lowQualScore : 11111 1 4444444444444 11 11111 1 1 1 11 111 222
lowQualScore : 4 2 00000 6 5 0 0000000000000 11 5 2 99 77777 5 5 0 6666 2 5 77 8 0 8 5 888888 66 0 5 000 0 222
lowQualScore : . . ..... . . . ............. .. . . .. ..... . . . .... . . .. . . . . ...... .. . . ... . ...
lowQualScore : 0 0 22222 7 1 4 1111111111111 33 3 9 77 66666 7 7 0 1111 5 3 33 0 1 7 3 111111 22 2 0 222 2 888
consensus : NNNTTATTAAA-CCCCTTTATGNCCTGT-AGATTACGAAAAAT------GT-----CAAAGTTC-AGG-TGA-GCTA-NAC-CAC-ACTTCCG-GGT-ATCAGAG----ATCTA-TT--AT-TTGCTAT-GGCA---TT-GAGTACCCCATGG-GA-CCCTCTACTCCAGGCAATGC-TTTGTTTCTTCTTTGCT
Reference ( gi|6 ) : TTTTTATTAAA-CCCCTTTATCCCTTGC-AGATTACAAAAAAT------GA-----CAAAGTTT-AGG-TGA-GCTA-AAC-TGT-ACTTCCG-GGT-ATCATAG----ATCTA-TT--AT-TTACT-T-GGCA---TT-GAGTACGTCATGG-GG-TCCTCTACTCCAGGCAATGA-TTTGTTTCTTCTTTGCT
gi|7 : TCATTAAA-CCC-TTTATGGTCGGT-AAGTTACGAAAA-T------GT-----CAAAGTTCCAGG-TGA-GCTA-T-C-CAC-ACTTCCG-GGT-ATCAGAG----ACCTA-AT--CT-TTCCTAT-GCCT---TG-GAGTA-GCCAATG-GA-CCCTCTA
gi|2 : acaagcgTTATCAAA-CCCTTTTATGACT-GT-AG-TTGCGAAAAATTGTCAAAAGTTCTCAAAGTTC-AGG-TGA-GCTATTAC-CAC-ACTTCCG-CGTCATCAGAG----AAC-A-TTTAATCTTAATAT-GGCA---TG-GAGTACCCAATAGCGA-CCCTCTAtgttatcaatgaatattctacttccttt
gi|1 : gctgTTATCAAA-CCCTTTTATGACT-GT-AG-TTGCGAAAAATTGTCAAAAGTTCTCAAAGTTC-AGG-TGA-GCTATTAC-CAC-ACTTCCG-CGTCATCAGAG----AAC-A-TTTAATCTTAATAT-GGCA---TG-GAGTACCCAATAGCGA-CCCTCTAtgcatatccaatgaatattccttacttcc
gi|8 : gctgATGAAA-CCCCTTTATCCCTTGC-AGATTACAAAATAT------GT-----CAAAGTTC-AGG-TGA-GCTA-AAC-TTT-ACATCCT-GGT-ATCATAG----ATCTA-TT--AT-TTGCT-T-GGCA---TT-GAGTACTTCTTGG-GA-TCCTCTATTCCTGGCAATGC-TTTGTTTCTTCTTTGCTtgcatatccaatgaatattccttacttcc
gi|10 : cATTAAA-CCCCTTTATCCCCTAC-AGATTACGAAACAT------GT-----TAAAGTCC-AGG-TGA-GCCA-AAC-TTT-ACTTTCG-GGT-ATCATAT----ATCTA-TT--AT-TTACG-T-GGGA---TT-GTGTACTCCATGG-GG-TCCTCTACTCCAGGCAATAT-TTTGTTTCTTCaa
gi|5 : cATTAAA-CCCCTTTATCCCCTGCTAGATTAC-AAAAAT------GT-----TAAAGTTC-AGG-TGA-GCTA-AACTTAT-GCTTCCG-GCT-ATCA-AG----ATCTATTT--AT-TTGCT-T-GGCA---TTCGAGTACTTC-TGG-GG-TCCTCAACTTCCAGCAATGCTTTTGTTTATTCTTTGCT
