lowQualScore : 111111111111111111 11111111111111111111111111111111 2222222222222222222222222222222 111111111111111111111
lowQualScore : 1 666666666 11111 1 444444444444444444 1 111 111 222222222 444444444444444 1 1 5555555555555555555555555555555555 1 11111 11 111 1 222222222222222 111111 88888888888888888888888 33333333333333 22222222 222 111 55555555555 222222 111 111 1111 1111 22222 11 1111 11 11 8888888888888888888888888888 11 111 333333 111 3333333333 1 11 33333333 1 22222222222 1111 1111 1 1 33 11 2222 1 1 1 33333333333333333333333333333333 1 1 22 22 55555555 2222222222222222222222222222222 4 1 999999999999999999999999999999999999 55 1 22 22 2 22 2 2 44 5555555 666666 4 22222 3333 22 22 000000000000000000000 1 1 2 1 222222 4 1 1 1 1 1 8888 4 1
lowQualScore : 5 000000000 0 88888 3 1 1 999999999999999999 4 5 5 333 4 4 4 4 000 55 66 55 3 3 1 333333333 8 666666666666666 44 3 7 88 3 4 2 66 1 1 4 2222222222222222222222222222222222 0 66 22222 5 5 5 66 0 4 4 4 777 4 00 4 4 999 4 4 33 3 3 6666 7 666 2 2 66 5 66 777777777777777 0 66 0 0 999999 2 5 4 777 4 0 77 7 1 2 0 88888888888888888888888 5 8 6 66666666666666 3 5 77 5 77 5 44444444 0 444 5 3 111 6 6 44444444444 777777 222 111 9999 5 5 4 2 3 6 3 6 4 4444 99 5 6 00000 8 33 3333 0 0 11 0 44 3 4444444444444444444444444444 8 11 8 444 8 666666 8 777 5555555555 6 3 0 33 66666666 0 44444444444 8 7777 5555 3 0 3 2 9 00 7 6 88888 88 8 1 4 1111 3 0 3 7 0 77777777777777777777777777777777 6 6 6 3 5 9 11 00 0 0 6 44444444 0 7777777777777777777777777777777 8 0 4 1 888888888888888888888888888888888888 6 55 7 6 77 77 4 0 77 0 3 66 6 8888888 555555 0 6 33333 1111 77 77 111111111111111111111 5 6 5 0 5 666666 0 7 5 6 5 6 7 6 7 5555 6 6 0 5 6
lowQualScore : . ......... . ..... . . . .................. . . . ... . . . . ... .. .. .. . . . ......... . ............... .. . . .. . . . .. . . . .................................. . .. ..... . . . .. . . . . ... . .. . . ... . . .. . . .... . ... . . .. . .. ............... . .. . . ...... . . . ... . . .. . . . . ....................... . . . .............. . . .. . .. . ........ . ... . . ... . . ........... ...... ... ... .... . . . . . . . . . .... .. . . ..... . .. .... . . .. . .. . ............................ . .. . ... . ...... . ... .......... . . . .. ........ . ........... . .... .... . . . . . .. . . ..... .. . . . .... . . . . . ................................ . . . . . . .. .. . . . ........ . ............................... . . . . .................................... . .. . . .. .. . . .. . . .. . ....... ...... . . ..... .... .. .. ..................... . . . . . ...... . . . . . . . . . .... . . . . .
lowQualScore : 5 000000000 7 77777 3 0 0 333333333333333333 6 7 0 888 0 0 0 0 999 00 33 00 6 6 1 222222222 2 222222222222222 66 0 3 33 6 0 2 11 8 7 4 9999999999999999999999999999999999 8 99 55555 0 0 0 11 1 4 4 4 888 4 66 4 4 333 4 0 99 6 6 5555 3 444 1 2 44 0 99 555555555555555 8 99 1 2 222222 0 0 4 888 4 1 99 3 7 3 1 11111111111111111111111 7 6 0 55555555555555 5 7 99 7 99 7 22222222 3 555 0 5 777 7 7 55555555555 333333 888 777 9999 7 7 3 7 7 7 5 7 0 2222 22 0 4 00000 0 00 2222 8 8 00 8 00 8 2222222222222222222222222222 0 00 0 000 0 666666 0 000 8888888888 5 2 0 88 22222222 0 55555555555 0 0000 6666 2 0 2 5 2 88 3 7 00000 33 3 0 7 0000 3 7 3 0 7 77777777777777777777777777777777 7 0 0 7 0 0 77 77 7 7 0 55555555 2 2222222222222222222222222222222 3 0 0 5 555555555555555555555555555555555555 0 00 0 0 55 55 0 0 55 0 0 00 0 0000000 000000 0 0 00000 0000 55 55 555555555555555555555 0 0 5 0 0 555555 0 0 0 0 0 0 0 0 0 0000 0 0 0 0 0
consensus : TGACTTTGACTTTGCAATCGT-AAC-T---TTCTCT--TT-TAT-GTAGCAATGTAC------CACTNNCACATGCTTATGGTGTGTGGATATATAA-AA-TGGCG---AA-G-T-AA-CAA-N-GT--AT-CAAACGT--AATCA-TAG-TCCAAAAAA----AC--ACATACAAAN----N-CGA---GTGT--AGGG-CAA-CA-C-GGACCTCC--GACGAAA-GC-GANG--GCAG---G-------ATCAGGT-----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GC-CCGTAG-TC-GAA-A--CAAA-G---TAAACGGGATTACCCGT-CGTC-AAATC--TAGTACGAAAAT--GACAGTCTAA--CAAAGGGTATGAAA-CAAATCA-GTC-AACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCGTTATA-----GCGACCGTAGA-------ATTT-GCGAAATGATGACTTTAA---A---GAT----TCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGTAGCTTGGCCTC---GAT-TTAAAA--A-T-A----TCATACGCAG-AACA--NGCC---CTTGCGT-ATCG-AA-TCAGTTGAGAGA-CATAC-ACACCATANGC----AGGT--GATAATGGTACATT-----GCTA-CA-TAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGA---GN--CATCA--C-NTTT-ATTNT--AAT-GT--AGT-TG---TCAG-TCT--NCC-ATTAGA-GTCAAATG----T----CAANTAAAAT-AT--CCAA--------ATA-CGAAGCANATNTGTNA--GACTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGNACATAATTGTGAAAATT--ATGATCGTTAATCGATAAGNCATCGTNT--ATAT-ATCTA-TATGTAAGGTTGAAGGACACGACAAG---TTTTTT--TG-------------------TTTTTATCCCGTAA-AGTTTTTGAACGAATT-TGCTTCGTATGAAT-ATAAAAACAAATCTGCTAATAAGGGGGCACAATTAGTGCCC-AT-G-G-AATACCAACAGATTGTT-G---A-GA--CG----C--C---------AAAGACTACAAAAATATTGTCNATNAGGAAACCTCNACAACTGGCATTNCTACNTAACACTCCCNACTTCAGAGTACTTGTGCGTAGATTCAGGGTGGTNTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTTAGAAATTTTCGTATCTTTCGGGGGGACAGTTTTGTGTTTAAAAACTAAGTTATCTATAATCTGGAAAGAAGCGGCTAGANAGTTATCGGTTCAATCTCTAGTGAGGAATCGTTGTAATAAAGTGTGGAGAAAATCGTGACGTTTTGATGCAGTCAATTTTAGAAAATTCTCGTGATTTTAGGTTATCCAAAAGCTCTTTAATTAGAATTTTTAAGAATCCACATCTGATTGACACCACTTCTAGAATATGTAGT
Reference ( gi|1 ) : TGACTTTGACTTTGCAATCGTAAATGT---TTCCCT--TT-TAT-GTAGTAATATAC------CA----------CTTATGGTGTGTAGATATGTAA-AA-TGGCG---AA-G-T-AA-CAA-A-GT--AT-CAAACGT--AATCA-TAG-TCCAAAAAA----AC--ACATGCAAAT----A-CGG---CTGT--AAGG-CAA-TA-C-GCACCTTC--GGCGAAA-GC-AACG--GCAC---T-------ATCAGCA-----GCCAGG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-A-TGA-GC-CTGTAG-TC-GAA-A--CAAA-G---TAAACGGGGTTACCAGT-CGTC-AAATC--TAGTATGAAAAT--GACAGTCTAA--CAAAGGGTAGGAAA-CAAATCA-GTC-AACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CGAGGTCATTATA-----GC-------GA-------ATTT-GCGGAATGGTGACTTTAA---A---AAT----TCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGT-GTTTGGCTTC---GCT-TTAAAA--A---A----TCATACGCAATGACA--TGCC---CTTGCGTAATCG-AA-TCAACTGAGAGA-CATAC-ACACCATAAGC----AGGT--GATAGTGGTACATT-----ACTA-CA-GAAAA-AAAGAAAGTTG--ACAATTGCA-AAGTCAA---AG--CATCA--C-CTTT-ATCTTTGAAT-GT--AGT-TG---TCAG-TCT--CCT-ATTAGA-GCC-AATA----T----CAAGTAAAAT-AT--CCAA--------ATA-TGAAGCACATCTGTCA--GATTCTGT-GG----TGTCCTTTATT--TTC-AAGTTCGTCAGGATATATATCAAATGGACATAATTGTGAAAATT--ATGAATGTTAATTAATAAGACATCGTCT--ATAT-ACCTA-TAAGTAAGGTTGAAGGACACGGCAAG----TTTTT--TG-------------------TTTTTATCCCGTAATAGTTTCTGAACAAATTCTGCTTCGTGTGAAT-TTAAAATTAAGTCTGCCAATAAGGGGGCGCAATTAGTGCCCGAT-A-G-AATACCAACAGATTGT------A--------------C---------AAAGACTACATAAATA-TATCTATAAGAAA--C-CAA------GCA-TGCT-CTTAATA---TCTTCTTCAGAGTACTTGTGTG--GAATCAGAGTGGTTTCTG--ACAAAAT--ATGTATCTT-GTT--TCC-CAATGACC-AGAAACTT--GTAT-TTTCGGGTG--CCGTTTT-TGTTCAAAAAGCAA-TTATCAGTTATCTGAAAA--AGC--CTAGAT---------TTTAATTTT--GTGAGGAATTGTTGTA-TAAAGTGTGGAGAAA-TTAT-ACGTTT-GATGCAGTCAATTTTAGAAAAATCTAGTGACTTGAAGTTTTCTATAAGCTCT----TTAGAGTTTTTGAGAATCCACATC-GATTGACACCACTTATGGAATATGTAGTGGAACAGTGCATAGAGGTAACCGCCATATCAACAAGTAAAGAAGGAAGGTTAAACCGTTGATTCTTATCAGAAATTGTCATCGTCAAACATAAACACAGATAACAGACAGATTCATGAGGGAAATATACTTCAAAGTTTAAACAAAAATAAGAG
gi|3 : TGACTT-GACTTTGCAATTGT----GTCACTTTTCT--TT-TAT-GTAGCAATGTACGACTATCACTTG------CTTATGGTGTGT
gi|20 : atcaaacgtaatcatagtccaaaaaatacaacccacattcaaaatcgagtgtagggcaacacagaccttcgaaggcaggatcaggtgccatggaggagtaagctgctaaccgggcacacccgccgtgagcccgtagtcgaaataaagtaaacgggattacccgtcgtaaaatctagtatgaaaatcagtcaacatatgactaattatataataatttgtaatcgcaaacaaggtcattatagcgaccgtagaatttgcgaaagaatgactttaaacgagattcgttataaccctgcaacatcaactttttggttagtagttggcctcgctttaaaaaatcatcataagcatggaatgcccttgcatatcgaatcaaataagagatcacTTGAACTTGCAATCGTGAAC-T---TTCTCT--TTCTATGGTAGCAATATAC------tcacgtttattatataatggtagtctgtcagtctgcattagagtcaaatgttaattaaaataatccaaatagtaaagcacatctgtcatattctgtgggtgtcctttatttcatgtcgtcaggatatatcaaaggtcataaattcggtgaactttaatcaatg
gi|2 : cactttaaataaaattaagatgattatcgaataaactggaaaatatcacacagtaagcaggcgattatGACTTAGCAATCATCAAT-T---CTCCATATTC-TAT-ATAGTAATGCAC------CACTATCACATGCTTATGGTGTGTAgttaccacgctttcatatacaatgcaattgttaccctaccattagagttaatc
gi|5 : ctatggcgaagtgacaatgtattgaatgtaataagagtcccaaaaacgcatacaaaatcaagtgtagggcaacacagccctctgacaaaagcgaaggcagggtcaggtgccatggaagtgtaagcatcctatgctgaccggtctcaaacgccgtgagcccgtagtcaaaataaagttaacgttgttgtcagctttcaaatccagtacggaaatgacagtctaacaaggatatgaaacaaataagtcaacacatgacttagtgatcatttgtaatcgtaaacatgttcattatagcgaccgtagaatttgcgaaatgatgacttttaatgggatctgttataaccctgcaccatccactttttggataatagttggcctcactttaaaaaatcatcatactcatgacatgcccttgtctttgcgatcaactaagaggcaTATGGATAC--AA-AA-AGGCG---AA-G-TTAA-CAT-T-GT--GT-CAAACGT--AATCA-TAA-TCCAAAAAA-----C--ATATACAAAA----T-CGA---GTGT--AGGG--AA-CA-C-GGACCTCC--GACGAAA-GT-GAAG--GCAG---G-------AACAGGT-----GCCATG--GA-----GG-A-AT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-AC-CTGTAG-TC-GAA----TAAA-G---TAAACGAGATTACCCGT-AGTT-AAATC--TAGTAGAAAAAT--AACAGTCTAA--CAAAGGGTATAGAA-CAAATCA-GTC-AACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTC--TATA-----GCGACCGTAGA-------ATTT-GTGAAATGATGACTTTAAACGA---GAT----TCGTtgccatataatgtagctgtcagtctgccaatagagtaaatattaagtaaatatcaaaatatgaaacatattggttaggttctgtggtgtcctatatttcgagttcgtcgggatataccaaatgtacataattgtgaaaagtatgattggtaattgataagacatcgtttatatacctatatgtaaggttgaaggacacggcaagttttttttttgttttttttttttttttttttttttttcccgcaatagtttttttacaaaatatgcatcgtttgaatacaaaaataaatttgccaataagggggcacaattagtgcccatggtaatatcaacagattgt
gi|6 : ttttgtttacctgaggtttgttagatcgagtaaactattttgaagtttctgttcaagaaatgctattaagtgtgttaactaaATATAA-AA-TGGCG---AA-G-T-AA-CAA-A-GT--AT-TAAACGT--AATCA-TAG-TCCAAAAA------C--ACATACAA-T----ATCGA---GTGT--AGGG-CAA-CA-C-AGACCTTC--GACAAAA-GC-AAAG--GCAG---G-------ATCAGGT-----GTCATG--GA-----GG-A-GT-AAGCA--TCCAC-TGC-TCA-CC---G-G--TCAC-ACTC-GCC-G-TGA-GC-CCTTAG-TC-GAA-A--TAAA-G---TAAAC-GGATTACCCGT-AATC-ATATC--TAGTAGAAAAAT--G--------A--CAAAGGGTATGAAA-CAAATCA-GTC-AACATATGACC---TA-GTTATAATTTGTAGTCGCAAA--TAAGATCATTATA-----GCGACCGTGGA-------ATTT-GCGTAATGATGACTTTAAACGA---GAT----TCGTTATAACCCTGC-AG--CA-TCAAC--T-
gi|7 : gaaacgagcattgtctttacagtggaggattctaaatcttttacgtcattattatcATCTAA-AA-TGGCG---AA-GGT-AA-CAA-T-GT--TT-AGAACGT--AATCAATAG-ACCCAAACA----AC--ACATACAA---------------TGT--AGGG-CAA-CT-C-GGACCTCC--A-CAAAA-GCGAACA--GGA------------ATCAGAT-----GTCATGAAGA-----GG-AAGT-AAGCA--TCGTCCTGC--GA-CC---GCG--TCACGACTC-GCCCG-TGA-GC-C-GTAG-TC-GAA-AAACAAAAG---TAAACGAGGTTACCCGT-CGTC-AAATC--TAGTACGACAAA--AACAGTCTGAATCAAAGGGTATGAAGGCAAATCA-GTC-AACATATGACT---TG-ATGGTAATTTGTAATCGCAAA--CAAAGTCATT-TA-----GCGACCGTAGA-------ATTT-GCGAAATGAT-ACTTTGA---
gi|26 : cctacacaacttggtgtttcagtggttgatatggcacggttatgtattagacgttttctttctctctgcATATAA-AA-TGGCTT--AA-G-T----CAATA-GT--AT---AACGT--AATCT-GAG-TCCAA-AAA----AC--ATAT---AAC----A-CAA---ATAT--AA---CAA-TA-t
gi|23 : tcattatgactttccTATAA-AT-TGGCG---AA-G-T-AA-AGA-ATGT--GT-TCAACGT--AATCA-TAG-TCCGGAAAA----AT--ATACACAAAG----G-CGA---GTGG--AGGG-AAA-CA-C-taaac
gi|12 : gcaaatgcattataatttgaatggtatacctTAATAG-TAGCG---AA-G-T-AA-CAA-A-GT--ATCCAAACGT---ATCA-TAGCTCCACAA----------ACATACAAA-----A-TGA---GTGTAGAAGGTCAA-CA-C-GGACCTTC--GAGGAAA-GC-GACA--G-ACAGGT-------A-CAGGT-----GTCAGT--GATTACGGG-A-GTCAAGCA----CTC-TGC-TGACCC---G-G--TCAC-ACCCGGCC-G-TGA-TCACTG--GCTC-GAAGA--CAAA-AGTTTAAACAGAG
gi|14 : gaaaatttagttagtgcgtttttaaaaactattctctaaatttttTAA-AACTGGCGCGTAATG-T-AAACAA-T-GCTGAT-CAATTGTTAAATCA-TAG-TCCCCAAAA-----C--ATAAACAAAA----T-CAGAGTCTGT--AGTGTCAA-CAAC-GGACCTCCCCGACAAAACGT-AGCGAAGGAG---G-------ATCAGCGTCCTCGCTATG--AA-----GGGA-GT-ACACAATTTCTC-TGCCTGA-TCTGCG-GC-TCAC-ACCC-GCC-GTTAA-GC-CC-TAG-TC--AA-T--TAAATG---TAAACgagatttactcctctaatcccttaacaaatact
gi|2 : agactaaA-TGGCG---AA-G-T-GA-CAA-T-GT--AT-TGAATGT--AATAA-GAG-TCCCAAAAA-----C--GCATACAAAA----T-CAA---GTGT--AGGG-CAA-CA-CAGC-CCTCT--GACAAAA-GC-GAAG--GCAG---G-------GTCAGGT-----GCCATG--GA-----AG-T-GT-AAGCA--TCCTA-TGC-TGA-CC---G-G--TCTC-AAAC-GCC-G-TGA-GC-CCGTAG-TC-AAA-A--TAAA-G---TTAACGTTGTTGTCAGC-TTTC-AAATC--CAGTACGGAAAT--GACAGTCTAA--C-AAGGATATGAAA-CAAATAA-GTC-AACACATGACT---TA-GTGATCATTTGTAATCGTAAA--CATGTTCATTATA-----GCGACCGTAGA-------ATTT-GCGAAATGATGACTTTTA---ATGGGAT----CTGTTATAACCCTGC-AC--CA-TCCAC--T-TTTTG--------GATAAT-AGTTGGCCTC---ACT-TTAAAA--AATCA----TCATACTC-ATGACA--TGCC---CTTGTCT--TTGCGA-TCAACTAAGAGG-CATAC-ACACCATAAGC----ATGT--GATAGTGGTGCATT-----ACTA-TA-TAGAATATGGAGAATTG--ATGATTGCT-AAGTC-----TG--C--CA-------T-AT-----AAT-GT--AGC-TG---TCAG-TCT--GCC-AATAGA-GTA-AATA----T----TAAGT-AAAT-AT--CAAA--------ATA-TGAAACATATTGGTTA--GGTTCTGT-GG----TGTCCTATA-T--TTC-GAGTTCGTCGGG--ATATACCAAATGTACATAATTGTGAAAAGT--ATGATTGGTAATTGATAAGACATCGTTT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAGTTTTTTTTT--TGTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGCAATAGTTTTTTTACAAAATATGCATCGTTTGAAT-ACAAAAATAAATTTGCCAATAAGGGGGCACAATTAGTGCCC-AT-G-GTAATATCAACAGATTGT------
gi|21 : ctA-A-T-AA-CAA-G-GT--AT-TAAACGT--AGTCA-TAG-TCCCAAAAA----AT--ACACACAAAA----T-CGA---GTGT--AGGG-CAA-CA-C-GGACCTCC--GACAAAA-GT-GAAG--GTAG---G-------ATCAG
gi|28 : agcattcatatttcttacattgtataaggataatgttttatcttctttttatctatac-G-T-AA-CAA-A-GT--AT-CAAGCGT--AACCA-TAG-TCCAAAAA---------ACATGTAACT----G-CA-----TGT--AA
gi|3 : --AT-CAAACGT--AATCA-TAG-TCCAAAAAATACAACCCACATTCAAAA----T-CGA---GTGT--AGGG-CAA-CA-C-AGACCTTC--G---AAG-GC-A--G--G--------------ATCAGGT-----GCCATG--GA-----GG-A-GT-AAGC---------TGC-TAA-CC---G-G--GCAC-ACCC-GCC-G-TGA-GC-CCGTAG-TC-GAA-A--TAAA-G---TAAACGGGATTACCCGT-CGTA-AAATC--TAGT------AT--GA--------------------------AAATCA-GTC-AACATATGACTAATTATATAATAATTTGTAATCGCAAA--CAAGGTCATTATA-----GC-------GACCGTAGAATTT-GCGAAAGAATGACTTTAA---ACGAGAT----TCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGT-AGTTGGCCTC---GCT-TTAAAA--AATCA----TCATAAGC-ATGGAA--TGCC---CTTGCAT-ATCG-AA-TCAAATAAGAGATCACAC-ACACCATAAGC----AAGT--GATAGTCGTACATT-----GCTA-CA-TAAAA-GA--AAAG-TGACACAATTGCA-AAGTCAA---GT--CATCA--C-GTTT-ATTATATAATGGT--AGTCTG---TCAG-TCT--GC--ATTAGA-GTCAAATG----T----TAATTAAAATAAT--CCAA--------ATAGTAAAGCACATCTGTCA--TATTCTGTGGG----TGTCCTTTA-T--TTC-ATG-TCGTCAGG--ATATATCAAA-GGTCAT--------AAATTCGGTGAACTTTAATCAAT
