCTTT-ATA-TTATTTTTATTT-AATTAA--TTTAAAAGAGAAAT-TATA--TAATAAATAAATAA----AAAAAAAAAAANAA----AAAAAAAAANNAAAAAAAACCCACNAAAAAAAAAC-AACAA--TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
gi|1 : CGTAAAAAGACCTTTAT---AAAGATCTTTCTAACCAATCAAAGACCC-TATAT----TTAGCAGGAGGAAATTCATATA-CC-TTTACACAAAATATTCTAATGATTGA-TATTTTTTCATGCTTT-CAAACTTCTGCGTTTATTA-T---GCCCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAATTTTGT-CAGCGCA-CA--T-ACACACAC-TCT--T-AACCAGT-TAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCAC-GTAAT-GAAGC-GTTAATG-AATTCAAT---A-AGA--AAT-TGTCCCTGAAACATTT-CTTTAGGT-T-AATCCACATCTCTCTCATCATCACAATTCTAGAAACAATCAGCAGC-TAGTT-AG--GCGTTTCTTCAGAC-ATACACTTTCT--TGAATCTTATTTTTTT-TTTTAACGTG--GCTC--CCCCCTCCCTTCTCC----------TTCTCTAAAAAA-TC-AG-TC-C------TA-CGCCTCT-----TA---TA-TTACATT---AACATAAATCAAAACACTTTTC--AAAATTACTACAGCCTTGAAAACTTTGAAC-TGCTCGAATCTAATCA-TTCAA-TTCTTT-ATAGTTATTTATATTT--ATT-A--TTTAAAGGAGAATTATATA--TAATAAATAAATAATATTAAAAAAAACAACAA----TAA
gi|1 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtcC-CATCC----TTCAAATAAGATAATTCTCCTGCGACTGACCTTCTAAAGCTATTTTTTTTCAAAAgccatccttcaaataagataattctcctgcgactgaccttctaaagctattttttttcaaaat
gi|10 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtccgtaaaaagacctttataaagatctttctaaccaatcaaagaccctatatttagcaggaggaaattcatatacctttacacaaaatattctaatgattgatattttttcatgctttcaaacttctgcgtttattatgcccctaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaattttgtcagcgcacatacacacactcttaaccagttagggaaaaagttttcaatgagtattgtttcaaatccacgtaatgaagcgttaatgaattcaataagaaattgtccctgaaacatttctttaggttaatccacatctctctcatcatcacaattctagaaacaatcagcagctagttaggcgtttcttcagacatacactttcttgaatcttatttttttttttaacgtggctcccccctcccttctccttctctaaaaaatcagtcctacgcctcttatattacattaacataaatcaaaacacttttcaaaattactacagccttgaaaactttgaactgctcgaatctaatcattcaattctttatagttatttatatttattatttaaaggagaattatatataataaataaataatattaaaaaaaacaacaataagCC--CCCCCCCCC----CC----------CCTCA---AAAA-CC-AG-TC-C------TA-CGCCTATG-------------ACAATT----GCCTAAATAGAAA-A-TTTTC--AAAt
gi|11 : CTTTCTGCTGA---------TTTT-TTA-AA-GTT-TGCCC--CCCCCCCAC-----------------TTTC---AAAA-TC-AG-TC-CCT----TA-CGCCTCTG----
gi|12 : ---------TTTT-TCTTTA-GTGGTGCCA--CCACCCCCC----CCA---------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCT-TG----CA---Tgt
gi|14 : agcttTTTGGCCTG-TCTGTGGGTCCGTCACAAAGTTTGT-CAGCGC--CACAT-ACA-ACACCTCT--TTAA-CAGTAtt
gi|15 : ACTTTCTG-TGA----------TTT-TTTTAA-G-------C--TTCGCTCCC----CC----------CTTTC----AAA-TC-AG-TC-C------TA-C
gi|16 : GGGGAGACA-TATTGTTTTT-----------GTATGTCTGTCACAAAGTTTGT-CAGCGCA-
gi|17 : CCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-CTATACGTA-CGCCTCTG----
gi|18 : CCCCCCCC----CC----------CTTTC---AAAA-T--------C------TA-CGCCTCTG----gta
gi|19 : agtttg----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---aaatg
gi|2 : TCGTAAAAGAACTTTAATTAAAAAGATCTTT-TA--CAATCAAAGACCAATATAT----TTA-CACGAAGGAATT-ATATA-CCCTTTACATAAA-TATT-TA-TGATTGAATATTTTT-CATGCTTTTCAAACGT--G-GTTTACTA-TAATGCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTGGTCTGTAGGTCCGTCACAAAGTTTGTACAGCGCATCAT-TTACACACACCTCT----AAC-AGTACTAGGAAAAAATTGATACGCCAGAAATTGAGTAAATTGTGTTCAAATTTCCTAC-GTAATTGAAGCTGTTAATGGAATTTAATTGCA-AGATAAATAGGTCTG-AAAACATTTTCTTTAAACGTTAATC------------A-CACCA--ATTTCAGAAACA-TCAGCAGCATAGTTTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTTGTTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTAA--------CACCTTTGAAC-TGCTCGATGCTA-TCATTTCAATTTCTTTTATA-TTATTTTTATTTTAATTAAATTTTAACAGAGAAAT-T-TA--TGA--AATAAATAA----A----------TAA----AATAAAAAATTAAAAAAA--CCACTAAA------------------GCAC-CATCCCATTCTCAAATAAGATAA-TCTACTGC-ACTGGCTCTCT-AAGC-----TTTTTCAAAAAGCTAcgt
gi|3 : cAT---CCACCGAAAT-GAAGCTGTTAATGGA------TT--ATAGA--AAT-TGTCT--GAAACATTTT--TTAGTT-TTAATC------------A-CA--ACAAATTCAGAAACA-TCAGCAGC-TAGTT-AGTTGCGTTT----AGACTATACA-TTTCTG-TGA---------TTTT-TTT-AA-GTG-TGCCC--CCCGCCC--------------------TTC---AAAA-TC-AG-TCGC------TAACGTCTCTG----TA---T--TACCATT--TAACATAAATAAA--CACTTTTCCAAAAATTA-TAT--------A---CTTGAACATGCTCGATGCTA-TCATTTTTAATTCTTT-AT--TTATTTTTATTT-AATTAA--T---AAAGAGAAAT-TATAGATAATAAATAAATAA----AAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAA-TCTACTGC--CTGACTCTCT-AAGC----TTTTTTC-AAAGGTTA
gi|4 : TCGTATAAAGACTTTA--TAAAAGTATGTTT-TA--CAATCAAAA--CAATACAT----TTA-CACGAGGA--TT-AT-TA-CC-TTTACACAAAATATT-TAATGATTGA-T-TTATT-CATGCTTT-CAAACTT--G-GTTTATAACT---GCCCCT-CCaac
gi|5 : gtgcgcgtttttcgtcagtgccgcggcactgactaaaatttgttgtgagtataaactttgccaatgcgcatccgcgtagatggatcctgggtaaaataattctatatataaaagtcgcgtccatcaaggtaacaccggggttacacgtgtttacagaaaatccataacgcggtgcgtgtcttaattgatgtgtaacggcttgcgcgtacagctatgtggagacttccacatagattataatcgggtacaatctttttagcattagttattttaaggtgtctgtatgcaagtattAGATGTTT-TA--CAATCAAAGACCAATACATAAATTTA-CACGAGGAAATT-ATATAGCC-TTTACAC-AAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACGT--G-GTTTA-TA-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAAGTTTGT-CAGCGCA-CA--T-ACACACACATGTCATTGACCA
gi|6 : TCTG-TGA---------TTTA-TTTTTA-GTT-TGCCC--CTCC----------------------TTTC---AAAA-TC-AG-CC-C------TA-CGCCTCTG----TAAAGTACTATCGTTA-TAACACA
gi|7 : TT-TTTGAA-GT--TGCCCGCCCCCCCCCC----CC----------CTTTC---AAAA-TCGGG-TC-C------TA-CAGCTCAG----TG----A-TACTACT--cacgcgcact
gi|8 : ttaCTTTCTG-TGA---------TTTT-TTT--A-ATG-TGCCC--CCCCCCCCC----CCCCCCCCCCCACTTTC----AAA-TC-AGTTC-C------TA-CGCATCTG----acaaat
gi|9 : CCCCCCC----CC----------CTTTC---AAAAGTC-AG-TC-C------TA-CGCCTCTGACGTTA---TA-TAAGAATGGTAGCGTAGACAAGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAGTGTTCAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 111 1 11 2222 1 1 1 1 1 1 1 1 11 1 33333 1 3333 2222 11 222222 1 11 1 222 1 1 33333 11 1 111 1 11 1 77777777777777 1 1 1 1 22 2222 222222222 1 1111111111 111111 111111 222 11 1 6666666666 1 1 111 11 22 1 222 88888888888888888888888888888 1 0000000000000000000000000 111 1 1 22 1 33333
lowQualScore : 333 1 0 33 3 3 1111 0 3 0 3 0 0 3 3 0 3 0 3 0 0 1 33 0 7 00000 0 8 99999999 8 88 0000 2 8 6666 55 7 1 88 1 888888 5 88 5 333 3 3 7 6 9999 00000 88 3 999 3 44 1 3 7 22222222222222 2 6 3 3 3 55 8888 7 5 000000000 4 0 4 88 55 6666 5555555555 555 2 2 2 2 222222 2 6666 555555 000 0 2 2 33 6 3 1 8888888888 3 3 666 88 00 3 7 555 7 7 7 55555555555555555555555555555 1 6 22 7777777777777777777777777 999 3 7 3 00 3 55555 7
lowQualScore : ... . . .. . . .... . . . . . . . . . . . . . . . .. . . ..... . . ........ . .. .... . . .... .. . . .. . ...... . .. . ... . . . . .... ..... .. . ... . .. . . . .............. . . . . . .. .... . . ......... . . . .. .. .... .......... ... . . . . ...... . .... ...... ... . . . .. . . . .......... . . ... .. .. . . ... . . . ............................. . . .. ......................... ... . . . .. . ..... .
