lowQualScore : 44 1111 1111 11 11 33333333333333 1 11 222 1 33 1111 111 1111 1 111111 33
lowQualScore : 33 6 3333 4444 5555 55 4 11 6 8 0 8 8 66666666666666 0 0 0 9 22 999 8 2 0 00 55 1 0000 000 66 6666 4 7 55 4 2 4 3 1 3 444444 4 555 5 3 44 5 4 3 00 6
lowQualScore : .. . .... .... .... .. . .. . . . . . .............. . . . . .. ... . . . .. .. . .... ... .. .... . . .. . . . . . . ...... . ... . . .. . . . .. .
lowQualScore : 00 0 0000 7777 2222 00 8 00 0 0 8 0 0 77777777777777 8 0 8 8 00 555 0 2 0 00 88 0 0000 444 99 2222 0 9 55 0 0 0 3 8 3 222222 7 888 1 3 44 7 7 7 55 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGGGTAA-ATGCTGTCTGACGCGTTTCANAGNAAT--TATTAG-GCCGTTCTTTATAC--ACTGA-TTTTGACTAC-G-GATNCCTCGGTTTA--CCTGATCAAGACAATGGACTCACGGCGGGTGTGATCGGTC-AACAGGGGA-GCT-TACTCCTCCTA-GGCACCTGATTCCACNTCTGGTGT-GT--CCAGGGG-T--CCG-TGTTTGCC--C-AACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG------ATC---ACTGTTCGTTATCTTTGCCTTT-TCAT-TNANCTGT-CACTG
Reference ( gi|1 ) : TAATTCGACATACTCGATATATCTACGATGACTAACGATTTAGTTTGCCAGTATGGTCTGCCATTGGGTAACATGCTGTCTAACAAGTTTCAGAGCAAT--TGTTAA-GCCGTTTTTTATAC--ACTGA-TTTTGACTAC-G-AATAACTTGGTTTA--CCTGATCAAGACAATGGGCTCACAGCGGGTGTGACCGGTC-GACAGGGAATGCT-TACTCCTCTTA-GATACCTGATTCCACATTTGGTGT-AT--CCAGGGG-G--CCG-TGTTTACC--C-AACTCTTG-TTTT-GTATTCTGTTTGGGACTTACGAGATTG------ACC---ACTGTTTGTTATCTTTACCTTT-TCAT-TAAGCTGTCCATTGTA
gi|2 : CATTGGGTAA--TGCAGTCTGATGTGTTTTATAGCAATGTTATTAAAGCCGTTTTCCATAC--ATTGA-TGT--GCTAT-GGAATGCTTCGGT--A--CCTGGTCAAGACAACGGGTTCACAGCGGATGTGACCGGTC-AACAGGG---GCTGTATTCCTCCTA-G-CACCTGA-TCCATTTCTGGTG---T--CCA-GGA-G--CCGTTGTTTGTC--C-AGCTCTTGATTTT-GTATTCTATTTGGACCTCACGAGATTT------ATC---ACTATTCGTTA-CTTTGCCTTT-
gi|2 : aattcatagtcaaaatatgtgaatgaacaacggcataaaatgccgttgaaatgcgtcagacagATGCTGTCTGACGCATTTCAACGGCAT--T-TTAT-GCCGTTGTTCATTC--ACATA-TTTTGACTAT-G-AATac
gi|15 : aTGTCTGAGAAAATTCAGACTAAT--TGTTAG-GCCATTCTTTCCAA--ACTAA-TTTTGACTAT-G-GATtgggtaatgcagtctgatgtgttttatagcaatgttattaaagccgttttccatacattgatgtgctatggaatgcttcggtacctggtcaagacaacgggttcacagcggatgtgaccggtcaacaggggctgtattcctcctagcacctgatccatttctggtgtccaggagccgttgtttgtccagctcttgattttgtattctatttggacctcacgagatttatcactattcgttactttgcctttac
gi|13 : T--TATTAG-ACCGTTCTGTATACACACTGATTTTTGACTACTG-GATTACTT-CTTTACCCCTGATCAAGGCGAT-AACT-AT-GAAGGTGTGACCg