gi|4 : ATACAAATTATAA-CAG---TTG-----GG-CAAACA-C-GGACCCTG--AGTGGGA-TC-AGGT--GCCC---TGGGTGGGATCAGGT-----GCCTAG--GA-----GG-A-GT-AAGCA--TACCC-TGC-CGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GC-CTTTTC-TCTTTA-A--C-AA-G---TAAACGGAATAATCCGTACGCT-AAATC---AGTATACATATAGAACGGCCCAA--CAATTGGTATGTAA-CCGGTCA-AAC-AACACTTGACC---CA-CAGACAGGTTGTACTGGCAAA--CTAGATCGTTATA------------------------------------ATGACCATAA---A---AGT----TTGCGA-AA---TGA-TA--CA-TCAAC--T-TGTTT--------GTCAGTAGCCT-GCCTC---GAT-TTCAAA--ACTGA----TCATACGCAG-AACA--GGTT---TTTGCATTATCG-AA-TCAGTTGAGAg
gi|16 : agaggtgaaataacgtcgtaaatcaatctaataaatcctatgaggaCA--TCCCT-AAT-TGA-CC---G-GGTCCAT-A-TC-GCCGG-TGACGC-CTATAC-TT-G-A-A--CCAG-G---TACACACAATAATCTGT-AGTTAAAATCAATA-TATCAAGA------AG-CCAA--CAACTGATAG-----CAA--CACGTCTAACAT-TGACC---CA-AT-ATATGTTGT-ATTGCAAAACCAA--TCGCTGTAACGACAC-------GA-------ATTTGGCGAAATGtaacctcagcatgcgtcatcaatgtgtcaaaaataaaaattaatcgttattaaatat
gi|24 : agc-CCGTAG-TC-GAA-A--CAAA-A---TAAACGGGTTTACTCTT-CATC-AAATC--TAGTACGAA--T--G----TCTAA--CAGAGGGTATGACA-TAACTCA-GTC-AACATATGACT---TA-GTGATaaaatcgac
gi|34 : GTAG-TC-GAA-A--TAAA-G---TAAACAGGATTACC
gi|31 : C-AACACATGACT---TA-GTGATAATTTGTAATC
gi|10 : TTTAA---A---AACGTGACTGTTGAACCCCTGC-AAATCACTCAACGTTGTTCTGTCCAAAACGTCCGTAGTTTGCCTCCCGAGATATCAAAA--A---ACTGATCATAT-CAGAAACAAGTTTC---TTCGTGTAATTG-AAATAAGTTGAGA-A-CATACCACACCATATGCAGTGAGGTTGGAAAATGCTA-ATTTAGCAAATA-TG-GAGAA-AAAGAA--TTG--ACAG-TGC--AAGCGAAATGAA--CATCAATC-CCGT-GTTTTTAAAT-TT--GGA-TGTATTCAGATTTGACCG-TTTAGATGCCAAATG----TGATACATATATAAT-ATCCCCAATTCCGCCTATG-CGAAGGA----TG-GA--GACTCTGT-GG----TGTCGTTTATT--Tagtaatac
gi|30 : tTTATAACCCTGC-AA--CA-TCAAC--T-GTTTG--------GTTGAT-ACTTc
gi|9 : CCCTGCCAA--CA-ACAAC--T-TGTCT--------GTAAGTAGCTTG-CCTC---GAT-TCAAAACTG---A----TCATACGCAG-AACA--AGCT---CTTGCGTA-TCG-AA-T-AGTTGAGAGA-C-TAC-ACACCATATGC----AGGT--GATGATGGAATATT-----GCTA-CATGAAAT-ATGCGAAGTGA--ACGATTGGAGAAGCTGA---AATTCGTTC--C-GGTT-GTCAT--AAA-GTTGAGT-AG---TTAG-TTTTGCCTCGTTAAT-GTC-AATGTTTTT----CAATTAAAAT-AT--CCAA--------GTA-CGAAGCAGACATGGAAGGGACTCTGT-GGGTTATGTCTCTCACTACTTCAAAGTT--TC-GGATtg
gi|25 : aaccCCTC---GAT-TTAAAA--ATCGA----TCATAC-CTAGAACA--AGCTTTTCCTGC---ATCG-AA-TCAGTTGAGAAA-CATTT-ACCATATATGC----GAGT--GATttttttaaccaatattgaaatgatagtaaccccagtcgggaatgtt
gi|20 : gtagcttaATCG-AA-TAAACTGGAAAA-TAT-C-ACACAGTAAGC----AGGC--GATTAT-GTATATT-----GCTACCA-TAGAA-AGAGAAAGTTC--ACGATTGCA-AGTTCAA---GT--TACCA--CGCTTTCATATAC-AAT-GC--AAT-TG---TTAC-CCT--ACC-ATTAGA-GTT-AATg
gi|13 : cactttaaataaaattaagatgattT-GG----TGTTCTTTATT--T-C-GAGTTCGTC-GGA-ATGTATTAAATGCACTTAATTATGAAAATT--ATCATTGTTAAGTGATAAGGCATCATCTGCATATTATCTA-TATGTAAGGTTGAAGAACACGACAAG----TTTTTCTTG-------------------TTTTTATCCCGTAA--GTTTTTGAAAAAATT-TGCTTCGTATCGATATTAAAAT-AAGTCTGCTAATAAGGGGGCACAATTAGTGCCC-AT-ACA-AATACCAACAGATTGT------ACAAGACATGGTCTCC---------AAAGACTACATAAATc
gi|11 : AGTCATCGTAG--ATAT-ATCGAGTATGTCGAATTAAAGGCTACCACTAGAGATTTCCC--TC-------------------TTCTCAT---GTAGAAGCTTTTGAATGAATTCTGCTTCGTAAGAAT-ATAAAAACGGACCAGCTAACAAAGGAGCACAGTTCGTGCCC-AT-G-GAAATTCCAGCGGACTGTTTG---AAGACCTGATCAC--C---------AAAAACTACAAAGATATTGTCAATGAGGAA--CTCCA------GCATTGCT--TTAACA---TCAACTTCAGAGTACTTGTGCGTAGATTCAGGGTGGTgctt
gi|8 : ttagacagcatgttacccaatggcagaccatactggcaaactaaatcgttAAGGGAGCACAATTAGTGCCC-ATAA-G-AATAACAACAAATTGTTGGAAAA--------------CTTGGTCTCTAAAGACTACAAAAATATTATCTATTAGAAAACC-CAACAACTGGTA-TTCTACATAATACTCCCTACTTCAGAggtcatcagaa
gi|8 : TCTGTAACAAAATTTATGCTTCTTTGTTCCTCCTCAACGACTTAGAAATTTTCGTATCTTTCGGGGGGACAGTTTTGTGTTTAAAAACTAAGTTATCTATAATCTGGAAAGAAGCGGCTAGATAGTTATCGGTTTA---TT--GTAAG-AATCGT-GTAATAAA-TGTGGAGAAAATCGTGACGTTTTGATGCAATCAATTTtagctcttgctacgattcgaagcgcgtggcctctcggaattagaacaatggcgttattcttactctgtaacaaaatttatgcttctttgttcctcctcaacgacttagaaattttcgtatctttcggggggacagttttgtgtttaaaaactaagttatctataatctggaaagaagcggctagatagttatcggtttattgtaagaatcgtgtaataaatgtggagaaaatcgtgacgttttgatgcaatcaatttaggga
gi|32 : aagggagcacaattagtgcccataagaataacaacaaattgttggaaaacttggtctctaaagactacaaaaatattatctattagaaaacccaacaactggtattctacataatactccctacttcagatagctcttgctacgattcgaagcgcgtggcctctcggaattagaacaatggcgttattcttacTG--ACAAAAT--ATGTATCTT-GTT--TCC-CAA-GACaggga
gi|17 : AA-TTATCTATAATCTGAAAA--AGC--CTAGAA---------TTCAATCTCTAGTGAAGAATCGTTGTA-TAAAGTGTGGAGAAA-TCAT-ACGTTTTGATGCAGTCAATTTTAGAAAATTCTCGTGATTTTAGGTTATCCAAAAGCTCTTTAATTAGAATTTTTAAGAATCCACATCTGATTGACACCACTTCTAGAATATGTAGT
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AATTGTCAGTAACCTGTCTCGATTTGAAAAAAAAATACACAGAACAATATTTTATGCGTATCAATCGGTTGACGGACATCAGGCGATAATGGATTGCTGCCACGTAAATATGGGAAGCTGATGATGGAGACGCCGAATCAATATTTTTTGTTGCAAATTTTAGTAGGTGAATTGCTCCAAAAGGTAACGCCTACATGTATGTTCAATAAATTAACC
Unaligned ( gi|18 ): TTGTAAGTTTAGCCTGCTCGGTTAAGAAAAAACTTTTAATACGCAGATCACGTCTCTTCCATATCGAATAAGTGGGAGACAATGTTACACTATATGCAGATAATCAATGGGCATATTGGTCTCATGAATACGGCGGAGTGCTTGAGCGATGTGAAGGCTAAAGGTCCATAACGGTGGTAGTTA
Unaligned ( gi|19 ): CATTTTTTCTTAGGAACACGCATCGATTAATATTTATAATATCTGAATAGAGGTCTTCGTTTTATATTTTATCGATGAAGATGATCGTTAAGTTAATATATCAAGAAATATGTGATGGAAAAGGAAAGATCGAGTACTGTTATTGATGACAGTTCCCAAACTTTTAGAA
Unaligned ( gi|22 ): AAAGCTTTTCACAAATTCTTCCGGGCACGAATAAGAAGCAGGCGGCTTACAACTAGCAACAATTTGTGCTCATAAGAATGCCTGGAGACTGTTGTAAGACCCGATAACAAATACAAATGTTGTCCATAAGGAACCCGAGTATTGCT
Unaligned ( gi|27 ): TAAATCTCATAAAGCCTATAAGGAACACAAATTACGAGTTGGGGAAGCATGAATCCCTGAATA
Unaligned ( gi|29 ): TAAATCCTATAAGGAATACAAATGATAAAAATGGGCAAACATGGATCC
Unaligned ( gi|33 ): GTCATTATATCGACCGTAGAATTCGCGAAA
Alignments
lowQualScore : 11111111111 111111111111111111111111 22222222222222222222222222222222222222222222222222222222222
lowQualScore : 6666 00000000000 11 1 111 111 111111111 11111 11111 1111111111111 444444444 11111111 1 44444444444 1111 1111111 1 3333333333333333333333333333 111 222222 222222222 11 22222222 11 1111 1111 222 1 11 11 1 1 3333 1 7777777777777777777 2222 111 2 222 333333333333333333333333 6666666666666 1 2 333333 1 2222 1 222 55555555555555555555555555555555555555555555555555555555555 1 1 11 1 11 1 1 1 1 33 888888888888888888888 11 2 2222 1
lowQualScore : 1111 6 6 6 99999999999 2 88 3 111 5 4 111 3 3 3 3 3 44 44 44 33 44 3 3 1 3 444444444 555 7777 88 55 7 3 3 55 7777 55 8888 22222 4 4 9999 66 11111 4 4 4 55 4 4 4 777 4 99 4 4 4 8 4 44 3 3 7777 6 555 44 9999999999999 3 66 4 777 4 0 66 6 4 4 4 4 555555555 33 5 66 5 66 5 88888888 4 7 9999 0 4 88888888888 2 4 4 4 1 7777 66 666 4 4 4 4 2 3 4 4 1111 2 9999 66 4 5 2 5 66 1111111 5 00 1 1 0 77 1 5 0 0 5555555555555555555555555555 6 99 6 111 6 000000 6 6 88 555555555 1 0 8 11 99999999 8 1 66 11 11 6 4444 0000 0 8 0 888 44 0 33 6 2 3 1 1 33 0 0 8888 0 7777777777777777777 2 4444 222 0 1 2 8 555 111111111111111111111111 4 7 0 1 1 6 4444444444444 7 4 3 1 0 000000 6 3 6666 3 333 1 77777777777777777777777777777777777777777777777777777777777 5 5 88 5 2 88 3 5 2 2 2 2 00 000000000000000000000 6 0 7 44 6 7 7 0 3 7 4 2 3 4 4 4444 5 2
lowQualScore : .... . . . ........... . .. . ... . . ... . . . . . .. .. .. .. .. . . . . ......... ... .... .. .. . . . .. .... .. .... ..... . . .... .. ..... . . . .. . . . ... . .. . . . . . .. . . .... . ... .. ............. . .. . ... . . .. . . . . . ......... .. . .. . .. . ........ . . .... . . ........... . . . . . .... .. ... . . . . . . . . .... . .... .. . . . . .. ....... . .. . . . .. . . . . ............................ . .. . ... . ...... . . .. ......... . . . .. ........ . . .. .. .. . .... .... . . . ... .. . .. . . . . . .. . . .... . ................... . .... ... . . . . ... ........................ . . . . . . ............. . . . . . ...... . . .... . ... . ........................................................... . . .. . . .. . . . . . . .. ..................... . . . .. . . . . . . . . . . . .... . .
lowQualScore : 0000 0 0 0 55555555555 5 33 3 777 0 4 000 3 3 3 3 3 33 22 22 88 22 1 1 5 1 777777777 444 3333 66 00 3 6 6 55 5555 55 5555 00000 0 0 4444 11 11111 4 4 4 55 0 0 0 000 0 55 0 0 0 0 0 22 3 3 2222 7 888 66 9999999999999 4 11 4 000 0 8 99 2 4 4 4 3 000000000 11 0 99 0 99 0 11111111 8 8 4444 7 4 88888888888 9 4 4 4 0 7777 11 666 0 0 0 0 5 0 4 4 7777 6 4444 11 4 0 2 4 99 0000000 7 66 4 0 1 99 7 7 7 4 4444444444444444444444444444 7 22 7 777 7 333333 7 7 33 000000000 0 8 0 00 00000000 0 0 66 66 00 7 2222 0000 8 0 8 000 22 0 88 0 0 2 0 0 88 0 0 2222 0 5555555555555555555 5 2222 222 0 2 0 0 222 888888888888888888888888 0 3 7 0 0 7 0000000000000 3 0 7 0 7 777777 7 3 3333 3 333 0 00000000000000000000000000000000000000000000000000000000000 5 5 00 0 5 00 0 0 5 0 0 0 00 777777777777777777777 7 7 3 77 7 3 3 7 3 3 0 5 0 0 0 5555 5 5
consensus : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACT--CAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA-AAAA----AC--ACAT---ACAAAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA-A---GGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAA-TTTG-CGAAATGATGACTTTAAACGA-----GATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTGGCCTC----GAT-TTAAAAA--C--A-----TCATACGCA-G-AA-CANGC--C-CTT--GC-G-T-A-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T----CATCA--CNTTTAT--TAT--AAT-GT--AGT-TGT---CAG-TCT---G-CCGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTA-ATAGTTTTTGAAC-GAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AATACCAACAGATTGT-T--AAGA--C-----CA------CCAAAGACTACANAAATATTATCTATNAGGAAACC-C-ACAA---GCATTGCT-CTTAATA-TCTC-ACTTCAGAGTA-CTCGTGCGTA-GATTC-AGG---GTGGTCTCTCGGAACTAGAACAATGGCGTTATNCNTACTCTGTAACAAAATTTATGCTTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTGGAAAGAAGC--CTAGAT---------TTTAATCTCT-GTGAAGAATCGTTGTAATAAAGTGTGGAGAAAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
Reference ( family-406 ) : TGACTTTGACTTTGCAATCGTAACT--TTCTCTTTTATGTAGCAATGTACCACTNNCACATGC-TTATGGTGTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA-AAAA----AC--ACAT---ACAAANNC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA-N---GGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCGTTATAGCGAC-CGTAGAA-TTTG-CGAAATGATGACTTTAA---A-----GATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGTAGCTTGGCCTC----GAT-TTAAAAA--T--A-----TCATACGCA-G-AA-CANGC--C-CTT--GC-G-T-A-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-ATAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--N----CATCA--CNTTTAT--TNT--AAT-GT--AGT-TGT---CAG-TCT---N-CCATT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GACTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGNACAT-AATT--GTGAAAATTATGATCGTTAATCGATAAGNCATCGTNT--ATAT-ATCTA-TATGTAAGGTTGAAGGACACGACAAG---TTTTT-TTGTT-------------------TTTATCCCGTA-A-AGTTTTTGAAC-GAATT-TGCTTCGTATGAATATAAAAACAAATCTGCTAATAAGGGGGCACAATTAGTGCCC-ATG-G-AATACCAACAGATTGT-T--GAGA--------CG------CCAAAGACTACAAAAATATTGTCNATNAGGAAACCTCNACAACTGGCATTNCTACNTAACACTCCCNACTTCAGAGTA-CTTGTGCGTA-GATTC-AGG---GTGGTNTCT-GTAAC---AA-AAT----TTATGCNT-CTTTGT----------------------TCCTCCTCAACGACTTAGAAATTTTCGTATCTTTCGGGGGGACAGTTTTGTGTTTAAAAACTAAGTTATCTATAATCTGGAAAGAAGCGGCTAGANAGTTATCGGTTCAATCTCTAGTGAGGAATCGTTGTAATAAAGTGTGGAGAAAATCGTGACGTTTTGATGCAGTCAATTTTAGAAAATTCTCGTGATTTTAGGTTATCCAAAAGCTCTTTAATTAGAATTTTTAAGAATCCACATCTGATTGACACCACTTCTAGAATATGTAGT
gi|1 : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACT-----------TATGGTGTG--TAG-ATA---TGTAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TC-AAACGT--AATCA-TAG-TCCAA-AAAA----AC--ACAT---GCAAATAC-GGCT--GTAA--GG-CAA-TA-CGCACCTTC--GGC---GA--AA----GCAA-C---GGCACTA-TCAG-CA----GCCAGG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-A-TGA-GCCTGTAG-TCGA-A-A--CAAA-G---TAAACGGGGTTACCAGT-CGTCAAATCTAGTATGAAAATG--ACAGTCTAA--CAAAGGGTAGGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CGAGGTCATTATAGC--------GAA-TTTG-CGGAATGGTGACTTTAA---A-----AATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGT-GTTTGGCTTC----GCT-TTAAAAA-----A-----TCATACGCA-ATGA-CATGC--C-CTT--GC-G-TAA-T-CGAA-TCAACTGAGAGA-C-ATA-C-ACACCATAAGCAG----GT--GAT-AGT-GGTACATT--AC---T---AC-AGAAAA-AAAGAAAGTTG--ACAATTGCA-AAGTCAAA--G----CATCA--CCTTTAT--CTTTGAAT-GT--AGT-TGT---CAG-TCT---C-CTATT-AGA-GCC-AATA----T----CAAGTAAAAT-ATCC--AA--------ATA-TGAAGCACATCTGTCA--GATTCTGT-GG----TGTCCTTTATT--TTC-AAGTTCGTCAGGATATATATCAAATGGACAT-AATT--GTGAAAATTATGAATGTTAATTAATAAGACATCGTCT--ATAT-ACCTA-TAAGTAAGGTTGAAGGACACGGCAAG----TTTT-TTGTT-------------------TTTATCCCGTA-ATAGTTTCTGAAC-AAATTCTGCTTCGTGTGAATTTAAAATTAAGTCTGCCAATAAGGGGGCGCAATTAGTGCCCGATA-G-AATACCAACAGATTGT-----A-------------------CAAAGACTACATAAATA-TATCTATAA-GAAAC-----CAA---GCA-TGCT-CTTAATA-TCTT--CTTCAGAGTA-CTTGTGTG---GAATC-AGA---GTGGTTTCT-G--AC---AA-AA------TATGTAT-C-TTGT----------------------T--TCC-CAATGAC-CAGAAACTT--GTAT-TTTCGGGTG--CCGTTTT-TGTTCAAAAAGCAA-TTATCAGTTATCTG--AAAAAGC--CTAGAT---------TTTAATTTT--GTGAGGAATTGTTGT-ATAAAGTGTGGAG-AAATTAT-ACG-TTTGATGCAGTCAATTTTAGAAAAATCTAGTGACTTGAAGTTTTCTATAAGCTCT----TTAGAGTTTTTGAGAATCCACATC-GATTGACACCACTTATGGAATATGTAGT
gi|10 : TTTAA---AAACGTGACT-GTTGAACCCCTGC-AAATCACTCAACGTTGTTCTGTCCAAAACGTCCGTAGTTTG-CCTCCCGAGATATCAAAAAACTG-A-----TCATAT-CA-G-AAACAAGTTTC-TTC--GT-G-T-AAT-TGAAATAAGTTGAGA-A-C-ATA-CCACACCATATGCAGTGAGGTTGGAA-AAT-GCTA-ATTTAGCAAAT---AT-GGAGAA-AAAGAA--TTG--AC-AGTGCA-AG--CGAA--ATGAACATCAATCCCGTGT--TTTTAAAT-TT--GGA-TGTATTCAGATTT---GACCGTTTAGATGCCAAATG----TGATACATATATAAT-ATCCCCAATTCCGCCTATG-CGAAG--GATG---GA--GACTCTGT-GG----TGTCGTTTATT--Tggaacagtgcatagaggtaaccgccatatcaacaagtaaagaaggaaggttaaaccgttgattcttatcagaaattgtcatcgtcaaacataaacacagataacagacagattcatgagggaaatatacttcaaagtttaaacaaaaataagag
gi|11 : tAATCGTTA-GTCATCGTAG--ATAT-ATCGAGTATGTCGAATTAAAGGCTACCACTAGAGATTTCC-CTCTT-------------------CTCAT---GTAGA-AGCTTTTGAAT-GAATTCTGCTTCGTAAGAATATAAAAACGGACCAGCTAACAAAGGAGCACAGTTCGTGCCC-ATG-GAAATTCCAGCGGACTGT-TTGAAGACCTGAT--CA------CCAAAAACTACAAAGATATTGTCAATGAGGAA--CTCCA------GCATTGCT--TTAACA---TCAACTTCAGAGTA-CTTGTGCGTA-GATTC-AGG---GTGGTc
gi|12 : ttagacagcatgttacccaatggcagaccatactggcaaactaTAATAG-TAGCG---AA-G-T-AA-C-AAA-GT--A--TCCAAACGT--A-TCA-TAGCTCCAC-AAA----------CAT---ACAAAAT--GAGT--GTAGAAGGTCAA-CA-CGGACCTTC--GAG---GA--AA----GCGACA---GACAGGT-ACAG-GT----GTCAGT--GATTACGGG-A-GTCAAGCA----CTC-TGC-TGACCC---G-G--TCAC-ACCCGGCC-G-TGA-TCAC-TGGCTCGA-AGA--CAAA-AGTTTAAACAGggtcatcagaa
gi|13 : gaaaatttagttagtgcgtttttaaaaactattctctaaatttttT-GG----TGTTCTTTATT--T-C-GAGTTCGTCGG-A-ATGTATTAAATGCACTT-AATT--ATGAAAATTATCATTGTTAAGTGATAAGGCATCATCTGCATATTATCTA-TATGTAAGGTTGAAGAACACGACAAG---TTTTTCTTGTT-------------------TTTATCCCGT--A-AGTTTTTGAAA-AAATT-TGCTTCGTATCGATATTAAAATAAGTCTGCTAATAAGGGGGCACAATTAGTGCCC-ATACA-AATACCAACAGATTGTAC--AAGA--------CATGGTCTCCAAAGACTACATAAATaggagatttactcctctaatcccttaacaaatact