lowQualScore : 777 0 0 88 2 2 2222 0 2 0 2 0 0 2 2 0 2 0 2 0 0 0 88 0 0 88888 0 2 66666666 0 88 0000 5 8 2222 00 3 0 00 0 555555 5 55 0 333 3 3 3 7 0000 00000 33 3 000 3 00 0 3 3 77777777777777 0 7 3 3 3 33 3333 3 7 000000000 4 0 4 33 55 5555 4444444444 000 9 9 9 9 111111 9 5555 000000 999 8 5 5 88 7 3 0 7777777777 3 3 000 33 77 3 3 777 3 3 3 77777777777777777777777777777 0 0 00 0000000000000000000000000 000 3 3 3 77 3 77777 3
consensus : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNT-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATA--TG--AAATAAATA-AA------AAA-AAATAAAA-AAAAAATTAAAAAAAACCCAC-A----------AACAA--TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
Reference ( family-446 ) : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNT-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-ANA---------ACTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATA--TAATAAATAAATAAAA-----AAAAAAAANAAAAAAAAAAANNAAAAAAAACCCACNAAAAAAAAACAAACAAACTAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
gi|1 : CGTAAAAAGACCTTTAT---AAAGATCTTTCTAACCAATCAAAGACCC-TATAT----TTAGCAGGAGGAAATTCATATA-CC-TTTACACAAAATATTCTAATGATTGA-TATTTTTTCATGCTTT-CAAACTTCTGCGTTTATTA-T---GCCCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAATTTTGT-CAGCGCA-CA--T-ACACACAC-TCT--T-AACCAGT-TAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCAC-GTAAT-GAAGC-GTTAATG-AATTCAAT---A-AGA--AAT-TGTCCCTGAAA-CATTT-CTTTAGGT-T-AATCCACATCTCTCTCATCATCACAATTCTAGAAACAATCAGCAGC-TAGTT-AG--GCGTTTCTTCAGAC-ATACACTTTCT--TGAATCTTATTTTTTT-TTTTAACGTG--GCTC--CCCCCTCCCTTCTCC----------TTCTCTAAAAAA-TC-AG-TC-C------TA-CGCCTCT-----TA---TA-TTACATT---AACATAAATCAAAACACTTTTC--AAAATTACT-ACAGCCTTGAAAACTTTGAAC-TGCTCGAATCTAATCATT-C-AATT--CTTTATAGTTATTTATA-TTTA-TTA---TTTAAAGGAGAA-TTAT-------------ATATAA-----TAAATAAATAATA-------TTAAAAAAAAC----------------AACAA--TAAGC---CATCCT-T---CAAATAAGATAATTCTCCTGCGACTGACCTTCTAAAGCTATTTTTTTTCAAAA
gi|10 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtcCC--CCCCCCCCC----CC----------CCTCA---AAAA-CC-AG-TC-C------TA-CGCCTATG-------------ACAATT----GCCTAAATAGAAA-A-TTTTC--AAAt
gi|11 : CTTTCTGCTGA---------TTTT-TTA-AA-GTT-TGCCC--CCCCCCCAC-----------------TTTC---AAAA-TC-AG-TC-CCT----TA-CGCCTCTG----
gi|12 : ---------TTTT-TCTTTA-GTGGTGCCA--CCACCCCCC----CCA---------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCT-TG----CA---Tgt
gi|14 : agcttTTTGGCCTG-TCTGTGGGTCCGTCACAAAGTTTGT-CAGCGC--CACAT-ACA-ACACCTCT--TTAA-CAGTAtt
gi|15 : ACTTTCTG-TGA----------TTT-TTTTAA-G-------C--TTCGCTCCC----CC----------CTTTC----AAA-TC-AG-TC-C------TA-C
gi|16 : GGGGAGACA-TATTGTTTTT-----------GTATGTCTGTCACAAAGTTTGT-CAGCGCA-
gi|17 : CCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-CTATACGTA-CGCCTCTG----
gi|18 : CCCCCCCC----CC----------CTTTC---AAAA-T--------C------TA-CGCCTCTG----gta
gi|19 : agtttg----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---aaatg
gi|2 : TCGTAAAAGAACTTTAATTAAAAAGATCTTT-TA--CAATCAAAGACCAATATAT----TTA-CACGAAGGAATT-ATATA-CCCTTTACATAAA-TATT-TA-TGATTGAATATTTTT-CATGCTTTTCAAACGT--G-GTTTACTA-TAATGCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTGGTCTGTAGGTCCGTCACAAAGTTTGTACAGCGCATCAT-TTACACACACCTCT----AAC-AGTACTAGGAAAAAATTGATACGCCAGAAATTGAGTAAATTGTGTTCAAATTTCCTAC-GTAATTGAAGCTGTTAATGGAATTTAATTGCA-AGATAAATAGGTCT--GAAAACATTTTCTTTAAACGTTAATC------------A-CACCA--ATTTCAGAAACA-TCAGCAGCATAGTTTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTTGTTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTAACA---------CCTTTGAAC-TGCTCGATGCTA-TCATTTC-AATTTCTTTTATA-TTATTTTTATTTTAATTAAATTTTAACAGAGAAATT-TA--TG--AAATAAAT--------------AAATAAAATAAAAAATTAAAAAAA--CCACTA------------------AAGCAC-CATCCCATTCTCAAATAAGATAA-TCTACTGC-ACTGGCTCTCT-AAGC-----TTTTTCAAAAAGCTAcgt
gi|3 : cAT---CCACCGAAAT-GAAGCTGTTAATGGA------TT--ATAGA--AAT-TGTCT--GAAA-CATTTT--TTAGTT-TTAATC------------A-CA--ACAAATTCAGAAACA-TCAGCAGC-TAGTT-AGTTGCGTTT----AGACTATACA-TTTCTG-TGA---------TTTT-TTT-AA-GTG-TGCCC--CCCGCCC--------------------TTC---AAAA-TC-AG-TCGC------TAACGTCTCTG----TA---T--TACCATT--TAACATAAATAAA--CACTTTTCCAAAAATTA-T-ATA-----------CTTGAACATGCTCGATGCTA-TCATTTTTAATT--CTTTAT--TTATTTTTA-TTTAATTAA--T---AAAGAGAAATTATAGATAATAAATAAATAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAA-TCTACTGC--CTGACTCTCT-AAGC----TTTTTTC-AAAGGTTA
gi|4 : TCGTATAAAGACTTTA--TAAAAGTATGTTT-TA--CAATCAAAA--CAATACAT----TTA-CACGAGGA--TT-AT-TA-CC-TTTACACAAAATATT-TAATGATTGA-T-TTATT-CATGCTTT-CAAACTT--G-GTTTATAACT---GCCCCT-CCaac
gi|5 : gtgcgcgtttttcgtcagtgccgcggcactgactaaaatttgttgtgagtataaactttgccaatgcgcatccgcgtagatggatcctgggtaaaataattctatatataaaagtcgcgtccatcaaggtaacaccggggttacacgtgtttacagaaaatccataacgcggtgcgtgtcttaattgatgtgtaacggcttgcgcgtacagctatgtggagacttccacatagattataatcgggtacaatctttttagcattagttattttaaggtgtctgtatgcaagtattAGATGTTT-TA--CAATCAAAGACCAATACATAAATTTA-CACGAGGAAATT-ATATAGCC-TTTACAC-AAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACGT--G-GTTTA-TA-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAAGTTTGT-CAGCGCA-CA--T-ACACACACATGTCATTGACCA
gi|6 : TCTG-TGA---------TTTA-TTTTTA-GTT-TGCCC--CTCC----------------------TTTC---AAAA-TC-AG-CC-C------TA-CGCCTCTG----TAAAGTACTATCGTTA-TAACACA
gi|7 : TT-TTTGAA-GT--TGCCCGCCCCCCCCCC----CC----------CTTTC---AAAA-TCGGG-TC-C------TA-CAGCTCAG----TG----A-TACTACT--cacgcgcact
gi|8 : ttaCTTTCTG-TGA---------TTTT-TTT--A-ATG-TGCCC--CCCCCCCCC----CCCCCCCCCCCACTTTC----AAA-TC-AGTTC-C------TA-CGCATCTG----acaaat
gi|9 : CCCCCCC----CC----------CTTTC---AAAAGTC-AG-TC-C------TA-CGCCTCTGACGTTA---TA-TAAGAATGGTAGCGTAGACAAGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAGTGTTCAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 111 1 11 2222 1 1 1 1 1 1111 1 111 1 33333 1 3333 2222 11 222222222 11 1 222 1 1 222222222222 11 1 111 1 222 1 666666666666 1 1 1 1 22 2222 222222222 1 1111111111 111111 111111 11 11 1 666666666666 1 1 22 11 22 1 11 1111111 000000000000000000000000 9999999999999999999999999 1 22 1 22 1 33333
lowQualScore : 333 1 0 33 3 3 1111 0 3 0 3 0 0 3 3 0 3 4444 0 444 0 7 00000 0 8 99999999 8 88 0000 2 2 0000 55 7 1 88 1 666666666 88 5 333 3 3 7 6 888888888888 88 3 999 3 7 6 666 3 888888888888 2 6 3 3 3 55 8888 7 5 000000000 4 0 4 88 55 44 5555555555 77777 2 2 2 2 222222 2 6666 555555 3 33 0 2 2 33 6 3 222222222222 7 3 3 00 88 00 3 7 7 88 7 7 7 9999999 222222222222222222222222 2222222222222222222222222 6 3 00 3 00 3 55555 7
lowQualScore : ... . . .. . . .... . . . . . . . . . . .... . ... . . ..... . . ........ . .. .... . . .... .. . . .. . ......... .. . ... . . . . ............ .. . ... . . . ... . ............ . . . . . .. .... . . ......... . . . .. .. .. .......... ..... . . . . ...... . .... ...... . .. . . . .. . . ............ . . . .. .. .. . . . .. . . . ....... ........................ ......................... . . .. . .. . ..... .