gi|4 : ATTAAA-CCCCTTTATCCCCTGCTAGATTAC-AAAAAT------GT-----TAAAGTTC-AGG-TGA-GCTA-AACTTAT-GCTTCCG-GCT-ATCA-AG----ATCTATTT--AT-TTGCT-T-GGCA---TTCGAGTACTTC-TGG-GG-TCCTCAACTTCCAGCAATGCTTTTGTTTATTCTTTGCTaac
gi|15 : ATTAAA-CCCCTTTATCCCCTGT-AGAATACGAAATAT------GT-----TAAAGTTC-AGG-TGA-ACCA-AAC-TTT-ACTTCCT-GGT-ATCATAG----ATATG-TT--AT-TTGCT-T-GGCA---TT-GTGTACTTCATGG-Gaac
gi|11 : ccATTAAAACCCCTTTATGGTCGGT-AAGTTACGAAAAAT------GT-----CAAAGTTC-AGG-TGAGGCTA-TAC-CAC-ACTTTC---GT-ATCAGAG----A-CTA-AA--ATCTTTCTGT-GGCA---TG-GAGTAC--CATAG-GA--CCTCTA
gi|9 : cATTAAA-CCC-TTTATGGTCGGT-AAGTTACGAAAA-T------GT-----CAAAGTTCCAGG-TGA-GCTA-T-C-CAC-ACTTCCG-GGT-ATCAGAG----ACCTA-AT--CT-TTCCTAT-GCCT---TG-GAGTA-GCCAATG-GA-CCCTCTAtgttatcaatgaatattttc
gi|18 : cCCTTTATGGTCTGT-AATTTGCGAAAAAT------AT-----CAAAGTTC-AGG-Ttgttatcaatgaatattctacttcctt
gi|12 : TGC-AGATTACGAAATAT------GT-----TCAAATTC-AGG-TGA-GCCA-AAC-TTT-ACTTCTG-GGT-AACATAG----ATCTA-TC--AT-TTGCT-T-GGTA---TT-GTGTACTTCCTGG-GC-TCCTCTCCTGCAGGCAATGC-TTT-TTTCTTCTTTGCT
gi|14 : -----CAAAGTTC-AGGGTGA-GCTA-TAC-CACCACTTCCGCGGT-ATCAGAG----ACCTA-AT--CT-TT-CTATGGGCA----T-GGGTACCCAATAG-GACCCCTCTACTaaac
gi|13 : gt-----CAAAGTTC-AGGGTGA-GCTA-TAC-CACCACTTCCGCGGT-ATCAGAG----ACCTA-AT--CT-TT-CTATGGGCA----T-GGGTACCCAATAG-GACCCCTCTACTtatattcagtgaatatttcctattcct
gi|3 : gtAAAGTTC-AGG-TGA-GCTA-AAC-TTT-ACTTCCG-GGT-ATCATAGACCTATCTA-TT--AT-TTGTA-T-GGCA---TT-GAGTATCTAATTC-GA-TTCTCTACTCTAGTTAGTGA-ATACTTTCTCCTtatattcagtgaatatttcctattcct
gi|17 : aatcctctgtaggttacccggaaggttacgaatcatgttatgtcgtgttCTA-TT--AT-C--CT-T-GGGAAAGGT-GAGTGC--CAAGG-AG-TCCTCTACTCCAGGCAATG--TTTGTTTCTTCTTTGCT
gi|19 : CATGG-G--TCCTCTACTCCAGGCAATGA--TTGTTTCTTCTTTGaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AACCCCTTGGTCGGCATTCACGATTCAAAGTACGATAATGGGTCAGGTAGTTCTCCTATATTCGGGCCTCTTAACGATCTTCTGCCTG
Unaligned ( gi|20 ): CAGTTATCAAACCCCTTTATGGTCTGTAAGTTGCGAAAAA
Alignments
lowQualScore : 11111111 1 11
lowQualScore : 3 0 22 0 5 4 88888888 888 5 5 2 66 88888 5 5 6 5555 1 5 77 8 5 2 5 5 11 2 4 777 44
lowQualScore : . . .. . . . ........ ... . . . .. ..... . . . .... . . .. . . . . . .. . . ... ..