gi|11 : CGTTCTTTATAC--AC-GA-TTTTGACTGC-G-GATACC--GGTTTA---CTGATCA--ATAAT-GGCTC-CGACGGGTATGATTGGTCAGACAGGGAA-GCT-TACT
gi|4 : TCAAGATAATGGACTCACGGCGGATGAGATCGGTC-AACAGAAGATGCC-TACTCCTCCTA-GGTACCTGATCCGA-----GGTGT-GT--CCAGGGG-T--TCG-TGTTTGCC--C-AACTCTTGTTTTT-GTATTCTATTAGAGATTTACGAGATTG------CTC---ACTGTTCGTTATTTTTGCCTTT-TCAT-TTAATTG--CACTG
gi|3 : AAGGCAATGAACTCATGGTGGGTGTGATCGGTC-AACAGGGGTGGAT-TACTCCCCTAA-G-CACCTGATCCCACATCTTGTGTGGT--CCAGGGATA--CC---GTTTGCC--T-ATCTCTTA-TTTT-GTAATCTGTTATGGTCTT---------------ATC---ACTGTTCGTTATCTTTGTCTTT-TCAC-Tgtgtttgtattctggtgtaaa
gi|8 : ctttccgtgtgGCT-TACCACTCCTGTGA-GCCTGAC-CCACCCCTGATGT-GT--CCAGGCA-T--CCA-TGTTTGCC--C-AACTCTTGCTTTT-GTATT-TGT----GATTT-C--AACTA------ATC---ACTGTTCGTTATCATTACCTTT-ACATATAACCTGTcattcaatatctgttgtgttatggatacaaatacaaaa
gi|6 : CCCGATTCTACCTCAGGTGG-GT--TCAGGAG-T--CCA-TGATTGCC--C-AACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG------AT-----GTGTTTGTTATCTTTGCCTTTATCAa
gi|10 : GATTCACCATTTG-TGC-ATGACTGAGAG-GTACTG-AGTTT---------CTCTTA-GATT-GTATTCC-TTTGGGACCAATGCGATTA------ATC---A--GTTTGTTATCTTTGCTTTT-TCAT-TGAGacaccaatgatactagctttcttat
gi|5 : TCTGGTGT-GT--CCAGGGG-T--CCG-TGATTGCC--C-AACTCTTG-TTTTTGTATTATATTTAGGACTTACGAGATTG------ATC---ACTGTTCGTTATATTTGCCTTT-ATAT-Ttg
gi|7 : GTGT-AT--CCAGGAA-T--CTG-TGTTGGAC--T-AATTCTTG-TTTA-GTTTTGTGTTTAGATCTTTCGAAATTG------ATC---ACTCTT--TTATCTTtataaaacatattttagcaaacaattttgacgaaagggagggatccatttcccggacccccatctggatccgccac
gi|9 : taaatacctattgaaacGGG-G--TCG-TGTTTGTC--C-AACTCTTG-TATT-GTAATCTAGTTAGAACTTACGA-ATTG------ATC---ACTTTTCATTATCTTTGCCTTT-gtttgttttaccaatggtgtatatcacaattattt
gi|12 : ca-TGTTTATCATCGAACTCTTG-ATTT-ATAATCCGTTTAGGACTTCTGAGATTGATAACTACCTATACTGTTCATTATATTCACCTTT-TAAT-atacaaccaactgtaatatccattctttata
gi|16 : TATTTAGGACTTACAAGATTG------ATC---ACTGTTCGTTATCTTTGCCTTT-ACAT-T
gi|18 : CTTACGAGATTAGA----ATC---ACTGTTTGTTATATTTGCCCTT-tatgaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AAAATATACGTTCAAACAAACCATCTTATGAAAGGGGGGAGGGTCCAATCCCCGGACCCCCTCTGGATCCGCCA
Unaligned ( gi|17 ): GACTTGTGTGATTGATCGCTGTTCGTTATATTTGTCATTTTATACATTAT
Alignments
lowQualScore : 22 11 1 1 111 2222 111111111
lowQualScore : 00 0 6 1 1 11 6 99 99 3 6 6 3 1 0 2 3 666 4 1 8 6666 6 0 8 1 22 3 4 4 4 8 4 7 7 0 0 2 33 111111111 3 4 1 1 7
lowQualScore : .. . . . . .. . .. .. . . . . . . . . ... . . . .... . . . . .. . . . . . . . . . . . .. ......... . . . . .