lowQualScore : 777 0 0 88 2 2 2222 0 2 0 2 0 0 2 2 0 2 2222 0 888 0 0 88888 0 2 66666666 0 88 0000 5 5 2222 00 3 0 00 0 000000000 55 0 333 3 3 3 7 000000000000 33 3 000 3 3 7 777 3 333333333333 0 7 3 3 3 33 3333 3 7 000000000 4 0 4 33 55 22 4444444444 11111 9 9 9 9 111111 9 5555 000000 9 66 8 5 5 88 7 3 777777777777 3 3 3 77 33 77 3 3 3 33 3 3 3 3333333 333333333333333333333333 0000000000000000000000000 7 3 00 3 77 3 77777 3
consensus : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TA-TTTTTCATGCTTT-CAAAC--NTG-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNC-TTAAT-CA------------CACCACAATTTCAGAAAC-ATCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC--CC----------CTTTC-----AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-AC----------A-CTTTGAAC-TGCTCGATGCT-ATCA-TTTCAATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTAT--ATA--AAATAAAT------AA---------ATAAAA-AAAAAATTAAAAAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
Reference ( family-446 ) : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TA-TTTTTCATGCTTT-CAAAC--NTG-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNT-TTAAT-CA------------CACCACAATTTCAGAAAC-ATCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC--CC----------CTTTC-----AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-AC----------A-CTTTGAAC-TGCTCGATGCT-ATCA-TTTCAATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTAT--ATG--AAATAAATAAAAAAAA---------ATAAAA-AAAAAATTAAAAAAAACCCAC-------AAACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
gi|1 : CGTAAAAAGACCTTTAT---AAAGATCTTTCTAACCAATCAAAGACCC-TATAT----TTAGCAGGAGGAAATTCATATA-CC-TTTACACAAAATATTCTAATGATTGA-TATTTTTTCATGCTTT-CAAACTTCTGCGTTTATTA-T---GCCCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAATTTTGT-CAGCGCA-CA--T-ACACACA-CTC---TTAACCAGT-TAGGGAAAAAGTT--TTC-----AA--TGAGT--ATTGT-TTCAAAT---CCAC-GTAAT-GAAGC-GTTAAT-GAATTCAA-T--A-AGA--AAT-TGTCCCTGAAA-CA-TTTCTTTAGG--TTAATCCACATCTCTCTCATCATCACAATTCTAGAAACAATCAGCAGC-TAGTT-AG--GCGTTTCTTCAGAC-ATACACTTTCT--TGAATCTTATTTTTTT-TTTTAACGTG--GCTC--CCCCCTCCCTTCT----------CCTTCTCTAAAAAA-TC-AG-TC-C------TA-CGCCTCT-----TA---TA-TTACA-T--TAACATAAATCAAAACACTTTTC--AAAATTACT-ACAGCCTTGAAAA-CTTTGAAC-TGCTCGAATCTAATCA--TTCAATT--CTTTATAGTTATTTATA-TTT-ATT-A--TTTAAAGGAG-AATTAT--ATA--TAATAAAT------AA---------AT-------AATATTAAAAAAAAC------------AACAA------TAAG--C-CATCC----TTCAAATAAGATAATTCTCCTGCGACTGACCTTCTAAAGCTATTTTTTTTCAAAA
gi|10 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtcCC--CCCCCCCCC--CC----------CCTCA-----AAAA-CC-AG-TC-C------TA-CGCCTATG-------------ACAATT----GCCTAAATAGAAA-A-TTTTC--AAAt
gi|11 : CTTTCTGCTGA---------TTTT-TTA-AA-GTT-TGCCC--CCCCCCCAC---------------TTTC-----AAAA-TC-AG-TC-CCT----TA-CGCCTCTG----
gi|12 : ---------TTTT-TCTTTA-GTGGTGCCA--CCACCCCCC--CCA---------CTTTC-----AAAA-TC-AG-TC-C------TA-CGCCT-TG----CA---Tgt
gi|14 : agcttTTTGGCCTG-TCTGTGGGTCCGTCACAAAGTTTGT-CAGCGC--CACAT-ACA-ACACCTCT--TTAA-CAGTAtt
gi|15 : ACTTTCTG-TGA----------TTT-TTTTAA-G-------C--TTCGCTCCC--CC----------CTTTC------AAA-TC-AG-TC-C------TA-C
gi|16 : GGGGAGACA-TATTGTTTTT-----------GTATGTCTGTCACAAAGTTTGT-CAGCGCA-
gi|17 : CCCCCC--CC----------CTTTC-----AAAA-TC-AG-TC-CTATACGTA-CGCCTCTG----
gi|18 : CCCCCCCC--CC----------CTTTC-----AAAA-T--------C------TA-CGCCTCTG----gta
gi|19 : agtttg----------CTTTC-----AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---aaatg
gi|2 : TCGTAAAAGAACTTTAATTAAAAAGATCTTT-TA--CAATCAAAGACCAATATAT----TTA-CACGAAGGAATT-ATATA-CCCTTTACATAAA-TATT-TA-TGATTGAATA-TTTTTCATGCTTTTCAAAC--GTG-GTTTACTA-TAATGCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTGGTCTGTAGGTCCGTCACAAAGTTTGTACAGCGCATCAT-TTACACACACCTCT----AAC-AGTACTAGGAAAAAATTGATACGCCAGAAATTGAGTAAATTGTGTTCAAATTTCCTAC-GTAATTGAAGCTGTTAATGGAATTTAATTGCA-AGATAAATAGGTCT--GAAAACATTTTCTTTAAACGTTAAT-CA------------CACCA--ATTTCAGAAAC-ATCAGCAGCATAGTTTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTTGTTTTAA-GTG-TGCCC--CCCCCCCCC--CC----------CTTTC-----AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTAAC----------ACCTTTGAAC-TGCTCGATGCT-ATCA-TTTCAATTTCTTTTATA-TTATTTTTATTTTAATTAAATTTTAACAGAGAAATT-T--ATG--AAATAAAT------AA---------ATAAAATAAAAAATTAAAAAAA--CCAC-------TA-----------AAGCAC-CATCCCATTCTCAAATAAGATAA-TCTACTGC-ACTGGCTCTCT-AAGC-----TTTTTCAAAAAGCTAcgt
gi|3 : cAT---CCACCGAAAT-GAAGCTGTTAATGGA------TT--ATAGA--AAT-TGTCT--GAAA-CATTTT--TTAGTT-TTAAT-CA------------CA--ACAAATTCAGAAAC-ATCAGCAGC-TAGTT-AGTTGCGTTT----AGACTATACA-TTTCTG-TGA---------TTTT-TTT-AA-GTG-TGCCC--CCCGCCC------------------TTC-----AAAA-TC-AG-TCGC------TAACGTCTCTG----TA---T--TACCATT--TAACATAAATAAA--CACTTTTCCAAAAATTA-T-AT----------A-CTT-GAACATGCTCGATGCT-ATCATTTTTAATT--CTTTAT--TTATTTTTA-TTTAATTAA--T---AAAGAGAAATTATAGATAATAAATAAATAAAAAAAAAAAAAAAACAAAAAA-AAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAA-TCTACTGC--CTGACTCTCT-AAGC----TTTTTTC-AAAGGTTA
gi|4 : TCGTATAAAGACTTTA--TAAAAGTATGTTT-TA--CAATCAAAA--CAATACAT----TTA-CACGAGGA--TT-AT-TA-CC-TTTACACAAAATATT-TAATGATTGA-T--TTATTCATGCTTT-CAAAC--TTG-GTTTATAACT---GCCCCT-CCaac
gi|5 : gtgcgcgtttttcgtcagtgccgcggcactgactaaaatttgttgtgagtataaactttgccaatgcgcatccgcgtagatggatcctgggtaaaataattctatatataaaagtcgcgtccatcaaggtaacaccggggttacacgtgtttacagaaaatccataacgcggtgcgtgtcttaattgatgtgtaacggcttgcgcgtacagctatgtggagacttccacatagattataatcgggtacaatctttttagcattagttattttaaggtgtctgtatgcaagtattAGATGTTT-TA--CAATCAAAGACCAATACATAAATTTA-CACGAGGAAATT-ATATAGCC-TTTACAC-AAATATT-TAATGATTGA-TA-TTTTTCATGCTTT-CAAAC--GTG-GTTTA-TA-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAAGTTTGT-CAGCGCA-CA--T-ACACACACATGTCATTGACCA
gi|6 : TCTG-TGA---------TTTA-TTTTTA-GTT-TGCCC--CTCC--------------------TTTC-----AAAA-TC-AG-CC-C------TA-CGCCTCTG----TAAAGTACTATCGTTA-TAACACA
gi|7 : TT-TTTGAA-GT--TGCCCGCCCCCCCCCC--CC----------CTTTC-----AAAA-TCGGG-TC-C------TA-CAGCTCAG----TG----A-TACTACT--cacgcgcact