lowQualScore : 3 2 55 2 7 1 11111111 888 0 0 7 33 44444 3 3 7 7777 7 3 33 0 9 6 3 0 99 1 7 444 66
consensus : NNNTTATTAAA-CCCCTTTATGNCCTG-TAGATTACGAAAAAT--------GT---CAAAGTT-CAGG-TGA-GCTA-NAC-CAC-ACTTCCG-GGT-ATCAGAG----ATCTA-TT--AT-TTGCTAT-GGCATT-GAGTACCCCATGG-GA-TCCTCTACTCCAGGCAATGC-TTTGTTTCTTCTTTGCT
Reference ( family-4010 ) : NNNTTATTAAA-CCCCTTTATGNCCTG-TAGATTACGAAAAAT--------GT---CAAAGTT-CAGG-TGA-GCTA-NAC-CAC-ACTTCCG-GGT-ATCAGAG----ATCTA-TT--AT-TTGCTAT-GGCATT-GAGTACCCCATGG-GA-CCCTCTACTCCAGGCAATGC-TTTGTTTCTTCTTTGCT
gi|1 : TTATCAAA-CCCTTTTATGAC-TG-TAG-TTGCGAAAAATTGTCAAAAGTTCTCAAAGTT-CAGG-TGA-GCTATTAC-CAC-ACTTCCG-CGTCATCAGAG----AAC-A-TTTAATCTTAATAT-GGCATG-GAGTACCCAATAGCGA-CCCTCTA
gi|10 : gctgATTAAA-CCCCTTTATCCCCTA-CAGATTACGAAACAT--------GT---TAAAGTC-CAGG-TGA-GCCA-AAC-TTT-ACTTTCG-GGT-ATCATAT----ATCTA-TT--AT-TTAC-GT-GGGATT-GTGTACTCCATGG-GG-TCCTCTACTCCAGGCAATAT-TTTGTTTCTTCtgcatatccaatgaatattccttacttcc
gi|11 : cATTAAAACCCCTTTATGGTCGG-TAAGTTACGAAAAAT--------GT---CAAAGTT-CAGG-TGAGGCTA-TAC-CAC-ACTTTC---GT-ATCAGAG----A-CTA-AA--ATCTTTCTGT-GGCATG-GAGTA--CCATAG-GA--CCTCTA
gi|12 : cTG-CAGATTACGAAATAT--------GT---TCAAATT-CAGG-TGA-GCCA-AAC-TTT-ACTTCTG-GGT-AACATAG----ATCTA-TC--AT-TTGCT-T-GGTATT-GTGTACTTCCTGG-GC-TCCTCTCCTGCAGGCAATGC-TTT-TTTCTTCTTTGCTtgttatcaatgaatattttc
gi|13 : --------GT---CAAAGTT-CAGGGTGA-GCTA-TAC-CACCACTTCCGCGGT-ATCAGAG----ACCTA-AT--CT-TT-CTATGGGCA-T-GGGTACCCAATAG-GACCCCTCTACTaaac
gi|14 : --------GT---CAAAGTT-CAGGGTGA-GCTA-TAC-CACCACTTCCGCGGT-ATCAGAG----ACCTA-AT--CT-TT-CTATGGGCA-T-GGGTACCCAATAG-GACCCCTCTACTtatattcagtgaatatttcctattcct
gi|15 : ATTAAA-CCCCTTTATCCCCTG-TAGAATACGAAATAT--------GT---TAAAGTT-CAGG-TGA-ACCA-AAC-TTT-ACTTCCT-GGT-ATCATAG----ATATG-TT--AT-TTGCT-T-GGCATT-GTGTACTTCATGG-Gtatattcagtgaatatttcctattcct
gi|17 : ccT-GAGTGCC--AAGG-AG-TCCTCTACTCCAGGCAATG--TTTGTTTCTTCTTTGCT
gi|18 : ctattatccttgggaaaggCCTTTATGGTCTG-TAATTTGCGAAAAAT--------AT---CAAAGTT-CAGG-Taa
gi|19 : CATGG-G--TCCTCTACTCCAGGCAATGA--TTGTTTCTTCTTTG