gi|14 : ATAA-AACTGGCGCGTAATG-T-AAAC-AAT-GCTGA--TC-AATTGTTAAATCA-TAG-TCCCC-AAAA-----C--ATAA---ACAAAATCAGAGTCTGTAG--TGTCAA-CAACGGACCTCCCCGAC---AA--AACGTAGCGA-A---GG-AGGA-TCAGCGTCCTCGCTATG--AA-----GGGA-GT-ACACAATTTCTC-TGCCTGA-TCTGCG-GC-TCAC-ACCC-GCC-GTTAA-GCCC-TAG-TC-A-A-T--TAAATG---TAAACgctt
gi|15 : agacta--------GTCAGTAACCTG-TCTC----GAT-TTGAAAA--A--A-----AAATACACA-G-AA-CAATA--T-TTTATGC-G-T-A-T-C-AA-TCGGTTGACGGA-C-AT--------------CAG----GC--GAT-AAT-GG---ATT--GC---TGCCAC-GTAAAT-ATGGGAAGCTG--ATGATGGAG-ACGCCGAA--T----CA--A--TATTTTT--TGT--
gi|16 : aattCA--TCCCT-AAT-TGA-CC---G-GGTCCAT-ATC--GCC-GGTGACGCCTATAC-TTGA-A-C--CAG--G---TACACACAATAATCTGT-AGTTAAAATCAATATATCAA-G--A-AGCC-AA--CAACTGATA-GCAA-CACGTC---TAACAT-TGACC---CA-AT-ATATGTTGTA-TTGCAAAACCAA--TCGCTGTAACGACACG---AA-TTTGGCGAAATGAtgcaaattttagtaggtgaattgctccaaaaggtaacgcctacatgtatgttcaataaattaacc
gi|17 : agcAATTATCTATAATCTGAAAA--AGC--CTAGAA---------TTCAATCTCTAGTGAAGAATCGTTGTA-TAAAGTGTGGAGAAA-TCAT-ACGTTTTGATGCAGTCAATTTTAGAAAATTCTCGTGATTTTAGGTTATCCAAAAGCTCTTTAATTAGAATTTTTAAGAATCCACATCTGATTGACACCACTTCTAGAATATGTAGTaaatcgac
gi|18 : TAGCCTG--CTC----GGT-TAAGAAA--A--AACTTTTAATACGCA-G-AT-CACGT--CTCTT--CC-A-T-A-T-CGAA-TAAG-TGGGAGA-CAATGTT-ACACTATATGCAG----AT--AATCAATGGGCATATT--G
gi|2 : ttgtaagttA-TGGCG---AA-G-T-GA-C-AAT-GT--A--TT-GAATGT--AATAA-GAG-TCCCA-AAAA-----C--GCAT---ACAAAATC-AAGT--GTAG--GG-CAA-CA-CAGCCCTCT--GAC---AA--AA----GCGA-A---GGCAGGG-TCAG-GT----GCCATG--GA-----AG-T-GT-AAGCA--TCCTA-TGC-TGA-CC---G-G--TCTC-AAAC-GCC-G-TGA-GCCCGTAG-TCAA-A-A--TAAA-G---TTAACGTTGTTGTCAGC-TTTCAAATCCAGTACGGAAATG--ACAGTCTAA--C-AAGGATATGAAA-CAAATAAGTCAACACATGACT---TA-GTGATCATTTGTAATCGTAAA--CATGTTCATTATAGCGAC-CGTAGAA-TTTG-CGAAATGATGACTTTTA---ATGG--GATCTGTTATAACCCTGC-AC--CA-TCCAC--T-TTTTG--------GATAATAG-TTGGCCTC----ACT-TTAAAAAATC--A-----TCATACTCA-T-GA-CATGC--C-CTT--GT-C-T-T-TGCG-A-TCAACTAAGAGG-C-ATA-C-ACACCATAAGCAT----GT--GAT-AGT-GGTGCATT--AC---T---AT-ATAGAATATGGAGAATTG--ATGATTGCT-AAGTCT-G--C----CA--------------TAT--AAT-GT--AGC-TGT---CAG-TCT---G-CCAAT-AGA-GT-AAATA----T----TAAGT-AAAT-ATCA--AA--------ATA-TGAAACATATTGGTTA--GGTTCTGT-GG----TGTCCTATA-T--TTC-GAGTTCGTCGGG--ATATACCAAATGTACAT-AATT--GTGAAAAGTATGATTGGTAATTGATAAGACATCGTTT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAGTTTTTTTT-TTGTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGCA-ATAGTTTTTTTACAAAATA-TGCATCGTTTGAATACAAAAATAAATTTGCCAATAAGGGGGCACAATTAGTGCCC-ATG-GTAATATCAACAGATTGT-gtctcatgaatacggcggagtgcttgagcgatgtgaaggctaaaggtccataacggtggtagtta
gi|20 : ct-T-A-T-CGAA-TAAACTGGAAAA-T-AT--C-ACACAGTAAGCAG----GC--GAT-TAT-G-TATATT--GC---T---ACCATAGAA-AGAGAAAGTTC--ACGATTGCA-AGTTCAAG--T----TACCACGCTTTCATA-TAC--AAT-GC--AAT-TGT---TAC-CCT---A-CCATT-AGA-GTTAA
gi|21 : cactttaaataaaattaagatgatA-A-T-AA-C-AAG-GT--A--TT-AAACGT--AGTCA-TAG-TCCCA-AAAA----AT--ACAC---ACAAAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---AA--AA----GTGA-A---GGTAGGA-TCAG-tc
gi|23 : agcattcatatttcttacattgtataaggataatgttttatcttctttttatctatacCAAATGCATTATAATTTGAATGGTATACCTTATAA-AT-TGGCG---AA-G-T-AA-AGAAT-GT--G--TT-CAACGT--AATCA-TAG-TCCGG-AAAA----AT--ATAC---ACAAAGGC-GAGT--GGAG--GG-AAA-CA-C
gi|24 : gCCGTAG-TCGA-A-A--CAAA-A---TAAACGGGTTTACTCTT-CATCAAATCTAGTACG--AAT------GTCTAA--CAGAGGGTATGACA-TAACTCAGTCAACATATGACT---TA-GTGAT
gi|25 : GTAGCTTA-CCTC----GAT-TTAAAAA--TCGA-----TCATACCTA-G-AA-CAAGC--T-TTT--CCTG-C-A-T-CGAA-TCAGTTGAGAAA-C-ATT-T-ACCATATATGCGA----GT--GAT-
gi|26 : A---TATAA-AA-TGGCTT--AA-G-T----C-AATAGT--A--T---AACGT--AATCT-GAG-TCCAA--AAA----AC--ATATAACACAAAg
gi|28 : tcattatgactttcc-G-T-AA-C-AAA-GT--A--TC-AAGCGT--AACCA-TAG-TCCAA-AAA-----AC--ATGT---Atataacaatataaac
gi|3 : --A--TC-AAACGT--AATCA-TAG-TCCAA-AAAATACAACCCACAT---TCAAAATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GA-------------------A---GGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGC---------TGC-TAA-CC---G-G--GCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--TAAA-G---TAAACGGGATTACCCGT-CGTAAAATCTAGT------------------------------ATGAAA----ATCAGTCAACATATGACTAATTATATAATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAA-TTTG-CGAAAGAATGACTTTAAACGA-----GATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGTAG-TTGGCCTC----GCT-TTAAAAAATC--A-----TCATAAGCATG-GA--ATGC--C-CTT--GC-A-T-A-T-CGAA-TCAAATAAGAGATC-ACA-C-ACACCATAAGCAA----GT--GAT-AGT-CGTACATT--GC---T---AC-AT--AA-AAGAAAAG-TGACACAATTGCA-AAGTCAAG--T----CATCA--CGTTTATTATAT--AATGGT--AGTCTGT---CAG-TCT---G--CATT-AGA-GTCAAATG----T----TAATTAAAATAATCC--AA--------ATAGTAAAGCACATCTGTCA--TATTCTGTGGG----TGTCCTTTA-T--TTC-ATG-TCGTCAGG--ATATATCAAAGGT-CATAAATTCGGTGAAactgcatgtaa
gi|30 : TTATAACCCTGC-AA--CA-TCAAC--T-GTTTG--------GTTGATACTTTGctttaatcaatg
gi|31 : CAACACATGACT---TA-GTGATAATTTGTAATC
gi|33 : GTCATTATATCGAC-CGTAGAA-TTCG-CGAAAagtaatac
gi|34 : GTAG-TCGA-A-A--TAAA-G---TAAACAGGATTACC
gi|4 : GGTG---AA-A-T-AA-C-GTC-GT--AAATC-AATC-T--AAT-A--AA-TCCTATGAGG----A-----AT---ACAAATTA-TAACA-GTTG--GG-CAAACA-CGGACC-CT--GAGTGGGATCAG----GTGC-CCTGGGTGGGA-TCAG-GT----GCCTAG--GA-----GG-A-GT-AAGCA--TACCC-TGC-CGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCTTTTC-TCTTTA-A--CAA--G---TAAACGGAATAATCCGTACGCTAAATC-AGTATACATATAGAACGGCCCAA--CAATTGGTATGTAA-CCGGTCAAACAACACTTGACC---CA-CAGACAGGTTGTACTGGCAAA--CTAGATCGTTATAATGAC-CATAAAAGTTTG-CGAAATGAT-AC---------------AT--------------C-AA--C---------T-TGTTT--------GTCAGTAGCCT-GCCTC----GAT-TTCAAAA--CTGA-----TCATACGCA-G-AA-CAGGT--T-TTT--GC-ATT-A-T-CGAA-TCAGTTGAGA
gi|5 : agaTA--TGG-ATA---CA-AA-AA--GGCG---AA-G-TTAA-C-ATT-GT--G--TC-AAACGT--AATCA-TAA-TCCAA-AAAA-----C--ATAT---ACAAAATC-GAGT--GTAG--GG--AA-CA-CGGACCTCC--GAC---GA--AA----GTGA-A---GGCAGGA-ACAG-GT----GCCATG--GA-----GG-A-AT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-ACCTGTAG-TCGA-A----TAAA-G---TAAACGAGATTACCCGT-AGTTAAATCTAGTAGAAAAATA--ACAGTCTAA--CAAAGGGTATAGAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTC--TATAGCGAC-CGTAGAA-TTTG-TGAAATGATGACTTTAAACGA-----GATTCGTtaacctcagcatgcgtcatcaatgtgtcaaaaataaaaattaatcgttattaaatat
gi|6 : ttttgtttacctgaggtttgttagatcgagtaaactattttgaagtttctgttcaagaaatgctattaagtgtgttaactaaA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TT-AAACGT--AATCA-TAG-TCCAA-AA------AC--ACAT---ACAATATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GAC---AA--AA----GCAA-A---GGCAGGA-TCAG-GT----GTCATG--GA-----GG-A-GT-AAGCA--TCCAC-TGC-TCA-CC---G-G--TCAC-ACTC-GCC-G-TGA-GCCCTTAG-TCGA-A-A--TAAA-G---TAAAC-GGATTACCCGT-AATCATATCTAGTAGAAAAATG----------A--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACC---TA-GTTATAATTTGTAGTCGCAAA--TAAGATCATTATAGCGAC-CGTGGAA-TTTG-CGTAATGATGACTTTAAACGA-----GATTCGTTATAACCCTGC-AG--CA-TCAAC--T-
gi|7 : gaaacgagcattgtctttacagtggaggattctaaatcttttacgtcattattatcA---TCTAA-AA-TGGCG---AA-GGT-AA-C-AAT-GT--T--TA-GAACGT--AATCAATAG-ACCCA-AACA----AC--ACAT---ACAA--------T--GTAG--GG-CAA-CT-CGGACCTCC---AC---AA--AA----GCGA-A-----CAGGAATCAG-AT----GTCATGAAGA-----GG-AAGT-AAGCA--TCGTCCTGC--GA-CC---GCG--TCACGACTC-GCCCG-TGA-GCC-GTAG-TCGA-A-AAACAAAAG---TAAACGAGGTTACCCGT-CGTCAAATCTAGTACGACAAAA--ACAGTCTGAATCAAAGGGTATGAAGGCAAATCAGTCAACATATGACT---TG-ATGGTAATTTGTAATCGCAAA--CAAAGTCATT-TAGCGAC-CGTAGAA-TTTG-CGAAATGAT-ACTTTGA---
gi|8 : cctacacaacttggtgtttcagtggttgatatggcacggttatgtattagacgttttctttctctctgcAAGGGAGCACAATTAGTGCCC-ATAAG-AATAACAACAAATTGT-T--GGAAAACTTGGTCT------CTAAAGACTACAAAAATATTATCTATTAGAAAACC-CAACAACTGGTATT-CTACATAATACTCCCTACTTCAGA-TAGCTCTTGC-TACGATTCGAAGCGCGTGGCCTCTCGGAATTAGAACAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCTTCTTTGTTCCTCCTCAACGACTTAGAAATTTTCGTATCTTTCGGGGGGACAGTTTTGTGTTTAAAAACTAAGTTATCTATAATCTGGAAAGAAGCGGCTAGATAGTTATCGGTTTA-----TTGT-AAGAATCG-TGTAATAAA-TGTGGAGAAAATCGTGACGTTTTGATGCAATCAATTTt
gi|9 : CCCTGCCAA--CA-ACAAC--T-TGTCT--------GTAAGTAGCTTG-CCTC----GAT-TCAAAAC--TG-A-----TCATACGCA-G-AA-CAAGC--T-CTT--GC-G-T-A-T-CGAA-T-AGTTGAGAGA-C--TA-C-ACACCATATGCAG----GT--GAT-GAT-GGAATATT--GC---T---AC-ATGAAATATGCGAAGTGA--ACGATTGGAGAAGCTGAAATT----CGTTC--CGGTTGT--CAT--AAA-GTTGAGT-AGT---TAG-TTTTGCC-TCGTT-AAT-GTC-AATGTTTTT----CAATTAAAAT-ATCC--AA--------GTA-CGAAGCAGACATGGAAGGGACTCTGT-GGGTTATGTCTCTCACTACTTCAAAGTT--TCGGaggga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CATTTTTTCTTAGGAACACGCATCGATTAATATTTATAATATCTGAATAGAGGTCTTCGTTTTATATTTTATCGATGAAGATGATCGTTAAGTTAATATATCAAGAAATATGTGATGGAAAAGGAAAGATCGAGTACTGTTATTGATGACAGTTCCCAAACTTTTAGAA
Unaligned ( gi|22 ): AAAGCTTTTCACAAATTCTTCCGGGCACGAATAAGAAGCAGGCGGCTTACAACTAGCAACAATTTGTGCTCATAAGAATGCCTGGAGACTGTTGTAAGACCCGATAACAAATACAAATGTTGTCCATAAGGAACCCGAGTATTGCT
Unaligned ( gi|27 ): TAAATCTCATAAAGCCTATAAGGAACACAAATTACGAGTTGGGGAAGCATGAATCCCTGAATA
Unaligned ( gi|29 ): TAAATCCTATAAGGAATACAAATGATAAAAATGGGCAAACATGGATCC
Unaligned ( gi|32 ): TGACAAAATATGTATCTTGTTTCCCAAGAC
Alignments
lowQualScore : 1111111111111111
lowQualScore : 333333333 11 1 111 111 111111 111 11111 1111111111 11111111 1 33333 1111 1111111 1 333333333333333333333333333333 111 1 1111 222222222 11 22222222 11 1111 1111 222 1 11 11 1 1 333 1 7777777777777777777 222 0000000000000000 1 555555555 11 22 1 3333 1 11 666666666666666666666666 222 11 44444444 11 11 1 11 1 1 11 1 11 1 1 33 11 33333333 1 2 2 1 2222 1
lowQualScore : 888888888 1 88 3 111 5 4 111 3 3 3 3 3 44 44 44 33 44 3 3 1 44 444444 44 555 3 3 444 55 55 7 3 3 55 7777 55 8888 111 4 4 9999 66 11111 4 4 4 55 4 4 4 777 4 99 4 4 4 8 4 44 3 3 7777 6 555 0 44 3333333333 1 3 66 1 4 777 4 0 66 3 4 22 4 6 0 1 1 5 66 5 66 5 88888888 1 4 7 9999 0 999999 66666 66 2 4 4 4 1 7777 66 666 8 4 4 2 3 4 4 1111 2 9999 66 4 5 2 5 66 1111111 77 00 1 1 0 77 1 5 0 0 333333333333333333333333333333 6 99 6 111 3 4444 0 6 6 1 0 555555555 1 0 8 11 99999999 8 1 66 11 11 6 4444 0000 0 8 0 888 44 0 33 1 0 33 0 0 555 0 3 7777777777777777777 2 9 22 8 1 8 555 5555555555555555 6 1 7 1 2 555555555 44 00 3 6666 6 3 88 6 333333333333333333333333 6 111 77 55555555 88 88 4 5 77 5 5 88 5 1 88 1 5 1 2 0 00 88 44444444 3 7 3 6 3 0 3 7 1 1 1 1 1 4444 5 1
lowQualScore : ......... . .. . ... . . ... . . . . . .. .. .. .. .. . . . .. ...... .. ... . . ... .. .. . . . .. .... .. .... ... . . .... .. ..... . . . .. . . . ... . .. . . . . . .. . . .... . ... . .. .......... . . .. . . ... . . .. . . .. . . . . . . .. . .. . ........ . . . .... . ...... ..... .. . . . . . .... .. ... . . . . . . . .... . .... .. . . . . .. ....... .. .. . . . .. . . . . .............................. . .. . ... . .... . . . . . ......... . . . .. ........ . . .. .. .. . .... .... . . . ... .. . .. . . .. . . ... . . ................... . . .. . . . ... ................ . . . . . ......... .. .. . .... . . .. . ........................ . ... .. ........ .. .. . . .. . . .. . . .. . . . . . .. .. ........ . . . . . . . . . . . . . .... . .
lowQualScore : 000000000 0 33 3 777 0 4 000 3 3 3 3 3 33 22 22 88 22 1 1 5 22 888888 22 444 1 3 000 00 00 3 6 6 55 5555 55 5555 000 0 0 4444 11 11111 4 4 4 55 0 0 0 000 0 55 0 0 0 0 0 22 3 3 2222 7 888 7 66 6666666666 1 4 11 8 4 000 0 8 99 6 4 44 4 6 3 7 7 0 99 0 99 0 11111111 1 8 8 4444 7 222222 88888 11 9 4 4 4 0 7777 11 666 0 0 0 5 0 4 4 7777 6 4444 11 4 0 2 4 99 0000000 11 66 4 0 1 99 7 7 7 4 777777777777777777777777777777 7 22 7 777 3 2222 7 7 7 0 8 000000000 0 8 0 00 00000000 0 0 66 66 00 7 2222 0000 8 0 8 000 00 0 88 2 2 88 0 0 000 0 2 5555555555555555555 5 8 22 8 2 0 222 2222222222222222 5 0 3 0 0 333333333 00 00 3 7777 7 3 77 7 555555555555555555555555 0 000 55 55555555 55 55 0 5 55 5 5 00 0 0 00 0 0 0 0 7 33 33 33333333 3 3 7 7 7 7 3 3 0 0 0 0 0 5555 5 0
consensus : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTGGCCTC----GATTT--A---AAAA--C-GATC--ATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CGT-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AATACCAACAGATTGT-C-GAAGACNTGGTCNCCAAAGACTACANAAATATTATCTATNAGGAAACCC---AA---GCATTGCT-CTTAATA-TCCN-ACTTCAGAGTA-CTC-TGCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTGAAAA--AGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGTA-TAAAGTGTGGAGAAA-TCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
Reference ( family-406 ) : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTGGCCTC----GATTT--A---AAAA--C--ATC--ATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CNT-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AATACCAACAGATTGT-T--AAGAC-----CACCAAAGACTACANAAATATTATCTATNAGGAAACCCA-CAA---GCATTGCT-CTTAATA-TCTC-ACTTCAGAGTA-CTCGTGCGTA-GATTC-AGG---GTGGTCTCTCGGAACTAGAACAATGGCGTTATNCNTACTCTGTAACAAAATTTATGCTTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTGGAAAGAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGTAATAAAGTGTGGAGAAAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
gi|1 : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACT---------TATGGTGTG--TAG-ATA---TGTAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-GCA-AATAC-GGCT--GTAA--GG-CAA-TA-CGCACCTTC--GGC---GA--AA----GCAA---CGGCACTA-TCAG-CA----GCCAGG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-A-TGA-GCCTGTAG-TCGA-A-A--CAAA-G---TAAACGGGGTTACCAGT-CGTCAAATCTAGTATGAAAATG--ACAGTCTAA--CAAAGGGTAGGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CGAGGTCATTATAGCGA--------ATTTG-CGGAATGGTGACTTTAAA---AATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGT-GTTTGGCTTC----GCTTT--A---AAAA-----ATC--ATACGCA-ATGA-CATGC--C-CTT--GC-G-TAAT-CGAA-TCAACTGAGAGA-C-ATA-C-ACACCATAAGCAG----GT--GAT-AGT-GGTACATT--AC---T---AC-AGAAAA-AAAGAAAGTTG--ACAATTGCA-AAGTCAAA--G---CATCA----CCT-TTAT--CTTTGAAT-GT--AGT-TGT---CAG-TCTC-C--TATT-AGA-GCCAA-TA----T----CAAGTAAAAT-ATCC--AA--------ATA-TGAAGCACATCTGTCA--GATTCTGT-GG----TGTCCTTTATT--TTC-AAGTTCGTCAGGATATATATCAAATGGACAT-AATT--GTGAAAATTATGAATGTTAATTAATAAGACATCGTCT--ATAT-ACCTA-TAAGTAAGGTTGAAGGACACGGCAAG---TTTTT-T-GTT-------------------TTTATCCCGTAATAGTTTCTGAACAAATTCTGCTTCGTGTGAATTTAAAATTAAGTCTGCCAATAAGGGGGCGCAATTAGTGCCCGATA-G-AATACCAACAGATTGT---------------AC-AAAGACTACATAAATAT-ATCTATAAG-AAACC----AA---GCAT-GCT-CTTAATA-TCTT--CTTCAGAGTA-CT--TGTGT------------------------GGAATCAGAG---TGG--TT--------TCTG--ACAAAAT--ATGTATCTT-GTT--TCC-CAATGAC-CAGAAACTT--GTAT-TTTCGGGTG--CCGTTTT-TGTTCAAAAAGCAA-TTATCAGTTATCTGAAAA--AGC--CTAGATTTTAATT--T-T-G-TG-AGGAATTGTTGTA-TAAAGTGTGGAGAAA-TTAT-ACGTTT-GATGCAGTCAATTTTAGAAAAATCTAGTGACTTGAAGTTTTCTATAAGCTCT----TTAGAGTTTTTGAGAATCCACATC-GATTGACACCACTTATGGAATATGTAGT