gi|8 : ttaCTTTCTG-TGA---------TTTT-TTT--A-ATG-TGCCC--CCCCCCCCC--CCCCCCCCCCCACTTTC------AAA-TC-AGTTC-C------TA-CGCATCTG----acaaat
gi|9 : CCCCCCC--CC----------CTTTC-----AAAAGTC-AG-TC-C------TA-CGCCTCTGACGTTA---TA-TAAGAATGGTAGCGTAGACAAGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAGTGTTCAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 11 2222 1 1 1 1 1 1 1 1 11 1 33333 1 3333 2222 11 222222 1 11 1 222 1 1 33333 11 1 111 1 11 222 77777777777777 1 1 1 1 22 2222 222222222 1 1111111111 111111 111111 222 11 1 7777777777 1 1 111 11 22 1 222 333333333333333333333333333333333333333333333333333333333333333 111 1 1 22 1 33333
lowQualScore : 333 1 0 33 3 3 1111 0 3 0 3 0 0 3 3 0 3 0 3 0 0 1 33 0 7 00000 0 8 99999999 8 88 0000 2 8 6666 55 7 1 88 1 888888 5 88 5 333 3 3 7 6 9999 00000 88 3 999 3 44 666 22222222222222 2 6 3 3 3 55 8888 7 5 000000000 4 0 4 88 55 6666 5555555555 555 2 2 2 2 222222 2 6666 555555 000 0 2 2 33 6 3 1111111111 7 3 3 666 88 00 3 7 555 7 7 7 8 555555555555555555555555555555555555555555555555555555555555555 999 3 7 3 00 3 55555 7
lowQualScore : ... . . .. . . .... . . . . . . . . . . . . . . . .. . . ..... . . ........ . .. .... . . .... .. . . .. . ...... . .. . ... . . . . .... ..... .. . ... . .. ... .............. . . . . . .. .... . . ......... . . . .. .. .... .......... ... . . . . ...... . .... ...... ... . . . .. . . .......... . . . ... .. .. . . ... . . . . ............................................................... ... . . . .. . ..... .
lowQualScore : 777 0 0 88 2 2 2222 0 2 0 2 0 0 2 2 0 2 0 2 0 0 0 88 0 0 88888 0 2 66666666 0 88 0000 5 8 2222 00 3 0 00 0 555555 5 55 0 333 3 3 3 7 0000 00000 33 3 000 3 00 333 77777777777777 0 7 3 3 3 33 3333 3 7 000000000 4 0 4 33 55 5555 4444444444 000 9 9 9 9 111111 9 5555 000000 999 8 5 5 88 7 3 7777777777 3 3 3 000 33 77 3 3 777 3 3 3 3 333333333333333333333333333333333333333333333333333333333333333 000 3 3 3 77 3 77777 3
consensus : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNC-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATATAATAAATAAATA------------------AAA-AA-AAAATTAAAAAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
Reference ( family-446 ) : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNC-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATAAAATAAATAAATA------------------AAA-AA-AAAATTAAAAAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
gi|1 : CGTAAAAAGACCTTTAT---AAAGATCTTTCTAACCAATCAAAGACCC-TATAT----TTAGCAGGAGGAAATTCATATA-CC-TTTACACAAAATATTCTAATGATTGA-TATTTTTTCATGCTTT-CAAACTTCTGCGTTTATTA-T---GCCCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAATTTTGT-CAGCGCA-CA--T-ACACACAC-TCT--T-AACCAGT-TAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCAC-GTAAT-GAAGC-GTTAATG-AATTCAAT---A-AGA--AAT-TGTCCCTGAAA-CATTT-CTTTAGG--TTAATCCACATCTCTCTCATCATCACAATTCTAGAAACAATCAGCAGC-TAGTT-AG--GCGTTTCTTCAGAC-ATACACTTTCT--TGAATCTTATTTTTTT-TTTTAACGTG--GCTC--CCCCCTCCCTTCTCC----------TTCTCTAAAAAA-TC-AG-TC-C------TA-CGCCTCT-----TA---TA-TTACATT---AACATAAATCAAAACACTTTTC--AAAATTACT-ACAGCCTTGAAAACTTTGAAC-TGCTCGAATCTAATCATT-C-AATT--CTTTATAGTTATTTATA-TTTA-TTA---TTTAAAGGAGAA-TTATATATAATAAATAAATA------------------ATA--------TTAAAAAAAAC------------AACAA------TAAGC---CATCCT-T---CAAATAAGATAATTCTCCTGCGACTGACCTTCTAAAGCTATTTTTTTTCAAAA
gi|10 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtcCC--CCCCCCCCC----CC----------CCTCA---AAAA-CC-AG-TC-C------TA-CGCCTATG-------------ACAATT----GCCTAAATAGAAA-A-TTTTC--AAAt
gi|11 : CTTTCTGCTGA---------TTTT-TTA-AA-GTT-TGCCC--CCCCCCCAC-----------------TTTC---AAAA-TC-AG-TC-CCT----TA-CGCCTCTG----
gi|12 : ---------TTTT-TCTTTA-GTGGTGCCA--CCACCCCCC----CCA---------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCT-TG----CA---Tgt
gi|14 : agcttTTTGGCCTG-TCTGTGGGTCCGTCACAAAGTTTGT-CAGCGC--CACAT-ACA-ACACCTCT--TTAA-CAGTAtt
gi|15 : ACTTTCTG-TGA----------TTT-TTTTAA-G-------C--TTCGCTCCC----CC----------CTTTC----AAA-TC-AG-TC-C------TA-C
gi|16 : GGGGAGACA-TATTGTTTTT-----------GTATGTCTGTCACAAAGTTTGT-CAGCGCA-
gi|17 : CCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-CTATACGTA-CGCCTCTG----
gi|18 : CCCCCCCC----CC----------CTTTC---AAAA-T--------C------TA-CGCCTCTG----gta
gi|19 : agtttg----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---aaatg
gi|2 : TCGTAAAAGAACTTTAATTAAAAAGATCTTT-TA--CAATCAAAGACCAATATAT----TTA-CACGAAGGAATT-ATATA-CCCTTTACATAAA-TATT-TA-TGATTGAATATTTTT-CATGCTTTTCAAACGT--G-GTTTACTA-TAATGCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTGGTCTGTAGGTCCGTCACAAAGTTTGTACAGCGCATCAT-TTACACACACCTCT----AAC-AGTACTAGGAAAAAATTGATACGCCAGAAATTGAGTAAATTGTGTTCAAATTTCCTAC-GTAATTGAAGCTGTTAATGGAATTTAATTGCA-AGATAAATAGGTCT--GAAAACATTTTCTTTAAACGTTAATC------------A-CACCA--ATTTCAGAAACA-TCAGCAGCATAGTTTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTTGTTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTAACAC---------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATTTCTTTTATA-TTATTTTTATTTTAATTAAATTTTAACAGAGAAATT-TATGAAATAAATAAATA------------------AAATAA-AAAATTAAAAAAA--CCAC--------TA----------AAGCAC-CATCCCATTCTCAAATAAGATAA-TCTACTGC-ACTGGCTCTCT-AAGC-----TTTTTCAAAAAGCTAcgt
gi|3 : cAT---CCACCGAAAT-GAAGCTGTTAATGGA------TT--ATAGA--AAT-TGTCT--GAAA-CATTTT--TTAGTT-TTAATC------------A-CA--ACAAATTCAGAAACA-TCAGCAGC-TAGTT-AGTTGCGTTT----AGACTATACA-TTTCTG-TGA---------TTTT-TTT-AA-GTG-TGCCC--CCCGCCC--------------------TTC---AAAA-TC-AG-TCGC------TAACGTCTCTG----TA---T--TACCATT--TAACATAAATAAA--CACTTTTCCAAAAATTA-T-ATA----------CTT-GAACATGCTCGATGCTA-TCATTTTTAATT--CTTTAT--TTATTTTTA-TTTAATTAA--T---AAAGAGAAATTATAGATAATAAATAAATAAAAAAAAAAAAAAAACAAAAA-AAAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAA-TCTACTGC--CTGACTCTCT-AAGC----TTTTTTC-AAAGGTTA
gi|4 : TCGTATAAAGACTTTA--TAAAAGTATGTTT-TA--CAATCAAAA--CAATACAT----TTA-CACGAGGA--TT-AT-TA-CC-TTTACACAAAATATT-TAATGATTGA-T-TTATT-CATGCTTT-CAAACTT--G-GTTTATAACT---GCCCCT-CCaac