gi|2 : TTATCAAA-CCCTTTTATGAC-TG-TAG-TTGCGAAAAATTGTCAAAAGTTCTCAAAGTT-CAGG-TGA-GCTATTAC-CAC-ACTTCCG-CGTCATCAGAG----AAC-A-TTTAATCTTAATAT-GGCATG-GAGTACCCAATAGCGA-CCCTCTA
gi|20 : gctgTTATCAAA-CCCCTTTATGGTCTG-TAAGTTGCGAAAAAtgcatatccaatgaatattccttacttcc
gi|3 : cagT--------GT---TAAAGTT-CAGG-TGA-GCTA-AAC-TTT-ACTTCCG-GGT-ATCATAGACCTATCTA-TT--AT-TTG-TAT-GGCATT-GAGTATCTAATTC-GA-TTCTCTACTCTAGTTAGTGA-ATACTTTCTCCT
gi|4 : aatcctctgtaggttacccggaaggttacgaatcatgttatgtcgATTAAA-CCCCTTTATCCCCTGCTAGATTAC-AAAAAT--------GT---TAAAGTT-CAGG-TGA-GCTA-AACTTAT-GCTTCCG-GCT-ATCA-AG----ATCTATTT--AT-TTGCT-T-GGCATTCGAGTACTTC-TGG-GG-TCCTCAACTTCCAGCAATGCTTTTGTTTATTCTTTGCT
gi|5 : ATTAAA-CCCCTTTATCCCCTGCTAGATTAC-AAAAAT--------GT---TAAAGTT-CAGG-TGA-GCTA-AACTTAT-GCTTCCG-GCT-ATCA-AG----ATCTATTT--AT-TTGCT-T-GGCATTCGAGTACTTC-TGG-GG-TCCTCAACTTCCAGCAATGCTTTTGTTTATTCTTTGCTaac
gi|6 : TTATTAAA-CCCCTTTATCCCTTG-CAGATTACAAAAAAT--------GA---CAAAGTT-TAGG-TGA-GCTA-AAC-TGT-ACTTCCG-GGT-ATCATAG----ATCTA-TT--AT-TTACT-T-GGCATT-GAGTACGTCATGG-GG-TCCTCTACTCCAGGCAATGA-TTTGTTTCTTCTTTGCTaac
gi|7 : tttTCATTAAA-CCC-TTTATGGTCGG-TAAGTTACGAAAA-T--------GT---CAAAGTTCCAGG-TGA-GCTA-T-C-CAC-ACTTCCG-GGT-ATCAGAG----ACCTA-AT--CT-TTCCTAT-GCCTTG-GAGTAGCCAAT-G-GA-CCCTCTA
gi|8 : acaagcgATGAAA-CCCCTTTATCCCTTG-CAGATTACAAAATAT--------GT---CAAAGTT-CAGG-TGA-GCTA-AAC-TTT-ACATCCT-GGT-ATCATAG----ATCTA-TT--AT-TTGCT-T-GGCATT-GAGTACTTCTTGG-GA-TCCTCTATTCCTGGCAATGC-TTTGTTTCTTCTTTGCTtgttatcaatgaatattctacttccttt
gi|9 : cATTAAA-CCC-TTTATGGTCGG-TAAGTTACGAAAA-T--------GT---CAAAGTTCCAGG-TGA-GCTA-T-C-CAC-ACTTCCG-GGT-ATCAGAG----ACCTA-AT--CT-TTCCTAT-GCCTTG-GAGTAGCCAAT-G-GA-CCCTCTAaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACCCCTTGGTCGGCATTCACGATTCAAAGTACGATAATGGGTCAGGTAGTTCTCCTATATTCGGGCCTCTTAACGATCTTCTGCCTG
Alignments
lowQualScore : 11111111 1 11
lowQualScore : 3 0 22 0 5 4 88888888 888 5 5 2 66 88888 5 5 6 5555 1 5 77 8 5 2 5 5 11 2 4 55 44
lowQualScore : . . .. . . . ........ ... . . . .. ..... . . . .... . . .. . . . . . .. . . .. ..