gi|10 : AAACGTGACT-GTTGAACCCCTGC-AAATCACTCAACGTTGTTCTGTCCAAAACGTCCGTAGTTTG-CCTCCCGAGATATCAA---AAAA--CTGATC--ATAT-CA-G-AAACAAGTTTC-TTC--GT-G-TAAT-TGAAATAAGTTGAGA-A-C-ATA-CCACACCATATGCAGTGAGGTTGGAA-AAT-GCTA-ATTTAGCAAAT---AT-GGAGAA-AAAGAA--TTG--AC-AGTGCA-AG--CGAAA-TGAACATCAATCCCGTGTTTT--TA---AAT-TT--GGA-TGTATTCAGATTTGAC--CGTTTAGATGCCAAATG----TGATACATATATAAT-ATCCCCAATTCCGCCTATG-CGAAG--GATG---GA--GACTCTGT-GG----TGTCGTTTATT--Tggaacagtgcatagaggtaaccgccatatcaacaagtaaagaaggaaggttaaaccgttgattcttatcagaaattgtcatcgtcaaacataaacacagataacagacagattcatgagggaaatatacttcaaagtttaaacaaaaataagag
gi|11 : ttttaaAGTCATCGTAG--ATAT-ATCGAGTATGTCGAATTAAAGGCTACCACTAGAGATTTCC-CTCTT-------------------CTCAT---GTAGAAGCTTTTGAATGAATTCTGCTTCGTAAGAATATAAAAACGGACCAGCTAACAAAGGAGCACAGTTCGTGCCC-ATG-GAAATTCCAGCGGACTGT-TTGAAGACCTGATCACCAAAAACTACAAAGATATTGTCAATGAGGAACTCC----A---GCATTGCT--TTAACA-TC-A-ACTTCAGAGTA-CTTGTGCGTA-GATTC-AGG---GTGGTc
gi|12 : ttagacagcatgttacccaatggcagaccatactggcaaactaaatcgttTAATAG-TAGCG---AA-G-T-AA-C-AAA-GT--A--TCCAAACGT--A-TCA-TAGCTCCAC--AAA----------CA---T-ACA-AAAT--GAGT--GTAGAAGGTCAA-CA-CGGACCTTC--GAG---GA--AA----GCGAC--AGACAGGT-ACAG-GT----GTCAGT--GATTACGGG-A-GTCAAGCA----CTC-TGC-TGACCC---G-G--TCAC-ACCCGGCC-G-TGA-TCAC-TGGCTCGA-AGA--CAAA-AGTTTAAACAGggtcatcagaa
gi|13 : gaaaatttagttagtgcgtttttaaaaactattctctaaatttttT-GG----TGTTCTTTATT--T-C-GAGTTCGTCGG-A-ATGTATTAAATGCACTT-AATT--ATGAAAATTATCATTGTTAAGTGATAAGGCATCATCTGCATATTATCTA-TATGTAAGGTTGAAGAACACGACAAG---TTTTTCTTGTT-------------------TTTATCCCGTAA--GTTTTTGAAAAAATT-TGCTTCGTATCGATATTAAAATAAGTCTGCTAATAAGGGGGCACAATTAGTGCCC-ATACA-AATACCAACAGATTGTAC--AAGACATGGTCTCCAAAGACTACATAAATaggagatttactcctctaatcccttaacaaatact
gi|14 : ATAA-AACTGGCGCGTAATG-T-AAAC-AAT-GCTGA--TC-AATTGTTAAATCA-TAG-TCCCC--AAAA-----C--ATA---A-ACA-AAATCAGAGTCTGTAG--TGTCAA-CAACGGACCTCCCCGAC---AA--AACGTAGCGA---AGG-AGGA-TCAGCGTCCTCGCTATG--AA-----GGGA-GT-ACACAATTTCTC-TGCCTGA-TCTGCG-GC-TCAC-ACCC-GCC-GTTAA-GCCC-TAG-TC-A-A-T--TAAATG---TAAACgctt
gi|15 : agacta--------GTCAGTAACCTG-TCTC----GATTT--G---AAAA--A--AAA--ATACACA-G-AA-CAATA--T-TTTATGC-G-TA-T-C-AA-TCGGTTGACGGA-C-AT--------------CAG----GC--GAT-AAT-GG---ATT--GC---TGCCAC-GTAAAT-ATGGGAAGCTG--ATGATGGAG-ACGCCGAA--T---CAATA----TTT-TT
gi|16 : aattCA--TCCCT-AAT-TGA-CC---G-GGTCCAT-ATC--GCC-GGTGACGCCTATAC-TTGA-A-C--CAG--G---TACACACAATAATCTGT-AGTTAAAATCAATATATCAA-G--A-AGCC-AA--CAACTGATA-GCAA-CACGTC---TAACAT-TGACC---CA-AT-ATATGTTGTA-TTGCAAAACCAA--TCGCTGTAACGACACG---AATTTGGCGAAATGAtgttgcaaattttagtaggtgaattgctccaaaaggtaacgcctacatgtatgttcaataaattaacc
gi|17 : agcAATTATCTATAATCTGAAAA--AGC--CTAGAATTCAATC--TCTAG-TG-AAGAATCGTTGTA-TAAAGTGTGGAGAAA-TCAT-ACGTTTTGATGCAGTCAATTTTAGAAAATTCTCGTGATTTTAGGTTATCCAAAAGCTCTTTAATTAGAATTTTTAAGAATCCACATCTGATTGACACCACTTCTAGAATATGTAGTaaatcgac
gi|18 : TAGCCTG--CTC----GGTTA--AGAAAAAA--C--TTTTAATACGCA-G-AT-CACGT--CTCTT--CC-A-TA-T-CGAA-TAAG-TGGGAGA-CAATGTT-ACACTATATGCAG----AT--AATCAATGGGCATATT--G
gi|2 : ttgtaagttA-TGGCG---AA-G-T-GA-C-AAT-GT--A--TT-GAATGT--AATAA-GAG-TCCCA--AAAA-----C--GCA---T-ACA-AAATC-AAGT--GTAG--GG-CAA-CA-CAGCCCTCT--GAC---AA--AA----GCGA---AGGCAGGG-TCAG-GT----GCCATG--GA-----AG-T-GT-AAGCA--TCCTA-TGC-TGA-CC---G-G--TCTC-AAAC-GCC-G-TGA-GCCCGTAG-TCAA-A-A--TAAA-G---TTAACGTTGTTGTCAGC-TTTCAAATCCAGTACGGAAATG--ACAGTCTAA--C-AAGGATATGAAA-CAAATAAGTCAACACATGACT---TA-GTGATCATTTGTAATCGTAAA--CATGTTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTTAATGGGATCTGTTATAACCCTGC-AC--CA-TCCAC--T-TTTTG--------GATAATAG-TTGGCCTC----ACTTT--A---AAAAATC--ATC--ATACTCA-T-GA-CATGC--C-CTT--GT-C-TT-TGCG-A-TCAACTAAGAGG-C-ATA-C-ACACCATAAGCAT----GT--GAT-AGT-GGTGCATT--AC---T---AT-ATAGAATATGGAGAATTG--ATGATTGCT-AAGTCT-G--C---CA-----------------TAT--AAT-GT--AGC-TGT---CAG-TCTG-C--CAAT-AGA-GT-AAATA----T----TAAGT-AAAT-ATCA--AA--------ATA-TGAAACATATTGGTTA--GGTTCTGT-GG----TGTCCTATA-T--TTC-GAGTTCGTCGGG--ATATACCAAATGTACAT-AATT--GTGAAAAGTATGATTGGTAATTGATAAGACATCGTTT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAGTTTTTTTT-TTGTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGCAATAGTTTTTTTACAAAATATGCATCGTTTGAATACAAAAATAAATTTGCCAATAAGGGGGCACAATTAGTGCCC-ATG-GTAATATCAACAGATTGT-gtctcatgaatacggcggagtgcttgagcgatgtgaaggctaaaggtccataacggtggtagtta
gi|20 : ct-TA-T-CGAA-TAAACTGGAAAA-T-AT--C-ACACAGTAAGCAG----GC--GAT-TAT-G-TATATT--GC---T---ACCATAGAA-AGAGAAAGTTC--ACGATTGCA-AGTTCAAG--T---TACCACG--CTT-TCATA-TAC--AAT-GC--AAT-TGT---TAC-CCTA-C--CATT-AGA-GTTAA
gi|21 : cactttaaataaaattaagatgatA-A-T-AA-C-AAG-GT--A--TT-AAACGT--AGTCA-TAG-TCCCA--AAAA----AT--ACA---C-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---AA--AA----GTGA---AGGTAGGA-TCAG-tc
gi|23 : agcattcatatttcttacattgtataaggataatgttttatcttctttttatctatacCAAATGCATTATAATTTGAATGGTATACCTTATAA-AT-TGGCG---AA-G-T-AA-AGAAT-GT--G--TT-CAACGT--AATCA-TAG-TCCGG--AAAA----AT--ATA---C-ACA-AAGGC-GAGT--GGAG--GG-AAA-CA-C
gi|24 : gCCGTAG-TCGA-A-A--CAAA-A---TAAACGGGTTTACTCTT-CATCAAATCTAGTACG--AAT------GTCTAA--CAGAGGGTATGACA-TAACTCAGTCAACATATGACT---TA-GTGAT
gi|25 : GTAGCTTA-CCTC----GATTT--A---AAAA--TCGATC--ATACCTA-G-AA-CAAGC--T-TTT--CCTG-CA-T-CGAA-TCAGTTGAGAAA-C-ATT-T-ACCATATATGCGA----GT--GAT-
gi|26 : A---TATAA-AA-TGGCTT--AA-G-T----C-AATAGT--A--T---AACGT--AATCT-GAG-TCCAA---AAA----AC--ATA---TAACACAAATg
gi|28 : tcattatgactttcc-G-T-AA-C-AAA-GT--A--TC-AAGCGT--AACCA-TAG-TCCAA--AAA-----AC--ATG---T-Aataacaatataaac
gi|3 : --A--TC-AAACGT--AATCA-TAG-TCCAA--AAAATACAACCCACA---T-TCA-AAATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GA---------------------AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGC---------TGC-TAA-CC---G-G--GCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--TAAA-G---TAAACGGGATTACCCGT-CGTAAAATCTAGT------------------------------ATGAAA----ATCAGTCAACATATGACTAATTATATAATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAAGAATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGTAG-TTGGCCTC----GCTTT--A---AAAAATC--ATC--ATAAGCATG-GA--ATGC--C-CTT--GC-A-TA-T-CGAA-TCAAATAAGAGATC-ACA-C-ACACCATAAGCAA----GT--GAT-AGT-CGTACATT--GC---T---AC-AT--AA-AAGAAAAG-TGACACAATTGCA-AAGTCAAG--T---CATCA----CGT-TTATTATAT--AATGGT--AGTCTGT---CAG-TCTG----CATT-AGA-GTCAAATG----T----TAATTAAAATAATCC--AA--------ATAGTAAAGCACATCTGTCA--TATTCTGTGGG----TGTCCTTTA-T--TTC-ATG-TCGTCAGG--ATATATCAAAGGT-CATAAATTCGGTGAAactgcatgtaa
gi|30 : TTATAACCCTGC-AA--CA-TCAAC--T-GTTTG--------GTTGATACTTTGctttaatcaatg
gi|31 : CAACACATGACT---TA-GTGATAATTTGTAATC
gi|33 : GTCATTATATCGAC-CGTAGAATTCG-CGAAAagtaatac
gi|34 : GTAG-TCGA-A-A--TAAA-G---TAAACAGGATTACC
gi|4 : GGTG---AA-A-T-AA-C-GTC-GT--AAATC-AATC-T--AAT-A--AA-TCCTATGAGGA----AT--ACAAATT-ATA-ACA---------GTTG--GG-CAAACA-CGGACC-CT--GAGTGGGATCAG----GTGCCCTGGGTGGGA-TCAG-GT----GCCTAG--GA-----GG-A-GT-AAGCA--TACCC-TGC-CGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCTTTTC-TCTTTA-A--CAA--G---TAAACGGAATAATCCGTACGCTAAATC-AGTATACATATAGAACGGCCCAA--CAATTGGTATGTAA-CCGGTCAAACAACACTTGACC---CA-CAGACAGGTTGTACTGGCAAA--CTAGATCGTT-------------------------ATAATGACCATAAA--AG-TTTGCGA-AA---TGA-TA--CA-TCAAC--T-TGTTT--------GTCAGTAGCCT-GCCTC----GATTT--C---AAAA--CTGATC--ATACGCA-G-AA-CAGGT--T-TTT--GC-ATTA-T-CGAA-TCAGTTGAGA
gi|5 : agaTA--TGG-ATA---CA-AA-AA--GGCG---AA-G-TTAA-C-ATT-GT--G--TC-AAACGT--AATCA-TAA-TCCAA--AAAA-----C--ATA---T-ACA-AAATC-GAGT--GTAG--GG--AA-CA-CGGACCTCC--GAC---GA--AA----GTGA---AGGCAGGA-ACAG-GT----GCCATG--GA-----GG-A-AT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-ACCTGTAG-TCGA-A----TAAA-G---TAAACGAGATTACCCGT-AGTTAAATCTAGTAGAAAAATA--ACAGTCTAA--CAAAGGGTATAGAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTC--TATAGCGAC-CGTAGAATTTG-TGAAATGATGACTTTAAACGAGATTCGTtaacctcagcatgcgtcatcaatgtgtcaaaaataaaaattaatcgttattaaatat
gi|6 : ttttgtttacctgaggtttgttagatcgagtaaactattttgaagtttctgttcaagaaatgctattaagtgtgttaactaaA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TT-AAACGT--AATCA-TAG-TCCAA--AAA------C--ACA---T-ACA-ATATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GAC---AA--AA----GCAA---AGGCAGGA-TCAG-GT----GTCATG--GA-----GG-A-GT-AAGCA--TCCAC-TGC-TCA-CC---G-G--TCAC-ACTC-GCC-G-TGA-GCCCTTAG-TCGA-A-A--TAAA-G---TAAACGG-ATTACCCGT-AATCATATCTAGTAGAAAAATG--ACA----------AAGGGTATGAAA-CAAATCAGTCAACATATGACC---TA-GTTATAATTTGTAGTCGCAAA--TAAGATCATTATAGCGAC-CGTGGAATTTG-CGTAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AG--CA-TCAAC--T-
gi|7 : gaaacgagcattgtctttacagtggaggattctaaatcttttacgtcattattatcA---TCTAA-AA-TGGCG---AA-GGT-AA-C-AAT-GT--T--TA-GAACGT--AATCAATAG-ACCCA--AACA----AC--ACA---T-ACA-A--------T--GTAG--GG-CAA-CT-CGGACCTCC---AC---AA--AA----GCGA---A--CAGGAATCAG-AT----GTCATGAAGA-----GG-AAGT-AAGCA--TCGTCCTGC--GA-CC---GCG--TCACGACTC-GCCCG-TGA-GCC-GTAG-TCGA-A-AAACAAAAG---TAAACGAGGTTACCCGT-CGTCAAATCTAGTACGACAAAA--ACAGTCTGAATCAAAGGGTATGAAGGCAAATCAGTCAACATATGACT---TG-ATGGTAATTTGTAATCGCAAA--CAAAGTCATT-TAGCGAC-CGTAGAATTTG-CGAAATGAT-ACTTTGA
gi|8 : cctacacaacttggtgtttcagtggttgatatggcacggttatgtattagacgttttctttctctctgcAAGGGAGCACAATTAGTGCCC-ATAAG-AATAACAACAAATTGT-TGGAAAACTTGGTCTCTAAAGACTACAAAAATATTATCTATTAGAAAACCCAACAACTGGTATT-CTACATAATACTCCCTACTTCAGA-TAGCTCTTGC-TACGATTCGAAGCGCGTGGCCTCTCGGAATTAGAACAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCTTCTTTGTTCCTCCTCAACGACTTAGAAATTTTCGTATCTTTCGGGGGGACAGTTTTGTGTTTAAAAACTAAGTTATCTATAATCTGGAAAGAAGCGGCTAGATAGTTATCGGTTT-ATTGTAAGAATCG-TGTAATAAA-TGTGGAGAAAATCGTGACGTTTTGATGCAATCAATTTt
gi|9 : CCCTGCCAA--CA-ACAAC--T-TGTCT--------GTAAGTAGCTTG-CCTC----GATTC--A---AAA---CTGATC--ATACGCA-G-AA-CAAGC--T-CTT--GC-G-TA-T-CGAA-T-AGTTGAGAGA-C--TA-C-ACACCATATGCAG----GT--GAT-GAT-GGAATATT--GC---T---AC-ATGAAATATGCGAAGTGA--ACGATTGGAGAAGCTGAAATT---CGTTC----CGG-TTGT--CAT--AAA-GTTGAGT-AGT---TAGTTTTG-CCTCGTT-AAT-GTC-AATGTTTTT----CAATTAAAAT-ATCC--AA--------GTA-CGAAGCAGACATGGAAGGGACTCTGT-GGGTTATGTCTCTCACTACTTCAAAGTT--TCGGaggga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CATTTTTTCTTAGGAACACGCATCGATTAATATTTATAATATCTGAATAGAGGTCTTCGTTTTATATTTTATCGATGAAGATGATCGTTAAGTTAATATATCAAGAAATATGTGATGGAAAAGGAAAGATCGAGTACTGTTATTGATGACAGTTCCCAAACTTTTAGAA
Unaligned ( gi|22 ): AAAGCTTTTCACAAATTCTTCCGGGCACGAATAAGAAGCAGGCGGCTTACAACTAGCAACAATTTGTGCTCATAAGAATGCCTGGAGACTGTTGTAAGACCCGATAACAAATACAAATGTTGTCCATAAGGAACCCGAGTATTGCT
Unaligned ( gi|27 ): TAAATCTCATAAAGCCTATAAGGAACACAAATTACGAGTTGGGGAAGCATGAATCCCTGAATA
Unaligned ( gi|29 ): TAAATCCTATAAGGAATACAAATGATAAAAATGGGCAAACATGGATCC
Unaligned ( gi|32 ): TGACAAAATATGTATCTTGTTTCCCAAGAC
Alignments
lowQualScore : 333333333 11 1 111 111 111111 111 11111 1111111111 11111111 2 3333333333 1111 1111111 1 33333333333333333333333333333333 111 1 1111 222222222 11 22222222 11 1111 1111 222 1 11 11 1 1 333 1 7777777777777777777 111 3333 1 11 3333333333 222222 1 77777777777777777777777777777777 222 33333333 11 11 11 1 11 1 1 11 1 11 1 1 11 11 33333333 1 1 1 1 2222 1
lowQualScore : 888888888 1 88 3 111 5 4 111 3 3 3 3 3 44 44 44 33 44 3 3 1 44 444444 44 555 3 3 444 55 55 7 3 3 55 7777 55 8888 111 4 4 9999 66 11111 4 4 4 55 4 4 4 777 4 99 4 4 4 8 4 44 3 3 7777 6 555 0 44 3333333333 1 3 66 4 4 777 4 0 66 3 4 22 4 6 0 1 1 5 66 5 66 5 88888888 1 4 3 9999 0 66 6666666666 2 4 4 4 1 7777 66 666 8 4 4 2 3 4 4 1111 2 9999 66 4 5 2 5 66 1111111 77 00 1 1 0 77 1 5 0 0 11111111111111111111111111111111 6 99 6 111 3 4444 0 6 6 1 0 555555555 1 0 8 11 99999999 8 1 66 11 11 6 4444 0000 0 8 0 888 44 0 33 1 0 33 0 0 555 0 3 7777777777777777777 2 9 22 8 1 8 777 8 9999 0 0 0 4 0 1 7 1 0 99 7 7 0000000000 888888 6 3 44444444444444444444444444444444 111 55555555 88 88 88 1 5 77 5 5 88 5 1 88 1 5 1 2 88 88 44444444 3 7 3 6 3 0 3 7 1 1 1 1 1 4444 5 1
lowQualScore : ......... . .. . ... . . ... . . . . . .. .. .. .. .. . . . .. ...... .. ... . . ... .. .. . . . .. .... .. .... ... . . .... .. ..... . . . .. . . . ... . .. . . . . . .. . . .... . ... . .. .......... . . .. . . ... . . .. . . .. . . . . . . .. . .. . ........ . . . .... . .. .......... . . . . . .... .. ... . . . . . . . .... . .... .. . . . . .. ....... .. .. . . . .. . . . . ................................ . .. . ... . .... . . . . . ......... . . . .. ........ . . .. .. .. . .... .... . . . ... .. . .. . . .. . . ... . . ................... . . .. . . . ... . .... . . . . . . . . . .. . . .......... ...... . . ................................ ... ........ .. .. .. . . .. . . .. . . .. . . . . .. .. ........ . . . . . . . . . . . . . .... . .
lowQualScore : 000000000 0 33 3 777 0 4 000 3 3 3 3 3 33 22 22 88 22 1 1 5 22 888888 22 444 1 3 000 00 00 3 6 6 55 5555 55 5555 000 0 0 4444 11 11111 4 4 4 55 0 0 0 000 0 55 0 0 0 0 0 22 3 3 2222 7 888 7 66 6666666666 1 4 11 7 4 000 0 8 99 6 4 44 4 6 3 7 7 0 99 0 99 0 11111111 1 8 3 4444 7 11 3333333333 9 4 4 4 0 7777 11 666 0 0 0 5 0 4 4 7777 6 4444 11 4 0 2 4 99 0000000 11 66 4 0 1 99 7 7 7 4 99999999999999999999999999999999 7 22 7 777 3 2222 7 7 7 0 8 000000000 0 8 0 00 00000000 0 0 66 66 00 7 2222 0000 8 0 8 000 00 0 88 2 2 88 0 0 000 0 2 5555555555555555555 5 8 22 8 2 0 222 0 2222 2 8 2 5 2 0 3 0 7 00 3 3 7777777777 777777 7 3 77777777777777777777777777777777 000 00000000 00 55 55 0 5 55 5 5 00 0 0 00 0 0 0 0 33 33 33333333 3 3 3 7 3 7 3 3 0 0 0 0 0 5555 5 0
consensus : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTG-CCTC----GATTT--AAAAA--C-GA----TCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AA-TACCAACAGATTGTT-G-AAGACNTGGTCTCCAAAGACTACANAAATATTATCTATNAGAAA-CCCAAGCATTG---CTCT---TAATAT--CCTACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
Reference ( family-406 ) : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTGGCCTC----GATTT--AAAAA--C-GA----TCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AA-TACCAACAGATTGTC-G-AAGACNTGGTCNCCAAAGACTACANAAATATTATCTATNAGGAAACCCAAGCATTG---CTCT---TAATAT--CCNACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
gi|1 : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACT---------TATGGTGTG--TAG-ATA---TGTAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-GCA-AATAC-GGCT--GTAA--GG-CAA-TA-CGCACCTTC--GGC---GA--AA----GCAA---CGGCACTA-TCAG-CA----GCCAGG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-A-TGA-GCCTGTAG-TCGA-A-A--CAAA-G---TAAACGGGGTTACCAGT-CGTCAAATCTAGTATGAAAATG--ACAGTCTAA--CAAAGGGTAGGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CGAGGTCATTATAGCGA--------ATTTG-CGGAATGGTGACTTTAAA---AATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGT-GTTTGGCTTC----GCTTT--AAAAA-----A----TCATACGCA-ATGA-CATGC--C-CTT--GC-G-TAAT-CGAA-TCAACTGAGAGA-C-ATA-C-ACACCATAAGCAG----GT--GAT-AGT-GGTACATT--AC---T---AC-AGAAAA-AAAGAAAGTTG--ACAATTGCA-AAGTCAAA--G---CATCA----CC--T-TTAT--CTTTGAAT-GT--AGT-TGT---CAG-TCTC-C--TATT-AGA-GCCAA-TA----T----CAAGTAAAAT-ATCC--AA--------ATA-TGAAGCACATCTGTCA--GATTCTGT-GG----TGTCCTTTATT--TTC-AAGTTCGTCAGGATATATATCAAATGGACAT-AATT--GTGAAAATTATGAATGTTAATTAATAAGACATCGTCT--ATAT-ACCTA-TAAGTAAGGTTGAAGGACACGGCAAG---TTTTT-T-GTT-------------------TTTATCCCGTAATAGTTTCTGAACAAATTCTGCTTCGTGTGAATTTAAAATTAAGTCTGCCAATAAGGGGGCGCAATTAGTGCCCGATA-G-AA-TACCAACAGATTGT-------AC---------AAAGACTACATAAATAT-ATCTATAAGAAA--CCAAGCAT-G---CTCT---TAATAT--CTT-CTTCAGAGTA-CT--T-GTGT------------------------GGAATCAGAG---TGG--------TT--TCTG--ACAAAAT--ATGTATCTT-GTT--TCC-CAATGAC-CAGAAACTT--GTAT-TTTCGGGTG--CCGTTTT-TGTTCAAAAAGCAA-TTATCAGTTATCTG--AAAAAGC--CTAGATTTTAATT--T-T-G-TG-AGGAATTGTTGT-ATAAAGTGTGGAG-AAATTAT-ACGTTT-GATGCAGTCAATTTTAGAAAAATCTAGTGACTTGAAGTTTTCTATAAGCTCT----TTAGAGTTTTTGAGAATCCACATC-GATTGACACCACTTATGGAATATGTAGT
gi|10 : AAACGTGACT-GTTGAACCCCTGC-AAATCACTCAACGTTGTTCTGTCCAAAACGTCCGTAGTTTG-CCTCCCGAGATATCAAAAAA--CTGA----TCATAT-CA-G-AAACAAGTTTC-TTC--GT-G-TAAT-TGAAATAAGTTGAGA-A-C-ATA-CCACACCATATGCAGTGAGGTTGGAA-AAT-GCTA-ATTTAGCAAAT---AT-GGAGAA-AAAGAA--TTG--AC-AGTGCA-AG--CGAAA-TGAACATCAATCCCG--TGTTTT--TA---AAT-TT--GGA-TGTATTCAGATTTGAC--CGTTTAGATGCCAAATG----TGATACATATATAAT-ATCCCCAATTCCGCCTATG-CGAAG--GATG---GA--GACTCTGT-GG----TGTCGTTTATT--Tggaacagtgcatagaggtaaccgccatatcaacaagtaaagaaggaaggttaaaccgttgattcttatcagaaattgtcatcgtcaaacataaacacagataacagacagattcatgagggaaatatacttcaaagtttaaacaaaaataagag
gi|11 : ttttaaAGTCATCGTAG--ATAT-ATCGAGTATGTCGAATTAAAGGCTACCACTAGAGATTTCC-CTCTT-------------------CTCAT---GTAGAAGCTTTTGAATGAATTCTGCTTCGTAAGAATATAAAAACGGACCAGCTAACAAAGGAGCACAGTTCGTGCCC-ATG-G-AAATTCCAGCGGACTGTTTG-AAGACCTGATCACCAAAAACTACAAAGATATTGTCAATGAGGAACTCCA-GCATTG---CT-T---TAACAT--C-AACTTCAGAGTA-CTTGT-GCGTA-GATTC-AGG---GTGGc
gi|12 : ttagacagcatgttacccaatggcagaccatactggcaaactaaatcgttTAATAG-TAGCG---AA-G-T-AA-C-AAA-GT--A--TCCAAACGT--A-TCA-TAGCTCCAC--AAA----------CA---T-ACA-AAAT--GAGT--GTAGAAGGTCAA-CA-CGGACCTTC--GAG---GA--AA----GCGAC--AGACAGGT-ACAG-GT----GTCAGT--GATTACGGG-A-GTCAAGCA----CTC-TGC-TGACCC---G-G--TCAC-ACCCGGCC-G-TGA-TCAC-TGGCTCGA-AGA--CAAA-AGTTTAAACAGtggtcatcagaa
gi|13 : gaaaatttagttagtgcgtttttaaaaactattctctaaatttttT-GG----TGTTCTTTATT--T-C-GAGTTCGTCGG-A-ATGTATTAAATGCACTT-AATT--ATGAAAATTATCATTGTTAAGTGATAAGGCATCATCTGCATATTATCTA-TATGTAAGGTTGAAGAACACGACAAG---TTTTTCTTGTT-------------------TTTATCCCGTAA--GTTTTTGAAAAAATT-TGCTTCGTATCGATATTAAAATAAGTCTGCTAATAAGGGGGCACAATTAGTGCCC-ATACA-AA-TACCAACAGATTGTA-C-AAGACATGGTCTCCAAAGACTACATAAATaggagatttactcctctaatcccttaacaaatact
gi|14 : ATAA-AACTGGCGCGTAATG-T-AAAC-AAT-GCTGA--TC-AATTGTTAAATCA-TAG-TCCCC--AAAA-----C--ATA---A-ACA-AAATCAGAGTCTGTAG--TGTCAA-CAACGGACCTCCCCGAC---AA--AACGTAGCGA---AGG-AGGA-TCAGCGTCCTCGCTATG--AA-----GGGA-GT-ACACAATTTCTC-TGCCTGA-TCTGCG-GC-TCAC-ACCC-GCC-GTTAA-GCCC-TAG-TC-A-A-T--TAAATG---TAAACgctt
gi|15 : agacta--------GTCAGTAACCTG-TCTC----GATTT--GAAAA--A-AA-----AATACACA-G-AA-CAATA--T-TTTATGC-G-TA-T-C-AA-TCGGTTGACGGA-C-AT--------------CAG----GC--GAT-AAT-GG---ATT--GC---TGCCAC-GTAAAT-ATGGGAAGCTG--ATGATGGAG-ACGCCGAA--T---CA
gi|16 : aattCA--TCCCT-AAT-TGA-CC---G-GGTCCAT-ATC--GCC-GGTGACGCCTATAC-TTGA-A-C--CAG--G---TACACACAATAATCTGT-AGTTAAAATCAATATATCAA-G--A-AGCC-AA--CAACTGATA-GCAA-CACGTC---TAACAT-TGACC---CA-AT-ATATGTTGTA-TTGCAAAACCAA--TCGCTGTAACGACACG---AATTTGGCGAAATGAatattttttgttgcaaattttagtaggtgaattgctccaaaaggtaacgcctacatgtatgttcaataaattaacc
gi|17 : agcAATTATCTATAATCTG--AAAAAGC--CTAGAATTCAATC--TCTAG-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCAT-ACGTTTTGATGCAGTCAATTTTAGAAAATTCTCGTGATTTTAGGTTATCCAAAAGCTCTTTAATTAGAATTTTTAAGAATCCACATCTGATTGACACCACTTCTAGAATATGTAGTaaatcgac
gi|18 : TAGCCTG--CTC----GGTTA--AGAAA--A-AACTTTTAATACGCA-G-AT-CACGT--CTCTT--CC-A-TA-T-CGAA-TAAG-TGGGAGA-CAATGTT-ACACTATATGCAG----AT--AATCAATGGGCATATT--G
gi|2 : ttgtaagttA-TGGCG---AA-G-T-GA-C-AAT-GT--A--TT-GAATGT--AATAA-GAG-TCCCA--AAAA-----C--GCA---T-ACA-AAATC-AAGT--GTAG--GG-CAA-CA-CAGCCCTCT--GAC---AA--AA----GCGA---AGGCAGGG-TCAG-GT----GCCATG--GA-----AG-T-GT-AAGCA--TCCTA-TGC-TGA-CC---G-G--TCTC-AAAC-GCC-G-TGA-GCCCGTAG-TCAA-A-A--TAAA-G---TTAACGTTGTTGTCAGC-TTTCAAATCCAGTACGGAAATG--ACAGTCTAA--CAA-GGATATGAAA-CAAATAAGTCAACACATGACT---TA-GTGATCATTTGTAATCGTAAA--CATGTTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTTAATGGGATCTGTTATAACCCTGC-AC--CA-TCCAC--T-TTTTG--------GATAATAG-TTGGCCTC----ACTTT--AAAAAATC--A----TCATACTCA-T-GA-CATGC--C-CTT--GT-C-TT-TGCG-A-TCAACTAAGAGG-C-ATA-C-ACACCATAAGCAT----GT--GAT-AGT-GGTGCATT--AC---T---AT-ATAGAATATGGAGAATTG--ATGATTGCT-AAGTCT-G--C---CA-------------------TAT--AAT-GT--AGC-TGT---CAG-TCTG-C--CAAT-AGA-GT-AAATA----T----TAAGT-AAAT-ATCA--AA--------ATA-TGAAACATATTGGTTA--GGTTCTGT-GG----TGTCCTATA-T--TTC-GAGTTCGTCGGG--ATATACCAAATGTACAT-AATT--GTGAAAAGTATGATTGGTAATTGATAAGACATCGTTT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAGTTTTTTTT-TTGTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGCAATAGTTTTTTTACAAAATATGCATCGTTTGAATACAAAAATAAATTTGCCAATAAGGGGGCACAATTAGTGCCC-ATG-GTAA-TATCAACAGATTGTgtctcatgaatacggcggagtgcttgagcgatgtgaaggctaaaggtccataacggtggtagtta
gi|20 : ct-TA-T-CGAA-TAAACTGGAAAA-T-AT--C-ACACAGTAAGCAG----GC--GAT-TAT-G-TATATT--GC---T---ACCATAGAA-AGAGAAAGTTC--ACGATTGCA-AGTTCAAG--T---TACCA----CGCTT-TCATA-TAC--AAT-GC--AAT-TGT---TAC-CCTA-C--CATT-AGA-GTTAA
gi|21 : cactttaaataaaattaagatgatA-A-T-AA-C-AAG-GT--A--TT-AAACGT--AGTCA-TAG-TCCCA--AAAA----AT--ACA---C-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---AA--AA----GTGA---AGGTAGGA-TCAG-tc
gi|23 : agcattcatatttcttacattgtataaggataatgttttatcttctttttatctatacCAAATGCATTATAATTTGAATGGTATACCTTATAA-AT-TGGCG---AA-G-T-AA-AGAAT-GT--G--TT-CAACGT--AATCA-TAG-TCCGG--AAAA----AT--ATA---C-ACA-AAGGC-GAGT--GGAG--GG-AAA-CA-C
gi|24 : gCCGTAG-TCGA-A-A--CAAA-A---TAAACGGGTTTACTCTT-CATCAAATCTAGTACG--AAT------GTCTAA--CAGAGGGTATGACA-TAACTCAGTCAACATATGACT---TA-GTGAT
gi|25 : GTAGCTTA-CCTC----GATTT--AAAAAT-C-GA----TCATACCTA-G-AA-CAAGC--T-TTT--CCTG-CA-T-CGAA-TCAGTTGAGAAA-C-ATT-T-ACCATATATGCGA----GT--GAT-
gi|26 : A---TATAA-AA-TGGCTT--AA-G-T----C-AATAGT--A--T---AACGT--AATCT-GAG-TCCAA---AAA----AC--ATA---TAACACAAATg
gi|28 : tcattatgactttcc-G-T-AA-C-AAA-GT--A--TC-AAGCGT--AACCA-TAG-TCCAA--AAA-----AC--ATG---T-Aataacaatataaac
gi|3 : --A--TC-AAACGT--AATCA-TAG-TCCAA--AAAATACAACCCACA---T-TCA-AAATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GA---------------------AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGC---------TGC-TAA-CC---G-G--GCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--TAAA-G---TAAACGGGATTACCCGT-CGTAAAATCTAGT------------------------------ATGAAA----ATCAGTCAACATATGACTAATTATATAATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAAGAATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGTAG-TTGGCCTC----GCTTT--AAAAAATC--A----TCATAAGCATG-GA--ATGC--C-CTT--GC-A-TA-T-CGAA-TCAAATAAGAGATC-ACA-C-ACACCATAAGCAA----GT--GAT-AGT-CGTACATT--GC---T---AC-AT--AA-AAGAAAAG-TGACACAATTGCA-AAGTCAAG--T---CATCA----CG--T-TTATTATAT--AATGGT--AGTCTGT---CAG-TCTG----CATT-AGA-GTCAAATG----T----TAATTAAAATAATCC--AA--------ATAGTAAAGCACATCTGTCA--TATTCTGTGGG----TGTCCTTTA-T--TTC-ATG-TCGTCAGG--ATATATCAAAGGT-CATAAATTCGGTGAAactgcatgtaa
gi|30 : TTATAACCCTGC-AA--CA-TCAAC--T-GTTTG--------GTTGATACTTTGctttaatcaatg
gi|31 : CAACACATGACT---TA-GTGATAATTTGTAATC
gi|33 : GTCATTATATCGAC-CGTAGAATTCG-CGAAAagtaatac
gi|34 : GTAG-TCGA-A-A--TAAA-G---TAAACAGGATTACC
gi|4 : GGTG---AA-A-T-AA-C-GTC-GT--AAATC-AATC-T--AAT-A--AA-TCCTATGAGGA----AT--ACAAATT-ATA-ACA---------GTTG--GG-CAAACA-CGGACC-CT--GAGTGGGATCAG----GTGCCCTGGGTGGGA-TCAG-GT----GCCTAG--GA-----GG-A-GT-AAGCA--TACCC-TGC-CGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCTTTTC-TCTTTA-A--CAA--G---TAAACGGAATAATCCGTACGCTAAATC-AGTATACATATAGAACGGCCCAA--CAATTGGTATGTAA-CCGGTCAAACAACACTTGACC---CA-CAGACAGGTTGTACTGGCAAA--CTAGATCGTT-------------------------ATAATGACCATAAA--AG-TTTGCGA-AA---TGA-TA--CA-TCAAC--T-TGTTT--------GTCAGTAGCCTG-CCTC----GATTT--CAAAA--CTGA----TCATACGCA-G-AA-CAGGT--T-TTT--GC-ATTA-T-CGAA-TCAGTTGAGA
gi|5 : agaTA--TGG-ATA---CA-AA-AA--GGCG---AA-G-TTAA-C-ATT-GT--G--TC-AAACGT--AATCA-TAA-TCCAA--AAAA-----C--ATA---T-ACA-AAATC-GAGT--GTAG--GG--AA-CA-CGGACCTCC--GAC---GA--AA----GTGA---AGGCAGGA-ACAG-GT----GCCATG--GA-----GG-A-AT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-ACCTGTAG-TCGA-A----TAAA-G---TAAACGAGATTACCCGT-AGTTAAATCTAGTAGAAAAATA--ACAGTCTAA--CAAAGGGTATAGAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTC--TATAGCGAC-CGTAGAATTTG-TGAAATGATGACTTTAAACGAGATTCGTtaacctcagcatgcgtcatcaatgtgtcaaaaataaaaattaatcgttattaaatat
gi|6 : ttttgtttacctgaggtttgttagatcgagtaaactattttgaagtttctgttcaagaaatgctattaagtgtgttaactaaA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TT-AAACGT--AATCA-TAG-TCCAA--AAA------C--ACA---T-ACA-ATATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GAC---AA--AA----GCAA---AGGCAGGA-TCAG-GT----GTCATG--GA-----GG-A-GT-AAGCA--TCCAC-TGC-TCA-CC---G-G--TCAC-ACTC-GCC-G-TGA-GCCCTTAG-TCGA-A-A--TAAA-G---TAAACGG-ATTACCCGT-AATCATATCTAGTAGAAAAATG--ACA----------AAGGGTATGAAA-CAAATCAGTCAACATATGACC---TA-GTTATAATTTGTAGTCGCAAA--TAAGATCATTATAGCGAC-CGTGGAATTTG-CGTAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AG--CA-TCAAC--T-
gi|7 : gaaacgagcattgtctttacagtggaggattctaaatcttttacgtcattattatcA---TCTAA-AA-TGGCG---AA-GGT-AA-C-AAT-GT--T--TA-GAACGT--AATCAATAG-ACCCA--AACA----AC--ACA---T-ACA-A--------T--GTAG--GG-CAA-CT-CGGACCTCC---AC---AA--AA----GCGA---A--CAGGAATCAG-AT----GTCATGAAGA-----GG-AAGT-AAGCA--TCGTCCTGC--GA-CC---GCG--TCACGACTC-GCCCG-TGA-GCC-GTAG-TCGA-A-AAACAAAAG---TAAACGAGGTTACCCGT-CGTCAAATCTAGTACGACAAAA--ACAGTCTGAATCAAAGGGTATGAAGGCAAATCAGTCAACATATGACT---TG-ATGGTAATTTGTAATCGCAAA--CAAAGTCATT-TAGCGAC-CGTAGAATTTG-CGAAATGAT-ACTTTGA
gi|8 : cctacacaacttggtgtttcagtggttgatatggcacggttatgtattagacgttttctttctctctgcAAGGGAGCACAATTAGTGCCC-ATAAG-AA-TAACAACAAATTGTT-GGAAAACTTGGTCTCTAAAGACTACAAAAATATTATCTATTAGAAAACCCAACAACTGGTATTCTACATAATACTCCCTACTTCAGA-TAGCTC-TTGC-TACGATTCGAAGCGCGTGGCCTCTCGGAATTAGAACAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCTTCTTTGTTCCTCCTCAACGACTTAGAAATTTTCGTATCTTTCGGGGGGACAGTTTTGTGTTTAAAAACTAAGTTATCTATAATCTGGAAAGAAGCGGCTAGATAGTTATCGGTTT-ATTGTAAGAATCG-TGTAATAAA-TGTGGAGAAAATCGTGACGTTTTGATGCAATCAATTTt
gi|9 : CCCTGCCAA--CA-ACAAC--T-TGTCT--------GTAAGTAGCTTG-CCTC----GATTC--AAAAC--T-GA----TCATACGCA-G-AA-CAAGC--T-CTT--GC-G-TA-T-CGAA-T-AGTTGAGAGA-C--TA-C-ACACCATATGCAG----GT--GAT-GAT-GGAATATT--GC---T---AC-ATGAAATATGCGAAGTGA--ACGATTGGAGAAGCTGAAATT---CGTTC----CG--G-TTGT--CAT--AAA-GTTGAGT-AGT---TAGTTTTG-CCTCGTT-AAT-GTC-AATGTTTTT----CAATTAAAAT-ATCC--AA--------GTA-CGAAGCAGACATGGAAGGGACTCTGT-GGGTTATGTCTCTCACTACTTCAAAGTT--TCGGaggga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CATTTTTTCTTAGGAACACGCATCGATTAATATTTATAATATCTGAATAGAGGTCTTCGTTTTATATTTTATCGATGAAGATGATCGTTAAGTTAATATATCAAGAAATATGTGATGGAAAAGGAAAGATCGAGTACTGTTATTGATGACAGTTCCCAAACTTTTAGAA
Unaligned ( gi|22 ): AAAGCTTTTCACAAATTCTTCCGGGCACGAATAAGAAGCAGGCGGCTTACAACTAGCAACAATTTGTGCTCATAAGAATGCCTGGAGACTGTTGTAAGACCCGATAACAAATACAAATGTTGTCCATAAGGAACCCGAGTATTGCT
Unaligned ( gi|27 ): TAAATCTCATAAAGCCTATAAGGAACACAAATTACGAGTTGGGGAAGCATGAATCCCTGAATA
Unaligned ( gi|29 ): TAAATCCTATAAGGAATACAAATGATAAAAATGGGCAAACATGGATCC
Unaligned ( gi|32 ): TGACAAAATATGTATCTTGTTTCCCAAGAC
Alignments
lowQualScore : 333333333 11 1 111 111 111111 111 11111 1111111111 11111111 3333333333 1111 1111111 1 33333333333333333333333333333333 111 1 1111 222222222 11 22222222 11 1111 1111 222 1 11 11 1 1 333 1 7777777777777777777 222 222 1 1 3333333333 222222 1 77777777777777777777777777777777 222 33333333 11 11 11 1 11 1 1 11 1 11 1 1 11 11 33333333 1 1 1 1 2222 1
lowQualScore : 888888888 1 88 3 111 5 4 111 3 3 3 3 3 44 44 44 33 44 3 3 1 44 444444 44 555 3 3 444 55 55 7 3 3 55 7777 55 8888 111 4 4 9999 66 11111 4 4 4 55 4 4 4 777 4 99 4 4 4 8 4 44 3 3 7777 6 555 0 44 3333333333 1 3 66 1 4 777 4 0 66 3 4 22 4 6 0 1 1 5 66 5 66 5 88888888 1 4 9999 0 66 6666666666 2 4 4 4 1 7777 66 666 8 4 4 2 3 4 4 1111 2 9999 66 4 5 2 5 66 1111111 77 00 1 1 0 77 1 5 0 0 11111111111111111111111111111111 6 99 6 111 3 4444 0 6 6 1 0 555555555 1 0 8 11 99999999 8 1 66 11 11 6 4444 0000 0 8 0 888 44 0 33 1 0 33 0 0 555 0 3 7777777777777777777 2 9 22 8 1 8 555 8 222 0 0 0 3 0 1 7 1 3 6 7 0000000000 666666 6 3 44444444444444444444444444444444 111 55555555 88 88 88 1 5 77 5 5 88 5 1 88 1 5 1 2 88 88 44444444 3 7 3 6 3 0 3 7 1 1 1 1 1 4444 5 1
lowQualScore : ......... . .. . ... . . ... . . . . . .. .. .. .. .. . . . .. ...... .. ... . . ... .. .. . . . .. .... .. .... ... . . .... .. ..... . . . .. . . . ... . .. . . . . . .. . . .... . ... . .. .......... . . .. . . ... . . .. . . .. . . . . . . .. . .. . ........ . . .... . .. .......... . . . . . .... .. ... . . . . . . . .... . .... .. . . . . .. ....... .. .. . . . .. . . . . ................................ . .. . ... . .... . . . . . ......... . . . .. ........ . . .. .. .. . .... .... . . . ... .. . .. . . .. . . ... . . ................... . . .. . . . ... . ... . . . . . . . . . . . .......... ...... . . ................................ ... ........ .. .. .. . . .. . . .. . . .. . . . . .. .. ........ . . . . . . . . . . . . . .... . .
lowQualScore : 000000000 0 33 3 777 0 4 000 3 3 3 3 3 33 22 22 88 22 1 1 5 22 888888 22 444 1 3 000 00 00 3 6 6 55 5555 55 5555 000 0 0 4444 11 11111 4 4 4 55 0 0 0 000 0 55 0 0 0 0 0 22 3 3 2222 7 888 7 66 6666666666 1 4 11 8 4 000 0 8 99 6 4 44 4 6 3 7 7 0 99 0 99 0 11111111 1 0 4444 7 11 3333333333 9 4 4 4 0 7777 11 666 0 0 0 5 0 4 4 7777 6 4444 11 4 0 2 4 99 0000000 11 66 4 0 1 99 7 7 7 4 99999999999999999999999999999999 7 22 7 777 3 2222 7 7 7 0 8 000000000 0 8 0 00 00000000 0 0 66 66 00 7 2222 0000 8 0 8 000 00 0 88 2 2 88 0 0 000 0 2 5555555555555555555 5 8 22 8 2 0 222 0 222 2 8 2 5 2 0 3 0 3 7 3 7777777777 777777 7 3 77777777777777777777777777777777 000 00000000 00 55 55 0 5 55 5 5 00 0 0 00 0 0 0 0 33 33 33333333 3 3 3 7 3 7 3 3 0 0 0 0 0 5555 5 0
consensus : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTG-CCTC----GATTT--AAAAA--C-GA----TCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AATACCAACAGATTG-TTG-AAGACNTGGTCTCCAAAGACTACANAAATATTATCTATNAGAAA-CCCAAGCATTG---CTCT---TAATAT--CNTACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