lowQualScore : 77 2 5 0 0 00 8 44 22 5 7 7 3 0 5 5 2 222 2 0 0 5555 7 8 2 4 44 0 4 4 0 0 0 3 3 3 1 6 99 444444444 1 4 0 0 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGGGTAA-ATGCTGTCTGACGCGTTTCAGAGCAAT--TGTTAG-GCCGTTCTTTAT--ACACTGA-TTTTGACTAC-GGA-TACTTCGGTTTA--CCTGATCAAGACAATGGACTCACGGCGGGTGTGACCGGTCA-ACAGGGG-A-GCT-TACTCCTCCTAGGCACCTGATTCCACNTCTG-GTGT-GTCC-AGGGGT-CCG-TGTTTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-TCAT-TNANCTGTCACTG
Reference ( family-416 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGGGTAA-ATGCTGTCTGACGCGTTTCANAGNAAT--TATTAG-GCCGTTCTTTAT--ACACTGA-TTTTGACTAC-GGA-TNCCTCGGTTTA--CCTGATCAAGACAATGGACTCACGGCGGGTGTGATCGGTCA-ACAGGGG-A-GCT-TACTCCTCCTAGGCACCTGATTCCACNTCTG-GTGT-GTCC-AGGGGT-CCG-TGTTTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-TCAT-TNANCTGTCACTG
gi|1 : CATTGGGTAACATGCTGTCTAACAAGTTTCAGAGCAAT--TGTTAA-GCCGTTTTTTAT--ACACTGA-TTTTGACTAC-GAA-TAACTTGGTTTA--CCTGATCAAGACAATGGGCTCACAGCGGGTGTGACCGGTCG-ACAGGGA-ATGCT-TACTCCTCTTAGATACCTGATTCCACATTTG-GTGT-ATCC-AGGGGG-CCG-TGTTTACCCAACTCTTG-TTTT-GTATTCTGTTTGGGACTTACGAGATTG--AC---------CACTGTTTGTTATCTTTACCTTT-TCAT-TAAGCTGT
gi|10 : taattcgacatactcgatatatctacgatgactaacgatttagtttgccagtatggtctgcGATTCACCATTTGTGCAT-GACTGAGAGGTACTG-AGTTT------CTCTTA-GATT-GTATTCC-TTTGGGACCAATGCGATTA--AT---------CA--GTTTGTTATCTTTGCTTTT-TCAT-TGAcattgta
gi|11 : CGTTCTTTAT--ACAC-GA-TTTTGACTGC-GGA-TAC--CGGTTTA---CTGATCA--ATAATGG-CTC-CGACGGGTATGATTGGTCAGACAGGGA-A-GCT-TACTgtg
gi|12 : AACTCTTG-ATTT-ATAATCCGTTTAGGACTTCTGAGATTG--ATAACTACCTATACTGTTCATTATATTCACCTTT-TAAT-
gi|13 : tgtttatcatcgT--TATTAG-ACCGTTCTGTATACACACTGATTTTTGACTACTGGATTACTTC--TTTACCCCTGATCAAGGCGAT-AACT-ATGA-AGGTGTGACC
gi|15 : TGTCTGAGAAAATTCAGACTAAT--TGTTAG-GCCATTCTTTCC--AAACTAA-TTTTGACTAT-GGA-T
gi|16 : TATTTAGGACTTACAAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-ACAT-TTAg
gi|17 : GACTTGTGTGATTG--AT---------CGCTGTTCGTTATATTTGTCATT-TTAT-tgaa
gi|18 : CTTACGAGATTAGAAT---------CACTGTTTGTTATATTTGCCCTT-acattat
gi|2 : A-ATGCTGTCTGACGCATTTCAACGGCAT--T-TTAT-GCCGTTGTTCAT--TCACATA-TTTTGACTAT-GAA-Tgta