gi|5 : gtgcgcgtttttcgtcagtgccgcggcactgactaaaatttgttgtgagtataaactttgccaatgcgcatccgcgtagatggatcctgggtaaaataattctatatataaaagtcgcgtccatcaaggtaacaccggggttacacgtgtttacagaaaatccataacgcggtgcgtgtcttaattgatgtgtaacggcttgcgcgtacagctatgtggagacttccacatagattataatcgggtacaatctttttagcattagttattttaaggtgtctgtatgcaagtattAGATGTTT-TA--CAATCAAAGACCAATACATAAATTTA-CACGAGGAAATT-ATATAGCC-TTTACAC-AAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACGT--G-GTTTA-TA-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAAGTTTGT-CAGCGCA-CA--T-ACACACACATGTCATTGACCA
gi|6 : TCTG-TGA---------TTTA-TTTTTA-GTT-TGCCC--CTCC----------------------TTTC---AAAA-TC-AG-CC-C------TA-CGCCTCTG----TAAAGTACTATCGTTA-TAACACA
gi|7 : TT-TTTGAA-GT--TGCCCGCCCCCCCCCC----CC----------CTTTC---AAAA-TCGGG-TC-C------TA-CAGCTCAG----TG----A-TACTACT--cacgcgcact
gi|8 : ttaCTTTCTG-TGA---------TTTT-TTT--A-ATG-TGCCC--CCCCCCCCC----CCCCCCCCCCCACTTTC----AAA-TC-AGTTC-C------TA-CGCATCTG----acaaat
gi|9 : CCCCCCC----CC----------CTTTC---AAAAGTC-AG-TC-C------TA-CGCCTCTGACGTTA---TA-TAAGAATGGTAGCGTAGACAAGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAGTGTTCAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 111 1 11 2222 1 1 1 1 1 1 1 1 11 1 33333 1 3333 2222 11 222222 1 11 1 222 1 1 33333 11 1 111 1 11 222 77777777777777 1 1 1 1 22 2222 222222222 1 1111111111 111111 111111 222 11 1 7777777777 1 1 111 11 22 1 222 22 555555555555555555555555555555555555555555555555 111 1 1 22 1 33333
lowQualScore : 333 1 0 33 3 3 1111 0 3 0 3 0 0 3 3 0 3 0 3 0 0 1 33 0 7 00000 0 8 99999999 8 88 0000 2 8 6666 55 7 1 88 1 888888 5 88 5 333 3 3 7 6 9999 00000 88 3 999 3 44 666 22222222222222 2 6 3 3 3 55 8888 7 5 000000000 4 0 4 88 55 6666 5555555555 555 2 2 2 2 222222 2 6666 555555 000 0 2 2 33 6 3 1111111111 7 3 3 666 88 00 3 7 555 7 7 7 00 777777777777777777777777777777777777777777777777 999 3 7 3 00 3 55555 7
lowQualScore : ... . . .. . . .... . . . . . . . . . . . . . . . .. . . ..... . . ........ . .. .... . . .... .. . . .. . ...... . .. . ... . . . . .... ..... .. . ... . .. ... .............. . . . . . .. .... . . ......... . . . .. .. .... .......... ... . . . . ...... . .... ...... ... . . . .. . . .......... . . . ... .. .. . . ... . . . .. ................................................ ... . . . .. . ..... .
lowQualScore : 777 0 0 88 2 2 2222 0 2 0 2 0 0 2 2 0 2 0 2 0 0 0 88 0 0 88888 0 2 66666666 0 88 0000 5 8 2222 00 3 0 00 0 555555 5 55 0 333 3 3 3 7 0000 00000 33 3 000 3 00 333 77777777777777 0 7 3 3 3 33 3333 3 7 000000000 4 0 4 33 55 5555 4444444444 000 9 9 9 9 111111 9 5555 000000 999 8 5 5 88 7 3 7777777777 3 3 3 000 33 77 3 3 777 3 3 3 77 333333333333333333333333333333333333333333333333 000 3 3 3 77 3 77777 3
consensus : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNC-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATATAATAAATAAATAAAA-AAAAAATTAAA-------------------AAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
Reference ( family-446 ) : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNC-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATATAATAAATAAATAAAA-AAAAAATTAAA-------------------AAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
gi|1 : CGTAAAAAGACCTTTAT---AAAGATCTTTCTAACCAATCAAAGACCC-TATAT----TTAGCAGGAGGAAATTCATATA-CC-TTTACACAAAATATTCTAATGATTGA-TATTTTTTCATGCTTT-CAAACTTCTGCGTTTATTA-T---GCCCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAATTTTGT-CAGCGCA-CA--T-ACACACAC-TCT--T-AACCAGT-TAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCAC-GTAAT-GAAGC-GTTAATG-AATTCAAT---A-AGA--AAT-TGTCCCTGAAA-CATTT-CTTTAGG--TTAATCCACATCTCTCTCATCATCACAATTCTAGAAACAATCAGCAGC-TAGTT-AG--GCGTTTCTTCAGAC-ATACACTTTCT--TGAATCTTATTTTTTT-TTTTAACGTG--GCTC--CCCCCTCCCTTCTCC----------TTCTCTAAAAAA-TC-AG-TC-C------TA-CGCCTCT-----TA---TA-TTACATT---AACATAAATCAAAACACTTTTC--AAAATTACT-ACAGCCTTGAAAACTTTGAAC-TGCTCGAATCTAATCATT-C-AATT--CTTTATAGTTATTTATA-TTTA-TTA---TTTAAAGGAGAA-TTATATATAATAAATAAATAATA-------TTAAA-------------------AAAAAC------------AACAA------TAAGC---CATCCT-T---CAAATAAGATAATTCTCCTGCGACTGACCTTCTAAAGCTATTTTTTTTCAAAA
gi|10 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtcCC--CCCCCCCCC----CC----------CCTCA---AAAA-CC-AG-TC-C------TA-CGCCTATG-------------ACAATT----GCCTAAATAGAAA-A-TTTTC--AAAt
gi|11 : CTTTCTGCTGA---------TTTT-TTA-AA-GTT-TGCCC--CCCCCCCAC-----------------TTTC---AAAA-TC-AG-TC-CCT----TA-CGCCTCTG----
gi|12 : ---------TTTT-TCTTTA-GTGGTGCCA--CCACCCCCC----CCA---------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCT-TG----CA---Tgt
gi|14 : agcttTTTGGCCTG-TCTGTGGGTCCGTCACAAAGTTTGT-CAGCGC--CACAT-ACA-ACACCTCT--TTAA-CAGTAtt
gi|15 : ACTTTCTG-TGA----------TTT-TTTTAA-G-------C--TTCGCTCCC----CC----------CTTTC----AAA-TC-AG-TC-C------TA-C
gi|16 : GGGGAGACA-TATTGTTTTT-----------GTATGTCTGTCACAAAGTTTGT-CAGCGCA-
gi|17 : CCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-CTATACGTA-CGCCTCTG----
gi|18 : CCCCCCCC----CC----------CTTTC---AAAA-T--------C------TA-CGCCTCTG----gta
gi|19 : agtttg----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---aaatg
gi|2 : TCGTAAAAGAACTTTAATTAAAAAGATCTTT-TA--CAATCAAAGACCAATATAT----TTA-CACGAAGGAATT-ATATA-CCCTTTACATAAA-TATT-TA-TGATTGAATATTTTT-CATGCTTTTCAAACGT--G-GTTTACTA-TAATGCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTGGTCTGTAGGTCCGTCACAAAGTTTGTACAGCGCATCAT-TTACACACACCTCT----AAC-AGTACTAGGAAAAAATTGATACGCCAGAAATTGAGTAAATTGTGTTCAAATTTCCTAC-GTAATTGAAGCTGTTAATGGAATTTAATTGCA-AGATAAATAGGTCT--GAAAACATTTTCTTTAAACGTTAATC------------A-CACCA--ATTTCAGAAACA-TCAGCAGCATAGTTTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTTGTTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTAACAC---------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATTTCTTTTATA-TTATTTTTATTTTAATTAAATTTTAACAGAGAAATT-TATGAAATAAATAAATAAAATAAAAAATTAAA-------------------AAAA--CCAC--------TA----------AAGCAC-CATCCCATTCTCAAATAAGATAA-TCTACTGC-ACTGGCTCTCT-AAGC-----TTTTTCAAAAAGCTAcgt