lowQualScore : 3 2 55 2 7 1 11111111 888 0 0 7 33 44444 3 3 7 7777 7 3 33 0 9 6 3 0 99 1 7 22 66
consensus : NNNTTATTAAA-CCCCTTTATGNCCTG-TAGATTACGAAAAAT--------GT---CAAAGTT-CAGG-TGA-GCTA-NAC-CAC-ACTTCCG-GGT-ATCAGAG----ATCTA-TT--AT-TTGCTAT-GGCATT-GAGTACCCCATGG-GA-TCCTCTACTCCAGGCAATGC-TTTGTTTCTTCTTTGCT
Reference ( family-4010 ) : NNNTTATTAAA-CCCCTTTATGNCCTG-TAGATTACGAAAAAT--------GT---CAAAGTT-CAGG-TGA-GCTA-NAC-CAC-ACTTCCG-GGT-ATCAGAG----ATCTA-TT--AT-TTGCTAT-GGCATT-GAGTACCCCATGG-GA-TCCTCTACTCCAGGCAATGC-TTTGTTTCTTCTTTGCT
gi|1 : TTATCAAA-CCCTTTTATGAC-TG-TAG-TTGCGAAAAATTGTCAAAAGTTCTCAAAGTT-CAGG-TGA-GCTATTAC-CAC-ACTTCCG-CGTCATCAGAG----AAC-A-TTTAATCTTAATAT-GGCATG-GAGTACCCAATAGCGA-CCCTCTA
gi|10 : gctgATTAAA-CCCCTTTATCCCCTA-CAGATTACGAAACAT--------GT---TAAAGTC-CAGG-TGA-GCCA-AAC-TTT-ACTTTCG-GGT-ATCATAT----ATCTA-TT--AT-TTAC-GT-GGGATT-GTGTACTCCATGG-GG-TCCTCTACTCCAGGCAATAT-TTTGTTTCTTCtgcatatccaatgaatattccttacttcc
gi|11 : cATTAAAACCCCTTTATGGTCGG-TAAGTTACGAAAAAT--------GT---CAAAGTT-CAGG-TGAGGCTA-TAC-CAC-ACTTTC---GT-ATCAGAG----A-CTA-AA--ATCTTTCTGT-GGCATG-GAGTA--CCATAG-GA--CCTCTA
gi|12 : cTG-CAGATTACGAAATAT--------GT---TCAAATT-CAGG-TGA-GCCA-AAC-TTT-ACTTCTG-GGT-AACATAG----ATCTA-TC--AT-TTGCT-T-GGTATT-GTGTACTTCCTGG-GC-TCCTCTCCTGCAGGCAATGC-TTT-TTTCTTCTTTGCTtgttatcaatgaatattttc
gi|13 : --------GT---CAAAGTT-CAGGGTGA-GCTA-TAC-CACCACTTCCGCGGT-ATCAGAG----ACCTA-AT--CT-TT-CTATGGGCA-T-GGGTACCCAATAG-GACCCCTCTACTaaac
gi|14 : --------GT---CAAAGTT-CAGGGTGA-GCTA-TAC-CACCACTTCCGCGGT-ATCAGAG----ACCTA-AT--CT-TT-CTATGGGCA-T-GGGTACCCAATAG-GACCCCTCTACTtatattcagtgaatatttcctattcct
gi|15 : ATTAAA-CCCCTTTATCCCCTG-TAGAATACGAAATAT--------GT---TAAAGTT-CAGG-TGA-ACCA-AAC-TTT-ACTTCCT-GGT-ATCATAG----ATATG-TT--AT-TTGCT-T-GGCATT-GTGTACTTCATGG-Gtatattcagtgaatatttcctattcct
gi|17 : ccT-GAGTGCC--AAGG-AG-TCCTCTACTCCAGGCAATG--TTTGTTTCTTCTTTGCT
gi|18 : ctattatccttgggaaaggCCTTTATGGTCTG-TAATTTGCGAAAAAT--------AT---CAAAGTT-CAGG-Taa
gi|19 : CATGG-G--TCCTCTACTCCAGGCAATGA--TTGTTTCTTCTTTG
gi|2 : TTATCAAA-CCCTTTTATGAC-TG-TAG-TTGCGAAAAATTGTCAAAAGTTCTCAAAGTT-CAGG-TGA-GCTATTAC-CAC-ACTTCCG-CGTCATCAGAG----AAC-A-TTTAATCTTAATAT-GGCATG-GAGTACCCAATAGCGA-CCCTCTA
gi|20 : gctgTTATCAAA-CCCCTTTATGGTCTG-TAAGTTGCGAAAAAtgcatatccaatgaatattccttacttcc
gi|3 : cagT--------GT---TAAAGTT-CAGG-TGA-GCTA-AAC-TTT-ACTTCCG-GGT-ATCATAGACCTATCTA-TT--AT-TTG-TAT-GGCATT-GAGTATCTAATTC-GA-TTCTCTACTCTAGTTAGTGA-ATACTTTCTCCT