gi|2 : aCATTGGGTAA--TGCAGTCTGATGTGTTTTATAGCAATGTTATTAAAGCCGTTTTCCAT--ACATTGA-TGT--GCTAT-GGAATGCTTCGGT--A--CCTGGTCAAGACAACGGGTTCACAGCGGATGTGACCGGTCA-ACAGGG----GCTGTATTCCTCCTA-GCACCTGA-TCCATTTCTG---GT-GTCC-AGGAG--CCGTTGTTTGTCCAGCTCTTGATTTT-GTATTCTATTTGGACCTCACGAGATTT--AT---------CACTATTCGTTA-CTTTGCCTTT-gggtaatgcagtctgatgtgttttatagcaatgttattaaagccgttttccatacattgatgtgctatggaatgcttcggtacctggtcaagacaacgggttcacagcggatgtgaccggtcaacaggggctgtattcctcctagcacctgatccatttctggtgtccaggagccgttgtttgtccagctcttgattttgtattctatttggacctcacgagatttatcactattcgttactttgcctttac
gi|3 : aattcatagtcaaaatatgtgaatgaacaacggcataaaatgccgttgaaatgcgtcagacagAAGGCAATGAACTCATGGTGGGTGTGATCGGTCA-ACAGGGGTG-GAT-TACTCC-CCTAAGCACCTGATCCCACATCTT-GTGTGGTCC-AGGGATACC---GTTTGCCTATCTCTTA-TTTT-GTAATCTGTTATGGTCTT-----------AT---------CACTGTTCGTTATCTTTGTCTTT-TCAC-TCAac
gi|4 : ctttccgtgtgTCAAGATAATGGACTCACGGCGGATGAGATCGGTCA-ACAGAAG-ATGCC-TACTCCTCCTAGGTACCTGATCCGA-----G-GTGT-GTCC-AGGGGT-TCG-TGTTTGCCCAACTCTTG-TTTTTGTATTCTATTAGAGATTTACGAGATTG--CT---------CACTGTTCGTTATTTTTGCCTTT-TCAT-TTAATTG-CACTGttcaatatctgttgtgttatggatacaaatacaaaa
gi|5 : TCTG-GTGT-GTCC-AGGGGT-CCG-TGATTGCCCAACTCTTG-TTTTTGTATTATATTTAGGACTTACGAGATTG--AT---------CACTGTTCGTTATATTTGCCTTT-ATAT-TTAgtgtttgtattctggtgtaaa
gi|6 : CCCGATTCTACCTCAG-GTGG-GTTC-AGGAGT-CCA-TGATTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT-----------GTGTTTGTTATCTTTGCCTTTATCAtaaaacatattttagcaaacaattttgacgaaagggagggatccatttcccggacccccatctggatccgccac
gi|7 : -GTGT-ATCC-AGGAAT-CTG-TGTTGGACTAATTCTTG-TTTA-GTTTTGTGTTTAGATCTTTCGAAATTG--AT---------CACTCTT--TTATCTTacaccaatgatactagctttcttat
gi|8 : taaatacctattgaaac-GCT-TACCACTCCTGTGAGCCTGAC-CCACCCCTG-ATGT-GTCC-AGGCAT-CCA-TGTTTGCCCAACTCTTGCTTTT-G-----TATTTGTGATTT-C--AACTA--AT---------CACTGTTCGTTATCATTACCTTT-ACATATAACCTGTgtttgttttaccaatggtgtatatcacaattattt
gi|9 : C-AGGGGT-C-G-TGTTTGTCCAACTCTTG-TATT-GTAATCTAGTTAGAACTTACGA-ATTG--AT---------CACTTTTCATTATCTTTGCCTTT-a
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAAATATACGTTCAAACAAACCATCTTATGAAAGGGGGGAGGGTCCAATCCCCGGACCCCCTCTGGATCCGCCA
Alignments
lowQualScore : 22 11 1 111 2222 111111111
lowQualScore : 00 0 6 0 0 11 6 99 99 3 6 6 3 7 2 3 666 4 1 8 6666 6 0 8 1 22 3 4 4 4 8 4 7 7 0 0 2 33 111111111 3 4 1 1 7
lowQualScore : .. . . . . .. . .. .. . . . . . . . ... . . . .... . . . . .. . . . . . . . . . . . .. ......... . . . . .