gi|3 : cAT---CCACCGAAAT-GAAGCTGTTAATGGA------TT--ATAGA--AAT-TGTCT--GAAA-CATTTT--TTAGTT-TTAATC------------A-CA--ACAAATTCAGAAACA-TCAGCAGC-TAGTT-AGTTGCGTTT----AGACTATACA-TTTCTG-TGA---------TTTT-TTT-AA-GTG-TGCCC--CCCGCCC--------------------TTC---AAAA-TC-AG-TCGC------TAACGTCTCTG----TA---T--TACCATT--TAACATAAATAAA--CACTTTTCCAAAAATTA-T-ATA----------CTT-GAACATGCTCGATGCTA-TCATTTTTAATT--CTTTAT--TTATTTTTA-TTTAATTAA--T---AAAGAGAAATTATAGATAATAAATAAATAAAA-AAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAA-TCTACTGC--CTGACTCTCT-AAGC----TTTTTTC-AAAGGTTA
gi|4 : TCGTATAAAGACTTTA--TAAAAGTATGTTT-TA--CAATCAAAA--CAATACAT----TTA-CACGAGGA--TT-AT-TA-CC-TTTACACAAAATATT-TAATGATTGA-T-TTATT-CATGCTTT-CAAACTT--G-GTTTATAACT---GCCCCT-CCaac
gi|5 : gtgcgcgtttttcgtcagtgccgcggcactgactaaaatttgttgtgagtataaactttgccaatgcgcatccgcgtagatggatcctgggtaaaataattctatatataaaagtcgcgtccatcaaggtaacaccggggttacacgtgtttacagaaaatccataacgcggtgcgtgtcttaattgatgtgtaacggcttgcgcgtacagctatgtggagacttccacatagattataatcgggtacaatctttttagcattagttattttaaggtgtctgtatgcaagtattAGATGTTT-TA--CAATCAAAGACCAATACATAAATTTA-CACGAGGAAATT-ATATAGCC-TTTACAC-AAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACGT--G-GTTTA-TA-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAAGTTTGT-CAGCGCA-CA--T-ACACACACATGTCATTGACCA
gi|6 : TCTG-TGA---------TTTA-TTTTTA-GTT-TGCCC--CTCC----------------------TTTC---AAAA-TC-AG-CC-C------TA-CGCCTCTG----TAAAGTACTATCGTTA-TAACACA
gi|7 : TT-TTTGAA-GT--TGCCCGCCCCCCCCCC----CC----------CTTTC---AAAA-TCGGG-TC-C------TA-CAGCTCAG----TG----A-TACTACT--cacgcgcact
gi|8 : ttaCTTTCTG-TGA---------TTTT-TTT--A-ATG-TGCCC--CCCCCCCCC----CCCCCCCCCCCACTTTC----AAA-TC-AGTTC-C------TA-CGCATCTG----acaaat
gi|9 : CCCCCCC----CC----------CTTTC---AAAAGTC-AG-TC-C------TA-CGCCTCTGACGTTA---TA-TAAGAATGGTAGCGTAGACAAGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAGTGTTCAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 111 1 11 2222 1 1 1 1 1 1 1 1 11 1 33333 1 3333 2222 11 222222 1 11 1 222 1 1 33333 11 1 111 1 11 222 77777777777777 1 1 1 1 22 2222 222222222 1 1111111111 111111 111111 222 11 1 7777777777 1 1 111 11 22 1 222 22 555555555555555555555555555555555555555555555555 111 1 1 22 1 33333
lowQualScore : 333 1 0 33 3 3 1111 0 3 0 3 0 0 3 3 0 3 0 3 0 0 1 33 0 7 00000 0 8 99999999 8 88 0000 2 8 6666 55 7 1 88 1 888888 5 88 5 333 3 3 7 6 9999 00000 88 3 999 3 44 666 22222222222222 2 6 3 3 3 55 8888 7 5 000000000 4 0 4 88 55 6666 5555555555 555 2 2 2 2 222222 2 6666 555555 000 0 2 2 33 6 3 1111111111 7 3 3 666 88 00 3 7 555 7 7 7 00 777777777777777777777777777777777777777777777777 999 3 7 3 00 3 55555 7
lowQualScore : ... . . .. . . .... . . . . . . . . . . . . . . . .. . . ..... . . ........ . .. .... . . .... .. . . .. . ...... . .. . ... . . . . .... ..... .. . ... . .. ... .............. . . . . . .. .... . . ......... . . . .. .. .... .......... ... . . . . ...... . .... ...... ... . . . .. . . .......... . . . ... .. .. . . ... . . . .. ................................................ ... . . . .. . ..... .
lowQualScore : 777 0 0 88 2 2 2222 0 2 0 2 0 0 2 2 0 2 0 2 0 0 0 88 0 0 88888 0 2 66666666 0 88 0000 5 8 2222 00 3 0 00 0 555555 5 55 0 333 3 3 3 7 0000 00000 33 3 000 3 00 333 77777777777777 0 7 3 3 3 33 3333 3 7 000000000 4 0 4 33 55 5555 4444444444 000 9 9 9 9 111111 9 5555 000000 999 8 5 5 88 7 3 7777777777 3 3 3 000 33 77 3 3 777 3 3 3 77 333333333333333333333333333333333333333333333333 000 3 3 3 77 3 77777 3
consensus : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNC-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATATAATAAATAAATAAAA-AAAAAATTAAA-------------------AAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
Reference ( family-446 ) : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNC-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATATAATAAATAAATAAAA-AAAAAATTAAA-------------------AAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
gi|1 : CGTAAAAAGACCTTTAT---AAAGATCTTTCTAACCAATCAAAGACCC-TATAT----TTAGCAGGAGGAAATTCATATA-CC-TTTACACAAAATATTCTAATGATTGA-TATTTTTTCATGCTTT-CAAACTTCTGCGTTTATTA-T---GCCCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAATTTTGT-CAGCGCA-CA--T-ACACACAC-TCT--T-AACCAGT-TAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCAC-GTAAT-GAAGC-GTTAATG-AATTCAAT---A-AGA--AAT-TGTCCCTGAAA-CATTT-CTTTAGG--TTAATCCACATCTCTCTCATCATCACAATTCTAGAAACAATCAGCAGC-TAGTT-AG--GCGTTTCTTCAGAC-ATACACTTTCT--TGAATCTTATTTTTTT-TTTTAACGTG--GCTC--CCCCCTCCCTTCTCC----------TTCTCTAAAAAA-TC-AG-TC-C------TA-CGCCTCT-----TA---TA-TTACATT---AACATAAATCAAAACACTTTTC--AAAATTACT-ACAGCCTTGAAAACTTTGAAC-TGCTCGAATCTAATCATT-C-AATT--CTTTATAGTTATTTATA-TTTA-TTA---TTTAAAGGAGAA-TTATATATAATAAATAAATAATA-------TTAAA-------------------AAAAAC------------AACAA------TAAGC---CATCCT-T---CAAATAAGATAATTCTCCTGCGACTGACCTTCTAAAGCTATTTTTTTTCAAAA
gi|10 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtcCC--CCCCCCCCC----CC----------CCTCA---AAAA-CC-AG-TC-C------TA-CGCCTATG-------------ACAATT----GCCTAAATAGAAA-A-TTTTC--AAAt
gi|11 : CTTTCTGCTGA---------TTTT-TTA-AA-GTT-TGCCC--CCCCCCCAC-----------------TTTC---AAAA-TC-AG-TC-CCT----TA-CGCCTCTG----
gi|12 : ---------TTTT-TCTTTA-GTGGTGCCA--CCACCCCCC----CCA---------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCT-TG----CA---Tgt
gi|14 : agcttTTTGGCCTG-TCTGTGGGTCCGTCACAAAGTTTGT-CAGCGC--CACAT-ACA-ACACCTCT--TTAA-CAGTAtt
gi|15 : ACTTTCTG-TGA----------TTT-TTTTAA-G-------C--TTCGCTCCC----CC----------CTTTC----AAA-TC-AG-TC-C------TA-C
gi|16 : GGGGAGACA-TATTGTTTTT-----------GTATGTCTGTCACAAAGTTTGT-CAGCGCA-
gi|17 : CCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-CTATACGTA-CGCCTCTG----
gi|18 : CCCCCCCC----CC----------CTTTC---AAAA-T--------C------TA-CGCCTCTG----gta
gi|19 : agtttg----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---aaatg