Reference ( family-406 ) : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTG-CCTC----GATTT--AAAAA--C-GA----TCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AATACCAACAGATTG-TTG-AAGACNTGGTCTCCAAAGACTACANAAATATTATCTATNAGAAA-CCCAAGCATTG---CTCT---TAATAT--CCTACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
gi|1 : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACT---------TATGGTGTG--TAG-ATA---TGTAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-GCA-AATAC-GGCT--GTAA--GG-CAA-TA-CGCACCTTC--GGC---GA--AA----GCAA---CGGCACTA-TCAG-CA----GCCAGG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-A-TGA-GCCTGTAG-TCGA-A-A--CAAA-G---TAAACGGGGTTACCAGT-CGTCAAATCTAGTATGAAAATG--ACAGTCTAA--CAAAGGGTAGGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CGAGGTCATTATAGCGA--------ATTTG-CGGAATGGTGACTTTAAA---AATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGT-GTTTGGCTTC----GCTTT--AAAAA-----A----TCATACGCA-ATGA-CATGC--C-CTT--GC-G-TAAT-CGAA-TCAACTGAGAGA-C-ATA-C-ACACCATAAGCAG----GT--GAT-AGT-GGTACATT--AC---T---AC-AGAAAA-AAAGAAAGTTG--ACAATTGCA-AAGTCAAA--G---CATCA----CC--T-TTAT--CTTTGAAT-GT--AGT-TGT---CAG-TCTC-C--TATT-AGA-GCCAA-TA----T----CAAGTAAAAT-ATCC--AA--------ATA-TGAAGCACATCTGTCA--GATTCTGT-GG----TGTCCTTTATT--TTC-AAGTTCGTCAGGATATATATCAAATGGACAT-AATT--GTGAAAATTATGAATGTTAATTAATAAGACATCGTCT--ATAT-ACCTA-TAAGTAAGGTTGAAGGACACGGCAAG---TTTTT-T-GTT-------------------TTTATCCCGTAATAGTTTCTGAACAAATTCTGCTTCGTGTGAATTTAAAATTAAGTCTGCCAATAAGGGGGCGCAATTAGTGCCCGATA-G-AATACCAACAGATTG-T------AC---------AAAGACTACATAAATAT-ATCTATAAGAAA-CC-AAGCAT-G---CTCT---TAATAT--CTT-CTTCAGAGTA-CT--T-GTGT------------------------GGAATCAGAG---TGG--------TT--TCTG--ACAAAAT--ATGTATCTT-GTT--TCC-CAATGAC-CAGAAACTT--GTAT-TTTCGGGTG--CCGTTTT-TGTTCAAAAAGCAA-TTATCAGTTATCTG--AAAAAGC--CTAGATTTTAATT--T-T-G-TG-AGGAATTGTTGT-ATAAAGTGTGGAG-AAATTAT-ACGTTT-GATGCAGTCAATTTTAGAAAAATCTAGTGACTTGAAGTTTTCTATAAGCTCT----TTAGAGTTTTTGAGAATCCACATC-GATTGACACCACTTATGGAATATGTAGT
gi|10 : AAACGTGACT-GTTGAACCCCTGC-AAATCACTCAACGTTGTTCTGTCCAAAACGTCCGTAGTTTG-CCTCCCGAGATATCAAAAAA--CTGA----TCATAT-CA-G-AAACAAGTTTC-TTC--GT-G-TAAT-TGAAATAAGTTGAGA-A-C-ATA-CCACACCATATGCAGTGAGGTTGGAA-AAT-GCTA-ATTTAGCAAAT---AT-GGAGAA-AAAGAA--TTG--AC-AGTGCA-AG--CGAAA-TGAACATCAATCCCG--TGTTTT--TA---AAT-TT--GGA-TGTATTCAGATTTGAC--CGTTTAGATGCCAAATG----TGATACATATATAAT-ATCCCCAATTCCGCCTATG-CGAAG--GATG---GA--GACTCTGT-GG----TGTCGTTTATT--Tggaacagtgcatagaggtaaccgccatatcaacaagtaaagaaggaaggttaaaccgttgattcttatcagaaattgtcatcgtcaaacataaacacagataacagacagattcatgagggaaatatacttcaaagtttaaacaaaaataagag
gi|11 : ttttaaAGTCATCGTAG--ATAT-ATCGAGTATGTCGAATTAAAGGCTACCACTAGAGATTTCC-CTCTT-------------------CTCAT---GTAGAAGCTTTTGAATGAATTCTGCTTCGTAAGAATATAAAAACGGACCAGCTAACAAAGGAGCACAGTTCGTGCCC-ATG-GAAATTCCAGCGGACTGTTTG-AAGACCTGATCACCAAAAACTACAAAGATATTGTCAATGAGGAA-CTCCAGCATTG---CT-T---TAACAT--CA-ACTTCAGAGTA-CTTGT-GCGTA-GATTC-AGG---GTGGc
gi|12 : ttagacagcatgttacccaatggcagaccatactggcaaactaaatcgttTAATAG-TAGCG---AA-G-T-AA-C-AAA-GT--A--TCCAAACGT--A-TCA-TAGCTCCAC--AAA----------CA---T-ACA-AAAT--GAGT--GTAGAAGGTCAA-CA-CGGACCTTC--GAG---GA--AA----GCGAC--AGACAGGT-ACAG-GT----GTCAGT--GATTACGGG-A-GTCAAGCA----CTC-TGC-TGACCC---G-G--TCAC-ACCCGGCC-G-TGA-TCAC-TGGCTCGA-AGA--CAAA-AGTTTAAACAGtggtcatcagaa
gi|13 : gaaaatttagttagtgcgtttttaaaaactattctctaaatttttT-GG----TGTTCTTTATT--T-C-GAGTTCGTCGG-A-ATGTATTAAATGCACTT-AATT--ATGAAAATTATCATTGTTAAGTGATAAGGCATCATCTGCATATTATCTA-TATGTAAGGTTGAAGAACACGACAAG---TTTTTCTTGTT-------------------TTTATCCCGTAA--GTTTTTGAAAAAATT-TGCTTCGTATCGATATTAAAATAAGTCTGCTAATAAGGGGGCACAATTAGTGCCC-ATACA-AATACCAACAGATTG-TAC-AAGACATGGTCTCCAAAGACTACATAAATaggagatttactcctctaatcccttaacaaatact
gi|14 : ATAA-AACTGGCGCGTAATG-T-AAAC-AAT-GCTGA--TC-AATTGTTAAATCA-TAG-TCCCC--AAAA-----C--ATA---A-ACA-AAATCAGAGTCTGTAG--TGTCAA-CAACGGACCTCCCCGAC---AA--AACGTAGCGA---AGG-AGGA-TCAGCGTCCTCGCTATG--AA-----GGGA-GT-ACACAATTTCTC-TGCCTGA-TCTGCG-GC-TCAC-ACCC-GCC-GTTAA-GCCC-TAG-TC-A-A-T--TAAATG---TAAACgctt
gi|15 : agacta--------GTCAGTAACCTG-TCTC----GATTT--GAAAA--A-AA-----AATACACA-G-AA-CAATA--T-TTTATGC-G-TA-T-C-AA-TCGGTTGACGGA-C-AT--------------CAG----GC--GAT-AAT-GG---ATT--GC---TGCCAC-GTAAAT-ATGGGAAGCTG--ATGATGGAG-ACGCCGAA--T---CA
gi|16 : aattCA--TCCCT-AAT-TGA-CC---G-GGTCCAT-ATC--GCC-GGTGACGCCTATAC-TTGA-A-C--CAG--G---TACACACAATAATCTGT-AGTTAAAATCAATATATCAA-G--A-AGCC-AA--CAACTGATA-GCAA-CACGTC---TAACAT-TGACC---CA-AT-ATATGTTGTA-TTGCAAAACCAA--TCGCTGTAACGACACG---AATTTGGCGAAATGAatattttttgttgcaaattttagtaggtgaattgctccaaaaggtaacgcctacatgtatgttcaataaattaacc
gi|17 : agcAATTATCTATAATCTG--AAAAAGC--CTAGAATTCAATC--TCTAG-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCAT-ACGTTTTGATGCAGTCAATTTTAGAAAATTCTCGTGATTTTAGGTTATCCAAAAGCTCTTTAATTAGAATTTTTAAGAATCCACATCTGATTGACACCACTTCTAGAATATGTAGTaaatcgac
gi|18 : TAGCCTG-C-TC----GGTTA--AGAAA--A-AACTTTTAATACGCA-G-AT-CACGT--CTCTT--CC-A-TA-T-CGAA-TAAG-TGGGAGA-CAATGTT-ACACTATATGCAG----AT--AATCAATGGGCATATT--G
gi|2 : ttgtaagttA-TGGCG---AA-G-T-GA-C-AAT-GT--A--TT-GAATGT--AATAA-GAG-TCCCA--AAAA-----C--GCA---T-ACA-AAATC-AAGT--GTAG--GG-CAA-CA-CAGCCCTCT--GAC---AA--AA----GCGA---AGGCAGGG-TCAG-GT----GCCATG--GA-----AG-T-GT-AAGCA--TCCTA-TGC-TGA-CC---G-G--TCTC-AAAC-GCC-G-TGA-GCCCGTAG-TCAA-A-A--TAAA-G---TTAACGTTGTTGTCAGC-TTTCAAATCCAGTACGGAAATG--ACAGTCTAA--C-AAGGATATGAAA-CAAATAAGTCAACACATGACT---TA-GTGATCATTTGTAATCGTAAA--CATGTTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTTAATGGGATCTGTTATAACCCTGC-AC--CA-TCCAC--T-TTTTG--------GATAATAGTTGG-CCTC----ACTTT--AAAAAATC--A----TCATACTCA-T-GA-CATGC--C-CTT--GT-C-TT-TGCG-A-TCAACTAAGAGG-C-ATA-C-ACACCATAAGCAT----GT--GAT-AGT-GGTGCATT--AC---T---AT-ATAGAATATGGAGAATTG--ATGATTGCT-AAGTCT-G--C---CA-------------------TAT--AAT-GT--AGC-TGT---CAG-TCTG-C--CAAT-AGA-GT-AAATA----T----TAAGT-AAAT-ATCA--AA--------ATA-TGAAACATATTGGTTA--GGTTCTGT-GG----TGTCCTATA-T--TTC-GAGTTCGTCGGG--ATATACCAAATGTACAT-AATT--GTGAAAAGTATGATTGGTAATTGATAAGACATCGTTT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAGTTTTTTTT-TTGTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGCAATAGTTTTTTTACAAAATATGCATCGTTTGAATACAAAAATAAATTTGCCAATAAGGGGGCACAATTAGTGCCC-ATG-GTAATATCAACAGATTG-Tgtctcatgaatacggcggagtgcttgagcgatgtgaaggctaaaggtccataacggtggtagtta
gi|20 : ct-TA-T-CGAA-TAAACTGGAAAA-T-AT--C-ACACAGTAAGCAG----GC--GAT-TAT-G-TATATT--GC---T---ACCATAGAA-AGAGAAAGTTC--ACGATTGCA-AGTTCAAG--T---TACCA----CGCTT-TCATA-TAC--AAT-GC--AAT-TGT---TAC-CCTA-C--CATT-AGA-GTTAA
gi|21 : cactttaaataaaattaagatgatA-A-T-AA-C-AAG-GT--A--TT-AAACGT--AGTCA-TAG-TCCCA--AAAA----AT--ACA---C-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---AA--AA----GTGA---AGGTAGGA-TCAG-tc
gi|23 : agcattcatatttcttacattgtataaggataatgttttatcttctttttatctatacCAAATGCATTATAATTTGAATGGTATACCTTATAA-AT-TGGCG---AA-G-T-AA-AGAAT-GT--G--TT-CAACGT--AATCA-TAG-TCCGG--AAAA----AT--ATA---C-ACA-AAGGC-GAGT--GGAG--GG-AAA-CA-C
gi|24 : gCCGTAG-TCGA-A-A--CAAA-A---TAAACGGGTTTACTCTT-CATCAAATCTAGTACG--AAT------GTCTAA--CAGAGGGTATGACA-TAACTCAGTCAACATATGACT---TA-GTGAT
gi|25 : GTAGCTTA-CCTC----GATTT--AAAAAT-C-GA----TCATACCTA-G-AA-CAAGC--T-TTT--CCTG-CA-T-CGAA-TCAGTTGAGAAA-C-ATT-T-ACCATATATGCGA----GT--GAT-
gi|26 : A---TATAA-AA-TGGCTT--AA-G-T----C-AATAGT--A--T---AACGT--AATCT-GAG-TCCAA---AAA----AC--ATA---TAACACAAATg
gi|28 : tcattatgactttcc-G-T-AA-C-AAA-GT--A--TC-AAGCGT--AACCA-TAG-TCCAA--AAA-----AC--ATG---T-Aataacaatataaac
gi|3 : --A--TC-AAACGT--AATCA-TAG-TCCAA--AAAATACAACCCACA---T-TCA-AAATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GA---------------------AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGC---------TGC-TAA-CC---G-G--GCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--TAAA-G---TAAACGGGATTACCCGT-CGTAAAATCTAGT------------------------------ATGAAA----ATCAGTCAACATATGACTAATTATATAATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAAGAATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGTAGTTGG-CCTC----GCTTT--AAAAAATC--A----TCATAAGCATG-GA--ATGC--C-CTT--GC-A-TA-T-CGAA-TCAAATAAGAGATC-ACA-C-ACACCATAAGCAA----GT--GAT-AGT-CGTACATT--GC---T---AC-AT--AA-AAGAAAAG-TGACACAATTGCA-AAGTCAAG--T---CATCA----CG--T-TTATTATAT--AATGGT--AGTCTGT---CAG-TCTG----CATT-AGA-GTCAAATG----T----TAATTAAAATAATCC--AA--------ATAGTAAAGCACATCTGTCA--TATTCTGTGGG----TGTCCTTTA-T--TTC-ATG-TCGTCAGG--ATATATCAAAGGT-CATAAATTCGGTGAAactgcatgtaa
gi|30 : TTATAACCCTGC-AA--CA-TCAAC--T-GTTTG--------GTTGATACTTTG-ctttaatcaatg
gi|31 : CAACACATGACT---TA-GTGATAATTTGTAATC
gi|33 : GTCATTATATCGAC-CGTAGAATTCG-CGAAAagtaatac
gi|34 : GTAG-TCGA-A-A--TAAA-G---TAAACAGGATTACC
gi|4 : GGTG---AA-A-T-AA-C-GTC-GT--AAATC-AATC-T--AAT-A--AA-TCCTATGAGGA----AT--ACAAATT-ATA-ACA---------GTTG--GG-CAAACA-CGGACC-CT--GAGTGGGATCAG----GTGCCCTGGGTGGGA-TCAG-GT----GCCTAG--GA-----GG-A-GT-AAGCA--TACCC-TGC-CGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCTTTTC-TCTTTA-A--CAA--G---TAAACGGAATAATCCGTACGCTAAATC-AGTATACATATAGAACGGCCCAA--CAATTGGTATGTAA-CCGGTCAAACAACACTTGACC---CA-CAGACAGGTTGTACTGGCAAA--CTAGATCGTT-------------------------ATAATGACCATAAA--AG-TTTGCGA-AA---TGA-TA--CA-TCAAC--T-TGTTT--------GTCAGTAGCCTG-CCTC----GATTT--CAAAA--CTGA----TCATACGCA-G-AA-CAGGT--T-TTT--GC-ATTA-T-CGAA-TCAGTTGAGA
gi|5 : agaTA--TGG-ATA---CA-AA-AA--GGCG---AA-G-TTAA-C-ATT-GT--G--TC-AAACGT--AATCA-TAA-TCCAA--AAAA-----C--ATA---T-ACA-AAATC-GAGT--GTAG--GG--AA-CA-CGGACCTCC--GAC---GA--AA----GTGA---AGGCAGGA-ACAG-GT----GCCATG--GA-----GG-A-AT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-ACCTGTAG-TCGA-A----TAAA-G---TAAACGAGATTACCCGT-AGTTAAATCTAGTAGAAAAATA--ACAGTCTAA--CAAAGGGTATAGAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTC--TATAGCGAC-CGTAGAATTTG-TGAAATGATGACTTTAAACGAGATTCGTtaacctcagcatgcgtcatcaatgtgtcaaaaataaaaattaatcgttattaaatat
gi|6 : ttttgtttacctgaggtttgttagatcgagtaaactattttgaagtttctgttcaagaaatgctattaagtgtgttaactaaA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TT-AAACGT--AATCA-TAG-TCCAA--AAA------C--ACA---T-ACA-ATATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GAC---AA--AA----GCAA---AGGCAGGA-TCAG-GT----GTCATG--GA-----GG-A-GT-AAGCA--TCCAC-TGC-TCA-CC---G-G--TCAC-ACTC-GCC-G-TGA-GCCCTTAG-TCGA-A-A--TAAA-G---TAAACGG-ATTACCCGT-AATCATATCTAGTAGAAAAATG--ACA----------AAGGGTATGAAA-CAAATCAGTCAACATATGACC---TA-GTTATAATTTGTAGTCGCAAA--TAAGATCATTATAGCGAC-CGTGGAATTTG-CGTAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AG--CA-TCAAC--T-
gi|7 : gaaacgagcattgtctttacagtggaggattctaaatcttttacgtcattattatcA---TCTAA-AA-TGGCG---AA-GGT-AA-C-AAT-GT--T--TA-GAACGT--AATCAATAG-ACCCA--AACA----AC--ACA---T-ACA-A--------T--GTAG--GG-CAA-CT-CGGACCTCC---AC---AA--AA----GCGA---A--CAGGAATCAG-AT----GTCATGAAGA-----GG-AAGT-AAGCA--TCGTCCTGC--GA-CC---GCG--TCACGACTC-GCCCG-TGA-GCC-GTAG-TCGA-A-AAACAAAAG---TAAACGAGGTTACCCGT-CGTCAAATCTAGTACGACAAAA--ACAGTCTGAATCAAAGGGTATGAAGGCAAATCAGTCAACATATGACT---TG-ATGGTAATTTGTAATCGCAAA--CAAAGTCATT-TAGCGAC-CGTAGAATTTG-CGAAATGAT-ACTTTGA
gi|8 : cctacacaacttggtgtttcagtggttgatatggcacggttatgtattagacgttttctttctctctgcAAGGGAGCACAATTAGTGCCC-ATAAG-AATAACAACAAATTG-TTGGAAAACTTGGTCTCTAAAGACTACAAAAATATTATCTATTAGAAAACCCAACAACTGGTATTCTACATAATACTCCCTACTTCAGA-TAGCTC-TTGC-TACGATTCGAAGCGCGTGGCCTCTCGGAATTAGAACAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCTTCTTTGTTCCTCCTCAACGACTTAGAAATTTTCGTATCTTTCGGGGGGACAGTTTTGTGTTTAAAAACTAAGTTATCTATAATCTGGAAAGAAGCGGCTAGATAGTTATCGGTTT-ATTGTAAGAATCG-TGTAATAAA-TGTGGAGAAAATCGTGACGTTTTGATGCAATCAATTTt
gi|9 : CCCTGCCAA--CA-ACAAC--T-TGTCT--------GTAAGTAGCTTG-CCTC----GATTC--AAAAC--T-GA----TCATACGCA-G-AA-CAAGC--T-CTT--GC-G-TA-T-CGAA-T-AGTTGAGAGA-C--TA-C-ACACCATATGCAG----GT--GAT-GAT-GGAATATT--GC---T---AC-ATGAAATATGCGAAGTGA--ACGATTGGAGAAGCTGAAATT---CGTTC----CG--G-TTGT--CAT--AAA-GTTGAGT-AGT---TAGTTTTG-CCTCGTT-AAT-GTC-AATGTTTTT----CAATTAAAAT-ATCC--AA--------GTA-CGAAGCAGACATGGAAGGGACTCTGT-GGGTTATGTCTCTCACTACTTCAAAGTT--TCGGaggga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CATTTTTTCTTAGGAACACGCATCGATTAATATTTATAATATCTGAATAGAGGTCTTCGTTTTATATTTTATCGATGAAGATGATCGTTAAGTTAATATATCAAGAAATATGTGATGGAAAAGGAAAGATCGAGTACTGTTATTGATGACAGTTCCCAAACTTTTAGAA
Unaligned ( gi|22 ): AAAGCTTTTCACAAATTCTTCCGGGCACGAATAAGAAGCAGGCGGCTTACAACTAGCAACAATTTGTGCTCATAAGAATGCCTGGAGACTGTTGTAAGACCCGATAACAAATACAAATGTTGTCCATAAGGAACCCGAGTATTGCT
Unaligned ( gi|27 ): TAAATCTCATAAAGCCTATAAGGAACACAAATTACGAGTTGGGGAAGCATGAATCCCTGAATA
Unaligned ( gi|29 ): TAAATCCTATAAGGAATACAAATGATAAAAATGGGCAAACATGGATCC
Unaligned ( gi|32 ): TGACAAAATATGTATCTTGTTTCCCAAGAC
Alignments
lowQualScore : 333333333 11 1 111 111 111111 111 11111 1111111111 11111111 3333333333 1111 1111111 1 33333333333333333333333333333333 111 1 1111 222222222 11 22222222 11 1111 1111 222 1 11 11 1 1 333 1 7777777777777777777 222 222 1 1 3333333333 222222 1 77777777777777777777777777777777 222 33333333 11 11 11 1 11 1 1 11 1 11 1 1 11 11 33333333 1 1 1 1 2222 1
lowQualScore : 888888888 1 88 3 111 5 4 111 3 3 3 3 3 44 44 44 33 44 3 3 1 44 444444 44 555 3 3 444 55 55 7 3 3 55 7777 55 8888 111 4 4 9999 66 11111 4 4 4 55 4 4 4 777 4 99 4 4 4 8 4 44 3 3 7777 6 555 0 44 3333333333 1 3 66 1 4 777 4 0 66 3 4 22 4 6 0 1 1 5 66 5 66 5 88888888 1 4 9999 0 66 6666666666 2 4 4 4 1 7777 66 666 8 4 4 2 3 4 4 1111 2 9999 66 4 5 2 5 66 1111111 77 00 1 1 0 77 1 5 0 0 11111111111111111111111111111111 6 99 6 111 3 4444 0 6 6 1 0 555555555 1 0 8 11 99999999 8 1 66 11 11 6 4444 0000 0 8 0 888 44 0 33 1 0 33 0 0 555 0 3 7777777777777777777 2 9 22 8 1 8 555 8 222 0 0 0 3 0 1 7 1 3 6 7 0000000000 444444 6 3 44444444444444444444444444444444 111 55555555 88 88 88 1 5 77 5 5 88 5 1 88 1 5 1 2 88 88 44444444 3 7 3 6 3 0 3 7 1 1 1 1 1 4444 5 1
lowQualScore : ......... . .. . ... . . ... . . . . . .. .. .. .. .. . . . .. ...... .. ... . . ... .. .. . . . .. .... .. .... ... . . .... .. ..... . . . .. . . . ... . .. . . . . . .. . . .... . ... . .. .......... . . .. . . ... . . .. . . .. . . . . . . .. . .. . ........ . . .... . .. .......... . . . . . .... .. ... . . . . . . . .... . .... .. . . . . .. ....... .. .. . . . .. . . . . ................................ . .. . ... . .... . . . . . ......... . . . .. ........ . . .. .. .. . .... .... . . . ... .. . .. . . .. . . ... . . ................... . . .. . . . ... . ... . . . . . . . . . . . .......... ...... . . ................................ ... ........ .. .. .. . . .. . . .. . . .. . . . . .. .. ........ . . . . . . . . . . . . . .... . .
lowQualScore : 000000000 0 33 3 777 0 4 000 3 3 3 3 3 33 22 22 88 22 1 1 5 22 888888 22 444 1 3 000 00 00 3 6 6 55 5555 55 5555 000 0 0 4444 11 11111 4 4 4 55 0 0 0 000 0 55 0 0 0 0 0 22 3 3 2222 7 888 7 66 6666666666 1 4 11 8 4 000 0 8 99 6 4 44 4 6 3 7 7 0 99 0 99 0 11111111 1 0 4444 7 11 3333333333 9 4 4 4 0 7777 11 666 0 0 0 5 0 4 4 7777 6 4444 11 4 0 2 4 99 0000000 11 66 4 0 1 99 7 7 7 4 99999999999999999999999999999999 7 22 7 777 3 2222 7 7 7 0 8 000000000 0 8 0 00 00000000 0 0 66 66 00 7 2222 0000 8 0 8 000 00 0 88 2 2 88 0 0 000 0 2 5555555555555555555 5 8 22 8 2 0 222 0 222 2 8 2 5 2 0 3 0 3 7 3 7777777777 000000 7 3 77777777777777777777777777777777 000 00000000 00 55 55 0 5 55 5 5 00 0 0 00 0 0 0 0 33 33 33333333 3 3 3 7 3 7 3 3 0 0 0 0 0 5555 5 0
consensus : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTG-CCTC----GATTT--AAAAA--C-GA----TCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AATACCAACAGATTG-TTG-AAGACNTGGTCTCCAAAGACTACANAAATATTATCTATNAGAAA-CCCAAGCATTG---CTCT---TAATAT--CNTACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
Reference ( family-406 ) : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTG-CCTC----GATTT--AAAAA--C-GA----TCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AATACCAACAGATTG-TTG-AAGACNTGGTCTCCAAAGACTACANAAATATTATCTATNAGAAA-CCCAAGCATTG---CTCT---TAATAT--CNTACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
gi|1 : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACT---------TATGGTGTG--TAG-ATA---TGTAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-GCA-AATAC-GGCT--GTAA--GG-CAA-TA-CGCACCTTC--GGC---GA--AA----GCAA---CGGCACTA-TCAG-CA----GCCAGG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-A-TGA-GCCTGTAG-TCGA-A-A--CAAA-G---TAAACGGGGTTACCAGT-CGTCAAATCTAGTATGAAAATG--ACAGTCTAA--CAAAGGGTAGGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CGAGGTCATTATAGCGA--------ATTTG-CGGAATGGTGACTTTAAA---AATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGT-GTTTGGCTTC----GCTTT--AAAAA-----A----TCATACGCA-ATGA-CATGC--C-CTT--GC-G-TAAT-CGAA-TCAACTGAGAGA-C-ATA-C-ACACCATAAGCAG----GT--GAT-AGT-GGTACATT--AC---T---AC-AGAAAA-AAAGAAAGTTG--ACAATTGCA-AAGTCAAA--G---CATCA----CC--T-TTAT--CTTTGAAT-GT--AGT-TGT---CAG-TCTC-C--TATT-AGA-GCCAA-TA----T----CAAGTAAAAT-ATCC--AA--------ATA-TGAAGCACATCTGTCA--GATTCTGT-GG----TGTCCTTTATT--TTC-AAGTTCGTCAGGATATATATCAAATGGACAT-AATT--GTGAAAATTATGAATGTTAATTAATAAGACATCGTCT--ATAT-ACCTA-TAAGTAAGGTTGAAGGACACGGCAAG---TTTTT-T-GTT-------------------TTTATCCCGTAATAGTTTCTGAACAAATTCTGCTTCGTGTGAATTTAAAATTAAGTCTGCCAATAAGGGGGCGCAATTAGTGCCCGATA-G-AATACCAACAGATTG-T------AC---------AAAGACTACATAAATAT-ATCTATAAGAAA-CC-AAGCAT-G---CTCT---TAATAT--CTT-CTTCAGAGTA-CT--T-GTGT------------------------GGAATCAGAG---TGG--------TT--TCTG--ACAAAAT--ATGTATCTT-GTT--TCC-CAATGAC-CAGAAACTT--GTAT-TTTCGGGTG--CCGTTTT-TGTTCAAAAAGCAA-TTATCAGTTATCTG--AAAAAGC--CTAGATTTTAATT--T-T-G-TG-AGGAATTGTTGT-ATAAAGTGTGGAG-AAATTAT-ACGTTT-GATGCAGTCAATTTTAGAAAAATCTAGTGACTTGAAGTTTTCTATAAGCTCT----TTAGAGTTTTTGAGAATCCACATC-GATTGACACCACTTATGGAATATGTAGT
gi|10 : AAACGTGACT-GTTGAACCCCTGC-AAATCACTCAACGTTGTTCTGTCCAAAACGTCCGTAGTTTG-CCTCCCGAGATATCAAAAAA--CTGA----TCATAT-CA-G-AAACAAGTTTC-TTC--GT-G-TAAT-TGAAATAAGTTGAGA-A-C-ATA-CCACACCATATGCAGTGAGGTTGGAA-AAT-GCTA-ATTTAGCAAAT---AT-GGAGAA-AAAGAA--TTG--AC-AGTGCA-AG--CGAAA-TGAACATCAATCCCG--TGTTTT--TA---AAT-TT--GGA-TGTATTCAGATTTGAC--CGTTTAGATGCCAAATG----TGATACATATATAAT-ATCCCCAATTCCGCCTATG-CGAAG--GATG---GA--GACTCTGT-GG----TGTCGTTTATT--Tggaacagtgcatagaggtaaccgccatatcaacaagtaaagaaggaaggttaaaccgttgattcttatcagaaattgtcatcgtcaaacataaacacagataacagacagattcatgagggaaatatacttcaaagtttaaacaaaaataagag
gi|11 : ttttaaAGTCATCGTAG--ATAT-ATCGAGTATGTCGAATTAAAGGCTACCACTAGAGATTTCC-CTCTT-------------------CTCAT---GTAGAAGCTTTTGAATGAATTCTGCTTCGTAAGAATATAAAAACGGACCAGCTAACAAAGGAGCACAGTTCGTGCCC-ATG-GAAATTCCAGCGGACTGTTTG-AAGACCTGATCACCAAAAACTACAAAGATATTGTCAATGAGGAA-CTCCAGCATTG---CT-T---TAACAT--CA-ACTTCAGAGTA-CTTGT-GCGTA-GATTC-AGG---GTGGc
gi|12 : ttagacagcatgttacccaatggcagaccatactggcaaactaaatcgttTAATAG-TAGCG---AA-G-T-AA-C-AAA-GT--A--TCCAAACGT--A-TCA-TAGCTCCAC--AAA----------CA---T-ACA-AAAT--GAGT--GTAGAAGGTCAA-CA-CGGACCTTC--GAG---GA--AA----GCGAC--AGACAGGT-ACAG-GT----GTCAGT--GATTACGGG-A-GTCAAGCA----CTC-TGC-TGACCC---G-G--TCAC-ACCCGGCC-G-TGA-TCAC-TGGCTCGA-AGA--CAAA-AGTTTAAACAGtggtcatcagaa
gi|13 : gaaaatttagttagtgcgtttttaaaaactattctctaaatttttT-GG----TGTTCTTTATT--T-C-GAGTTCGTCGG-A-ATGTATTAAATGCACTT-AATT--ATGAAAATTATCATTGTTAAGTGATAAGGCATCATCTGCATATTATCTA-TATGTAAGGTTGAAGAACACGACAAG---TTTTTCTTGTT-------------------TTTATCCCGTAA--GTTTTTGAAAAAATT-TGCTTCGTATCGATATTAAAATAAGTCTGCTAATAAGGGGGCACAATTAGTGCCC-ATACA-AATACCAACAGATTG-TAC-AAGACATGGTCTCCAAAGACTACATAAATaggagatttactcctctaatcccttaacaaatact
gi|14 : ATAA-AACTGGCGCGTAATG-T-AAAC-AAT-GCTGA--TC-AATTGTTAAATCA-TAG-TCCCC--AAAA-----C--ATA---A-ACA-AAATCAGAGTCTGTAG--TGTCAA-CAACGGACCTCCCCGAC---AA--AACGTAGCGA---AGG-AGGA-TCAGCGTCCTCGCTATG--AA-----GGGA-GT-ACACAATTTCTC-TGCCTGA-TCTGCG-GC-TCAC-ACCC-GCC-GTTAA-GCCC-TAG-TC-A-A-T--TAAATG---TAAACgctt
gi|15 : agacta--------GTCAGTAACCTG-TCTC----GATTT--GAAAA--A-AA-----AATACACA-G-AA-CAATA--T-TTTATGC-G-TA-T-C-AA-TCGGTTGACGGA-C-AT--------------CAG----GC--GAT-AAT-GG---ATT--GC---TGCCAC-GTAAAT-ATGGGAAGCTG--ATGATGGAG-ACGCCGAA--T---CA
gi|16 : aattCA--TCCCT-AAT-TGA-CC---G-GGTCCAT-ATC--GCC-GGTGACGCCTATAC-TTGA-A-C--CAG--G---TACACACAATAATCTGT-AGTTAAAATCAATATATCAA-G--A-AGCC-AA--CAACTGATA-GCAA-CACGTC---TAACAT-TGACC---CA-AT-ATATGTTGTA-TTGCAAAACCAA--TCGCTGTAACGACACG---AATTTGGCGAAATGAatattttttgttgcaaattttagtaggtgaattgctccaaaaggtaacgcctacatgtatgttcaataaattaacc
gi|17 : agcAATTATCTATAATCTG--AAAAAGC--CTAGAATTCAATC--TCTAG-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCAT-ACGTTTTGATGCAGTCAATTTTAGAAAATTCTCGTGATTTTAGGTTATCCAAAAGCTCTTTAATTAGAATTTTTAAGAATCCACATCTGATTGACACCACTTCTAGAATATGTAGTaaatcgac
gi|18 : TAGCCTG-C-TC----GGTTA--AGAAA--A-AACTTTTAATACGCA-G-AT-CACGT--CTCTT--CC-A-TA-T-CGAA-TAAG-TGGGAGA-CAATGTT-ACACTATATGCAG----AT--AATCAATGGGCATATT--G
gi|2 : ttgtaagttA-TGGCG---AA-G-T-GA-C-AAT-GT--A--TT-GAATGT--AATAA-GAG-TCCCA--AAAA-----C--GCA---T-ACA-AAATC-AAGT--GTAG--GG-CAA-CA-CAGCCCTCT--GAC---AA--AA----GCGA---AGGCAGGG-TCAG-GT----GCCATG--GA-----AG-T-GT-AAGCA--TCCTA-TGC-TGA-CC---G-G--TCTC-AAAC-GCC-G-TGA-GCCCGTAG-TCAA-A-A--TAAA-G---TTAACGTTGTTGTCAGC-TTTCAAATCCAGTACGGAAATG--ACAGTCTAA--C-AAGGATATGAAA-CAAATAAGTCAACACATGACT---TA-GTGATCATTTGTAATCGTAAA--CATGTTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTTAATGGGATCTGTTATAACCCTGC-AC--CA-TCCAC--T-TTTTG--------GATAATAGTTGG-CCTC----ACTTT--AAAAAATC--A----TCATACTCA-T-GA-CATGC--C-CTT--GT-C-TT-TGCG-A-TCAACTAAGAGG-C-ATA-C-ACACCATAAGCAT----GT--GAT-AGT-GGTGCATT--AC---T---AT-ATAGAATATGGAGAATTG--ATGATTGCT-AAGTCT-G--C---CA-------------------TAT--AAT-GT--AGC-TGT---CAG-TCTG-C--CAAT-AGA-GT-AAATA----T----TAAGT-AAAT-ATCA--AA--------ATA-TGAAACATATTGGTTA--GGTTCTGT-GG----TGTCCTATA-T--TTC-GAGTTCGTCGGG--ATATACCAAATGTACAT-AATT--GTGAAAAGTATGATTGGTAATTGATAAGACATCGTTT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAGTTTTTTTT-TTGTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGCAATAGTTTTTTTACAAAATATGCATCGTTTGAATACAAAAATAAATTTGCCAATAAGGGGGCACAATTAGTGCCC-ATG-GTAATATCAACAGATTG-Tgtctcatgaatacggcggagtgcttgagcgatgtgaaggctaaaggtccataacggtggtagtta
gi|20 : ct-TA-T-CGAA-TAAACTGGAAAA-T-AT--C-ACACAGTAAGCAG----GC--GAT-TAT-G-TATATT--GC---T---ACCATAGAA-AGAGAAAGTTC--ACGATTGCA-AGTTCAAG--T---TACCA----CGCTT-TCATA-TAC--AAT-GC--AAT-TGT---TAC-CCTA-C--CATT-AGA-GTTAA
gi|21 : cactttaaataaaattaagatgatA-A-T-AA-C-AAG-GT--A--TT-AAACGT--AGTCA-TAG-TCCCA--AAAA----AT--ACA---C-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---AA--AA----GTGA---AGGTAGGA-TCAG-tc
gi|23 : agcattcatatttcttacattgtataaggataatgttttatcttctttttatctatacCAAATGCATTATAATTTGAATGGTATACCTTATAA-AT-TGGCG---AA-G-T-AA-AGAAT-GT--G--TT-CAACGT--AATCA-TAG-TCCGG--AAAA----AT--ATA---C-ACA-AAGGC-GAGT--GGAG--GG-AAA-CA-C
gi|24 : gCCGTAG-TCGA-A-A--CAAA-A---TAAACGGGTTTACTCTT-CATCAAATCTAGTACG--AAT------GTCTAA--CAGAGGGTATGACA-TAACTCAGTCAACATATGACT---TA-GTGAT
gi|25 : GTAGCTTA-CCTC----GATTT--AAAAAT-C-GA----TCATACCTA-G-AA-CAAGC--T-TTT--CCTG-CA-T-CGAA-TCAGTTGAGAAA-C-ATT-T-ACCATATATGCGA----GT--GAT-
gi|26 : A---TATAA-AA-TGGCTT--AA-G-T----C-AATAGT--A--T---AACGT--AATCT-GAG-TCCAA---AAA----AC--ATA---TAACACAAATg
gi|28 : tcattatgactttcc-G-T-AA-C-AAA-GT--A--TC-AAGCGT--AACCA-TAG-TCCAA--AAA-----AC--ATG---T-Aataacaatataaac
gi|3 : --A--TC-AAACGT--AATCA-TAG-TCCAA--AAAATACAACCCACA---T-TCA-AAATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GA---------------------AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGC---------TGC-TAA-CC---G-G--GCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--TAAA-G---TAAACGGGATTACCCGT-CGTAAAATCTAGT------------------------------ATGAAA----ATCAGTCAACATATGACTAATTATATAATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAAGAATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGTAGTTGG-CCTC----GCTTT--AAAAAATC--A----TCATAAGCATG-GA--ATGC--C-CTT--GC-A-TA-T-CGAA-TCAAATAAGAGATC-ACA-C-ACACCATAAGCAA----GT--GAT-AGT-CGTACATT--GC---T---AC-AT--AA-AAGAAAAG-TGACACAATTGCA-AAGTCAAG--T---CATCA----CG--T-TTATTATAT--AATGGT--AGTCTGT---CAG-TCTG----CATT-AGA-GTCAAATG----T----TAATTAAAATAATCC--AA--------ATAGTAAAGCACATCTGTCA--TATTCTGTGGG----TGTCCTTTA-T--TTC-ATG-TCGTCAGG--ATATATCAAAGGT-CATAAATTCGGTGAAactgcatgtaa
gi|30 : TTATAACCCTGC-AA--CA-TCAAC--T-GTTTG--------GTTGATACTTTG-ctttaatcaatg
gi|31 : CAACACATGACT---TA-GTGATAATTTGTAATC
gi|33 : GTCATTATATCGAC-CGTAGAATTCG-CGAAAagtaatac
gi|34 : GTAG-TCGA-A-A--TAAA-G---TAAACAGGATTACC
gi|4 : GGTG---AA-A-T-AA-C-GTC-GT--AAATC-AATC-T--AAT-A--AA-TCCTATGAGGA----AT--ACAAATT-ATA-ACA---------GTTG--GG-CAAACA-CGGACC-CT--GAGTGGGATCAG----GTGCCCTGGGTGGGA-TCAG-GT----GCCTAG--GA-----GG-A-GT-AAGCA--TACCC-TGC-CGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCTTTTC-TCTTTA-A--CAA--G---TAAACGGAATAATCCGTACGCTAAATC-AGTATACATATAGAACGGCCCAA--CAATTGGTATGTAA-CCGGTCAAACAACACTTGACC---CA-CAGACAGGTTGTACTGGCAAA--CTAGATCGTT-------------------------ATAATGACCATAAA--AG-TTTGCGA-AA---TGA-TA--CA-TCAAC--T-TGTTT--------GTCAGTAGCCTG-CCTC----GATTT--CAAAA--CTGA----TCATACGCA-G-AA-CAGGT--T-TTT--GC-ATTA-T-CGAA-TCAGTTGAGA
gi|5 : agaTA--TGG-ATA---CA-AA-AA--GGCG---AA-G-TTAA-C-ATT-GT--G--TC-AAACGT--AATCA-TAA-TCCAA--AAAA-----C--ATA---T-ACA-AAATC-GAGT--GTAG--GG--AA-CA-CGGACCTCC--GAC---GA--AA----GTGA---AGGCAGGA-ACAG-GT----GCCATG--GA-----GG-A-AT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-ACCTGTAG-TCGA-A----TAAA-G---TAAACGAGATTACCCGT-AGTTAAATCTAGTAGAAAAATA--ACAGTCTAA--CAAAGGGTATAGAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTC--TATAGCGAC-CGTAGAATTTG-TGAAATGATGACTTTAAACGAGATTCGTtaacctcagcatgcgtcatcaatgtgtcaaaaataaaaattaatcgttattaaatat
gi|6 : ttttgtttacctgaggtttgttagatcgagtaaactattttgaagtttctgttcaagaaatgctattaagtgtgttaactaaA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TT-AAACGT--AATCA-TAG-TCCAA--AAA------C--ACA---T-ACA-ATATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GAC---AA--AA----GCAA---AGGCAGGA-TCAG-GT----GTCATG--GA-----GG-A-GT-AAGCA--TCCAC-TGC-TCA-CC---G-G--TCAC-ACTC-GCC-G-TGA-GCCCTTAG-TCGA-A-A--TAAA-G---TAAACGG-ATTACCCGT-AATCATATCTAGTAGAAAAATG--ACA----------AAGGGTATGAAA-CAAATCAGTCAACATATGACC---TA-GTTATAATTTGTAGTCGCAAA--TAAGATCATTATAGCGAC-CGTGGAATTTG-CGTAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AG--CA-TCAAC--T-
gi|7 : gaaacgagcattgtctttacagtggaggattctaaatcttttacgtcattattatcA---TCTAA-AA-TGGCG---AA-GGT-AA-C-AAT-GT--T--TA-GAACGT--AATCAATAG-ACCCA--AACA----AC--ACA---T-ACA-A--------T--GTAG--GG-CAA-CT-CGGACCTCC---AC---AA--AA----GCGA---A--CAGGAATCAG-AT----GTCATGAAGA-----GG-AAGT-AAGCA--TCGTCCTGC--GA-CC---GCG--TCACGACTC-GCCCG-TGA-GCC-GTAG-TCGA-A-AAACAAAAG---TAAACGAGGTTACCCGT-CGTCAAATCTAGTACGACAAAA--ACAGTCTGAATCAAAGGGTATGAAGGCAAATCAGTCAACATATGACT---TG-ATGGTAATTTGTAATCGCAAA--CAAAGTCATT-TAGCGAC-CGTAGAATTTG-CGAAATGAT-ACTTTGA
gi|8 : cctacacaacttggtgtttcagtggttgatatggcacggttatgtattagacgttttctttctctctgcAAGGGAGCACAATTAGTGCCC-ATAAG-AATAACAACAAATTG-TTGGAAAACTTGGTCTCTAAAGACTACAAAAATATTATCTATTAGAAAACCCAACAACTGGTATTCTACATAATACTCCCTACTTCAGA-TAGCTC-TTGC-TACGATTCGAAGCGCGTGGCCTCTCGGAATTAGAACAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCTTCTTTGTTCCTCCTCAACGACTTAGAAATTTTCGTATCTTTCGGGGGGACAGTTTTGTGTTTAAAAACTAAGTTATCTATAATCTGGAAAGAAGCGGCTAGATAGTTATCGGTTT-ATTGTAAGAATCG-TGTAATAAA-TGTGGAGAAAATCGTGACGTTTTGATGCAATCAATTTt
gi|9 : CCCTGCCAA--CA-ACAAC--T-TGTCT--------GTAAGTAGCTTG-CCTC----GATTC--AAAAC--T-GA----TCATACGCA-G-AA-CAAGC--T-CTT--GC-G-TA-T-CGAA-T-AGTTGAGAGA-C--TA-C-ACACCATATGCAG----GT--GAT-GAT-GGAATATT--GC---T---AC-ATGAAATATGCGAAGTGA--ACGATTGGAGAAGCTGAAATT---CGTTC----CG--G-TTGT--CAT--AAA-GTTGAGT-AGT---TAGTTTTG-CCTCGTT-AAT-GTC-AATGTTTTT----CAATTAAAAT-ATCC--AA--------GTA-CGAAGCAGACATGGAAGGGACTCTGT-GGGTTATGTCTCTCACTACTTCAAAGTT--TCGGaggga
blockSeqs : CAAATGCAT T AA T CCT T C CGT T G T A G TA TG AA CC TA A C A TG ATACAA CC AAT A C TCA CT AA T A A CC TGGG TC CGTA CCT A C CCTC AA TTACG G A C AT C C C TGC C GT G G C T C TA C T AAA T GTT AC TACATATAGA C T AT A G AAT T AC G A TA G C T A C AT C GT G TCCAAAAC C . CCGA CA AAACTTT A T . A A TTC AT TG A G A A T T A ACC T TGAG TG C G T T TA AAAT CA T A AC G G ATGAACATCAATCCCGTGTTTTTA G TG C ATT A CCT T T C TGATA A A CC TTCCGCCT G G TG TT GG G GTTA CTAC A A CA A CG T GC T G AGA C T TTTTTTTTTTTTTTTTTTT C A TG C A . GA T TGG C A A T G A C T GTATTCTACA TCCCTA G G CTTGCTACGATTCGAAGCGCGTGGCCTCTC CAA CGTTATTC AC TA TT T T CC T T TC C G GA A G C A GA GG GGTTTAT T T A G A G T T C T A A TTAA T C
blockSeqs : . . . . . T . . . . . A . . C . . . C . AA . . . . TC . . T . . . G . . C . . . . . . . . . . . . . . C . . . G . CG . . GA A . A CGGAAATG C T . A . . . . A . TA . T C T . . . . . . C . . . CTGA G . . . A CT . AT . . . C T . . GTT T . . . . C C . TGCC G T T . G . TTACCACGCTTTCATATAC . . . . T AC . . T TTTTT G . . . . T CT TC . . . TT . G TA . . G . . . TTT . T . C T AA A A . CA . TG A T T T T . C T CTT CAA . . G . . TCTAG . . . . . . T
blockSeqs : . . . . . . . . . T . . T . . . C . AA . . . . TC . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . CG . . T . . T GAAAAATA C C . A . . . . A . TA . C T T . . . . . . T . . . ATCA T . . . C T . G . . . A C . . AC A . . . . T T . T G . T . G . TCATCACGTTTATTATAT . . . . . C . . C T T . . . . C AT GA . . . TT . G T . . A . . . . . T . . . CA . T . GT . AC T T A
blockSeqs : . . . . . . . . . T . . T . . . C . AA . . . . GC . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . CG . . C . . C GAAAAATG C T . A . . . . A . TA . C C T . . . . . . T . . . TCGA C . . . T C . G . . . C C . . TT A . . . . T C . T A . G . A . ATTCGTTCCGGTTGTCAT . . . . . C . . C T T . . . . G G G . . . T . . AG .
blockSeqs : . . . . . . . . . G . . T . . . G . AA . . . . TC . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . TT . . A . . C CGACAAAA C T . A . . . . A . TG . C C T . . . . . . T . . . ATCA G . . . A T . A . . . A T . . AC T . . . . T T . T A . A . G . CCATAT . . . . . . . . . . . T
blockSeqs : . . . . . . . . T . . C . . . A . AA . . . . TC . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . TG . . A . . A TATCAAG . . . . . . . . A . TA . . . . . . . . . . C . . . CTGA G . . . T C . C . . . C A . . AC A . . . . A . . T A . T . . .
blockSeqs : . . . . . . . . A . . C . . . A . A . . . . TC . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . CT . . A . . A CGAAT . . . . . . . . . . . . . . . . . . A . . . AAA G . . . G T . A . . . C T . . C T . . . . . . .
blockSeqs : . . . . . . . C . . C . . . A . A . . . . T . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . C . . A . . C . . . . . . . . . . . . . . . TGA . . . . A T . G . . . C T . . . . . . .
blockSeqs : . . . . . . T . . C . . . T . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . A . . . . . . . . . .
blockSeqs : . . . . . A . . T . . . A . A . . . . . . . . . . G . . A . .
blockSeqs : . . . . . T . . A . . . A . . . . . . . . . . .
blockSeqs : . . . . . . C . . . . .
blockSeqCons : TA NTGA****** CT** GA*
originalCons : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTG-CCTC----GATTT--AAAAA--C-GA----TCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATA-G-AATACCAACAGATTG-TTG-AAGACNTGGTCTCCAAAGACTACANAAATATTATCTATNAGAAA-CCCAAGCATTG---CTCT---TAATAT--CNTACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
finalCons : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTG-CCTC----GATTT--AAAAANTGA------TCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTGAGAGA-C-ATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTACT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATAGA-AATACCAACAGATTG-TTG-AAGACNTGGTCTCCAAAGACTACANAAATATTATCTATNAGAAA-CCCAAGCATTG---CTCT---TAATAT--CNTACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CATTTTTTCTTAGGAACACGCATCGATTAATATTTATAATATCTGAATAGAGGTCTTCGTTTTATATTTTATCGATGAAGATGATCGTTAAGTTAATATATCAAGAAATATGTGATGGAAAAGGAAAGATCGAGTACTGTTATTGATGACAGTTCCCAAACTTTTAGAA
Unaligned ( gi|22 ): AAAGCTTTTCACAAATTCTTCCGGGCACGAATAAGAAGCAGGCGGCTTACAACTAGCAACAATTTGTGCTCATAAGAATGCCTGGAGACTGTTGTAAGACCCGATAACAAATACAAATGTTGTCCATAAGGAACCCGAGTATTGCT
Unaligned ( gi|27 ): TAAATCTCATAAAGCCTATAAGGAACACAAATTACGAGTTGGGGAAGCATGAATCCCTGAATA
Unaligned ( gi|29 ): TAAATCCTATAAGGAATACAAATGATAAAAATGGGCAAACATGGATCC
Unaligned ( gi|32 ): TGACAAAATATGTATCTTGTTTCCCAAGAC
Alignments
lowQualScore : 333333333 11 1 111 111 111111 111 11111 1111111111 11111111 1111 1111111 1 33333333333333333333333333333333 111 1 1111 222222222 11 22222222 11 1111 2222 222 1 11 11 1 1 333 1 7777777777777777777 3333 1 1 3333333333 222222 1 77777777777777777777777777777777 222 33333333 11 11 11 1 11 1 1 11 1 11 1 1 11 11 33333333 1 1 1 1 2222 1
lowQualScore : 888888888 1 88 3 111 5 4 111 3 3 3 3 3 44 44 44 33 44 3 3 1 44 444444 44 555 3 3 444 55 55 7 3 3 55 7777 55 8888 111 4 4 9999 66 11111 4 4 4 55 4 4 4 777 4 99 4 4 4 8 4 44 3 3 7777 6 555 0 44 3333333333 1 3 66 4 4 777 4 0 66 3 4 22 4 6 0 1 1 5 66 5 66 5 88888888 1 4 9999 0 999999 666 2 4 4 4 1 7777 66 666 8 4 4 2 4 1 4 1111 2 9999 66 4 5 2 5 66 1111111 77 00 1 1 0 77 1 5 0 0 11111111111111111111111111111111 6 99 6 111 3 4444 0 6 6 1 0 555555555 1 0 8 11 99999999 8 1 66 11 11 6 4444 0000 8 0 888 44 0 33 1 0 33 0 0 555 0 3 7777777777777777777 2 9 22 8 1 8 0 2222 0 0 0 3 0 1 7 1 3 6 7 0000000000 444444 6 3 44444444444444444444444444444444 111 55555555 88 88 88 1 5 77 5 5 88 5 1 88 1 5 1 2 88 88 44444444 3 7 3 6 3 0 3 7 1 1 1 1 1 4444 5 1
lowQualScore : ......... . .. . ... . . ... . . . . . .. .. .. .. .. . . . .. ...... .. ... . . ... .. .. . . . .. .... .. .... ... . . .... .. ..... . . . .. . . . ... . .. . . . . . .. . . .... . ... . .. .......... . . .. . . ... . . .. . . .. . . . . . . .. . .. . ........ . . .... . ...... ... . . . . . .... .. ... . . . . . . . .... . .... .. . . . . .. ....... .. .. . . . .. . . . . ................................ . .. . ... . .... . . . . . ......... . . . .. ........ . . .. .. .. . .... .... . . ... .. . .. . . .. . . ... . . ................... . . .. . . . . .... . . . . . . . . . . . .......... ...... . . ................................ ... ........ .. .. .. . . .. . . .. . . .. . . . . .. .. ........ . . . . . . . . . . . . . .... . .
lowQualScore : 000000000 0 33 3 777 0 4 000 3 3 3 3 3 33 22 22 88 22 1 1 5 22 888888 22 444 1 3 000 00 00 3 6 6 55 5555 55 5555 000 0 0 4444 11 11111 4 4 4 55 0 0 0 000 0 55 0 0 0 0 0 22 3 3 2222 7 888 7 66 6666666666 1 4 11 7 4 000 0 8 99 6 4 44 4 6 3 7 7 0 99 0 99 0 11111111 1 0 4444 7 222222 444 9 4 4 4 0 7777 11 666 0 0 0 5 0 9 4 7777 6 4444 11 4 0 2 4 99 0000000 11 66 4 0 1 99 7 7 7 4 99999999999999999999999999999999 7 22 7 777 3 2222 7 7 7 0 8 000000000 0 8 0 00 00000000 0 0 66 66 00 7 2222 5555 0 8 000 00 0 88 2 2 88 0 0 000 0 2 5555555555555555555 5 8 22 8 2 0 8 2222 2 8 2 5 2 0 3 0 3 7 3 7777777777 000000 7 3 77777777777777777777777777777777 000 00000000 00 55 55 0 5 55 5 5 00 0 0 00 0 0 0 0 33 33 33333333 3 3 3 7 3 7 3 3 0 0 0 0 0 5555 5 0
consensus : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTG-CCTC----GATTT--A---AAAACTGATCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTG-AGAGA-CATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTATT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATAGAAATACCAACAGATTGTT-G-AAGACNTGGTCTCCAAAGACTACANAAATATTATCTATNAGAAA-CCCAAGCATTG---CTCT---TAATAT--CNTACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
Reference ( family-406 ) : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACTCAAATGCATTATGGTNTG--TGG-ATA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAN-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---GA--AA----GCGA---AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--CAAA-G---TAAACGGGATTACCCGT-CGTCAAATCTAGTACGAAAATG--ACAGTCTAA--CAAAGGGTATGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTCAGTAGCTTG-CCTC----GATTT--A---AAAANTGATCATACGCA-G-AA-CANGC--C-CTT--GC-G-TA-T-CGAA-TCAGTTG-AGAGA-CATA-C-ACACCATANGCAG----GT--GAT-AAT-GGTACATT--GC---T---AC-GTAGAA-ANGGAAAGTTG--ACGATTGCA-AAGTCGAG--T---CATCA----CG--T-TTAT--TAT--AAT-GT--AGT-TGT---CAG-TCTG-C--CGTT-AGA-GTCAAATG----T----CAANTAAAAT-ATCC--AA--------ATA-CGAAGCANATNTGTNA--GATTCTGT-GG----TGTCCTTTACT--TTC-GAGTTCGTCGGGA-ATATATCAAATGTACAT-AATT--GTGAAAATTATGATTGTTAATTGATAAGACATCGTCT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAG---TTTTT-TTGTT-------------------TTTATCCCGTAATAGTTTTTGAACGAATTCTGCTTCGTATGAATATAAAAATAAGTCTGCCAATAAGGGGGCACAATTAGTGCCC-ATAGAAATACCAACAGATTGTT-G-AAGACNTGGTCTCCAAAGACTACANAAATATTATCTATNAGAAA-CCCAAGCATTG---CTCT---TAATAT--CNTACTTCAGAGTA-CTC-T-GCGTA-GATTC-AGG---GTGGCCTCTCGGAATCAGAGCAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCNTCTTTGTTCCTCCTCAACGACTCAGAAACTTTCGTATCTTTCGGGNGGACNGTTTTGTGTTCAAAAANCAAGTTATCTATAATCTG--AAAAAGC--CTAGATTTTAATC--TCT-G-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCGT-ACGTTTTGATGCAGTCAATTTTAGAAAANTCTNGTGACTTNAGGTTNTCCANAAGCTCTTTAATTAGAGTTTTTGAGAATCCACATCTGATTGACACCACTTNTGGAATATGTAGT
gi|1 : TGACTTTGACTTTGCAATCGTAAATGTTTCCCTTTTATGTAGTAATATACCACT---------TATGGTGTG--TAG-ATA---TGTAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TC-AAACGT--AATCA-TAG-TCCAA--AAAA----AC--ACA---T-GCA-AATAC-GGCT--GTAA--GG-CAA-TA-CGCACCTTC--GGC---GA--AA----GCAA---CGGCACTA-TCAG-CA----GCCAGG--GA-----GG-A-GT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-A-TGA-GCCTGTAG-TCGA-A-A--CAAA-G---TAAACGGGGTTACCAGT-CGTCAAATCTAGTATGAAAATG--ACAGTCTAA--CAAAGGGTAGGAAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CGAGGTCATTATAGCGA--------ATTTG-CGGAATGGTGACTTTAAA---AATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGT-GTTTGGCTTC----GCTTT--A---AAAA---ATCATACGCA-ATGA-CATGC--C-CTT--GC-G-TAAT-CGAA-TCAACTG-AGAGA-CATA-C-ACACCATAAGCAG----GT--GAT-AGT-GGTACATT--AC---T---AC-AGAAAA-AAAGAAAGTTG--ACAATTGCA-AAGTCAAA--G---CATCA----CC--T-TTAT--CTTTGAAT-GT--AGT-TGT---CAG-TCTC-C--TATT-AGA-GCCAA-TA----T----CAAGTAAAAT-ATCC--AA--------ATA-TGAAGCACATCTGTCA--GATTCTGT-GG----TGTCCTTTATT--TTC-AAGTTCGTCAGGATATATATCAAATGGACAT-AATT--GTGAAAATTATGAATGTTAATTAATAAGACATCGTCT--ATAT-ACCTA-TAAGTAAGGTTGAAGGACACGGCAAG---TTTTT-T-GTT-------------------TTTATCCCGTAATAGTTTCTGAACAAATTCTGCTTCGTGTGAATTTAAAATTAAGTCTGCCAATAAGGGGGCGCAATTAGTGCCCGATAGAA-TACCAACAGATTGT-------AC---------AAAGACTACATAAATAT-ATCTATAAGAAA-CC-AAGCAT-G---CTCT---TAATAT--CTT-CTTCAGAGTA-CT--T-GTGT------------------------GGAATCAGAG---TGG--------TT--TCTG--ACAAAAT--ATGTATCTT-GTT--TCC-CAATGAC-CAGAAACTT--GTAT-TTTCGGGTG--CCGTTTT-TGTTCAAAAAGCAA-TTATCAGTTATCTG--AAAAAGC--CTAGATTTTAATT--T-T-G-TG-AGGAATTGTTGT-ATAAAGTGTGGAG-AAATTAT-ACGTTT-GATGCAGTCAATTTTAGAAAAATCTAGTGACTTGAAGTTTTCTATAAGCTCT----TTAGAGTTTTTGAGAATCCACATC-GATTGACACCACTTATGGAATATGTAGT
gi|10 : AAACGTGACT-GTTGAACCCCTGC-AAATCACTCAACGTTGTTCTGTCCAAAACGTCCGTAGTTTG-CCTCCCGAGATATCAA---AAAACTGATCATAT-CA-G-AAACAAGTTTC-TTC--GT-G-TAAT-TGAAATAAGTTG-AGA-A-CATA-CCACACCATATGCAGTGAGGTTGGAA-AAT-GCTA-ATTTAGCAAAT---AT-GGAGAA-AAAGAA--TTG--AC-AGTGCA-AG--CGAAA-TGAACATCAATCCCG--TGTTTT--TA---AAT-TT--GGA-TGTATTCAGATTTGAC--CGTTTAGATGCCAAATG----TGATACATATATAAT-ATCCCCAATTCCGCCTATG-CGAAG--GATG---GA--GACTCTGT-GG----TGTCGTTTATT--Tggaacagtgcatagaggtaaccgccatatcaacaagtaaagaaggaaggttaaaccgttgattcttatcagaaattgtcatcgtcaaacataaacacagataacagacagattcatgagggaaatatacttcaaagtttaaacaaaaataagag
gi|11 : ttttaaAGTCATCGTAG--ATAT-ATCGAGTATGTCGAATTAAAGGCTACCACTAGAGATTTCC-CTCTT-------------------CTCAT---GTAGAAGCTTTTGAATGAATTCTGCTTCGTAAGAATATAAAAACGGACCAGCTAACAAAGGAGCACAGTTCGTGCCC-ATGGAAATTCCAGCGGACTGTTTG-AAGACCTGATCACCAAAAACTACAAAGATATTGTCAATGAGGAA-CTCCAGCATTG---CT-T---TAACAT--CA-ACTTCAGAGTA-CTTGT-GCGTA-GATTC-AGG---GTGGc
gi|12 : ttagacagcatgttacccaatggcagaccatactggcaaactaaatcgttTAATAG-TAGCG---AA-G-T-AA-C-AAA-GT--A--TCCAAACGT--A-TCA-TAGCTCCAC--AAA----------CA---T-ACA-AAAT--GAGT--GTAGAAGGTCAA-CA-CGGACCTTC--GAG---GA--AA----GCGAC--AGACAGGT-ACAG-GT----GTCAGT--GATTACGGG-A-GTCAAGCA----CTC-TGC-TGACCC---G-G--TCAC-ACCCGGCC-G-TGA-TCAC-TGGCTCGA-AGA--CAAA-AGTTTAAACAGtggtcatcagaa
gi|13 : gaaaatttagttagtgcgtttttaaaaactattctctaaatttttT-GG----TGTTCTTTA-T--TTC-GAGTTCGTCGG-A-ATGTATTAAATGCACTT-AATT--ATGAAAATTATCATTGTTAAGTGATAAGGCATCATCTGCATATTATCTA-TATGTAAGGTTGAAGAACACGACAAG---TTTTTCTTGTT-------------------TTTATCCCGTAA--GTTTTTGAAAAAATT-TGCTTCGTATCGATATTAAAATAAGTCTGCTAATAAGGGGGCACAATTAGTGCCC-ATACAAATACCAACAGATTGTA-C-AAGACATGGTCTCCAAAGACTACATAAATaggagatttactcctctaatcccttaacaaatact
gi|14 : ATAA-AACTGGCGCGTAATG-T-AAAC-AAT-GCTGA--TC-AATTGTTAAATCA-TAG-TCCCC--AAAA-----C--ATA---A-ACA-AAATCAGAGTCTGTAG--TGTCAA-CAACGGACCTCCCCGAC---AA--AACGTAGCGA---AGG-AGGA-TCAGCGTCCTCGCTATG--AA-----GGGA-GT-ACACAATTTCTC-TGCCTGA-TCTGCG-GC-TCAC-ACCC-GCC-GTTAA-GCCC-TAG-TC-A-A-T--TAAATG---TAAACgctt
gi|15 : agacta--------GTCAGTAACCTG-TCTC----GATTT--G---AAAAAAAA--ATACACA-G-AA-CAATA--T-TTTATGC-G-TA-T-C-AA-TCGGTTG-ACGGA-CAT--------------CAG----GC--GAT-AAT-GG---ATT--GC---TGCCAC-GTAAAT-ATGGGAAGCTG--ATGATGGAG-ACGCCGAA--T---CA
gi|16 : aattCA--TCCCT-AAT-TGA-CC---G-GGTCCAT-ATC--GCC-GGTGACGCCTATAC-TTGA-A-C--CAG--G---TACACACAATAATCTGT-AGTTAAAATCAATATATCAA-G--A-AGCC-AA--CAACTGATA-GCAA-CACGTC---TAACAT-TGACC---CA-AT-ATATGTTGTA-TTGCAAAACCAA--TCGCTGTAACGACACG---AATTTGGCGAAATGAatattttttgttgcaaattttagtaggtgaattgctccaaaaggtaacgcctacatgtatgttcaataaattaacc
gi|17 : agcAATTATCTATAATCTG--AAAAAGC--CTAGAATTCAATC--TCTAG-TG-AAGAATCGTTGT-ATAAAGTGTGGAG-AAATCAT-ACGTTTTGATGCAGTCAATTTTAGAAAATTCTCGTGATTTTAGGTTATCCAAAAGCTCTTTAATTAGAATTTTTAAGAATCCACATCTGATTGACACCACTTCTAGAATATGTAGTaaatcgac
gi|18 : TAGCCTG-C-TC----GGTTA--AGAAAAAACTTTTAATACGCA-G-AT-CACGT--CTCTT--CC-A-TA-T-CGAA-TAAGTGGGAGACA--ATGTT-ACACTATATGCAG----AT--AATCAATGGGCATATT--G
gi|2 : ttgtaagttA-TGGCG---AA-G-T-GA-C-AAT-GT--A--TT-GAATGT--AATAA-GAG-TCCCA--AAAA-----C--GCA---T-ACA-AAATC-AAGT--GTAG--GG-CAA-CA-CAGCCCTCT--GAC---AA--AA----GCGA---AGGCAGGG-TCAG-GT----GCCATG--GA-----AG-T-GT-AAGCA--TCCTA-TGC-TGA-CC---G-G--TCTC-AAAC-GCC-G-TGA-GCCCGTAG-TCAA-A-A--TAAA-G---TTAACGTTGTTGTCAGC-TTTCAAATCCAGTACGGAAATG--ACAGTCTAA--CAA-GGATATGAAA-CAAATAAGTCAACACATGACT---TA-GTGATCATTTGTAATCGTAAA--CATGTTCATTATAGCGAC-CGTAGAATTTG-CGAAATGATGACTTTTAATGGGATCTGTTATAACCCTGC-AC--CA-TCCAC--T-TTTTG--------GATAATAGTTGG-CCTC----ACTTT--A---AAAAATCATCATACTCA-T-GA-CATGC--C-CTT--GT-C-TT-TGCG-A-TCAACTA-AGAGG-CATA-C-ACACCATAAGCAT----GT--GAT-AGT-GGTGCATT--AC---T---AT-ATAGAATATGGAGAATTG--ATGATTGCT-AAGTCT-G--C---CA-------------------TAT--AAT-GT--AGC-TGT---CAG-TCTG-C--CAAT-AGA-GT-AAATA----T----TAAGT-AAAT-ATCA--AA--------ATA-TGAAACATATTGGTTA--GGTTCTGT-GG----TGTCCTATA-T--TTC-GAGTTCGTCGGG--ATATACCAAATGTACAT-AATT--GTGAAAAGTATGATTGGTAATTGATAAGACATCGTTT--ATAT-ACCTA-TATGTAAGGTTGAAGGACACGGCAAGTTTTTTTT-TTGTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGCAATAGTTTTTTTACAAAATATGCATCGTTTGAATACAAAAATAAATTTGCCAATAAGGGGGCACAATTAGTGCCC-ATGGTAATATCAACAGATTGTgtctcatgaatacggcggagtgcttgagcgatgtgaaggctaaaggtccataacggtggtagtta
gi|20 : ct-TA-T-CGAA-TAAACTG-GAAAA-TAT--C-ACACAGTAAGCAG----GC--GAT-TAT-G-TATATT--GC---T---ACCATAGAA-AGAGAAAGTTC--ACGATTGCA-AGTTCAAG--T---TACCA----CGCTT-TCATA-TAC--AAT-GC--AAT-TGT---TAC-CCTA-C--CATT-AGA-GTTAA
gi|21 : cactttaaataaaattaagatgatA-A-T-AA-C-AAG-GT--A--TT-AAACGT--AGTCA-TAG-TCCCA--AAAA----AT--ACA---C-ACA-AAATC-GAGT--GTAG--GG-CAA-CA-CGGACCTCC--GAC---AA--AA----GTGA---AGGTAGGA-TCAG-tc
gi|23 : agcattcatatttcttacattgtataaggataatgttttatcttctttttatctatacCAAATGCATTATAATTTGAATGGTATACCTTATAA-AT-TGGCG---AA-G-T-AA-AGAAT-GT--G--TT-CAACGT--AATCA-TAG-TCCGG--AAAA----AT--ATA---C-ACA-AAGGC-GAGT--GGAG--GG-AAA-CA-C
gi|24 : gCCGTAG-TCGA-A-A--CAAA-A---TAAACGGGTTTACTCTT-CATCAAATCTAGTACG--AAT------GTCTAA--CAGAGGGTATGACA-TAACTCAGTCAACATATGACT---TA-GTGAT
gi|25 : GTAGCTTA-CCTC----GATTT--A---AAAATCGATCATACCTA-G-AA-CAAGC--T-TTT--CCTG-CA-T-CGAA-TCAGTTG-AGAAA-CATT-T-ACCATATATGCGA----GT--GAT-
gi|26 : A---TATAA-AA-TGGCTT--AA-G-T----C-AATAGT--A--T---AACGT--AATCT-GAG-TCCAA---AAA----AC--ATA---TAACACAAATg
gi|28 : tcattatgactttcc-G-T-AA-C-AAA-GT--A--TC-AAGCGT--AACCA-TAG-TCCAA--AAA-----AC--ATG---T-Aataacaatataaac
gi|3 : --A--TC-AAACGT--AATCA-TAG-TCCAA--AAAATACAACCCACA---T-TCA-AAATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GA---------------------AGGCAGGA-TCAG-GT----GCCATG--GA-----GG-A-GT-AAGC---------TGC-TAA-CC---G-G--GCAC-ACCC-GCC-G-TGA-GCCCGTAG-TCGA-A-A--TAAA-G---TAAACGGGATTACCCGT-CGTAAAATCTAGT------------------------------ATGAAA----ATCAGTCAACATATGACTAATTATATAATAATTTGTAATCGCAAA--CAAGGTCATTATAGCGAC-CGTAGAATTTG-CGAAAGAATGACTTTAAACGAGATTCGTTATAACCCTGC-AA--CA-TCAAC--T-TTTTG--------GTTAGTAGTTGG-CCTC----GCTTT--A---AAAAATCATCATAAGCATG-GA--ATGC--C-CTT--GC-A-TA-T-CGAA-TCAAATA-AGAGATCACA-C-ACACCATAAGCAA----GT--GAT-AGT-CGTACATT--GC---T---AC-AT--AA-AAGAAAAG-TGACACAATTGCA-AAGTCAAG--T---CATCA----CG--T-TTATTATAT--AATGGT--AGTCTGT---CAG-TCTG----CATT-AGA-GTCAAATG----T----TAATTAAAATAATCC--AA--------ATAGTAAAGCACATCTGTCA--TATTCTGTGGG----TGTCCTTTA-T--TTC-ATG-TCGTCAGG--ATATATCAAAGGT-CATAAATTCGGTGAAactgcatgtaa
gi|30 : TTATAACCCTGC-AA--CA-TCAAC--T-GTTTG--------GTTGATACTTTG-ctttaatcaatg
gi|31 : CAACACATGACT---TA-GTGATAATTTGTAATC
gi|33 : GTCATTATATCGAC-CGTAGAATTCG-CGAAAagtaatac
gi|34 : GTAG-TCGA-A-A--TAAA-G---TAAACAGGATTACC
gi|4 : GGTG---AA-A-T-AA-C-GTC-GT--AAATC-AATC-T--AAT-A--AA-TCCTATGAGGA----AT--ACAAATT-ATA-ACA---------GTTG--GG-CAAACA-CGGACC-CT--GAGTGGGATCAG----GTGCCCTGGGTGGGA-TCAG-GT----GCCTAG--GA-----GG-A-GT-AAGCA--TACCC-TGC-CGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-GCCTTTTC-TCTTTA-A--CAA--G---TAAACGGAATAATCCGTACGCTAAATC-AGTATACATATAGAACGGCCCAA--CAATTGGTATGTAA-CCGGTCAAACAACACTTGACC---CA-CAGACAGGTTGTACTGGCAAA--CTAGATCGTT-------------------------ATAATGACCATAAA--AG-TTTGCGA-AA---TGA-TA--CA-TCAAC--T-TGTTT--------GTCAGTAGCCTG-CCTC----GATTT--C---AAAACTGATCATACGCA-G-AA-CAGGT--T-TTT--GC-ATTA-T-CGAA-TCAGTTG-AGA
gi|5 : agaTA--TGG-ATA---CA-AA-AA--GGCG---AA-G-TTAA-C-ATT-GT--G--TC-AAACGT--AATCA-TAA-TCCAA--AAAA-----C--ATA---T-ACA-AAATC-GAGT--GTAG--GG--AA-CA-CGGACCTCC--GAC---GA--AA----GTGA---AGGCAGGA-ACAG-GT----GCCATG--GA-----GG-A-AT-AAGCA--TCCTC-TGC-TGA-CC---G-G--TCAC-ACCC-GCC-G-TGA-ACCTGTAG-TCGA-A----TAAA-G---TAAACGAGATTACCCGT-AGTTAAATCTAGTAGAAAAATA--ACAGTCTAA--CAAAGGGTATAGAA-CAAATCAGTCAACATATGACT---TA-GTGATAATTTGTAATCGCAAA--CAAGGTC--TATAGCGAC-CGTAGAATTTG-TGAAATGATGACTTTAAACGAGATTCGTtaacctcagcatgcgtcatcaatgtgtcaaaaataaaaattaatcgttattaaatat
gi|6 : ttttgtttacctgaggtttgttagatcgagtaaactattttgaagtttctgttcaagaaatgctattaagtgtgttaactaaA---TATAA-AA-TGGCG---AA-G-T-AA-C-AAA-GT--A--TT-AAACGT--AATCA-TAG-TCCAA--AAA------C--ACA---T-ACA-ATATC-GAGT--GTAG--GG-CAA-CA-CAGACCTTC--GAC---AA--AA----GCAA---AGGCAGGA-TCAG-GT----GTCATG--GA-----GG-A-GT-AAGCA--TCCAC-TGC-TCA-CC---G-G--TCAC-ACTC-GCC-G-TGA-GCCCTTAG-TCGA-A-A--TAAA-G---TAAACGG-ATTACCCGT-AATCATATCTAGTAGAAAAATG--ACA----------AAGGGTATGAAA-CAAATCAGTCAACATATGACC---TA-GTTATAATTTGTAGTCGCAAA--TAAGATCATTATAGCGAC-CGTGGAATTTG-CGTAATGATGACTTTAAACGAGATTCGTTATAACCCTGC-AG--CA-TCAAC--T-
gi|7 : gaaacgagcattgtctttacagtggaggattctaaatcttttacgtcattattatcA---TCTAA-AA-TGGCG---AA-GGT-AA-C-AAT-GT--T--TA-GAACGT--AATCAATAG-ACCCA--AACA----AC--ACA---T-ACA-A--------T--GTAG--GG-CAA-CT-CGGACCTCC---AC---AA--AA----GCGA---A--CAGGAATCAG-AT----GTCATGAAGA-----GG-AAGT-AAGCA--TCGTCCTGC--GA-CC---GCG--TCACGACTC-GCCCG-TGA-GCC-GTAG-TCGA-A-AAACAAAAG---TAAACGAGGTTACCCGT-CGTCAAATCTAGTACGACAAAA--ACAGTCTGAATCAAAGGGTATGAAGGCAAATCAGTCAACATATGACT---TG-ATGGTAATTTGTAATCGCAAA--CAAAGTCATT-TAGCGAC-CGTAGAATTTG-CGAAATGAT-ACTTTGA
gi|8 : cctacacaacttggtgtttcagtggttgatatggcacggttatgtattagacgttttctttctctctgcAAGGGAGCACAATTAGTGCCC-ATAAGAATAACAACAAATTGTT-GGAAAACTTGGTCTCTAAAGACTACAAAAATATTATCTATTAGAAAACCCAACAACTGGTATTCTACATAATACTCCCTACTTCAGA-TAGCTC-TTGC-TACGATTCGAAGCGCGTGGCCTCTCGGAATTAGAACAATGGCGTTATTCTTACTCTGTAACAAAATTTATGCTTCTTTGTTCCTCCTCAACGACTTAGAAATTTTCGTATCTTTCGGGGGGACAGTTTTGTGTTTAAAAACTAAGTTATCTATAATCTGGAAAGAAGCGGCTAGATAGTTATCGGTTT-ATTGTAAGAATCG-TGTAATAAA-TGTGGAGAAAATCGTGACGTTTTGATGCAATCAATTTt
gi|9 : CCCTGCCAA--CA-ACAAC--T-TGTCT--------GTAAGTAGCTTG-CCTC----GATTC--A---AAA-CTGATCATACGCA-G-AA-CAAGC--T-CTT--GC-G-TA-T-CGAA-T-AGTTG-AGAGA-C-TA-C-ACACCATATGCAG----GT--GAT-GAT-GGAATATT--GC---T---AC-ATGAAATATGCGAAGTGA--ACGATTGGAGAAGCTGAAATT---CGTTC----CG--G-TTGT--CAT--AAA-GTTGAGT-AGT---TAGTTTTG-CCTCGTT-AAT-GTC-AATGTTTTT----CAATTAAAAT-ATCC--AA--------GTA-CGAAGCAGACATGGAAGGGACTCTGT-GGGTTATGTCTCTCACTACTTCAAAGTT--TCGGaggga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CATTTTTTCTTAGGAACACGCATCGATTAATATTTATAATATCTGAATAGAGGTCTTCGTTTTATATTTTATCGATGAAGATGATCGTTAAGTTAATATATCAAGAAATATGTGATGGAAAAGGAAAGATCGAGTACTGTTATTGATGACAGTTCCCAAACTTTTAGAA
Unaligned ( gi|22 ): AAAGCTTTTCACAAATTCTTCCGGGCACGAATAAGAAGCAGGCGGCTTACAACTAGCAACAATTTGTGCTCATAAGAATGCCTGGAGACTGTTGTAAGACCCGATAACAAATACAAATGTTGTCCATAAGGAACCCGAGTATTGCT
Unaligned ( gi|27 ): TAAATCTCATAAAGCCTATAAGGAACACAAATTACGAGTTGGGGAAGCATGAATCCCTGAATA
Unaligned ( gi|29 ): TAAATCCTATAAGGAATACAAATGATAAAAATGGGCAAACATGGATCC
Unaligned ( gi|32 ): TGACAAAATATGTATCTTGTTTCCCAAGAC