gi|4 : aatcctctgtaggttacccggaaggttacgaatcatgttatgtcgATTAAA-CCCCTTTATCCCCTGCTAGATTAC-AAAAAT--------GT---TAAAGTT-CAGG-TGA-GCTA-AACTTAT-GCTTCCG-GCT-ATCA-AG----ATCTATTT--AT-TTGCT-T-GGCATTCGAGTACTTC-TGG-GG-TCCTCAACTTCCAGCAATGCTTTTGTTTATTCTTTGCT
gi|5 : ATTAAA-CCCCTTTATCCCCTGCTAGATTAC-AAAAAT--------GT---TAAAGTT-CAGG-TGA-GCTA-AACTTAT-GCTTCCG-GCT-ATCA-AG----ATCTATTT--AT-TTGCT-T-GGCATTCGAGTACTTC-TGG-GG-TCCTCAACTTCCAGCAATGCTTTTGTTTATTCTTTGCTaac
gi|6 : TTATTAAA-CCCCTTTATCCCTTG-CAGATTACAAAAAAT--------GA---CAAAGTT-TAGG-TGA-GCTA-AAC-TGT-ACTTCCG-GGT-ATCATAG----ATCTA-TT--AT-TTACT-T-GGCATT-GAGTACGTCATGG-GG-TCCTCTACTCCAGGCAATGA-TTTGTTTCTTCTTTGCTaac
gi|7 : tttTCATTAAA-CCC-TTTATGGTCGG-TAAGTTACGAAAA-T--------GT---CAAAGTTCCAGG-TGA-GCTA-T-C-CAC-ACTTCCG-GGT-ATCAGAG----ACCTA-AT--CT-TTCCTAT-GCCTTG-GAGTAGCCAAT-G-GA-CCCTCTA
gi|8 : acaagcgATGAAA-CCCCTTTATCCCTTG-CAGATTACAAAATAT--------GT---CAAAGTT-CAGG-TGA-GCTA-AAC-TTT-ACATCCT-GGT-ATCATAG----ATCTA-TT--AT-TTGCT-T-GGCATT-GAGTACTTCTTGG-GA-TCCTCTATTCCTGGCAATGC-TTTGTTTCTTCTTTGCTtgttatcaatgaatattctacttccttt
gi|9 : cATTAAA-CCC-TTTATGGTCGG-TAAGTTACGAAAA-T--------GT---CAAAGTTCCAGG-TGA-GCTA-T-C-CAC-ACTTCCG-GGT-ATCAGAG----ACCTA-AT--CT-TTCCTAT-GCCTTG-GAGTAGCCAAT-G-GA-CCCTCTAaa
blockSeqs : A CC C A TGTCAAAA TCT C G G TT CACC C C T ACCT T T TA C A G G C CC G C AC CT
blockSeqs : . GG C G . . C G . A CACC C . G . T T . C T G G C CC A . AC CT
blockSeqs : . CC . A . . . . . T TTAT . . T . C . . . G A . . TC G . G C
blockSeqs : . GG . A . . . . . A TTAT . . G . C . . . G A . . CA A . A A
blockSeqs : . GA . T . . . . . T TTT . . G . T . . . A A . . CA A . C A
blockSeqs : . GG . G . . . . . T CAC . . T . A . . . G A . . TC G . G A
blockSeqs : . CC . A . . . . . A TTT . . G . T . . . G A . . CA G . A C
blockSeqs : . CC . A . . . . . A TTT . . T . T . . . G A . . TA G . A .
blockSeqs : . CC . A . . . . . A CAC . . T . T . . . A . . . TC A . G
blockSeqs : . GG . G . . . . . A TTT . . G . T . . . C . . . TC T . G
blockSeqs : . CC . A . . . . . A TGT . . T . C . . . G . . . TC G . G
blockSeqs : GG . G . . . . . T CAC . . G . T . . . C . . . CA G . A
blockSeqs : . . . . . . . A TTT . . . . C . . . . . . . TC G . A
blockSeqs : . . . . . T CAC . . . . . . . . . . . . CA G . A
blockSeqs : . . . . . . . . .
blockSeqs : . .
blockSeqCons : ******** *** A* **
originalCons : NNNTTATTAAA-CCCCTTTATGNCCTG-TAGATTACGAAAAAT--------GT---CAAAGTT-CAGG-TGA-GCTA-NAC-CAC-ACTTCCG-GGT-ATCAGAG----ATCTA-TT--AT-TTGCTAT-GGCATT-GAGTACCCCATGG-GA-TCCTCTACTCCAGGCAATGC-TTTGTTTCTTCTTTGCT
finalCons : NNNTTATTAAA-CCCCTTTATGNCCTG-TAGATTACGAAAAAT--------GT---CAAAGTT-CAGG-TGA-GCTAA-AC-CAC-ACTTCCG-GGT-ATCAGAG----ATCTA-TT--AT-TTGCTAT-GGCATT-GAGTACCCCATGG-GA-TCCTCTACTCCAGGCAATGC-TTTGTTTCTTCTTTGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACCCCTTGGTCGGCATTCACGATTCAAAGTACGATAATGGGTCAGGTAGTTCTCCTATATTCGGGCCTCTTAACGATCTTCTGCCTG
Alignments
lowQualScore : 11111111 1 11
lowQualScore : 3 0 22 0 5 4 88888888 888 5 5 2 5 88888 5 5 6 5555 1 5 77 8 5 2 5 5 11 2 4 55 44
lowQualScore : . . .. . . . ........ ... . . . . ..... . . . .... . . .. . . . . . .. . . .. ..
lowQualScore : 3 2 55 2 7 1 11111111 888 0 0 7 3 44444 3 3 7 7777 7 3 33 0 9 6 3 0 99 1 7 22 66
consensus : NNNTTATTAAA-CCCCTTTATGNCCTG-TAGATTACGAAAAAT--------GT---CAAAGTT-CAGG-TGA-GCTA-AAC-CAC-ACTTCCG-GGT-ATCAGAG----ATCTA-TT--AT-TTGCTAT-GGCATT-GAGTACCCCATGG-GA-TCCTCTACTCCAGGCAATGC-TTTGTTTCTTCTTTGCT
Reference ( family-4010 ) : NNNTTATTAAA-CCCCTTTATGNCCTG-TAGATTACGAAAAAT--------GT---CAAAGTT-CAGG-TGA-GCTA-AAC-CAC-ACTTCCG-GGT-ATCAGAG----ATCTA-TT--AT-TTGCTAT-GGCATT-GAGTACCCCATGG-GA-TCCTCTACTCCAGGCAATGC-TTTGTTTCTTCTTTGCT
gi|1 : TTATCAAA-CCCTTTTATGAC-TG-TAG-TTGCGAAAAATTGTCAAAAGTTCTCAAAGTT-CAGG-TGA-GCTATTAC-CAC-ACTTCCG-CGTCATCAGAG----AAC-A-TTTAATCTTAATAT-GGCATG-GAGTACCCAATAGCGA-CCCTCTA
gi|10 : gctgATTAAA-CCCCTTTATCCCCTA-CAGATTACGAAACAT--------GT---TAAAGTC-CAGG-TGA-GCCA-AAC-TTT-ACTTTCG-GGT-ATCATAT----ATCTA-TT--AT-TTAC-GT-GGGATT-GTGTACTCCATGG-GG-TCCTCTACTCCAGGCAATAT-TTTGTTTCTTCtgcatatccaatgaatattccttacttcc
gi|11 : cATTAAAACCCCTTTATGGTCGG-TAAGTTACGAAAAAT--------GT---CAAAGTT-CAGG-TGAGGCTA-TAC-CAC-ACTTTC---GT-ATCAGAG----A-CTA-AA--ATCTTTCTGT-GGCATG-GAGTA--CCATAG-GA--CCTCTA
gi|12 : cTG-CAGATTACGAAATAT--------GT---TCAAATT-CAGG-TGA-GCCA-AAC-TTT-ACTTCTG-GGT-AACATAG----ATCTA-TC--AT-TTGCT-T-GGTATT-GTGTACTTCCTGG-GC-TCCTCTCCTGCAGGCAATGC-TTT-TTTCTTCTTTGCTtgttatcaatgaatattttc
gi|13 : --------GT---CAAAGTT-CAGGGTGA-GCTA-TAC-CACCACTTCCGCGGT-ATCAGAG----ACCTA-AT--CT-TT-CTATGGGCA-T-GGGTACCCAATAG-GACCCCTCTACTaaac
gi|14 : --------GT---CAAAGTT-CAGGGTGA-GCTA-TAC-CACCACTTCCGCGGT-ATCAGAG----ACCTA-AT--CT-TT-CTATGGGCA-T-GGGTACCCAATAG-GACCCCTCTACTtatattcagtgaatatttcctattcct
gi|15 : ATTAAA-CCCCTTTATCCCCTG-TAGAATACGAAATAT--------GT---TAAAGTT-CAGG-TGA-ACCA-AAC-TTT-ACTTCCT-GGT-ATCATAG----ATATG-TT--AT-TTGCT-T-GGCATT-GTGTACTTCATGG-Gtatattcagtgaatatttcctattcct
gi|17 : ccT-GAGTGCC--AAGG-AG-TCCTCTACTCCAGGCAATG--TTTGTTTCTTCTTTGCT
gi|18 : ctattatccttgggaaaggCCTTTATGGTCTG-TAATTTGCGAAAAAT--------AT---CAAAGTT-CAGG-Taa
gi|19 : CATGG-G--TCCTCTACTCCAGGCAATGA--TTGTTTCTTCTTTG
gi|2 : TTATCAAA-CCCTTTTATGAC-TG-TAG-TTGCGAAAAATTGTCAAAAGTTCTCAAAGTT-CAGG-TGA-GCTATTAC-CAC-ACTTCCG-CGTCATCAGAG----AAC-A-TTTAATCTTAATAT-GGCATG-GAGTACCCAATAGCGA-CCCTCTA
gi|20 : gctgTTATCAAA-CCCCTTTATGGTCTG-TAAGTTGCGAAAAAtgcatatccaatgaatattccttacttcc
gi|3 : cagT--------GT---TAAAGTT-CAGG-TGA-GCTA-AAC-TTT-ACTTCCG-GGT-ATCATAGACCTATCTA-TT--AT-TTG-TAT-GGCATT-GAGTATCTAATTC-GA-TTCTCTACTCTAGTTAGTGA-ATACTTTCTCCT
gi|4 : aatcctctgtaggttacccggaaggttacgaatcatgttatgtcgATTAAA-CCCCTTTATCCCCTGCTAGATTAC-AAAAAT--------GT---TAAAGTT-CAGG-TGA-GCTA-AACTTAT-GCTTCCG-GCT-ATCA-AG----ATCTATTT--AT-TTGCT-T-GGCATTCGAGTACTTC-TGG-GG-TCCTCAACTTCCAGCAATGCTTTTGTTTATTCTTTGCT
gi|5 : ATTAAA-CCCCTTTATCCCCTGCTAGATTAC-AAAAAT--------GT---TAAAGTT-CAGG-TGA-GCTA-AACTTAT-GCTTCCG-GCT-ATCA-AG----ATCTATTT--AT-TTGCT-T-GGCATTCGAGTACTTC-TGG-GG-TCCTCAACTTCCAGCAATGCTTTTGTTTATTCTTTGCTaac
gi|6 : TTATTAAA-CCCCTTTATCCCTTG-CAGATTACAAAAAAT--------GA---CAAAGTT-TAGG-TGA-GCTA-AAC-TGT-ACTTCCG-GGT-ATCATAG----ATCTA-TT--AT-TTACT-T-GGCATT-GAGTACGTCATGG-GG-TCCTCTACTCCAGGCAATGA-TTTGTTTCTTCTTTGCTaac
gi|7 : tttTCATTAAA-CCC-TTTATGGTCGG-TAAGTTACGAAAA-T--------GT---CAAAGTTCCAGG-TGA-GCT--ATC-CAC-ACTTCCG-GGT-ATCAGAG----ACCTA-AT--CT-TTCCTAT-GCCTTG-GAGTAGCCAAT-G-GA-CCCTCTA
gi|8 : acaagcgATGAAA-CCCCTTTATCCCTTG-CAGATTACAAAATAT--------GT---CAAAGTT-CAGG-TGA-GCTA-AAC-TTT-ACATCCT-GGT-ATCATAG----ATCTA-TT--AT-TTGCT-T-GGCATT-GAGTACTTCTTGG-GA-TCCTCTATTCCTGGCAATGC-TTTGTTTCTTCTTTGCTtgttatcaatgaatattctacttccttt
gi|9 : cATTAAA-CCC-TTTATGGTCGG-TAAGTTACGAAAA-T--------GT---CAAAGTTCCAGG-TGA-GCT--ATC-CAC-ACTTCCG-GGT-ATCAGAG----ACCTA-AT--CT-TTCCTAT-GCCTTG-GAGTAGCCAAT-G-GA-CCCTCTAaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACCCCTTGGTCGGCATTCACGATTCAAAGTACGATAATGGGTCAGGTAGTTCTCCTATATTCGGGCCTCTTAACGATCTTCTGCCTG