gi|2 : TCGTAAAAGAACTTTAATTAAAAAGATCTTT-TA--CAATCAAAGACCAATATAT----TTA-CACGAAGGAATT-ATATA-CCCTTTACATAAA-TATT-TA-TGATTGAATATTTTT-CATGCTTTTCAAACGT--G-GTTTACTA-TAATGCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTGGTCTGTAGGTCCGTCACAAAGTTTGTACAGCGCATCAT-TTACACACACCTCT----AAC-AGTACTAGGAAAAAATTGATACGCCAGAAATTGAGTAAATTGTGTTCAAATTTCCTAC-GTAATTGAAGCTGTTAATGGAATTTAATTGCA-AGATAAATAGGTCT--GAAAACATTTTCTTTAAACGTTAATC------------A-CACCA--ATTTCAGAAACA-TCAGCAGCATAGTTTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTTGTTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACTAACAC---------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATTTCTTTTATA-TTATTTTTATTTTAATTAAATTTTAACAGAGAAATT-TATGAAATAAATAAATAAAATAAAAAATTAAA-------------------AAAA--CCAC--------TA----------AAGCAC-CATCCCATTCTCAAATAAGATAA-TCTACTGC-ACTGGCTCTCT-AAGC-----TTTTTCAAAAAGCTAcgt
gi|3 : cAT---CCACCGAAAT-GAAGCTGTTAATGGA------TT--ATAGA--AAT-TGTCT--GAAA-CATTTT--TTAGTT-TTAATC------------A-CA--ACAAATTCAGAAACA-TCAGCAGC-TAGTT-AGTTGCGTTT----AGACTATACA-TTTCTG-TGA---------TTTT-TTT-AA-GTG-TGCCC--CCCGCCC--------------------TTC---AAAA-TC-AG-TCGC------TAACGTCTCTG----TA---T--TACCATT--TAACATAAATAAA--CACTTTTCCAAAAATTA-T-ATA----------CTT-GAACATGCTCGATGCTA-TCATTTTTAATT--CTTTAT--TTATTTTTA-TTTAATTAA--T---AAAGAGAAATTATAGATAATAAATAAATAAAA-AAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAA-TCTACTGC--CTGACTCTCT-AAGC----TTTTTTC-AAAGGTTA
gi|4 : TCGTATAAAGACTTTA--TAAAAGTATGTTT-TA--CAATCAAAA--CAATACAT----TTA-CACGAGGA--TT-AT-TA-CC-TTTACACAAAATATT-TAATGATTGA-T-TTATT-CATGCTTT-CAAACTT--G-GTTTATAACT---GCCCCT-CCaac
gi|5 : gtgcgcgtttttcgtcagtgccgcggcactgactaaaatttgttgtgagtataaactttgccaatgcgcatccgcgtagatggatcctgggtaaaataattctatatataaaagtcgcgtccatcaaggtaacaccggggttacacgtgtttacagaaaatccataacgcggtgcgtgtcttaattgatgtgtaacggcttgcgcgtacagctatgtggagacttccacatagattataatcgggtacaatctttttagcattagttattttaaggtgtctgtatgcaagtattAGATGTTT-TA--CAATCAAAGACCAATACATAAATTTA-CACGAGGAAATT-ATATAGCC-TTTACAC-AAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACGT--G-GTTTA-TA-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNACAAAGTTTGT-CAGCGCA-CA--T-ACACACACATGTCATTGACCA
gi|6 : TCTG-TGA---------TTTA-TTTTTA-GTT-TGCCC--CTCC----------------------TTTC---AAAA-TC-AG-CC-C------TA-CGCCTCTG----TAAAGTACTATCGTTA-TAACACA
gi|7 : TT-TTTGAA-GT--TGCCCGCCCCCCCCCC----CC----------CTTTC---AAAA-TCGGG-TC-C------TA-CAGCTCAG----TG----A-TACTACT--cacgcgcact
gi|8 : ttaCTTTCTG-TGA---------TTTT-TTT--A-ATG-TGCCC--CCCCCCCCC----CCCCCCCCCCCACTTTC----AAA-TC-AGTTC-C------TA-CGCATCTG----acaaat
gi|9 : CCCCCCC----CC----------CTTTC---AAAAGTC-AG-TC-C------TA-CGCCTCTGACGTTA---TA-TAAGAATGGTAGCGTAGACAAGAA
blockSeqs : ATT C . . A A AAAT . A . A G C A A . A A A . T G . . C TAAT . A TGGCCTGG A AT CAT C C CATT CC A T GA A GCCAGA T AA G TTC C T T G ATTT TGCA TA A T A TC ACG A C C . A T TT . T C . G T . GG GC . CCCCCCCCCA . G G T G TATACG A ACGT AAGTAC GGT C C CA C A C T A . TTT TC A T A AAT T A A TA ACAAAAAAAAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAAC ACG A T . A . T A
blockSeqs : T G . . A A . . A . A . . A A . A . A . . T . . T CT . N TGGCCTG . A TTT C C TT C A . . . T G . TAT . . T . T TT A . . . . . C . T . . . T . T . . A . . . . . CT . . TA AT C C . . . . . . . TC . . . A A . A . A AAAACCACTA AC . T . . . . .
blockSeqs : G . . . A . . . . . . . . . . . . . . . G . . . . . . NNNNNNN . A T . A . C . . . T . G . . . . . . . . . . . TA T . . .
blockSeqs : . . . . . . T . G . . . . . . . . . . . T T
blockSeqs : . . . G . T . . . . . . . . . . . A .
blockSeqs : . . . . . G . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ********* **** *** TA**** GT*
originalCons : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNC-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-TACCATT--TAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATATAATAAATAAATAAAA-AAAAAATTAAA-------------------AAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
finalCons : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CC-TTTACACAAAATATT-TAATGATTGA-TATTTTT-CATGCTTT-CAAACNT--G-GTTTATTA-T---GCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTG-TCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CAC-T-ACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAAT-GAAGCTGTTAATGGAATTCAATT--A-AGA--AAT-TGTCC--GAAA-CATTTTCTTTAGNC-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAGTT-AGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TATA----TACCATTGT-AACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATATAATAAATAAATAAAA-AAAAAATTAAA-------------------AAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAGTGTTCAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 111 1 11 2222 1 1 2 1 1 1 1 1 11 1 22222222 1 1111111 333 11111111 11 222222 1 11 1 222 1 1 33333 11 1 22222 11 222 888888888888888888 1 1 1 22 2222 222222222 1 1111111111 111111 11111111 11 11 1 7777777777 1 1 111 11 22 1 222 22 555555555555555555555555555555555555555555555555 111 1 1 22 1 33333
lowQualScore : 333 1 0 33 3 3 1111 0 3 0 3 0 5 0 3 0 3 0 0 1 33 0 66666666 0 8 0000000 8 88 999 2 8 88888888 7 1 88 1 888888 5 88 5 333 3 3 7 6 9999 00000 88 3 22222 44 666 000000000000000000 3 3 3 55 8888 7 5 000000000 4 0 4 88 55 6666 5555555555 555 2 2 2 2 222222 2 6666 55555555 99 0 2 2 33 6 3 1111111111 7 3 3 666 88 00 3 7 555 7 7 7 00 777777777777777777777777777777777777777777777777 999 3 7 3 00 3 55555 7
lowQualScore : ... . . .. . . .... . . . . . . . . . . . . . .. . ........ . . ....... . .. ... . . ........ . . .. . ...... . .. . ... . . . . .... ..... .. . ..... .. ... .................. . . . .. .... . . ......... . . . .. .. .... .......... ... . . . . ...... . .... ........ .. . . . .. . . .......... . . . ... .. .. . . ... . . . .. ................................................ ... . . . .. . ..... .