lowQualScore : 77 2 5 2 2 00 4 44 22 5 7 7 3 0 5 2 222 2 0 0 5555 7 8 2 4 44 0 4 4 0 0 0 3 3 3 1 6 99 444444444 1 4 0 0 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGGGTAA-ATGCTGTCTGACGCGTTTCAGAGCAAT--TGTTAG-GCCGTTCTTTAT--ACACTGA-TTTTGACTAC-GGA-TACTTCGGTTTA--CCTGATCAAGACAATGGACTCACGGCGGGTGTGACCGGTCA-ACAGGGG-A-GCT-TACTCCTCCTAGGCACCTGATTCCACNTCTG-GTGT-GTCC-AGGGGT-CCG-TGTTTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-TCAT-TNANCTGTCACTG
Reference ( family-416 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGGGTAA-ATGCTGTCTGACGCGTTTCAGAGCAAT--TGTTAG-GCCGTTCTTTAT--ACACTGA-TTTTGACTAC-GGA-TACTTCGGTTTA--CCTGATCAAGACAATGGACTCACGGCGGGTGTGACCGGTCA-ACAGGGG-A-GCT-TACTCCTCCTAGGCACCTGATTCCACNTCTG-GTGT-GTCC-AGGGGT-CCG-TGTTTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-TCAT-TNANCTGTCACTG
gi|1 : CATTGGGTAACATGCTGTCTAACAAGTTTCAGAGCAAT--TGTTAA-GCCGTTTTTTAT--ACACTGA-TTTTGACTAC-GAA-TAACTTGGTTTA--CCTGATCAAGACAATGGGCTCACAGCGGGTGTGACCGGTCG-ACAGGGA-ATGCT-TACTCCTCTTAGATACCTGATTCCACATTTG-GTGT-ATCC-AGGGGG-CCG-TGTTTACCCAACTCTTG-TTTT-GTATTCTGTTTGGGACTTACGAGATTG--AC---------CACTGTTTGTTATCTTTACCTTT-TCAT-TAAGCTGT
gi|10 : taattcgacatactcgatatatctacgatgactaacgatttagtttgccagtatggtctgcGATTCACCATTTGTGCAT-GACTGAGAGGTACTG-AGTTT------CTCTTA-GATT-GTATTCC-TTTGGGACCAATGCGATTA--AT---------CA--GTTTGTTATCTTTGCTTTT-TCAT-TGAcattgta
gi|11 : CGTTCTTTAT--ACAC-GA-TTTTGACTGC-GGA-TAC--CGGTTTA---CTGATCA--ATAATGG-CTC-CGACGGGTATGATTGGTCAGACAGGGA-A-GCT-TACTgtg
gi|12 : AACTCTTG-ATTT-ATAATCCGTTTAGGACTTCTGAGATTG--ATAACTACCTATACTGTTCATTATATTCACCTTT-TAAT-
gi|13 : tgtttatcatcgT--TATTAG-ACCGTTCTGTATACACACTGATTTTTGACTACTGGATTACTTC--TTTACCCCTGATCAAGGCGAT-AACT-ATGA-AGGTGTGACC
gi|15 : TGTCTGAGAAAATTCAGACTAAT--TGTTAG-GCCATTCTTTCC--AAACTAA-TTTTGACTAT-GGA-T
gi|16 : TATTTAGGACTTACAAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-ACAT-TTAg
gi|17 : GACTTGTGTGATTG--AT---------CGCTGTTCGTTATATTTGTCATT-TTAT-tgaa
gi|18 : CTTACGAGATTAGAAT---------CACTGTTTGTTATATTTGCCCTT-acattat
gi|2 : A-ATGCTGTCTGACGCATTTCAACGGCAT--T-TTAT-GCCGTTGTTCAT--TCACATA-TTTTGACTAT-GAA-Tgta
gi|2 : aCATTGGGTAA--TGCAGTCTGATGTGTTTTATAGCAATGTTATTAAAGCCGTTTTCCAT--ACATTGA-TGT--GCTAT-GGAATGCTTCGGT--A--CCTGGTCAAGACAACGGGTTCACAGCGGATGTGACCGGTCA-ACAGGG----GCTGTATTCCTCCTA-GCACCTGA-TCCATTTCTG---GT-GTCC-AGGAG--CCGTTGTTTGTCCAGCTCTTGATTTT-GTATTCTATTTGGACCTCACGAGATTT--AT---------CACTATTCGTTA-CTTTGCCTTT-gggtaatgcagtctgatgtgttttatagcaatgttattaaagccgttttccatacattgatgtgctatggaatgcttcggtacctggtcaagacaacgggttcacagcggatgtgaccggtcaacaggggctgtattcctcctagcacctgatccatttctggtgtccaggagccgttgtttgtccagctcttgattttgtattctatttggacctcacgagatttatcactattcgttactttgcctttac
gi|3 : aattcatagtcaaaatatgtgaatgaacaacggcataaaatgccgttgaaatgcgtcagacagAAGGCAATGAACTCATGGTGGGTGTGATCGGTCA-ACAGGGGTG-GAT-TACTCC-CCTAAGCACCTGATCCCACATCTT-GTGTGGTCC-AGGGATACC---GTTTGCCTATCTCTTA-TTTT-GTAATCTGTTATGGTCTT-----------AT---------CACTGTTCGTTATCTTTGTCTTT-TCAC-TCAac
gi|4 : ctttccgtgtgTCAAGATAATGGACTCACGGCGGATGAGATCGGTCA-ACAGAAG-ATGCC-TACTCCTCCTAGGTACCTGATCCGA-----G-GTGT-GTCC-AGGGGT-TCG-TGTTTGCCCAACTCTTG-TTTTTGTATTCTATTAGAGATTTACGAGATTG--CT---------CACTGTTCGTTATTTTTGCCTTT-TCAT-TTAATTG-CACTGttcaatatctgttgtgttatggatacaaatacaaaa
gi|5 : TCTG-GTGT-GTCC-AGGGGT-CCG-TGATTGCCCAACTCTTG-TTTTTGTATTATATTTAGGACTTACGAGATTG--AT---------CACTGTTCGTTATATTTGCCTTT-ATAT-TTAgtgtttgtattctggtgtaaa
gi|6 : CCCGATTCTACCTCAG-GTGG-GTTC-AGGAGT-CCA-TGATTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT-----------GTGTTTGTTATCTTTGCCTTTATCAtaaaacatattttagcaaacaattttgacgaaagggagggatccatttcccggacccccatctggatccgccac
gi|7 : -GTGT-ATCC-AGGAAT-CTG-TGTTGGACTAATTCTTG-TTTA-GTTTTGTGTTTAGATCTTTCGAAATTG--AT---------CACTCTT--TTATCTTacaccaatgatactagctttcttat
gi|8 : taaatacctattgaaac-GCT-TACCACTCCTGTGAGCCTGAC-CCACCCCTG-ATGT-GTCC-AGGCAT-CCA-TGTTTGCCCAACTCTTGCTTTT-G-----TATTTGTGATTT-C--AACTA--AT---------CACTGTTCGTTATCATTACCTTT-ACATATAACCTGTgtttgttttaccaatggtgtatatcacaattattt
gi|9 : C-AGGGGT-C-G-TGTTTGTCCAACTCTTG-TATT-GTAATCTAGTTAGAACTTACGA-ATTG--AT---------CACTTTTCATTATCTTTGCCTTT-a
blockSeqs : A A GT A AA AC T T T T T G T CCC A C G GTG G A C TT A T G G A T A T A GA AACTACCTA A A G A T
blockSeqs : . C . G G . T . . A T G T C G C . GAT . G C TC T . . . A . C T C . . . . T C .
blockSeqs : T . A G . A . . . . . . . A T . AA . T T TC A . . . . . . . A . . . . C
blockSeqs : . . T . T . . . A C . . . . A TT C . . . . . . . G . . . . T
blockSeqs : . . . . . . . . T C . . . . . . . A . . . . T
blockSeqs : C . . . . . . . . A . . . . A
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . A . . .
blockSeqs : . . T . . .
blockSeqs : A . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGGGTAA-ATGCTGTCTGACGCGTTTCAGAGCAAT--TGTTAG-GCCGTTCTTTAT--ACACTGA-TTTTGACTAC-GGA-TACTTCGGTTTA--CCTGATCAAGACAATGGACTCACGGCGGGTGTGACCGGTCA-ACAGGGG-A-GCT-TACTCCTCCTAGGCACCTGATTCCACNTCTG-GTGT-GTCC-AGGGGT-CCG-TGTTTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-TCAT-TNANCTGTCACTG
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGGGTAA-ATGCTGTCTGACGCGTTTCAGAGCAAT--TGTTAG-GCCGTTCTTTAT--ACACTGA-TTTTGACTAC-GGA-TACTTCGGTTTA--CCTGATCAAGACAATGGACTCACGGCGGGTGTGACCGGTCA-ACAGGGG-A-GCT-TACTCCTCCTAGGCACCTGATTCCACNTCTG-GTGT-GTCC-AGGGGT-CCG-TGTTTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-TCAT-TNANCTGTCACTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAAATATACGTTCAAACAAACCATCTTATGAAAGGGGGGAGGGTCCAATCCCCGGACCCCCTCTGGATCCGCCA
Alignments
lowQualScore : 22 11 1 111 2222 111111111
lowQualScore : 00 0 6 0 0 11 6 99 99 3 6 6 3 7 2 3 666 4 1 8 6666 6 0 8 1 22 3 4 4 4 8 4 7 7 0 0 2 33 111111111 3 4 1 1 7
lowQualScore : .. . . . . .. . .. .. . . . . . . . ... . . . .... . . . . .. . . . . . . . . . . . .. ......... . . . . .
lowQualScore : 77 2 5 2 2 00 4 44 22 5 7 7 3 0 5 2 222 2 0 0 5555 7 8 2 4 44 0 4 4 0 0 0 3 3 3 1 6 99 444444444 1 4 0 0 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGGGTAA-ATGCTGTCTGACGCGTTTCAGAGCAAT--TGTTAG-GCCGTTCTTTAT--ACACTGA-TTTTGACTAC-GGA-TACTTCGGTTTA--CCTGATCAAGACAATGGACTCACGGCGGGTGTGACCGGTCA-ACAGGGG-A-GCT-TACTCCTCCTAGGCACCTGATTCCACNTCTG-GTGT-GTCC-AGGGGT-CCG-TGTTTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-TCAT-TNANCTGTCACTG
Reference ( family-416 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGGGTAA-ATGCTGTCTGACGCGTTTCAGAGCAAT--TGTTAG-GCCGTTCTTTAT--ACACTGA-TTTTGACTAC-GGA-TACTTCGGTTTA--CCTGATCAAGACAATGGACTCACGGCGGGTGTGACCGGTCA-ACAGGGG-A-GCT-TACTCCTCCTAGGCACCTGATTCCACNTCTG-GTGT-GTCC-AGGGGT-CCG-TGTTTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-TCAT-TNANCTGTCACTG
gi|1 : CATTGGGTAACATGCTGTCTAACAAGTTTCAGAGCAAT--TGTTAA-GCCGTTTTTTAT--ACACTGA-TTTTGACTAC-GAA-TAACTTGGTTTA--CCTGATCAAGACAATGGGCTCACAGCGGGTGTGACCGGTCG-ACAGGGA-ATGCT-TACTCCTCTTAGATACCTGATTCCACATTTG-GTGT-ATCC-AGGGGG-CCG-TGTTTACCCAACTCTTG-TTTT-GTATTCTGTTTGGGACTTACGAGATTG--AC---------CACTGTTTGTTATCTTTACCTTT-TCAT-TAAGCTGT
gi|10 : taattcgacatactcgatatatctacgatgactaacgatttagtttgccagtatggtctgcGATTCACCATTTGTGCAT-GACTGAGAGGTACTG-AGTTT------CTCTTA-GATT-GTATTCC-TTTGGGACCAATGCGATTA--AT---------CA--GTTTGTTATCTTTGCTTTT-TCAT-TGAcattgta
gi|11 : CGTTCTTTAT--ACAC-GA-TTTTGACTGC-GGA-TAC--CGGTTTA---CTGATCA--ATAATGG-CTC-CGACGGGTATGATTGGTCAGACAGGGA-A-GCT-TACTgtg
gi|12 : AACTCTTG-ATTT-ATAATCCGTTTAGGACTTCTGAGATTG--ATAACTACCTATACTGTTCATTATATTCACCTTT-TAAT-
gi|13 : tgtttatcatcgT--TATTAG-ACCGTTCTGTATACACACTGATTTTTGACTACTGGATTACTTC--TTTACCCCTGATCAAGGCGAT-AACT-ATGA-AGGTGTGACC
gi|15 : TGTCTGAGAAAATTCAGACTAAT--TGTTAG-GCCATTCTTTCC--AAACTAA-TTTTGACTAT-GGA-T
gi|16 : TATTTAGGACTTACAAGATTG--AT---------CACTGTTCGTTATCTTTGCCTTT-ACAT-TTAg
gi|17 : GACTTGTGTGATTG--AT---------CGCTGTTCGTTATATTTGTCATT-TTAT-tgaa
gi|18 : CTTACGAGATTAGAAT---------CACTGTTTGTTATATTTGCCCTT-acattat
gi|2 : A-ATGCTGTCTGACGCATTTCAACGGCAT--T-TTAT-GCCGTTGTTCAT--TCACATA-TTTTGACTAT-GAA-Tgta
gi|2 : aCATTGGGTAA--TGCAGTCTGATGTGTTTTATAGCAATGTTATTAAAGCCGTTTTCCAT--ACATTGA-TGT--GCTAT-GGAATGCTTCGGT--A--CCTGGTCAAGACAACGGGTTCACAGCGGATGTGACCGGTCA-ACAGGG----GCTGTATTCCTCCTA-GCACCTGA-TCCATTTCTG---GT-GTCC-AGGAG--CCGTTGTTTGTCCAGCTCTTGATTTT-GTATTCTATTTGGACCTCACGAGATTT--AT---------CACTATTCGTTA-CTTTGCCTTT-gggtaatgcagtctgatgtgttttatagcaatgttattaaagccgttttccatacattgatgtgctatggaatgcttcggtacctggtcaagacaacgggttcacagcggatgtgaccggtcaacaggggctgtattcctcctagcacctgatccatttctggtgtccaggagccgttgtttgtccagctcttgattttgtattctatttggacctcacgagatttatcactattcgttactttgcctttac
gi|3 : aattcatagtcaaaatatgtgaatgaacaacggcataaaatgccgttgaaatgcgtcagacagAAGGCAATGAACTCATGGTGGGTGTGATCGGTCA-ACAGGGGTG-GAT-TACTCC-CCTAAGCACCTGATCCCACATCTT-GTGTGGTCC-AGGGATACC---GTTTGCCTATCTCTTA-TTTT-GTAATCTGTTATGGTCTT-----------AT---------CACTGTTCGTTATCTTTGTCTTT-TCAC-TCAac
gi|4 : ctttccgtgtgTCAAGATAATGGACTCACGGCGGATGAGATCGGTCA-ACAGAAG-ATGCC-TACTCCTCCTAGGTACCTGATCCGA-----G-GTGT-GTCC-AGGGGT-TCG-TGTTTGCCCAACTCTTG-TTTTTGTATTCTATTAGAGATTTACGAGATTG--CT---------CACTGTTCGTTATTTTTGCCTTT-TCAT-TTAATTG-CACTGttcaatatctgttgtgttatggatacaaatacaaaa
gi|5 : TCTG-GTGT-GTCC-AGGGGT-CCG-TGATTGCCCAACTCTTG-TTTTTGTATTATATTTAGGACTTACGAGATTG--AT---------CACTGTTCGTTATATTTGCCTTT-ATAT-TTAgtgtttgtattctggtgtaaa
gi|6 : CCCGATTCTACCTCAG-GTGG-GTTC-AGGAGT-CCA-TGATTGCCCAACTCTTG-TTTT-GTATTCTATTTGGGACTTACGAGATTG--AT-----------GTGTTTGTTATCTTTGCCTTTATCAtaaaacatattttagcaaacaattttgacgaaagggagggatccatttcccggacccccatctggatccgccac
gi|7 : -GTGT-ATCC-AGGAAT-CTG-TGTTGGACTAATTCTTG-TTTA-GTTTTGTGTTTAGATCTTTCGAAATTG--AT---------CACTCTT--TTATCTTacaccaatgatactagctttcttat
gi|8 : taaatacctattgaaac-GCT-TACCACTCCTGTGAGCCTGAC-CCACCCCTG-ATGT-GTCC-AGGCAT-CCA-TGTTTGCCCAACTCTTGCTTTT-G-----TATTTGTGATTT-C--AACTA--AT---------CACTGTTCGTTATCATTACCTTT-ACATATAACCTGTgtttgttttaccaatggtgtatatcacaattattt
gi|9 : C-AGGGGT-C-G-TGTTTGTCCAACTCTTG-TATT-GTAATCTAGTTAGAACTTACGA-ATTG--AT---------CACTTTTCATTATCTTTGCCTTT-a
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAAATATACGTTCAAACAAACCATCTTATGAAAGGGGGGAGGGTCCAATCCCCGGACCCCCTCTGGATCCGCCA