lowQualScore : 777 0 0 88 2 2 2222 0 2 0 2 0 5 0 2 0 2 0 0 0 88 0 22222222 0 2 2222222 0 88 000 5 8 00000000 3 0 00 0 555555 5 55 0 333 3 3 3 7 0000 00000 33 3 33333 00 333 777777777777777777 3 3 3 33 3333 3 7 000000000 4 0 4 33 55 5555 4444444444 000 9 9 9 9 111111 9 5555 22222222 66 8 5 5 88 7 3 7777777777 3 3 3 000 33 77 3 3 777 3 3 3 77 333333333333333333333333333333333333333333333333 000 3 3 3 77 3 77777 3
consensus : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CCTTTACACAAAATATT-TAATGATTG-ATATTTTT-CATGC-TTTCAAACNT--G-GTTTATT---A-TGCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCT-GTCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CA-C-TACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAA-TGAAGCTGTTAATGGAATTCAATT--A-AG--AAAT-TGTCC--G-AAACATTTTCTTTAGNC-TTAATC------------A-CAC-ACAATTTCAGAAACA-TCAGCAGC-TAG-TTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-T-ACCATTGTAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATATAATAAATAAATAAAA-AAAAAATTAAA-------------------AAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
Reference ( family-446 ) : NTCGTAAAAAGACTTTAATTAAAAAGATNTTT-TA--CAATCAAAGACCAATACAT----TTA-CACGAGGAAATT-ATATA-CCTTTACACAAAATATT-TAATGATTG-ATATTTTT-CATGC-TTTCAAACNT--G-GTTTATT---A-TGCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCT-GTCTGTAGGTCCGTCACAAAGTTTGT-CAGCGCA-CA-C-TACACACACCTCT--TTAACCAGTACNGGGAAAAAGTTGATNCGCCAGAAATTGAGTAAATTGTGTTCAAAT---CCAC-GTAA-TGAAGCTGTTAATGGAATTCAATT--A-AG--AAAT-TGTCC--G-AAACATTTTCTTTAGNC-TTAATC------------A-CACCACAATTTCAGAAACA-TCAGCAGC-TAG-TTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTT-TTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-T-ACCATTGTAACATAAATAAAAACACTTTTC--AAAATTACT-ACA----------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATT--CTTTATA-TTATTTTTA-TTTAATTAA--TTTAAAAGAGAAATTATATATAATAAATAAATAAAA-AAAAAATTAAA-------------------AAAAACCCAC--------AACAA------TAAGCAC-CATCCC-TTCTCAAATAAGATAA-TCTACTGC-ACTGACTCTCT-AAGC----TTTTTTCAAAAGGCTA
gi|1 : CGTAAAAAGACCTTTAT---AAAGATCTTTCTAACCAATCAAAGACCC-TATAT----TTAGCAGGAGGAAATTCATATA-CCTTTACACAAAATATTCTAATGATTG-ATATTTTTTCATGC-TTTCAAACTTCTGCGTTTATT---A-TGCCCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNACAAATTTTGT-CAGCGCA-CA---TACACACAC-TCT--T-AACCAGT-TAGGGAAAAAGTT--TTC------AAT-GAGTA--TTGT-TTCAAAT---CCAC-GTAA-TGAAGC-GTTAATG-AATTCAAT---A-AG--AAAT-TGTCCCTG-AAACATTT-CTTTAGG--TTAATCCACATCTCTCTCATCATCACAATTCTAGAAACAATCAGCAGC-TAG-TTAG--GCGTTTCTTCAGAC-ATACACTTTCT--TGAATCTTATTTTTTT-TTTTAACGTG--GCTC--CCCCCTCCCTTCTCC----------TTCTCTAAAAAA-TC-AG-TC-C------TA-CGCCTCT-----TA---TA-T-TACATT--AACATAAATCAAAACACTTTTC--AAAATTACT-ACAGCCTTGAAAACTTTGAAC-TGCTCGAATCTAATCATT-C-AATT--CTTTATAGTTATTTATA-TTTA-TTA---TTTAAAGGAGAA-TTATATATAATAAATAAATAATA-------TTAAA-------------------AAAAAC------------AACAA------TAAGC---CATCCT-T---CAAATAAGATAATTCTCCTGCGACTGACCTTCTAAAGCTATTTTTTTTCAAAA
gi|10 : tgcagtgcttttatccactgcggctactgacgtattctgtatgtgagtataaccttccaaatgcgcattactctttagtagattggtgaggtctgggtaaaaaagtcttataatctatctgcgtcatcaaggtaataaccagcggtacaaaaagttgttaacaacacatctataacgcggttgcactctataattgactgtgtacgggctctggtcgtacagtctgtgttcggaggacttccacatcgattctatatatcgcgtgacatctgtcttagcaatattagttctcacaagggtcgtatcaaagctatttggtcCC--CCCCCCCCC----CC----------CCTCA---AAAA-CC-AG-TC-C------TA-CGCCTATG--------------ACAATTG---CCTAAATAGAAA-A-TTTTC--AAAt
gi|11 : CTTTCTGCTGA---------TTTT-TTA-AA-GTT-TGCCC--CCCCCCCAC-----------------TTTC---AAAA-TC-AG-TC-CCT----TA-CGCCTCTG----
gi|12 : ---------TTTT-TCTTTA-GTGGTGCCA--CCACCCCCC----CCA---------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCT-TG----CA---Tgt
gi|14 : agcttTTTGGCCT-GTCTGTGGGTCCGTCACAAAGTTTGT-CAGCGC--CA-CATACA-ACACCTCT--TTAA-CAGTAtt
gi|15 : ACTTTCTG-TGA----------TTT-TTTTAA-G-------C--TTCGCTCCC----CC----------CTTTC----AAA-TC-AG-TC-C------TA-C
gi|16 : GGGGAGACA-TATTGTTTTT-----------GTATGTCTGTCACAAAGTTTGT-CAGCGCA-
gi|17 : CCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-CTATACGTA-CGCCTCTG----
gi|18 : CCCCCCCC----CC----------CTTTC---AAAA-T--------C------TA-CGCCTCTG----gta
gi|19 : agtttg----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---aaatg
gi|2 : TCGTAAAAGAACTTTAATTAAAAAGATCTTT-TA--CAATCAAAGACCAATATAT----TTA-CACGAAGGAATT-ATATACCCTTTACAT-AAATATT-T-ATGATTGAATATTTTT-CATGCTTTTCAAACGT--G-GTTTACTATAA-TGCCCCT-CCCCTTCCACCTTTACGTGGGGAGACAATACTGTTTTTTGGCCTGGTCTGTAGGTCCGTCACAAAGTTTGTACAGCGCATCATT-TACACACACCTC----TAA-CAGTACTAGGAAAAAATTGATACGCCAGAAATTGAGTAAATTGTGTTCAAATTTCCTAC-GTAATTGAAGCTGTTAATGGAATTTAATTGCA-AGATAAATAGGTCT--GAAAACATTTTCTTTAAACGTTAATC------------A-CAC--CAATTTCAGAAACA-TCAGCAGCATAGTTTAGC-GCGTTT----AGACTATACACTTTCTG-TGA---------TTTTGTTTTAA-GTG-TGCCC--CCCCCCCCC----CC----------CTTTC---AAAA-TC-AG-TC-C------TA-CGCCTCTG----TA---TA-T-ACCATT-TAACATAAATAAAAACACTTTTC--AAAATTACTAACAC---------CTTTGAAC-TGCTCGATGCTA-TCATTTC-AATTTCTTTTATA-TTATTTTTATTTTAATTAAATTTTAACAGAGAAATT-TATGAAATAAATAAATAAAATAAAAAATTAAA-------------------AAAA--CCAC--------TA----------AAGCAC-CATCCCATTCTCAAATAAGATAA-TCTACTGC-ACTGGCTCTCT-AAGC-----TTTTTCAAAAAGCTAcgt
gi|3 : cAT---CCACCGAAA-TGAAGCTGTTAATGGA------TT--ATAG--AAAT-TGTCT--G-AAACATTTT--TTAGTT-TTAATC------------A-CA--ACAAATTCAGAAACA-TCAGCAGC-TAG-TTAGTTGCGTTT----AGACTATACA-TTTCTG-TGA---------TTTT-TTT-AA-GTG-TGCCC--CCCGCCC--------------------TTC---AAAA-TC-AG-TCGC------TAACGTCTCTG----TA---T--T-ACCATT-TAACATAAATAAA--CACTTTTCCAAAAATTA-T-ATA----------CTT-GAACATGCTCGATGCTA-TCATTTTTAATT--CTTTAT--TTATTTTTA-TTTAATTAA--T---AAAGAGAAATTATAGATAATAAATAAATAAAA-AAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCACGAAAAAAAAACAAACAAACTAAGCACGCATCCC-TTCTCAAATAAGATAA-TCTACTGC--CTGACTCTCT-AAGC----TTTTTTC-AAAGGTTA
gi|4 : TCGTATAAAGACTTTA--TAAAAGTATGTTT-TA--CAATCAAAA--CAATACAT----TTA-CACGAGGA--TT-AT-TA-CCTTTACACAAAATATT-TAATGATTG-AT-TTATT-CATGC-TTTCAAACTT--G-GTTTATA---ACTGCCCCT-CCaac
gi|5 : gtgcgcgtttttcgtcagtgccgcggcactgactaaaatttgttgtgagtataaactttgccaatgcgcatccgcgtagatggatcctgggtaaaataattctatatataaaagtcgcgtccatcaaggtaacaccggggttacacgtgtttacagaaaatccataacgcggtgcgtgtcttaattgatgtgtaacggcttgcgcgtacagctatgtggagacttccacatagattataatcgggtacaatctttttagcattagttattttaaggtgtctgtatgcaagtattAGATGTTT-TA--CAATCAAAGACCAATACATAAATTTA-CACGAGGAAATT-ATATAGCCTTTACAC-AAATATT-TAATGATTG-ATATTTTT-CATGC-TTTCAAACGT--G-GTTTA-T---A----NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNACAAAGTTTGT-CAGCGCA-CA---TACACACACATGTCATTGACCA
gi|6 : TCTG-TGA---------TTTA-TTTTTA-GTT-TGCCC--CTCC----------------------TTTC---AAAA-TC-AG-CC-C------TA-CGCCTCTG----TAAAGTACT-ATCGTTATAACACA
gi|7 : TT-TTTGAA-GT--TGCCCGCCCCCCCCCC----CC----------CTTTC---AAAA-TCGGG-TC-C------TA-CAGCTCAG----TG----A-T-ACTACTACAAcacgcgcact
gi|8 : ttaCTTTCTG-TGA---------TTTT-TTT--A-ATG-TGCCC--CCCCCCCCC----CCCCCCCCCCCACTTTC----AAA-TC-AGTTC-C------TA-CGCATCTG----at
gi|9 : CCCCCCC----CC----------CTTTC---AAAAGTC-AG-TC-C------TA-CGCCTCTGACGTTA---TA-TAAGAATGGTAGCGTAGACAAGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAGTGTTCAAATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN