lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 111 66666666666 33333 1 1 1 1 11111 4444444444 22 1 1 11 33333333 22 22 222 1 2222 22 1 22 1 555 1 44444 1 1 1 1 333 6666666 111 11 1 2222222 111 1111 1 1 1 22 1 222 1 222 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6666666666666666 33 1 99999 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 111 11 111 33333333333333333 11111 11 2222222222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111 1 1 22
lowQualScore : 44 6 555 66666666666 44444 0 8 7 6 3 88 9 3 1 3 6 44444 6666666666 2 6 2 22 5 3 2 88 0 88 3 88888888 22 2 6 6 11 111 6 6 7 6 7777 6 6 11 6 5 33 6 5 222 5 33333 5 7 5 7 6 6 555 1111111 111 22 7 5555555 8 2 2 333 4 2 8888 0 3 2 7 0 33 0 999 6 555 0 3 0 3 4 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 77 7777777777777777 11 6 6 00000 6 0 4 0 6 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 1 777 2 000 1 44 3 8 444 88 00000000000000000 8 6 3 2 00000 0 6 66 5 44 8888888888 0 77 6 2 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 2 111 1 3 9 3 7 6 11 6
lowQualScore : .. . ... ........... ..... . . . . . .. . . . . . ..... .......... . . . .. . . . .. . .. . ........ .. . . . .. ... . . . . .... . . .. . . .. . . ... . ..... . . . . . . ... ....... ... .. . ....... . . . ... . . .... . . . . . .. . ... . ... . . . . . ..................................................................................................................................................................................................................................................................... . . .. ................ .. . . ..... . . . . . .................................................................................... . . ... . ... . .. . . ... .. ................. . . . . ..... . . .. . .. .......... . .. . . ....................................................................................................................................................................................................................................................... . . ... . . . . . . .. .
lowQualScore : 55 0 777 00000000000 77777 7 3 0 0 3 33 0 3 0 3 0 77777 0000000000 5 0 5 55 5 0 5 55 5 00 0 55555555 00 5 0 0 00 000 0 0 0 0 0000 0 0 00 0 0 00 0 0 000 0 00000 0 0 0 0 0 0 000 0000000 000 00 0 3333333 2 0 0 888 0 2 2222 5 2 2 0 0 22 0 000 2 888 2 2 0 2 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 7 00 0000000000000000 77 0 0 00000 0 7 7 7 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 2 555 5 777 4 66 2 0 222 22 44444444444444444 0 7 2 5 11111 1 5 99 0 55 1111111111 4 77 7 5 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 5 555 4 2 7 2 0 0 00 0
consensus : TTTTNNACATTATA-GGCAGTTGCT------TCTTCAACAATTA--GAAAAAAGAAATTTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACCCCACTCTGGATTNTGCGCACAAGTACTNTGAAGTTNGATATTANAGCAATGCTNGAGTTCNTCNTTGACAGCATNTCGGCNGTCGTTTTGGNNATCAGGTNTTCCAACANCTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTGTGTTANCNATTGACAATCATAATTTTCNTTCA--TATGTCGATTCAATATATCCCGANGAACTAGAAATANAGGACACCACAGAGTNTNCCATATCTGCTTCGTACT-TGGATATTTT-ATTGAA-C-ATTGACATTAACGGCAA-ACTAACNACTA--C--G---T-TAT----GAC-AA-C-G-GACG---A-----TTT-CAA-TTCTCCAAC-------GTC------CCATATTTATGTA-AGCAA-TATTCC-ATCATCA--CCTGC---T-TGTGCA-GTN--TGTGTC-CC---CT----ATTCGATAC-GCAAGAGCTTGTTCTGCGTATG-----CAGGN---TTTT-AT-TC-GA-GC---AGGCTAC-TA-----C----AAANAAGT-C---------------GTTGTTGCAGGGNTTTCAACAGTC-CG-TTAAAGTG--GCATTTCGCAAA-TTCTACGGTCGTT-TAACAAT-TAGTTTGCCAGTATAANCTACCATTGAGTCAACAT--GATGCTGACTGACNNNTTTCGTNNCNNTTNNTTAGACNGTCGTNCTTCNTAC---ATN-GATT-CG------GT-ATCCGTTTACC---TNATCGAGACAATGGGNTCACGG-CGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-GG-TGTGTC---------CAGGG-GT-CCGTGTTTGCCCAACTCTCG-TTTT---------GTNTTC-TATT---TGGGACTT-------A---CGA----GATTG--NTCACTGTT---CGTTATCTTTGC--CTTT--AT-ATTT-AN--ACAACACG-CGTTANANGAA--TCGTGGCA-----CAANT---AAAAAA---------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTT-TA---AAT-A-GAAAATAAAA-CAAGAGTTNGGCAAACACGGACCCCTGGATACACCAGAGGTGGGATCAGGTGCCTAGTAAAGCTTTAATTGA
Reference ( gi|1 ) : TTTTGAATATTATA-GACAGTTGCT------TC---AACAAAAACGGAAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT--G-ATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGA---T---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTT-TGGATA-TTT-ATTGAA-A-ATAGACGTAAACGGCAA-ACTAACAACT---C--A---T-TAT----GAC-AA-C-G-GACG---A-----TTT-CAG-TTCTCTAAC-------GT-------CCAGATTTAT-TA-A--AA-CATTCCTATTATTC--CCTGC---TATATGCAAGTCGATATATCTTCAATCT----ATTCGATACTACAAGAGTTTGTTCTGCGTATG--C--CAG-----CTTTAATATC-AA-GC---AGGCTAC-TA-----C----AAACAAGT-----------------GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAATTGC-GCATTTCGCAA--TTCTATAGTCGTTATAA-----TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTGTT---A-TGCTATTCTTTTTAC---ATT-GATT---------GT--TCAGTTTACC---TGATCGAGACAATGGGCTCACGG-CGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-GA-TGTGTC---------TAGGA-GT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-TATT---TGGGATTT-------A---CGA----GATTG--TTCACTGTT---CGTTATCTTTGC--CTTT--AT-ATTTAAA--ACAACACA-CATCACATGAA--TAATGGCA-----CACCT---AAAACA---------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTA---AAT-A-GAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGACACAAATAATAACCCTGAACTGA
gi|8 : TTTTATACATTAAA-G-CAGTTGCTGTGACTTC---AACAATTA--GAAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC-CT--GGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|13 : aagtcagacacTTTAACATTATAAGGCAGTTGCT------TCTTCAACAATTAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|5 : ACATTATA-GACAGTTGCT------TCTTCAACAAAAATGGAAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGT-TGATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACA
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTT---TTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|2 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctc---ATGA---TGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATT-TGGATA-TTTTACTTAG-CCATTGACTCTAATGGCAG-GCTGACAACTA--C--G---T-TATATATGAT-AAGC-GTGATG---ACTAACTTTGCAA-TCGTC-AAC-------TTT------CCCTTTCTATGTA-AGTAA-TATACC-ACTATCA--CCTGC---T-TATG---GTGTGTATATCTCC---CTGTTGATTCGATAC-GCAAG-GCATGCTATGCGTATG------AGGA---CTTT--TTTA-AA-GCCGGAGGCCAC-TA-----CTAACAAAAAAGTTC---------------ATAGCTGCAGGGTTTATAAGAATCTCGTTTAAAGTCA-TCATTTCGCAAA-TTCTACGGTCGCTATAACTCC-TTGTTTGCAATTACAAATTATCACTAAGT---CAT--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTACTAGATTTGACTACG------GTAATCCCTTTACT---TTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGTC-----------GGAGGT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-TTTT---TTGGA-TT-------A---TGATTACGTTTG--ACCAATGTTAAGCGTTG-CTTT-----TTT--GT-ATT---G--ACAATA-G-TGTCAAAAGGA--TCG-GGCA-----CAAGTTAAAAAACATAGATTGTTAGACAA--GTAACG--------AATAGaaacat
gi|3 : gtatatagTTTCTT-A--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATT-TGGATATTTT-ATTGAA-C-ATAGACAT-TACGGTAATAC-AACAACCATGC--C---T-TGT----GAC-AA-A-A-GA-GAGAA-----TTT-CAGCTTCTCCAACGTCATCTGT-------CTATATTCAT-TGTAGCAA-CATTCC-ATCATCA--CC----------TGCAAACTG-TGTG---------T----ATTCGATAC-ACACGAGTTTATTCTGCGAATG--CTACGGGGTTTTTTTTAT-TCGGG-GC---AGGCTAC-TGGTGATC----AAATTGGTATACCGTAATATATGCGGTTGTTGCAGTGGTTTCAACAG----G-------TG--GCATTTTCCAA--ATCTATGGTCGTT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTTGT---A-GATCGTACTTTATAC---ATG-GATTTTGACAACAGTTATCAGCTTTCCGTGTGA---AGGCAATGAACTCATGG-TGGG-TTGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-TG-TGTGGT---------CAGGG-ATACC--GTTTGCCTATCTCTTA-TTTT----------TAATC-TGTTA--TG---TCT-------A------------------TCACTGTT---CGTTATC-TTGT--CTTT--ATCACTTCAT--TCAATAC--TGT----TGTG--TTATGGTA-----CAAAT---ACAAAA---------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TA---AAT-C-GA
gi|4 : tttatcaacaccaatgatactagcTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACT-TTGATATTTT-ATTGAA-C-ATTAACATTAACGGC-A-ACTACTTACT---CAAA---TATAT----GACAAA-CGG-GACG---A-----TTT-CCA-TTCTCCATC-------GTCAACTTCCCATATTTATGTA-C--AATTATTCC-ATCA-TCAACCTGCACATTTGTGCATGTC------TC-TCAACTT----ATTCGATACCGAAAGAGCTTGTTCTGCGTATGAAA--TAGTT---TTTTGA-ATC-AAGGC---AGGCTACTTA-----C----AAACAAGT-----------------GTT-TTGCAAGGATTTCAACAGTCACA-TTAAAAGGCAGCCTTTCGTAAATTTCTATGATCGTTTTAACAAT-TAGTTTACCAGTATGACCTACCATTGAGTCAA--TTAA
gi|11 : CGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACGTAT--TTT-ATTGAACA-AT-GACATTAAGGGCAA-ACTAACTGCT---C--AACTT-TAT----GAC-AA------ACG---A-----
gi|10 : ---ATA-GATT---------AC--TCCGTTCACT---TGATCAAGAGAATGGAACAACGG-CTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-GG-TGTATC---------TAAGaac
gi|9 : tcaacaggagttaataattatatcgtctgactTTAACC---TTAGCGAGACATAAGGTTCACAG-CTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-GA-TATATC---------AAGGG-AT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCATATTGAATAGAACTG-------G---CAA----GGTTT--ATC-CTGTT---CATTATCTTTACCTCTTT--AT-AT
gi|6 : tcCGGGATAATGG---TAC---CGG--TTGGC-GGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTGG-TGTGTCAGAGTGAGTTGAGA-GT-CCGTGTTTTCCC------------------------------ATC---TGGGACTTAAATTAAA---CGA----AACTGGATTCACTG-T---CG-TA-CTTTG----TTT---T-ATTTAAT--G---------ATT-CAGGAAATTTGTGGCAACTGTCATCTA--AAAAAA---------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAATg
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTC---------CACGG-GT-CTGTGTTTGTCggtggaaaa
gi|17 : acaAGGCACCTAATCCCACC--TCT-GG-TGTATC---------acctgatcccactctt
gi|12 : gGCACCTGATTCCACC--T---GG-TATATC---------CAAGG-GT-CCGTGTTT-TCCAACTTTTG-TTTT---------GTATTC-T---------GATTT-------ACAGCGA-----ATCG--CTCACTGTT---CGT----TTTGT--CTTtaaagctttaattga
gi|18 : cgCACTGTT---CGTTATATTTGC--CTTT--AT-ATT--AA--ACAACA
gi|3 : GTTA-CTTCGC--CTTTTTGT-ATTTGTACCATAACACAACAGTAT-TGAA--TGAAG------------T---GATA-A---------AGACAA-GATAACG--------AACAGTGATA--------GACAT--------------AAC-A-G--ATTAAAAATAAGAGATAGGCAAACG-GTATCCCTGACCACACAAGATGTGG-ATCAGGTGCTTAGggca
gi|12 : tttatcaacaccaatgatactagctttcttatatgtcgatttaatgcatccctgtgaactagaaataaaagacgccaaaacgtgaccaataactgattcgtatttggatattttattgaacatagacattacggtaatacaacaaccatgccttgtgacaaaagagagaatttcagcttctccaacgtcatctgtctatattcattgtagcaacattccatcatcacctgcaaactgtgtgtattcgatacacacgagtttattctgcgaatgctacggggttttttttattcggggcaggctactggtgatcaaattggtataccgtaatatatgcggttgttgcagtggtttcaacaggtggcattttccaaatctatggtcgtttaagaatttagtttgccagtataatctgccattgaatcaatattgctcaatttttgttgcaatttgtagatcgtactttatacatggattttgacaacagttatcagctttccgtgtgaaggcaatgaactcatggtgggttgatcggtcaacaggggtggattactcccA---------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC----TGTA---AATCA-GAATACAAAA-CAAAAGTTGGA-AAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCattgttgtcaacgtaatcataaaaaagctctcgcaagttaaatcga
gi|9 : cg---------AGGTAAAGATAATG--------AACAG-GATA--------AACCTTGCCAGTTCTATTCAAT-ATGAAAAT-----CCGGATTTTGGCAAACACTGATCCCTTGATATATCAGAGGGGATAGCA
gi|14 : tcttaaccttagcgagacataaggttcacagctgatgtgagattcaaacagggaaGACAAACACAGACCCGTGG--ACACCAGAGGTGG-AGCAGGTGCCTAGctttatatg
gi|10 : acagctgactcctcCTTAGATACACCAGAGGTGGGATCAAGTGCCCAGacctgatcccactctt
gi|17 : tcaacaggagttaataattatatcgtctgactatagattactccgttcacttgatcaagagaatggaacaacggcttgtgtgaccagtcgatgggggaatgtttgctccttGGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): AATTTATTGAACATACATGTAGGCCGTTACCTTTTGCCGCAATTCACCTACGTAAAATTTGGCAACAAAATAGTATTCGCGGTCCTCCATCATCGCTTCCCATATTTACGTGGGCAGCAATCCATTAATCGCCCTGATGTCGTCAACCGATTGAGTACATGAAAATAGTTGTTCTGTGTATTTTTTTCACCAATCGAGAAACAGGTTACTGACAA
Unaligned ( gi|15 ): TATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGTTATGTCCA
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111
lowQualScore : 1 1111 22222222 1 11 1 2222222 22 444444444 1 2 555555555 111 2222222 444444444444 22222 33333 1 11 222222 2222222 11 11111111111111111111111111111111111111 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 5555555555555555 1 1 11 1 333 11 333333333 0000000000000 111 111111 11 2222222222 888888888888888888888888888888888888888888888888888888888888 111 111 1111 11111 2222222222 11 22222 111 1 33333333333 111 22222222 33333333 222222 11 2 2 11
lowQualScore : 22 3 0 4444 44444444 4 0 3 11 0 3 3 0000000 1 0 1 11 7 1 1 1 1 7 0 1 333333333 22 1 1 2 3 2 4 3 2 3 3 4 3 5 3 0 4 2 4 3 4 111111111 1 1 2 0 777 4444444 4 1 1 111 6 0 0 0 8 1 0 0 8 0 1 666666666666 8 77777 3 44444 0 33 888888 2 6666666 8 88 8 8 8 8 55555555555555555555555555555555555555 8 8 0 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 1 3 4444444444444444 3 0 3 2 0 33 0 7 0 1 8 000 44 4 333 0 22 22 000000000 0 1 11 7 1 7777777777777 2 1 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 3 77 5 11 5 9999999999 6 3 999999999999999999999999999999999999999999999999999999999999 222 111 7 5555 1 6 6 77777 1 6666666666 1 33 555 55555 444 0 88888888888 999 99999999 0 9 66666666 9 2 666666 00 6 0 0 2 7 3 88 4 3
lowQualScore : .. . . .... ........ . . . .. . . . ....... . . . .. . . . . . . . . ......... .. . . . . . . . . . . . . . . . . . . . . ......... . . . . ... ....... . . . ... . . . . . . . . . . . ............ . ..... . ..... . .. ...... . ....... . .. . . . . ...................................... . . . .. .................................................................................. . . . ................ . . . . . .. . . . . . ... .. . ... . .. .. ......... . . .. . . ............. . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . .......... . . ............................................................ ... ... . .... . . . ..... . .......... . .. ... ..... ... . ........... ... ........ . . ........ . . ...... .. . . . . . . .. . .
lowQualScore : 00 2 0 8888 55555555 0 0 2 22 0 2 7 7777777 0 7 0 33 3 0 0 0 0 3 7 0 333333333 00 0 0 5 0 5 0 0 5 0 0 0 0 5 0 0 0 5 0 0 0 666666666 0 0 0 2 555 0000000 6 0 0 222 8 8 8 8 0 4 8 8 0 8 0 444444444444 0 22222 2 00000 0 22 888888 5 2222222 0 66 0 0 0 0 44444444444444444444444444444444444444 0 0 8 00 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 0 2 2222222222222222 2 0 2 0 0 22 2 0 0 0 8 333 33 0 000 7 00 00 777777777 7 0 77 3 0 0000000000000 5 0 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 0 99 7 00 3 2222222222 7 2 444444444444444444444444444444444444444444444444444444444444 000 777 3 3333 7 7 7 44444 4 8888888888 2 88 555 00000 555 0 00000000000 444 00000000 8 2 22222222 2 5 888888 88 0 0 5 5 3 7 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTT-ATTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATTGATGA---TGTGTTANCNATTAACAATCGTAAT---TTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G-GACGA--A--TTT-CAG-TTCTC------CAACNTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TGTGN-AGT--GTGT-GTC-T--A-CCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GGTTTTTT----AT-TCGA-G---C---AGGCTAC-T----A-----CAAAC-----------AA-----G-T-GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA--GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAATT-AGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATT-GTTAGA-TGTCGTTCTTTTTACATNGATTT-G-CA-CGGT-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGG----------GT-CCGTGTTTGCCCAACTCTCG-TTTT---------GTTTTC-TATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-A-TTT-AAACAACACGCGTCACANGAA--TCGTGGCA-----CAN-CTAAAA-AA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-NTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNNACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TAG--AAAAAAGAAATTTTCATATTTAG-TGATCAGTT-ATTCTGAA-AATTACTTTGTTAAACCCCACTCTGGATTNTGCGCACAAGTACTNTGAAGTTNGATATTANAGCAATGCTNGAGTTCNTCNTTGACAGCATNTCGGCNGTCGTTTTGGNNATCAGGTNTTCCAACANCTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTGTGTTANCNATTGACAATCATAAT---TTTCNTTCA--TATGTCGATTCAATATATCCCGANGAACTAGAAATANAGGACACCACAGAGTNTNCCATATCTGCTTCGTACTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACNACT--ACG--T----TATGAC-AA-C-G-GACGA-----TTT-CAA-TTCTC------CAACGTC------CCATATTTAT-GTAAGCAA-TATTCC-ATC-ATC-ACCTGC----T-TGTGC-AGT--NTGT-GTC-C----CCT----ATTCGATA-C-GCAAGAGC--TTGTTCTGCGTATGC----A--GGNTTTT-----AT-TCGA-G---C---AGGCTAC-T----A-----CAAAN-----------AA-----G-TCGTTGTTGCAGGGNTTTCAACAGTC-CG-TTAAA--GT-G-GCATTTCGCAAA-TTCTACGGTCG-TT-TAACAATT-AGTTTGCCAGTATAANCTACCATTGAGTCAACAT--GATGCTGACTGACNNNTTTCGTNNCNNTTNNTTAGACNGTCGTNCTTCNTACATNGATT-------CGGT-ATCCGTTTACCTNATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGG----------GT-CCGTGTTTGCCCAACTCTCG-TTTT---------GTNTTC-TATT---TGGGACTTA-------CGA----GATTGN--TCACTGTT---CGTTATCTTTGC--CTTTAT-A-TTT-ANACAACACGCGTTANANGAA--TCGTGGCA-----CAA-NTAAAA-AA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-TTAAAT-AGAAAATAAAA-CAAGAGTTNGGCAAACACGGACCCCTGGATACACCAGAGGTGGGATCAGGTGCCTAGTAAAGCTTTAATTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTC-ATTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAATAAAAAA-TCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACAATGAT---------TTAGCGATTAATAATTGTAAT---ATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATATTT-A-TTGAAAATAGACGTAAACGGCAA-ACTAACAACT---CA--T----TATGAC-AA-C-G-GACGA-----TTT-CAG-TTCTC------TAACGT-------CCAGATTTAT--TAA--AA-CATTCCTATT-ATT-CCCTGC----TATATGCAAGTCGATAT-ATC-TTCAATCT----ATTCGATA-CTACAAGAGT--TTGTTCTGCGTATGC----C--AGCTTTA-----ATATCAA-G---C---AGGCTAC-T----A-----CAAAC-----------AA-----G-T-GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA--TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA-T-AGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATT-GTTA---TGCTATTCTTTTTACATTGATT---------GT--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGA----------GT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-TATT---TGGGATTTA-------CGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-A-TTTAAAACAACACACATCACATGAA--TAATGGCA-----CAC-CTAAAA-CA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAACT--T----TATGAC-AA------ACGA-----
gi|12 : A-----------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTT-GGAAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCaac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTA-ATTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGG----------GT-CTGTGTTTGTC
gi|15 : acaGTATTATCTGTTAACAATCATAAT---TTTCAGT----TATGTCacctgatcccactctt
gi|17 : tatagataaaGGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A--TT-AAACAACAGGC
gi|2 : TATATAGATGA---TGTGTTATCAATTAACAATCATAAT---TTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT--ACG--TTATATATGAT-AAGC-GTGATGACTAACTTTGCAA--TCGT------CAACTTT------CCCTTTCTAT-GTAAGTAA-TATACC-ACT-ATC-ACCTGC----T-TATGG-TGT--GTAT-ATCTC----CCTGTTGATTCGATA-C-GCAAG-GC--ATGCTATGCGTATG-----A--GGACTTT-----TT-TAAA-G---CCGGAGGCCAC-TACTAA-----CAAAA-----------AA-----GTTCATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA--GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTCCT-TGTTTGCAATTACAAATTATCACTAAGT---CAT--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTTGACTA-CGGTAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAG----------GT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-TTTT---TTGGA-TTA-------TGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-A-TT---GACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTTAAAA-AACATAGATTGTTAGACAA--GTAACG--------AATAGa
gi|3 : gCAATGATACTAGCTTTCTT--A--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATTA-CGGTAATAC-AACAACC--ATGCCT----TGTGAC-AA-A-A-GA-GAGAA--TTT-CAGCTTCTC------CAACGTCATCTGTCTATATTCATTGTA-GCAA-CATTCC-ATC-ATC-ACCTGC---------AA-ACT--GTGT-GT--------------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATGCTACGG--GGTTTTTTTT--AT-TCGG-GG--C---AGGCTAC-T----GGTGATCAAATTGGTATACCGTAATATATG-CGGTTGTTGCAGTGGTTTCAACAG-------------GT-G-GCATTTTCCAAA-T-CTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTTGT-AGA---TCGTACTTTATACATGGATTTTGACAACAGTTATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGATCC-ACA--TCT-T-GTGTGGTCAGGG----------ATACCGT--TTGCCTATCTCTTA-TTTT----------TA-----ATC---TG----TTA-------TG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTTC-ATTCAATAC-TGTT----GTG--TTATGGTA-----CAA-ATACAA-AA-----------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAG--TTAAAT-CGA
gi|4 : tttatcaacacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTC-AAA--TA---TATGACAAA-CGG-GACGA-----TTT-CCA-TTCTCCATCGTCAACTTC------CCATATTTAT-GTA--CAATTATTCC-ATC-ATCAACCTGCACATT-TGTGC-A-----TGT-CTC-TCAA-CTT----ATTCGATACC-GAAAGAGC--TTGTTCTGCGTATGA----AATAGTTTTTTG---AA-TCAAGG---C---AGGCTACTT----A-----CAAAC-----------AA-----G-T-GTT-TTGCAAGGATTTCAACAGTCACA-TTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAATT-AGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTT-ATTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTT-GATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTT---TTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC-AGAGTGAGTTGAGAGT-CCGTGTTTTCCCA------------------------------TC---TGGGACTTAAATTAAACGA----AACTGGATTCACTGT----CGT-A-CTTTG----TTT-T-A-TTT-A------ATG-ATT-CAGGAAATTTGTGGCAACTGTCAT-CTAAAAAAA-----------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT----GGT-GGAAAAaaacat
gi|7 : TC------CCATATTTAC-GTGGGCAG-CAATCC-ATTAATC-GC---C----C-TG---------ATGTCGTCAA----CCG----ATTGAGTA-C-ATGAAAATAGTTGTTCTGTGTAT-----------TTTTTTCACCAA-TCGA-GAAAC---AGGTTAC-TG---A-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgcggtcctccatcatcgctTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAA-----TTGTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATA-TAAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGG----------AT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCATATTGAATAGAACTGG-------CAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-A-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 1 1111 22222222 1 1 1 2222222 1 11 11 1 1 11 1111111 333333333 33333333 111 11 222222222222222222222222 11 11 777777777777777777777777777777777777 11 66666666666666666666666666666666666666 3333333333 88888888888888888 111111 11 1 11 11 3333333 33 1 22 8888888888888888 111 111111 11 55555555555555555 111 111 3333333333333333 11 111 1111 2222222222222222222 11 22222 1 1 33333333333 111 22222222 33333333 222 11 1 11 11
lowQualScore : 1 3 0 4444 44444444 1 0 3 1 0 0 3 1 0000000 7 2 7 3 7 88 88 77 1 1 1 1 1 1 1 1 1 1 5 1 5 1 1 1 1 1 33 7777 1 1 0 9999999 1 1 1 6 0 0 0 8 1 0 0 8 0 1 888 888888888 8 66666666 333 11 88 999999999999999999999999 8 88 8 8 8 22 000000000000000000000000000000000000 8 8 0 11 66666666666666666666666666666666666666 8 9999999999 0 33333333333333333 2 0 3 3 0 3 999999 3 33 0 33 0 77 1 1111111 33 3 3 0 3 7 00 0 7 1 0000000000000000 1 0 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 6 77 5 11 5 6 1 1 8888 99999999999999999 555 444 8 5555555555555555 11 111 7 5555 1 6 1 3333333333333333333 1 1 33 555 55555 0 11 0 88888888888 999 99999999 0 9 66666666 9 2 3 0 444 00 5 66 7 1 88 1 1
lowQualScore : . . . .... ........ . . . . . . . . ....... . . . . . .. .. .. . . . . . . . . . . . . . . . . . . .. .... . . . ....... . . . . . . . . . . . . . . ... ......... . ........ ... .. .. ........................ . .. . . . .. .................................... . . . .. ...................................... . .......... . ................. . . . . . . ...... . .. . .. . .. . ....... .. . . . . . .. . . . ................ . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . . . . .... ................. ... ... . ................ .. ... . .... . . . ................... . . .. ... ..... . .. . ........... ... ........ . . ........ . . . . ... .. . .. . . .. . .
lowQualScore : 0 2 0 8888 00000000 0 0 2 2 0 0 2 0 7777777 3 0 3 7 3 33 33 33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 22 2222 0 0 7 5555555 0 4 0 4 8 8 8 0 4 8 8 0 8 4 888 444444444 0 22222222 666 00 88 444444444444444444444444 0 66 0 0 0 66 444444444444444444444444444444444444 0 0 8 00 88888888888888888888888888888888888888 0 0000000000 2 88888888888888888 5 2 2 5 2 5 000000 2 22 0 22 2 00 2 9999999 33 7 7 7 3 3 77 7 3 0 7777777777777777 0 6 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 6 99 7 00 3 7 0 0 2222 22222222222222222 222 000 2 6666666666666666 00 777 3 3333 7 7 7 0000000000000000000 0 2 88 555 00000 0 22 0 00000000000 444 00000000 8 2 22222222 2 5 2 2 000 88 0 00 3 0 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATGTCN---ACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATG-C----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T----A-----CAAACAAGT-C---------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATTGATGATGTGTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACNTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TGTG-NAGT--GTGTGTCT---ACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATG-C----A--GG--TTTTTT----ATTCGA-G---C---AGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAACTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-NTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGAT---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATA-TTTA-TTGAAAATAGACGTAAACGGCAA-ACTAACAACTC-A----T----TATGAC-AA-C-G----GAC-G-ATTT--CAG-TTCTC------TA-----ACGT-------CCAGATTTAT--TAA--AA-CATTCCTATT-ATT-CCCTGC----TATATGCAAGTCGATATATCTTCAATCT----ATTCGATA-CTACAAGAGT--TTGTTCTGCGTATGCC----A--GC--TTTAAT----A-TCAA-G---C---AGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA-TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA--TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTG-TT--A-TGCTATTCTTTTTACATTGATT-----------G-T--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGAGT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-T-ATT---TGGGATTTA-------CGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTTAAA-ACAACACACATCACATGAA--TAATGGCA-----C-ACCT-AAAACA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAACT--T----TATGAC-AA---------AC-GAA
gi|12 : A-----------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTTGG-AAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGGGT-CTGTGTTTGTC
gi|15 : acaTATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGT----TATGTCacctgatcccactctt
gi|17 : GGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A-TT-AA-ACAACAGGC
gi|2 : GTATATAGATGATGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT--ACG--TTATATATGAT-AAGC-GTGATGAC-TAACTTTGCAA--TCGT------CA-----ACTTT------CCCTTTCTAT-GTAAGTAA-TATACC-ACT-ATC-ACCTGC----T-TATG-GTGT--GTATATCT---CCCTGTTGATTCGATA-C-GCAAG-GC--ATGCTATGCGTATG------A--GGACTTTTTT----A---AA-G---CCGGAGGCCAC-TACTAA-----CAAAAAAGTTC---------------ATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA-GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTC-CTTGTTTGCAATTACAAATTATCACTAAGTCA---T--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTT--GACT-ACGG-TAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAGGT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-T-TTT---TTGGA-TTA-------TGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-ATT---G-ACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTT-AAAAAACATAGATTGTTAGACAA--GTAACG--------AATAGa
gi|3 : TAGCTTTC--TTA--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATTA-CGGTAATAC-AACAAC-C-ATGCCT----TGTGAC-AA-A-A----GAGAGAATTT--CAGCTTCTC------CA-----ACGTCATCTGTCTATATTCATTGTA-GCAA-CATTCC-ATC-ATC-ACCTGC---------A-AACT--GTGTGT-------------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATG-CTACGG--GG--TTTTTTTT--ATTCGG-GG--C---AGGCTAC-T----GGTGATCAAATTGGTATACCGTAATATATGCGGTTGTTGCAGTGGTTTCAACAG------------GT-G-GCATTTTCCAAA--TCTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTT-GTAGA---TCGTACTTTATACATGGATTTTGA--CAACAGTT-ATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-T-GTGTGGTCAGGGATACC--GTTTGCCTA--TCTC----TT---------ATTTTT-A-ATC---TG----TTA-------TG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTT-CATTCAATAC-TGT----TGTG--TTATGGTA-----C-AAAT-ACAAAA-----------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TAAAT-CGA
gi|4 : tttatcaacaccaatgatacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTC-AAA--TA---TATGACAAA-CGG----GAC-G-ATTT--CCA-TTCTCCATCGTCA-----ACTTC------CCATATTTAT-GTA--CAATTATTCC-ATC-ATCAACCTGCACATT-TGTG-CA-T--GTCTCTCA---ACTT----ATTCGATACC-GAAAGAGC--TTGTTCTGCGTATG-A----AATAG--TTTTTTG---AATCAAGG---C---AGGCTACTT----A-----CAAACAAGT-----------------GTT-TTGCAAGGATTTCAACAGTCACATTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAA-TTAGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTTG-ATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTTTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC--AGAGT---GAGTTGA---GAGTC-CG-T------------GTTTTC-CCATC---TGGGACTTAAATTAAACGA----AACTGGATTCACTGT----CGT-A-CTTTG----TTT-T-ATTT-AA---------TGATTCAGGAAATTTGTGGCAACTGTC-ATCTAAAAAAA-----------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT-G---GT-GGAAAAaaacat
gi|7 : --CGG-TCCTC------CATCATCGCTTC------CCATATTTAC-GTGGGCAG-CAATCC-ATTAATC-GCCC----------TG-A--T--GT-CGTCA---ACCG----ATTGAGTA-C-ATGAAAATAGTTGTTCTGTGTAT--------------TTTTTTCACCAATCGA-GAAAC---AGGTTAC-TG---A-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGGAT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCAT-ATTGAATAGAACTGG-------CAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 1 1111 22222222 1 1 1 2222222 1 11 11 1 1 1111111 333333333 33333333 111 11 222222222222222222222222 11 11 666666666666666666666666666666666666 11 5555555555555555555555555555555555555 2222222 88888888888888888888888888 111111 11 1 11 11 3333333 33 1 22 8888888888888888 111 111111 11 55555555555555555 111 111 3333333333333333 11 111 1111 2222222222222222222 11 22222 1 1 33333333333 111 22222222 33333333 222 11 1 11 11
lowQualScore : 1 3 0 4444 44444444 1 0 3 1 0 0 3 1 0000000 7 2 7 3 7 88 88 77 1 1 1 1 1 1 1 1 1 1 5 1 5 1 1 1 1 1 66 5555 1 1 0 9999999 1 1 1 6 0 0 0 8 1 0 0 8 0 1 888 888888888 8 66666666 333 11 88 999999999999999999999999 8 88 8 8 8 22 000000000000000000000000000000000000 8 8 0 11 2222222222222222222222222222222222222 8 2222222 99999999999999999999999999 2 0 3 3 0 3 999999 3 33 0 33 0 77 1 1111111 33 3 3 0 3 7 00 0 7 1 0000000000000000 1 0 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 6 77 5 11 5 6 1 1 7777 99999999999999999 555 444 8 5555555555555555 11 111 7 5555 1 6 1 3333333333333333333 1 1 33 555 55555 0 11 0 88888888888 999 99999999 0 9 66666666 9 2 3 0 222 00 5 66 7 1 88 1 1
lowQualScore : . . . .... ........ . . . . . . . . ....... . . . . . .. .. .. . . . . . . . . . . . . . . . . . . .. .... . . . ....... . . . . . . . . . . . . . . ... ......... . ........ ... .. .. ........................ . .. . . . .. .................................... . . . .. ..................................... . ....... .......................... . . . . . . ...... . .. . .. . .. . ....... .. . . . . . .. . . . ................ . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . . . . .... ................. ... ... . ................ .. ... . .... . . . ................... . . .. ... ..... . .. . ........... ... ........ . . ........ . . . . ... .. . .. . . .. . .
lowQualScore : 0 2 0 8888 00000000 0 0 2 2 0 0 2 0 7777777 3 0 3 7 3 33 33 33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 88 2222 0 0 7 5555555 0 4 0 4 8 8 8 0 4 8 8 0 8 4 888 444444444 0 22222222 666 00 88 000000000000000000000000 0 66 0 0 0 66 222222222222222222222222222222222222 0 0 8 00 0000000000000000000000000000000000000 0 0000000 55555555555555555555555555 5 2 2 5 2 5 000000 2 22 0 22 2 00 2 9999999 33 7 7 7 3 3 77 7 3 0 7777777777777777 0 6 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 6 99 7 00 3 7 0 0 0000 22222222222222222 222 000 2 6666666666666666 00 777 3 3333 7 7 7 0000000000000000000 0 2 88 555 00000 0 22 0 00000000000 444 00000000 8 2 22222222 2 5 2 2 000 88 0 00 3 0 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCNACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----TCGTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGAT---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATA-TTTA-TTGAAAATAGACGTAAACGGCAA-ACTAACAACTC-A----T----TATGAC-AA-C-G----GAC-G-ATTT--CAG-TTCTC------TA-----ACGT-------CCAGATTTAT--TAA--AA-CATTCCTATT-ATT-CCCTGC----TATATGCAAGTCGATATATCTTCAATCT----ATTCGATA-CTACAAGAGT--TTGTTCTGCGTATGC----C--AG--CTTTAA----TATCAA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA-TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA--TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTG-TT--A-TGCTATTCTTTTTACATTGATT-----------G-T--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGAGT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-T-ATT---TGGGATTTA-------CGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTTAAA-ACAACACACATCACATGAA--TAATGGCA-----C-ACCT-AAAACA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAACT--T----TATGAC-AA---------AC-GAA
gi|12 : A-----------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTTGG-AAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGGGT-CTGTGTTTGTC
gi|15 : acaTATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGT----TATGTCacctgatcccactctt
gi|17 : GGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A-TT-AA-ACAACAGGC
gi|2 : GTATATAGATGATGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT--ACG--TTATATATGAT-AAGC-GTGATGAC-TAACTTTGCAA--TCGT------CA-----ACTTT------CCCTTTCTAT-GTAAGTAA-TATACC-ACT-ATC-ACCTGC----T-TATG-GTGT--GTATA---TCTCCCTGTTGATTCGATA-C-GCAAG-GC--ATGCTATGCGTATG-----A--GGACTTTTTT----AA---A-G---CCGGAGGCCAC-T-A-----CTAAC-----------AA-----AAAAGTTCATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA-GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTC-CTTGTTTGCAATTACAAATTATCACTAAGTCA---T--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTT--GACT-ACGG-TAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAGGT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-T-TTT---TTGGA-TTA-------TGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-ATT---G-ACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTT-AAAAAACATAGATTGTTAGACAA--GTAACG--------AATAGa
gi|3 : TAGCTTTC--TTA--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATTA-CGGTAATAC-AACAAC-C-ATGCCT----TGTGAC-AA-A-A----GAGAGAATTT--CAGCTTCTC------CA-----ACGTCATCTGTCTATATTCATTGTA-GCAA-CATTCC-ATC-ATC-ACCTGC---------A-AACT--GTGTG---T----------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATGCTACGG--GG--TTTTTTTT--ATTCGG-GG--C---AGGCTAC-T-GGTGATCAAATTGGTATACCGTAATATATG-----CGGTTGTTGCAGTGGTTTCAACAG------------GT-G-GCATTTTCCAAA--TCTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTT-GTAGA---TCGTACTTTATACATGGATTTTGA--CAACAGTT-ATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-T-GTGTGGTCAGGGATACC--GTTTGCCTA--TCTC----TT---------ATTTTT-A-ATC---TG----TTA-------TG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTT-CATTCAATAC-TGT----TGTG--TTATGGTA-----C-AAAT-ACAAAA-----------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TAAAT-CGA
gi|4 : tttatcaacaccaatgatacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTC-AAA--TA---TATGACAAA-CGG----GAC-G-ATTT--CCA-TTCTCCATCGTCA-----ACTTC------CCATATTTAT-GTA--CAATTATTCC-ATC-ATCAACCTGCACATT-TGTG-CA-T--GTCTC---TCAACTT----ATTCGATACC-GAAAGAGC--TTGTTCTGCGTATGA----AATAG--TTTTTTG---AATCAAGG---C---AGGCTACTT-A-----CAAAC-----------AA-----G-----T-GTT-TTGCAAGGATTTCAACAGTCACATTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAA-TTAGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTTG-ATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTTTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC--AGAGT---GAGTTGA---GAGTC-CG-T------------GTTTTC-CCATC---TGGGACTTAAATTAAACGA----AACTGGATTCACTGT----CGT-A-CTTTG----TTT-T-ATTT-AA---------TGATTCAGGAAATTTGTGGCAACTGTC-ATCTAAAAAAA-----------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT-G---GT-GGAAAAaaacat
gi|7 : --CGG-TCCTC------CATCATCGCTTC------CCATATTTAC-GTGGGCAG-CAATCC-ATTAATC-GCCC----------TG-A--T--GT-CG---TCAACCG----ATTGAGTA-C-ATGAAAATAGTTGTTCTGTGTAT-------------TTTTTTCACCAATCGA-GAAAC---AGGTTAC-TGA-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGGAT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCAT-ATTGAATAGAACTGG-------CAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 1 1111 22222222 1 1 1 2222222 1 11 11 1 1 1111111 333333333 33333333 111 11 222222222222222222222222 11 11 555555555555555555555555555555555555 11 5555555555555555555555555555555555555 3333333333 88888888888888888 111111 11 1 11 11 3333333 33 1 22 8888888888888888 111 111111 11 55555555555555555 111 111 3333333333333333 11 111 1111 2222222222222222222 11 22222 1 1 33333333333 111 22222222 33333333 222 11 1 11 11
lowQualScore : 1 3 0 4444 44444444 1 0 3 1 0 0 3 1 0000000 7 2 7 3 7 88 88 77 1 1 1 1 1 1 1 1 1 1 5 1 5 1 1 1 1 1 66 5555 1 1 0 9999999 1 1 1 6 0 0 0 8 1 0 0 8 0 1 888 888888888 8 66666666 333 11 88 999999999999999999999999 8 88 8 8 8 22 777777777777777777777777777777777777 8 8 0 11 2222222222222222222222222222222222222 8 9999999999 0 33333333333333333 2 0 3 3 0 3 999999 3 33 0 33 0 77 1 1111111 33 3 3 0 3 7 00 0 7 1 0000000000000000 1 0 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 6 77 5 11 5 6 1 1 7777 99999999999999999 555 444 8 5555555555555555 11 111 7 5555 1 6 1 3333333333333333333 1 1 33 555 55555 0 11 0 88888888888 999 99999999 0 9 66666666 9 2 3 0 222 00 5 66 7 1 88 1 1
lowQualScore : . . . .... ........ . . . . . . . . ....... . . . . . .. .. .. . . . . . . . . . . . . . . . . . . .. .... . . . ....... . . . . . . . . . . . . . . ... ......... . ........ ... .. .. ........................ . .. . . . .. .................................... . . . .. ..................................... . .......... . ................. . . . . . . ...... . .. . .. . .. . ....... .. . . . . . .. . . . ................ . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . . . . .... ................. ... ... . ................ .. ... . .... . . . ................... . . .. ... ..... . .. . ........... ... ........ . . ........ . . . . ... .. . .. . . .. . .
lowQualScore : 0 2 0 8888 00000000 0 0 2 2 0 0 2 0 7777777 3 0 3 7 3 33 33 33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 88 2222 0 0 7 5555555 0 4 0 4 8 8 8 0 4 8 8 0 8 4 888 444444444 0 22222222 666 00 88 000000000000000000000000 0 66 0 0 0 66 444444444444444444444444444444444444 0 0 8 00 0000000000000000000000000000000000000 0 0000000000 2 88888888888888888 5 2 2 5 2 5 000000 2 22 0 22 2 00 2 9999999 33 7 7 7 3 3 77 7 3 0 7777777777777777 0 6 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 6 99 7 00 3 7 0 0 0000 22222222222222222 222 000 2 6666666666666666 00 777 3 3333 7 7 7 0000000000000000000 0 2 88 555 00000 0 22 0 00000000000 444 00000000 8 2 22222222 2 5 2 2 000 88 0 00 3 0 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T----A-----CAAACAAGT-C---------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGAT---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATA-TTTA-TTGAAAATAGACGTAAACGGCAA-ACTAACAACTC-A----T----TATGAC-AA-C-G----GAC-G-ATTT--CAG-TTCTC------TA-----ACGT-------CCAGATTTAT--TAA--AA-CATTCCTATT-ATT-CCCTGC----TATATGCAAGTCGATATATCTTCAATCT----ATTCGATA-CTACAAGAGT--TTGTTCTGCGTATGC----C--AG--CTTTAA----TATCAA-G---C---AGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA-TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA--TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTG-TT--A-TGCTATTCTTTTTACATTGATT-----------G-T--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGAGT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-T-ATT---TGGGATTTA-------CGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTTAAA-ACAACACACATCACATGAA--TAATGGCA-----C-ACCT-AAAACA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAACT--T----TATGAC-AA---------AC-GAA
gi|12 : A-----------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTTGG-AAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGGGT-CTGTGTTTGTC
gi|15 : acaTATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGT----TATGTCacctgatcccactctt
gi|17 : GGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A-TT-AA-ACAACAGGC
gi|2 : GTATATAGATGATGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT--ACG--TTATATATGAT-AAGC-GTGATGAC-TAACTTTGCAA--TCGT------CA-----ACTTT------CCCTTTCTAT-GTAAGTAA-TATACC-ACT-ATC-ACCTGC----T-TATG-GTGT--GTATA---TCTCCCTGTTGATTCGATA-C-GCAAG-GC--ATGCTATGCGTATG-----A--GGACTTTTTT----AA---A-G---CCGGAGGCCAC-TACTAA-----CAAAAAAGTTC---------------ATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA-GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTC-CTTGTTTGCAATTACAAATTATCACTAAGTCA---T--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTT--GACT-ACGG-TAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAGGT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-T-TTT---TTGGA-TTA-------TGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-ATT---G-ACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTT-AAAAAACATAGATTGTTAGACAA--GTAACG--------AATAGa
gi|3 : TAGCTTTC--TTA--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATTA-CGGTAATAC-AACAAC-C-ATGCCT----TGTGAC-AA-A-A----GAGAGAATTT--CAGCTTCTC------CA-----ACGTCATCTGTCTATATTCATTGTA-GCAA-CATTCC-ATC-ATC-ACCTGC---------A-AACT--GTGTG---T----------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATGCTACGG--GG--TTTTTTTT--ATTCGG-GG--C---AGGCTAC-T----GGTGATCAAATTGGTATACCGTAATATATGCGGTTGTTGCAGTGGTTTCAACAG------------GT-G-GCATTTTCCAAA--TCTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTT-GTAGA---TCGTACTTTATACATGGATTTTGA--CAACAGTT-ATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-T-GTGTGGTCAGGGATACC--GTTTGCCTA--TCTC----TT---------ATTTTT-A-ATC---TG----TTA-------TG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTT-CATTCAATAC-TGT----TGTG--TTATGGTA-----C-AAAT-ACAAAA-----------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TAAAT-CGA
gi|4 : tttatcaacaccaatgatacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTC-AAA--TA---TATGACAAA-CGG----GAC-G-ATTT--CCA-TTCTCCATCGTCA-----ACTTC------CCATATTTAT-GTA--CAATTATTCC-ATC-ATCAACCTGCACATT-TGTG-CA-T--GTCTC---TCAACTT----ATTCGATACC-GAAAGAGC--TTGTTCTGCGTATGA----AATAG--TTTTTTG---AATCAAGG---C---AGGCTACTT----A-----CAAACAAGT-----------------GTT-TTGCAAGGATTTCAACAGTCACATTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAA-TTAGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTTG-ATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTTTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC--AGAGT---GAGTTGA---GAGTC-CG-T------------GTTTTC-CCATC---TGGGACTTAAATTAAACGA----AACTGGATTCACTGT----CGT-A-CTTTG----TTT-T-ATTT-AA---------TGATTCAGGAAATTTGTGGCAACTGTC-ATCTAAAAAAA-----------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT-G---GT-GGAAAAaaacat
gi|7 : --CGG-TCCTC------CATCATCGCTTC------CCATATTTAC-GTGGGCAG-CAATCC-ATTAATC-GCCC----------TG-A--T--GT-CG---TCAACCG----ATTGAGTA-C-ATGAAAATAGTTGTTCTGTGTAT-------------TTTTTTCACCAATCGA-GAAAC---AGGTTAC-TG---A-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGGAT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCAT-ATTGAATAGAACTGG-------CAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 1 1111 22222222 1 1 1 2222222 1 11 11 1 1 1111111 333333333 33333333 111 11 222222222222222222222222 11 11 555555555555555555555555555555555555 11 5555555555555555555555555555555555555 2222222 88888888888888888888888888 111111 11 1 11 11 3333333 33 1 22 8888888888888888 111 111111 11 55555555555555555 111 111 22222222222222222 11 111 1111 2222222222222222222 11 22222 1 1 33333333333 111 22222222 33333333 222 11 1 11 11
lowQualScore : 1 3 0 4444 44444444 1 0 3 1 0 0 3 1 0000000 7 2 7 3 7 88 88 77 1 1 1 1 1 1 1 1 1 1 5 1 5 1 1 1 1 1 66 5555 1 1 0 9999999 1 1 1 6 0 0 0 8 1 0 0 8 0 1 888 888888888 8 66666666 333 11 88 999999999999999999999999 8 88 8 8 8 22 777777777777777777777777777777777777 8 8 0 11 2222222222222222222222222222222222222 8 2222222 99999999999999999999999999 2 0 3 3 0 3 999999 3 33 0 33 0 77 1 1111111 33 3 3 0 3 7 00 0 7 1 0000000000000000 1 0 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 6 77 5 11 5 6 1 1 7777 99999999999999999 555 444 8 99999999999999999 11 111 7 5555 1 6 1 3333333333333333333 1 1 33 555 55555 0 11 0 88888888888 999 99999999 0 9 66666666 9 2 3 0 222 00 5 66 7 1 88 1 1
lowQualScore : . . . .... ........ . . . . . . . . ....... . . . . . .. .. .. . . . . . . . . . . . . . . . . . . .. .... . . . ....... . . . . . . . . . . . . . . ... ......... . ........ ... .. .. ........................ . .. . . . .. .................................... . . . .. ..................................... . ....... .......................... . . . . . . ...... . .. . .. . .. . ....... .. . . . . . .. . . . ................ . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . . . . .... ................. ... ... . ................. .. ... . .... . . . ................... . . .. ... ..... . .. . ........... ... ........ . . ........ . . . . ... .. . .. . . .. . .
lowQualScore : 0 2 0 8888 00000000 0 0 2 2 0 0 2 0 7777777 3 0 3 7 3 33 33 33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 88 2222 0 0 7 5555555 0 4 0 4 8 8 8 0 4 8 8 0 8 4 888 444444444 0 22222222 666 00 88 000000000000000000000000 0 66 0 0 0 66 444444444444444444444444444444444444 0 0 8 00 0000000000000000000000000000000000000 0 0000000 55555555555555555555555555 5 2 2 5 2 5 000000 2 22 0 22 2 00 2 9999999 33 7 7 7 3 3 77 7 3 0 7777777777777777 0 6 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 6 99 7 00 3 7 0 0 0000 22222222222222222 222 000 2 66666666666666666 00 777 3 3333 7 7 7 0000000000000000000 0 2 88 555 00000 0 22 0 00000000000 444 00000000 8 2 22222222 2 5 2 2 000 88 0 00 3 0 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----TCGTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGAT---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATA-TTTA-TTGAAAATAGACGTAAACGGCAA-ACTAACAACTC-A----T----TATGAC-AA-C-G----GAC-G-ATTT--CAG-TTCTC------TA-----ACGT-------CCAGATTTAT--TAA--AA-CATTCCTATT-ATT-CCCTGC----TATATGCAAGTCGATATATCTTCAATCT----ATTCGATA-CTACAAGAGT--TTGTTCTGCGTATGC----C--AG--CTTTAA----TATCAA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA-TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA--TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTG-TT--A-TGCTATTCTTTTTACATTGATT-----------G-T--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGAGT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-T-ATT---TGGGATTT-------ACGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTTAAA-ACAACACACATCACATGAA--TAATGGCA-----C-ACCT-AAAACA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAACT--T----TATGAC-AA---------AC-GAA
gi|12 : A-----------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTTGG-AAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGGGT-CTGTGTTTGTC
gi|15 : acaTATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGT----TATGTCacctgatcccactctt
gi|17 : GGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A-TT-AA-ACAACAGGC
gi|2 : GTATATAGATGATGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT--ACG--TTATATATGAT-AAGC-GTGATGAC-TAACTTTGCAA--TCGT------CA-----ACTTT------CCCTTTCTAT-GTAAGTAA-TATACC-ACT-ATC-ACCTGC----T-TATG-GTGT--GTATA---TCTCCCTGTTGATTCGATA-C-GCAAG-GC--ATGCTATGCGTATG-----A--GGACTTTTTT----AA---A-G---CCGGAGGCCAC-T-A-----CTAAC-----------AA-----AAAAGTTCATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA-GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTC-CTTGTTTGCAATTACAAATTATCACTAAGTCA---T--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTT--GACT-ACGG-TAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAGGT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-T-TTT---TTGGA-TT-------ATGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-ATT---G-ACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTT-AAAAAACATAGATTGTTAGACAA--GTAACG--------AATAGa
gi|3 : TAGCTTTC--TTA--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATTA-CGGTAATAC-AACAAC-C-ATGCCT----TGTGAC-AA-A-A----GAGAGAATTT--CAGCTTCTC------CA-----ACGTCATCTGTCTATATTCATTGTA-GCAA-CATTCC-ATC-ATC-ACCTGC---------A-AACT--GTGTG---T----------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATGCTACGG--GG--TTTTTTTT--ATTCGG-GG--C---AGGCTAC-T-GGTGATCAAATTGGTATACCGTAATATATG-----CGGTTGTTGCAGTGGTTTCAACAG------------GT-G-GCATTTTCCAAA--TCTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTT-GTAGA---TCGTACTTTATACATGGATTTTGA--CAACAGTT-ATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-T-GTGTGGTCAGGGATACC--GTTTGCCTA--TCTC----TT---------ATTTTT-A-ATC---TG----TT-------ATG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTT-CATTCAATAC-TGT----TGTG--TTATGGTA-----C-AAAT-ACAAAA-----------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TAAAT-CGA
gi|4 : tttatcaacaccaatgatacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTC-AAA--TA---TATGACAAA-CGG----GAC-G-ATTT--CCA-TTCTCCATCGTCA-----ACTTC------CCATATTTAT-GTA--CAATTATTCC-ATC-ATCAACCTGCACATT-TGTG-CA-T--GTCTC---TCAACTT----ATTCGATACC-GAAAGAGC--TTGTTCTGCGTATGA----AATAG--TTTTTTG---AATCAAGG---C---AGGCTACTT-A-----CAAAC-----------AA-----G-----T-GTT-TTGCAAGGATTTCAACAGTCACATTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAA-TTAGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTTG-ATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTTTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC--AGAGT---GAGTTGA---GAGTC-CG-T------------GTTTTC-CCATC---TGGGACTTAAATTAAACGA----AACTGGATTCACTG-T---CG-TA-CTTTG----TTT-T-ATTT-AA---------TGATTCAGGAAATTTGTGGCAACTGTC-ATCTAAAAAAA-----------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT-G---GT-GGAAAAaaacat
gi|7 : --CGG-TCCTC------CATCATCGCTTC------CCATATTTAC-GTGGGCAG-CAATCC-ATTAATC-GCCC----------TG-A--T--GT-CG---TCAACCG----ATTGAGTA-C-ATGAAAATAGTTGTTCTGTGTAT-------------TTTTTTCACCAATCGA-GAAAC---AGGTTAC-TGA-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGGAT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCAT-ATTGAATAGAACTG-------GCAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 1 1111 22222222 1 1 1 2222222 1 11 11 1 1 1111111 333333333 33333333 111 11 222222222222222222222222 11 11 555555555555555555555555555555555555 11 5555555555555555555555555555555555555 3333333333 88888888888888888 111111 11 1 11 11 3333333 33 1 22 8888888888888888 111 111111 11 55555555555555555 111 111 3333333333333333 11 111 1111 2222222222222222222 11 22222 1 1 33333333333 111 22222222 33333333 222 11 1 11 11
lowQualScore : 1 3 0 4444 44444444 1 0 3 1 0 0 3 1 0000000 7 2 7 3 7 88 88 77 1 1 1 1 1 1 1 1 1 1 5 1 5 1 1 1 1 1 66 5555 1 1 0 9999999 1 1 1 6 0 0 0 8 1 0 0 8 0 1 888 888888888 8 66666666 333 11 88 999999999999999999999999 8 88 8 8 8 22 777777777777777777777777777777777777 8 8 0 11 2222222222222222222222222222222222222 8 9999999999 0 33333333333333333 2 0 3 3 0 3 999999 3 33 0 33 0 77 1 1111111 33 3 3 0 3 7 00 0 7 1 0000000000000000 1 0 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 6 77 5 11 5 6 1 1 7777 99999999999999999 555 444 8 5555555555555555 11 111 7 5555 1 6 1 3333333333333333333 1 1 33 555 55555 0 11 0 88888888888 999 99999999 0 9 66666666 9 2 3 0 222 00 5 66 7 1 88 1 1
lowQualScore : . . . .... ........ . . . . . . . . ....... . . . . . .. .. .. . . . . . . . . . . . . . . . . . . .. .... . . . ....... . . . . . . . . . . . . . . ... ......... . ........ ... .. .. ........................ . .. . . . .. .................................... . . . .. ..................................... . .......... . ................. . . . . . . ...... . .. . .. . .. . ....... .. . . . . . .. . . . ................ . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . . . . .... ................. ... ... . ................ .. ... . .... . . . ................... . . .. ... ..... . .. . ........... ... ........ . . ........ . . . . ... .. . .. . . .. . .
lowQualScore : 0 2 0 8888 00000000 0 0 2 2 0 0 2 0 7777777 3 0 3 7 3 33 33 33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 88 2222 0 0 7 5555555 0 4 0 4 8 8 8 0 4 8 8 0 8 4 888 444444444 0 22222222 666 00 88 000000000000000000000000 0 66 0 0 0 66 444444444444444444444444444444444444 0 0 8 00 0000000000000000000000000000000000000 0 0000000000 2 88888888888888888 5 2 2 5 2 5 000000 2 22 0 22 2 00 2 9999999 33 7 7 7 3 3 77 7 3 0 7777777777777777 0 6 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 6 99 7 00 3 7 0 0 0000 22222222222222222 222 000 2 6666666666666666 00 777 3 3333 7 7 7 0000000000000000000 0 2 88 555 00000 0 22 0 00000000000 444 00000000 8 2 22222222 2 5 2 2 000 88 0 00 3 0 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T----A-----CAAACAAGT-C---------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGAT---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATA-TTTA-TTGAAAATAGACGTAAACGGCAA-ACTAACAACTC-A----T----TATGAC-AA-C-G----GAC-G-ATTT--CAG-TTCTC------TA-----ACGT-------CCAGATTTAT--TAA--AA-CATTCCTATT-ATT-CCCTGC----TATATGCAAGTCGATATATCTTCAATCT----ATTCGATA-CTACAAGAGT--TTGTTCTGCGTATGC----C--AG--CTTTAA----TATCAA-G---C---AGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA-TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA--TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTG-TT--A-TGCTATTCTTTTTACATTGATT-----------G-T--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGAGT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-T-ATT---TGGGATTTA-------CGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTTAAA-ACAACACACATCACATGAA--TAATGGCA-----C-ACCT-AAAACA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAACT--T----TATGAC-AA---------AC-GAA
gi|12 : A-----------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTTGG-AAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGGGT-CTGTGTTTGTC
gi|15 : acaTATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGT----TATGTCacctgatcccactctt
gi|17 : GGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A-TT-AA-ACAACAGGC
gi|2 : GTATATAGATGATGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT--ACG--TTATATATGAT-AAGC-GTGATGAC-TAACTTTGCAA--TCGT------CA-----ACTTT------CCCTTTCTAT-GTAAGTAA-TATACC-ACT-ATC-ACCTGC----T-TATG-GTGT--GTATA---TCTCCCTGTTGATTCGATA-C-GCAAG-GC--ATGCTATGCGTATG-----A--GGACTTTTTT----AA---A-G---CCGGAGGCCAC-TACTAA-----CAAAAAAGTTC---------------ATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA-GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTC-CTTGTTTGCAATTACAAATTATCACTAAGTCA---T--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTT--GACT-ACGG-TAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAGGT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-T-TTT---TTGGA-TTA-------TGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-ATT---G-ACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTT-AAAAAACATAGATTGTTAGACAA--GTAACG--------AATAGa
gi|3 : TAGCTTTC--TTA--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATTA-CGGTAATAC-AACAAC-C-ATGCCT----TGTGAC-AA-A-A----GAGAGAATTT--CAGCTTCTC------CA-----ACGTCATCTGTCTATATTCATTGTA-GCAA-CATTCC-ATC-ATC-ACCTGC---------A-AACT--GTGTG---T----------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATGCTACGG--GG--TTTTTTTT--ATTCGG-GG--C---AGGCTAC-T----GGTGATCAAATTGGTATACCGTAATATATGCGGTTGTTGCAGTGGTTTCAACAG------------GT-G-GCATTTTCCAAA--TCTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTT-GTAGA---TCGTACTTTATACATGGATTTTGA--CAACAGTT-ATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-T-GTGTGGTCAGGGATACC--GTTTGCCTA--TCTC----TT---------ATTTTT-A-ATC---TG----TTA-------TG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTT-CATTCAATAC-TGT----TGTG--TTATGGTA-----C-AAAT-ACAAAA-----------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TAAAT-CGA
gi|4 : tttatcaacaccaatgatacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTC-AAA--TA---TATGACAAA-CGG----GAC-G-ATTT--CCA-TTCTCCATCGTCA-----ACTTC------CCATATTTAT-GTA--CAATTATTCC-ATC-ATCAACCTGCACATT-TGTG-CA-T--GTCTC---TCAACTT----ATTCGATACC-GAAAGAGC--TTGTTCTGCGTATGA----AATAG--TTTTTTG---AATCAAGG---C---AGGCTACTT----A-----CAAACAAGT-----------------GTT-TTGCAAGGATTTCAACAGTCACATTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAA-TTAGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTTG-ATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTTTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC--AGAGT---GAGTTGA---GAGTC-CG-T------------GTTTTC-CCATC---TGGGACTTAAATTAAACGA----AACTGGATTCACTGT----CGT-A-CTTTG----TTT-T-ATTT-AA---------TGATTCAGGAAATTTGTGGCAACTGTC-ATCTAAAAAAA-----------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT-G---GT-GGAAAAaaacat
gi|7 : --CGG-TCCTC------CATCATCGCTTC------CCATATTTAC-GTGGGCAG-CAATCC-ATTAATC-GCCC----------TG-A--T--GT-CG---TCAACCG----ATTGAGTA-C-ATGAAAATAGTTGTTCTGTGTAT-------------TTTTTTCACCAATCGA-GAAAC---AGGTTAC-TG---A-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGGAT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCAT-ATTGAATAGAACTGG-------CAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 1 1111 22222222 1 1 1 2222222 1 11 11 1 1 1111111 333333333 33333333 111 11 222222222222222222222222 11 11 555555555555555555555555555555555555 11 5555555555555555555555555555555555555 2222222 88888888888888888888888888 111111 11 1 11 11 3333333 33 1 22 8888888888888888 111 111111 11 55555555555555555 111 111 22222222222222222 11 111 1111 2222222222222222222 11 22222 1 1 33333333333 111 22222222 33333333 222 11 1 11 11
lowQualScore : 1 3 0 4444 44444444 1 0 3 1 0 0 3 1 0000000 7 2 7 3 7 88 88 77 1 1 1 1 1 1 1 1 1 1 5 1 5 1 1 1 1 1 66 5555 1 1 0 9999999 1 1 1 6 0 0 0 8 1 0 0 8 0 1 888 888888888 8 66666666 333 11 88 999999999999999999999999 8 88 8 8 8 22 777777777777777777777777777777777777 8 8 0 11 2222222222222222222222222222222222222 8 2222222 99999999999999999999999999 2 0 3 3 0 3 999999 3 33 0 33 0 77 1 1111111 33 3 3 0 3 7 00 0 7 1 0000000000000000 1 0 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 6 77 5 11 5 6 1 1 7777 99999999999999999 555 444 8 99999999999999999 11 111 7 5555 1 6 1 3333333333333333333 1 1 33 555 55555 0 11 0 88888888888 999 99999999 0 9 66666666 9 2 3 0 222 00 5 66 7 1 88 1 1
lowQualScore : . . . .... ........ . . . . . . . . ....... . . . . . .. .. .. . . . . . . . . . . . . . . . . . . .. .... . . . ....... . . . . . . . . . . . . . . ... ......... . ........ ... .. .. ........................ . .. . . . .. .................................... . . . .. ..................................... . ....... .......................... . . . . . . ...... . .. . .. . .. . ....... .. . . . . . .. . . . ................ . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . . . . .... ................. ... ... . ................. .. ... . .... . . . ................... . . .. ... ..... . .. . ........... ... ........ . . ........ . . . . ... .. . .. . . .. . .
lowQualScore : 0 2 0 8888 00000000 0 0 2 2 0 0 2 0 7777777 3 0 3 7 3 33 33 33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 88 2222 0 0 7 5555555 0 4 0 4 8 8 8 0 4 8 8 0 8 4 888 444444444 0 22222222 666 00 88 000000000000000000000000 0 66 0 0 0 66 444444444444444444444444444444444444 0 0 8 00 0000000000000000000000000000000000000 0 0000000 55555555555555555555555555 5 2 2 5 2 5 000000 2 22 0 22 2 00 2 9999999 33 7 7 7 3 3 77 7 3 0 7777777777777777 0 6 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 6 99 7 00 3 7 0 0 0000 22222222222222222 222 000 2 66666666666666666 00 777 3 3333 7 7 7 0000000000000000000 0 2 88 555 00000 0 22 0 00000000000 444 00000000 8 2 22222222 2 5 2 2 000 88 0 00 3 0 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----TCGTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGAT---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATA-TTTA-TTGAAAATAGACGTAAACGGCAA-ACTAACAACTC-A----T----TATGAC-AA-C-G----GAC-G-ATTT--CAG-TTCTC------TA-----ACGT-------CCAGATTTAT--TAA--AA-CATTCCTATT-ATT-CCCTGC----TATATGCAAGTCGATATATCTTCAATCT----ATTCGATA-CTACAAGAGT--TTGTTCTGCGTATGC----C--AG--CTTTAA----TATCAA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA-TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA--TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTG-TT--A-TGCTATTCTTTTTACATTGATT-----------G-T--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGAGT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-T-ATT---TGGGATTT-------ACGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTTAAA-ACAACACACATCACATGAA--TAATGGCA-----C-ACCT-AAAACA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAACT--T----TATGAC-AA---------AC-GAA
gi|12 : A-----------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTTGG-AAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGGGT-CTGTGTTTGTC
gi|15 : acaTATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGT----TATGTCacctgatcccactctt
gi|17 : GGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A-TT-AA-ACAACAGGC
gi|2 : GTATATAGATGATGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT--ACG--TTATATATGAT-AAGC-GTGATGAC-TAACTTTGCAA--TCGT------CA-----ACTTT------CCCTTTCTAT-GTAAGTAA-TATACC-ACT-ATC-ACCTGC----T-TATG-GTGT--GTATA---TCTCCCTGTTGATTCGATA-C-GCAAG-GC--ATGCTATGCGTATG-----A--GGACTTTTTT----AA---A-G---CCGGAGGCCAC-T-A-----CTAAC-----------AA-----AAAAGTTCATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA-GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTC-CTTGTTTGCAATTACAAATTATCACTAAGTCA---T--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTT--GACT-ACGG-TAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAGGT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-T-TTT---TTGGA-TT-------ATGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-ATT---G-ACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTT-AAAAAACATAGATTGTTAGACAA--GTAACG--------AATAGa
gi|3 : TAGCTTTC--TTA--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATTA-CGGTAATAC-AACAAC-C-ATGCCT----TGTGAC-AA-A-A----GAGAGAATTT--CAGCTTCTC------CA-----ACGTCATCTGTCTATATTCATTGTA-GCAA-CATTCC-ATC-ATC-ACCTGC---------A-AACT--GTGTG---T----------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATGCTACGG--GG--TTTTTTTT--ATTCGG-GG--C---AGGCTAC-T-GGTGATCAAATTGGTATACCGTAATATATG-----CGGTTGTTGCAGTGGTTTCAACAG------------GT-G-GCATTTTCCAAA--TCTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTT-GTAGA---TCGTACTTTATACATGGATTTTGA--CAACAGTT-ATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-T-GTGTGGTCAGGGATACC--GTTTGCCTA--TCTC----TT---------ATTTTT-A-ATC---TG----TT-------ATG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTT-CATTCAATAC-TGT----TGTG--TTATGGTA-----C-AAAT-ACAAAA-----------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TAAAT-CGA
gi|4 : tttatcaacaccaatgatacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTC-AAA--TA---TATGACAAA-CGG----GAC-G-ATTT--CCA-TTCTCCATCGTCA-----ACTTC------CCATATTTAT-GTA--CAATTATTCC-ATC-ATCAACCTGCACATT-TGTG-CA-T--GTCTC---TCAACTT----ATTCGATACC-GAAAGAGC--TTGTTCTGCGTATGA----AATAG--TTTTTTG---AATCAAGG---C---AGGCTACTT-A-----CAAAC-----------AA-----G-----T-GTT-TTGCAAGGATTTCAACAGTCACATTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAA-TTAGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTTG-ATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTTTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC--AGAGT---GAGTTGA---GAGTC-CG-T------------GTTTTC-CCATC---TGGGACTTAAATTAAACGA----AACTGGATTCACTG-T---CG-TA-CTTTG----TTT-T-ATTT-AA---------TGATTCAGGAAATTTGTGGCAACTGTC-ATCTAAAAAAA-----------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT-G---GT-GGAAAAaaacat
gi|7 : --CGG-TCCTC------CATCATCGCTTC------CCATATTTAC-GTGGGCAG-CAATCC-ATTAATC-GCCC----------TG-A--T--GT-CG---TCAACCG----ATTGAGTA-C-ATGAAAATAGTTGTTCTGTGTAT-------------TTTTTTCACCAATCGA-GAAAC---AGGTTAC-TGA-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGGAT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCAT-ATTGAATAGAACTG-------GCAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 1 1111 22222222 1 1 1 2222222 1 11 11 1 1 1111111 333333333 33333333 111 11 222222222222222222222222 11 11 555555555555555555555555555555555555 11 5555555555555555555555555555555555555 3333333333 88888888888888888 111111 11 1 11 11 3333333 33 1 22 8888888888888888 111 111111 11 55555555555555555 111 111 3333333333333333 11 111 1111 2222222222222222222 11 22222 1 1 33333333333 111 22222222 33333333 222 11 1 11 11
lowQualScore : 1 3 0 4444 44444444 1 0 3 1 0 0 3 1 0000000 7 2 7 3 7 88 88 77 1 1 1 1 1 1 1 1 1 1 5 1 5 1 1 1 1 1 66 5555 1 1 0 9999999 1 1 1 6 0 0 0 8 1 0 0 8 0 1 888 888888888 8 66666666 333 11 88 999999999999999999999999 8 88 8 8 8 22 777777777777777777777777777777777777 8 8 0 11 2222222222222222222222222222222222222 8 9999999999 0 33333333333333333 2 0 3 3 0 3 999999 3 33 0 33 0 77 1 1111111 33 3 3 0 3 7 00 0 7 1 0000000000000000 1 0 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 6 77 5 11 5 6 1 1 7777 99999999999999999 555 444 8 5555555555555555 11 111 7 5555 1 6 1 3333333333333333333 1 1 33 555 55555 0 11 0 88888888888 999 99999999 0 9 66666666 9 2 3 0 222 00 5 66 7 1 88 1 1
lowQualScore : . . . .... ........ . . . . . . . . ....... . . . . . .. .. .. . . . . . . . . . . . . . . . . . . .. .... . . . ....... . . . . . . . . . . . . . . ... ......... . ........ ... .. .. ........................ . .. . . . .. .................................... . . . .. ..................................... . .......... . ................. . . . . . . ...... . .. . .. . .. . ....... .. . . . . . .. . . . ................ . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . . . . .... ................. ... ... . ................ .. ... . .... . . . ................... . . .. ... ..... . .. . ........... ... ........ . . ........ . . . . ... .. . .. . . .. . .
lowQualScore : 0 2 0 8888 00000000 0 0 2 2 0 0 2 0 7777777 3 0 3 7 3 33 33 33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 88 2222 0 0 7 5555555 0 4 0 4 8 8 8 0 4 8 8 0 8 4 888 444444444 0 22222222 666 00 88 000000000000000000000000 0 66 0 0 0 66 444444444444444444444444444444444444 0 0 8 00 0000000000000000000000000000000000000 0 0000000000 2 88888888888888888 5 2 2 5 2 5 000000 2 22 0 22 2 00 2 9999999 33 7 7 7 3 3 77 7 3 0 7777777777777777 0 6 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 6 99 7 00 3 7 0 0 0000 22222222222222222 222 000 2 6666666666666666 00 777 3 3333 7 7 7 0000000000000000000 0 2 88 555 00000 0 22 0 00000000000 444 00000000 8 2 22222222 2 5 2 2 000 88 0 00 3 0 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T----A-----CAAACAAGT-C---------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTTA-------CGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGAT---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATA-TTTA-TTGAAAATAGACGTAAACGGCAA-ACTAACAACTC-A----T----TATGAC-AA-C-G----GAC-G-ATTT--CAG-TTCTC------TA-----ACGT-------CCAGATTTAT--TAA--AA-CATTCCTATT-ATT-CCCTGC----TATATGCAAGTCGATATATCTTCAATCT----ATTCGATA-CTACAAGAGT--TTGTTCTGCGTATGC----C--AG--CTTTAA----TATCAA-G---C---AGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA-TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA--TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTG-TT--A-TGCTATTCTTTTTACATTGATT-----------G-T--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGAGT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-T-ATT---TGGGATTTA-------CGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTTAAA-ACAACACACATCACATGAA--TAATGGCA-----C-ACCT-AAAACA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAACT--T----TATGAC-AA---------AC-GAA
gi|12 : A-----------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTTGG-AAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGGGT-CTGTGTTTGTC
gi|15 : acaTATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGT----TATGTCacctgatcccactctt
gi|17 : GGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A-TT-AA-ACAACAGGC
gi|2 : GTATATAGATGATGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT--ACG--TTATATATGAT-AAGC-GTGATGAC-TAACTTTGCAA--TCGT------CA-----ACTTT------CCCTTTCTAT-GTAAGTAA-TATACC-ACT-ATC-ACCTGC----T-TATG-GTGT--GTATA---TCTCCCTGTTGATTCGATA-C-GCAAG-GC--ATGCTATGCGTATG-----A--GGACTTTTTT----AA---A-G---CCGGAGGCCAC-TACTAA-----CAAAAAAGTTC---------------ATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA-GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTC-CTTGTTTGCAATTACAAATTATCACTAAGTCA---T--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTT--GACT-ACGG-TAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAGGT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-T-TTT---TTGGA-TTA-------TGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-ATT---G-ACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTT-AAAAAACATAGATTGTTAGACAA--GTAACG--------AATAGa
gi|3 : TAGCTTTC--TTA--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATTA-CGGTAATAC-AACAAC-C-ATGCCT----TGTGAC-AA-A-A----GAGAGAATTT--CAGCTTCTC------CA-----ACGTCATCTGTCTATATTCATTGTA-GCAA-CATTCC-ATC-ATC-ACCTGC---------A-AACT--GTGTG---T----------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATGCTACGG--GG--TTTTTTTT--ATTCGG-GG--C---AGGCTAC-T----GGTGATCAAATTGGTATACCGTAATATATGCGGTTGTTGCAGTGGTTTCAACAG------------GT-G-GCATTTTCCAAA--TCTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTT-GTAGA---TCGTACTTTATACATGGATTTTGA--CAACAGTT-ATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-T-GTGTGGTCAGGGATACC--GTTTGCCTA--TCTC----TT---------ATTTTT-A-ATC---TG----TTA-------TG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTT-CATTCAATAC-TGT----TGTG--TTATGGTA-----C-AAAT-ACAAAA-----------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TAAAT-CGA
gi|4 : tttatcaacaccaatgatacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTC-AAA--TA---TATGACAAA-CGG----GAC-G-ATTT--CCA-TTCTCCATCGTCA-----ACTTC------CCATATTTAT-GTA--CAATTATTCC-ATC-ATCAACCTGCACATT-TGTG-CA-T--GTCTC---TCAACTT----ATTCGATACC-GAAAGAGC--TTGTTCTGCGTATGA----AATAG--TTTTTTG---AATCAAGG---C---AGGCTACTT----A-----CAAACAAGT-----------------GTT-TTGCAAGGATTTCAACAGTCACATTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAA-TTAGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTTG-ATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTTTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC--AGAGT---GAGTTGA---GAGTC-CG-T------------GTTTTC-CCATC---TGGGACTTAAATTAAACGA----AACTGGATTCACTGT----CGT-A-CTTTG----TTT-T-ATTT-AA---------TGATTCAGGAAATTTGTGGCAACTGTC-ATCTAAAAAAA-----------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT-G---GT-GGAAAAaaacat
gi|7 : --CGG-TCCTC------CATCATCGCTTC------CCATATTTAC-GTGGGCAG-CAATCC-ATTAATC-GCCC----------TG-A--T--GT-CG---TCAACCG----ATTGAGTA-C-ATGAAAATAGTTGTTCTGTGTAT-------------TTTTTTCACCAATCGA-GAAAC---AGGTTAC-TG---A-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGGAT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCAT-ATTGAATAGAACTGG-------CAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 1 1111 22222222 1 1 1 2222222 1 11 11 1 1 1111111 333333333 33333333 111 11 222222222222222222222222 11 11 555555555555555555555555555555555555 11 5555555555555555555555555555555555555 2222222 88888888888888888888888888 111111 11 1 11 11 3333333 33 1 22 8888888888888888 111 111111 11 55555555555555555 111 111 22222222222222222 11 111 1111 2222222222222222222 11 22222 1 1 33333333333 111 22222222 33333333 222 11 1 11 11
lowQualScore : 1 3 0 4444 44444444 1 0 3 1 0 0 3 1 0000000 7 2 7 3 7 88 88 77 1 1 1 1 1 1 1 1 1 1 5 1 5 1 1 1 1 1 66 5555 1 1 0 9999999 1 1 1 6 0 0 0 8 1 0 0 8 0 1 888 888888888 8 66666666 333 11 88 999999999999999999999999 8 88 8 8 8 22 777777777777777777777777777777777777 8 8 0 11 2222222222222222222222222222222222222 8 2222222 99999999999999999999999999 2 0 3 3 0 3 999999 3 33 0 33 0 77 1 1111111 33 3 3 0 3 7 00 0 7 1 0000000000000000 1 0 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 6 77 5 11 5 6 1 1 7777 99999999999999999 555 444 8 99999999999999999 11 111 7 5555 1 6 1 3333333333333333333 1 1 33 555 55555 0 11 0 88888888888 999 99999999 0 9 66666666 9 2 3 0 222 00 5 66 7 1 88 1 1
lowQualScore : . . . .... ........ . . . . . . . . ....... . . . . . .. .. .. . . . . . . . . . . . . . . . . . . .. .... . . . ....... . . . . . . . . . . . . . . ... ......... . ........ ... .. .. ........................ . .. . . . .. .................................... . . . .. ..................................... . ....... .......................... . . . . . . ...... . .. . .. . .. . ....... .. . . . . . .. . . . ................ . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . . . . .... ................. ... ... . ................. .. ... . .... . . . ................... . . .. ... ..... . .. . ........... ... ........ . . ........ . . . . ... .. . .. . . .. . .
lowQualScore : 0 2 0 8888 00000000 0 0 2 2 0 0 2 0 7777777 3 0 3 7 3 33 33 33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 88 2222 0 0 7 5555555 0 4 0 4 8 8 8 0 4 8 8 0 8 4 888 444444444 0 22222222 666 00 88 000000000000000000000000 0 66 0 0 0 66 444444444444444444444444444444444444 0 0 8 00 0000000000000000000000000000000000000 0 0000000 55555555555555555555555555 5 2 2 5 2 5 000000 2 22 0 22 2 00 2 9999999 33 7 7 7 3 3 77 7 3 0 7777777777777777 0 6 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 6 99 7 00 3 7 0 0 0000 22222222222222222 222 000 2 66666666666666666 00 777 3 3333 7 7 7 0000000000000000000 0 2 88 555 00000 0 22 0 00000000000 444 00000000 8 2 22222222 2 5 2 2 000 88 0 00 3 0 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----TCGTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGAT---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATA-TTTA-TTGAAAATAGACGTAAACGGCAA-ACTAACAACTC-A----T----TATGAC-AA-C-G----GAC-G-ATTT--CAG-TTCTC------TA-----ACGT-------CCAGATTTAT--TAA--AA-CATTCCTATT-ATT-CCCTGC----TATATGCAAGTCGATATATCTTCAATCT----ATTCGATA-CTACAAGAGT--TTGTTCTGCGTATGC----C--AG--CTTTAA----TATCAA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA-TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA--TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTG-TT--A-TGCTATTCTTTTTACATTGATT-----------G-T--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGAGT-CCGTGTTTGCCCAACTCTTG-TTTT---------GTTTTC-T-ATT---TGGGATTT-------ACGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTTAAA-ACAACACACATCACATGAA--TAATGGCA-----C-ACCT-AAAACA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAACT--T----TATGAC-AA---------AC-GAA
gi|12 : A-----------AGACAAA----ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTTGG-AAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGGGT-CTGTGTTTGTC
gi|15 : acaTATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGT----TATGTCacctgatcccactctt
gi|17 : GGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A-TT-AA-ACAACAGGC
gi|2 : GTATATAGATGATGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT--ACG--TTATATATGAT-AAGC-GTGATGAC-TAACTTTGCAA--TCGT------CA-----ACTTT------CCCTTTCTAT-GTAAGTAA-TATACC-ACT-ATC-ACCTGC----T-TATG-GTGT--GTATA---TCTCCCTGTTGATTCGATA-C-GCAAG-GC--ATGCTATGCGTATG-----A--GGACTTTTTT----AA---A-G---CCGGAGGCCAC-T-A-----CTAAC-----------AA-----AAAAGTTCATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA-GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTC-CTTGTTTGCAATTACAAATTATCACTAAGTCA---T--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTT--GACT-ACGG-TAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAGGT-CCGTG-TTGCCCTACACTCGATTTTGGTAATATGGTTTTT-T-TTT---TTGGA-TT-------ATGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-ATT---G-ACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTT-AAAAAACATAGATTGTTAGACAA--GTAACG--------AATAGa
gi|3 : TAGCTTTC--TTA--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATTA-CGGTAATAC-AACAAC-C-ATGCCT----TGTGAC-AA-A-A----GAGAGAATTT--CAGCTTCTC------CA-----ACGTCATCTGTCTATATTCATTGTA-GCAA-CATTCC-ATC-ATC-ACCTGC---------A-AACT--GTGTG---T----------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATGCTACGG--GG--TTTTTTTT--ATTCGG-GG--C---AGGCTAC-T-GGTGATCAAATTGGTATACCGTAATATATG-----CGGTTGTTGCAGTGGTTTCAACAG------------GT-G-GCATTTTCCAAA--TCTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTT-GTAGA---TCGTACTTTATACATGGATTTTGA--CAACAGTT-ATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-T-GTGTGGTCAGGGATACC--GTTTGCCTA--TCTC----TT---------ATTTTT-A-ATC---TG----TT-------ATG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTT-CATTCAATAC-TGT----TGTG--TTATGGTA-----C-AAAT-ACAAAA-----------AGGCGAAG-TAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TAAAT-CGA
gi|4 : tttatcaacaccaatgatacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTC-AAA--TA---TATGACAAA-CGG----GAC-G-ATTT--CCA-TTCTCCATCGTCA-----ACTTC------CCATATTTAT-GTA--CAATTATTCC-ATC-ATCAACCTGCACATT-TGTG-CA-T--GTCTC---TCAACTT----ATTCGATACC-GAAAGAGC--TTGTTCTGCGTATGA----AATAG--TTTTTTG---AATCAAGG---C---AGGCTACTT-A-----CAAAC-----------AA-----G-----T-GTT-TTGCAAGGATTTCAACAGTCACATTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAA-TTAGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTTG-ATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTTTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC--AGAGT---GAGTTGA---GAGTC-CG-T------------GTTTTC-CCATC---TGGGACTTAAATTAAACGA----AACTGGATTCACTG-T---CG-TA-CTTTG----TTT-T-ATTT-AA---------TGATTCAGGAAATTTGTGGCAACTGTC-ATCTAAAAAAA-----------AAACAGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT-G---GT-GGAAAAaaacat
gi|7 : --CGG-TCCTC------CATCATCGCTTC------CCATATTTAC-GTGGGCAG-CAATCC-ATTAATC-GCCC----------TG-A--T--GT-CG---TCAACCG----ATTGAGTA-C-ATGAAAATAGTTGTTCTGTGTAT-------------TTTTTTCACCAATCGA-GAAAC---AGGTTAC-TGA-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGGAT-CAGTGTTTGCCAAAATCCGG--------------ATTTTCAT-ATTGAATAGAACTG-------GCAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-AT
blockSeqs : T T A GTGA TTAATA T A A A A C A T ACTCTA T A T C A GG CG AG C T G A T C A T T A A A . T G A T T TA AGTA T T ACAAT A T A G C T T T TCA CGTTATA A GCGTGAT AGA TG CT CAACGTCATCTGT T AG T . A AA TTATGGTGTGTATATCTCCCTGTTG C . AG CTACGGGGTTTTTTTTATTCGGGGC T GGTGAT TGGTATACCGTAATATATGCG G T T T GTCA A TT T AT TT A ATAT GA A T T A CT A A TTGACAACAGTTA C AA GG G C CAA AGAAGA CA A G T T TG A C AC T CT T A T T CTAC TCGATTTTGGTAATATG CC GAA C AAATTAAACGAAA AT AAG T ACCT A C T GACAATAGTGTCAA A G AT TAT ACTGT A GT A CATAGATTGTT ATA TTGTTGTC G ATAAAAAA A C A GT CA . A A A . A T
blockSeqs : A T . T AAATGG A . A T . . A C CTGG T . . A . . . TT TA TGTG T A AGT A T G A . T . A TC TGCCT . CGG GA . T CATCGTCAACTTC . GG . . . A ACATTTGTGCATGTCTCTCAACTT . . . AAATAGTTTTTTGAATCAAGGC . GA AAAAAAGTTC G T A A GGCA A T . T C T TG . . A . A . . G TGACTACGGTAA C GG G G C G . . . . G T TA A T . . G C . C C AAAA TCTT AT . C ATGATTACGT . . T GC G . C TCATTCAATACTGT T T . TGT . . AA . . AG . T . C C A T C . G
blockSeqs : . . T TTAG T . . T . . . TT CGTT A T TTA T A C A . A . A T AATA . AA TA . T CATCATCGCTTC . G . . . A TGATGTCGTCAACCG . . . TTTTTTCACCAATCGAGAAAC . A AAGT . . . . GTG A . . T T C A AC G G T A . . . . T T AT A C . . G C . C C GAG CGT T . . GCAAGG . . T GT A . T TAATGATTC G A . CG . . TC . . A . . . . . . G G
blockSeqs : T A T . . T . T C CTT . . G . . CAACTTT . . . . . G AAACTGTGTGT . . . AGGACTTTTTTAAAGCCGG . A GT A G . G . . . . T . TA A C . . G C . A C TA CGG A . . ATG . . . G A . T . G .
blockSeqs : . . . . . . . . . T . A . . . . A A . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : TC* CGTT***** G******* GA* CACGTCGCTTT************* G* ACGTGATGTCCCGCCG******************** GGTTTTTTNAATCGGGGC******************* CGT************** A**
originalCons : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACG--T----TATGAC-AA-C-G----GAC-GAATTT--CAG-TTCTC------CA-----ACTTC------CCATATTTAT-GTAAGCAA-CATTCC-ATT-ATC-GCCTGC----T-TATG-AAGT--GTATG---TCAACCT----ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGC----A--GG--TTTTTT----AATCGA-G---C---AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCTCG-TTTT---------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAAGATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
finalCons : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTC-ACGTT-----TATGAC-AAG-------GACGA-ATTT--CAG-TTCTCCACGTCGCTTT-------------CCATATTTAT-GTAG-CAA-CATTCC-ATT-ATC-GCCTGCACGTGATGTCCCGCCG--------------------ATTCGATA-C-GCAAGAGT--TTGTTCTGCGTATGGGTTTTTTNAATCGGGGC-------------------AGGCTAC-T-A-----CAAAC-----------AA-----G-----T-GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCCAANTCCGT--------------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGACAAA--TAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 1111 22222222 1 1 1 2222222 1 11 11 1 1 1111111 33333333 11 3333333 1 44444444444 1111 11 33333333333333333333333333333333333333333333333 11 22222 5555555555 1111 111111 3333333333 88888888888888888 111111 11 1 11 11 3333333 33 1 22 8888888888888888 111 111111 11 1111 6666666666666666666 111 111 22222222222222222 11 111 1111 2222222222222222222 11 22222 1 1 33333333333 22 22222222 33333333 222 11 1 11 11
lowQualScore : 1 3 0 4444 44444444 1 0 3 1 0 0 3 1 0000000 7 2 7 3 7 88 88 77 1 1 1 1 1 1 1 1 1 1 5 1 5 1 1 1 1 1 66 5555 1 1 0 9999999 1 1 1 6 0 0 0 8 1 0 0 8 0 1 0 33333333 11 6666666 0 3 8 11111111111 0 8 6666 8 8 8 22 22222222222222222222222222222222222222222222222 8 8 0 11 00000 3333333333 5555 8 555555 8 9999999999 0 33333333333333333 2 0 3 3 0 3 999999 3 33 0 33 0 77 1 1111111 33 3 3 0 3 7 00 0 7 1 0000000000000000 1 0 77 77 2 5 222 999999 99 6 5 1 0 4 11 1 6 77 5 11 5 6 1 1 3333 1 3333333333333333333 555 444 8 99999999999999999 11 111 7 5555 1 6 1 3333333333333333333 1 1 33 555 55555 0 11 0 88888888888 8 22 0 99999999 0 9 66666666 9 2 3 0 222 00 5 66 7 1 88 1 1
lowQualScore : . . . .... ........ . . . . . . . . ....... . . . . . .. .. .. . . . . . . . . . . . . . . . . . . .. .... . . . ....... . . . . . . . . . . . . . . . ........ .. ....... . . . ........... . . .... . . . .. ............................................... . . . .. ..... .......... .... . ...... . .......... . ................. . . . . . . ...... . .. . .. . .. . ....... .. . . . . . .. . . . ................ . . .. .. . . ... ...... .. . . . . . .. . . .. . .. . . . . .... . ................... ... ... . ................. .. ... . .... . . . ................... . . .. ... ..... . .. . ........... . .. . ........ . . ........ . . . . ... .. . .. . . .. . .
lowQualScore : 0 2 0 8888 00000000 0 0 2 2 0 0 2 0 7777777 3 0 3 7 3 33 33 33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 88 2222 0 0 7 5555555 0 4 0 4 8 8 8 0 4 8 8 0 8 4 8 44444444 00 0000000 6 2 0 66666666666 6 0 4444 0 0 0 66 88888888888888888888888888888888888888888888888 0 0 8 00 00000 4444444444 0000 0 222222 0 0000000000 2 88888888888888888 5 2 2 5 2 5 000000 2 22 0 22 2 00 2 9999999 33 7 7 7 3 3 77 7 3 0 7777777777777777 0 6 00 77 5 2 888 222222 22 7 7 4 7 9 99 4 6 99 7 00 3 7 0 0 2222 0 4444444444444444444 222 000 2 66666666666666666 00 777 3 3333 7 7 7 0000000000000000000 0 2 88 555 00000 0 22 0 00000000000 0 00 8 00000000 8 2 22222222 2 5 2 2 000 88 0 00 3 0 00 0 0
consensus : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTCANG-TT---TATGAC--AA---G---GACGAATTTCAG-TTCTCCAAT-CGTCAA-CTTTCCATATTTA-TGT-AGCAA-CATTCC-ATT-ATC-GCCTGC-A---T----GTGC--------ATGT---------C-TCN---ACCGATTCGATA-C-GCAAGAGT--TTGTTCTGCG-----TATG----AGG--TTTTTT---NA-ATCGAG--GCAGGCTAC-T----A-----CAAACAAGT-C---------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCC-A-ACTC-CG---T------------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGAC-AAA-ATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
Reference ( family-397 ) : TTTTNAACATTATA-GGCAGTTGCT-T--CTTCAACAAT--TGG--AAAAAGGAAATNTTCATATTTAG-TGATCAGTTA-TTCTGAA-AATTACTTTGTTAAACNCCACTCTGGATTCTACGCACAAGTACTCTGAAGTTGGATATTAAAGCAATGCTGGAGTTCCTCGTTGACAGTATATT--TAGT--TTTTGGCGATCAGGTCTTCCAACAACCTGGCAGNATCNTNGCAGTCTTTGGNGATCAGGTCTTCCAACANTNCGTTGGAATTTCCATGGGCACGAACTGTGCTCCTTTGTTAGNTGACCTGTNTTTATATNCTTACGAGGCAGAATTCATTCAAAAGCTTCTANATGAGAGCAAAAAAATNTCTAGCGGNGGCCNTTANTTCNACATNTCGGTATATAGATGATGTNTTANCNATTAACAATCGTAATTTTCATTCA--TATGTCGATTCGATATATCCCAANGAACTAGAAATAAAAGACACCACAGAGTCTNCCATGTCTGCTTCGTATTTGGATATTTTA-TTGAACATTGACATTAACGGCAA-ACTAACAACTCACG-TT---TATGAC--AA---G---GACGAATTTCAG-TTCTCC-A--CGTC-G-CTTTCCATATTTA-TGT-AGCAA-CATTCC-ATT-ATC-GCCTGC-A---C----GTG---------ATGT---------C--CC---GCCGATTCGATA-C-GCAAGAGT--TTGTTCTGCG-----TATG----GG---TTTTTT---NA-ATCGGG--GCAGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTCAACAGTCACGTTTAAA-GT-G-GCATTTCGCAAA-TTCTATGGTCG-TT-TAACAA-TTAGTTTGCCAGTACAATCTGCCATTGAGTCAACGT--GATGCTG-CTGGCGTTTTTCGTAGCAATTG-TTAGA-TGTCGTTCTTTTTACATNGATTT--G--C-ACGG-T-ATCNGTTTACCTTATCGAGACAATGGGNTCAC-GGCGGGTGTGACCGGTC--GACAG------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-GTGTGTCCAGGGGT-CCGTGTTTGCCC-A-ANTC-CG---T------------GTTTTC-T-ATT---TGGGACTT-------ACGA----GATTGA--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTT-AA-ACAACACGCGTCACANGAA--TCGTGGCA-----C-ANCT-AAAAAA-----------AGAC-AA--ATAACG--------AACAGTGATC--------GATCTCGCAAGT-GTAAAT-AGAAAACAAAAGCAAGAGTTGGGNAAACACGGACCCCTGGATACACCAGAGGTGGNATCAGGTGCCTAGTNAAGCCTNGACTGA
gi|1 : TTTTGAATATTATA-GACAGTTGCT-T--CAACAAAAAC---GG--AAAAAGGAAATATTCTTATCTAG-TGATTAGTCA-TTCTAAA-AGTTACTTTGTTAAACACCACT---GATTCTACGCACAAGTATTCTGAAGT-GGATATTAAAGCAATGCTGGAGTTTCTCGTTGACAGTATATT--TAGT--TTTTGGCAATCAGGTCTTCCAACAACCTGGCAAAATCGTTGTAGTCTTTGGTGATCAGGTCTTTCAACAGTATGTTGGAATTTCCATGAGCACGAACTGTGCTCCTTTGTTAACTGACCTGTGTTTATATATTTACGAGGCAGAATTTATTCAAAAGCTTCTACATGAGAAT-AAAAAATCTCTAGCGGAAGCCTTTATTTCGACATATCGGTACA---ATGAT---TTAGCGATTAATAATTGTAATATTTATTCA--TATGTCAATTCGATACATCCCAGGGAACTAGAAATAAAAGACACCACAGAATCCTCCATGTCTGCTTTGTTTTTGGATA-TTTA-TTGAAAATAGACGTAAACGGCAA-ACTAACAACTCA----T---TATGAC--AAC--G---GACG-ATTTCAG-TTCTCTAA--CG--------TCCAGATTTA-T-T-AA-AA-CATTCCTATT-ATT-CCCTGCTA---T----ATGCAAGTCGATATAT---------CTTCA---ATCTATTCGATA-CTACAAGAGT--TTGTTCTGCG-----TATGCC--AG-----CTTT---AATATC-AA--GCAGGCTAC-T----A-----CAAACAAGT-----------------GTTGTTGCAGGGGTTTTGACAGTCACGTTTAAA-TT-GCGCATTTCGC-AA-TTCTATAGTCG-TT---ATAA--TAGTTTGTCAGTACAATCTGCCATTGGGTAAACGTTAAATGCTGTCTGGCGTTTTTCACAGCAATTG-TT--A-TGCTATTCTTTTTACATTGATT-----------G-T--TCAGTTTACCTGATCGAGACAATGGGCTCAC-GGCGGGTTTGACCGGTT--GACAA------G--GGA-TG-CTTACTCCTCCTAGGCACCTGATCCCACC--TCT-G-ATGTGTCTAGGAGT-CCGTGTTTGCCC-A-ACTCTTGTTTT------------GTTTTC-T-ATT---TGGGATTT-------ACGA----GATTGT--TCACTGTT---CGTTATCTTTGC--CTTTAT-ATTTAAA-ACAACACACATCACATGAA--TAATGGCA-----C-ACCT-AAAACA-----------AGAC-AAAGATAACG--------AACAGTGATC--------GATCTCGCAAGTCCTAAAT-AGAAAACAAAAGCAAGAGTTGGGCAAACACGAACCCCTGGATACACCAGAGGTGGTATCAGGTGCCTAGTTAAGCCTGGACTGA
gi|10 : TCCGTTCACTTGATCAAGAGAATGGAACAAC-GGCTTGTGTGACCAGTC--GATGG------G--GGAATG-TTTGCTCCTTCTGGGCACTTGATCCCACC--TCT-G-GTGTATCTAAGcacaaataataaccctgaactga
gi|11 : tcaacaggagttaataattatatcgtctgactatagattacCGATTCAATATATCCCAAAAAACTAGAAATTTAGGACAACACAAAGTATATCATGTCTGCCTCGTACTACG-TATTTTA-TTGAACAATGACATTAAGGGCAA-ACTAACTGCTCAAC-TT---TATGAC--AA--------ACGAA
gi|12 : A-----------AGAC-AA--A--ACG--------AACAGTGAGC--------GAT-TCGC---T-GTAAATCAGAATACAAAA-CAAAAGTTGG-AAAACACGGACCCTTGGATATACC--AGGTGGAATCAGGTGCac
gi|13 : cgTTTAACATTATAAGGCAGTTGCT-T--CTTCAACAAT--TAATAAAGAAAGAAATTTTCATATTTAA-TGATCAGTAA-TTCTGAA-AATTAC
gi|14 : G-CTGACTCCTCCTAGGCACCTGCT-CCACC--TCT-G---GTGTCCACGGGT-CTGTGTTTGTC
gi|15 : acaTATAGATAAAGTATTATCTGTTAACAATCATAATTTTCAGT----TATGTCacctgatcccactctt
gi|17 : GGATACACCAGAGGTGGGATTAGGTGCCT--TAAAGCTTTAATTGAca
gi|18 : CACTGTT---CGTTATATTTGC--CTTTAT-A-TT-AA-ACAACAGGC
gi|2 : GTATATAGATGATGTGTTATCAATTAACAATCATAATTTTCA--CAATTATGTCCATTTGATATATCCCGAAGAACTCGATATATAAGACACCACAGAATCTGACATATCTGCTTCATATTTGGATATTTTACTTAGCCATTGACTCTAATGGCAG-GCTGACAACT-ACG-TTATATATGAT--AA---GCGTGATGACT---AA-CTTTGC-AATCGTCAA-CTTTCCCTTTCTA-TGTAAGTAA-TATACC-ACT-ATC-ACCTGC-T---T----ATG---------GTGTGTATATCTCC--CT---GTTGATTCGATA-C-GCAAG-GC--ATGCTATGCG-----TATG----AGGACTTTTTT---AA-AGCCGG----AGGCCAC-TACTAA-----CAAAAAAGTTC---------------ATAGCTGCAGGGTTTATAAGAATCTCGTTTAAA-GTCA-TCATTTCGCAAA-TTCTACGGTCG-CTATAACTC-CTTGTTTGCAATTACAAATTATCACTAAGTCA---T--GATGTTGACTGATTTGTTTCATACTCTTTGTTTAGACTGTCATTTTTCTTAC-TAGATTT--GACT-ACGG-TAATCCCTTTACTTTATTTTGACTAAGGGGTCACGGGCGGGTGTTACCGGTC----CAG------GCAGGA-TG-TTTACTCCTCCATGGCACTGGATTCTACC--TTC-GCTTTTGT-CGGAGGT-CCGTG-TTGCCCTACACTC-GA---TTTTGGTAATATGGTTTTT-T-TTT---TTGGA-TT-------ATGATTACGTTTGA--CCAATGTTAAGCGTTG-CTTT-----TTTGT-ATT---G-ACAATA-GTGTCAAAAGGA--TCG-GGCA-----CAAGTT-AAAAAACATAGATTGTTAGAC-AA--GTAACG--------AATAGa
gi|3 : TAGCTTTC--TTA--TATGTCGATTTAATGCATCCCTGTGAACTAGAAATAAAAGACGCCAAAACGTGACCAATAACTGATTCGTATTTGGATATTTTA-TTGAACATAGACATT-ACGGTAATAC-AACAAC-CATGCCT---TGTGACAAAA---G---AGAGAATTTCAGCTTCTCCAA--CGTC-ATCTGTCTATATTCATTGT-AGCAA-CATTCC-ATC-ATC-ACCTGC-AAACT----GTG----------TGT---------------------ATTCGATA-C-ACACGAGT--TTATTCTGCGAATGCTACG----GGGT-TTTTTT---TA-TTCGGG--GCAGGCTAC-T----GGTGATCAAATTGGTATACCGTAATATATGCGGTTGTTGCAGTGGTTTCAACAG------------GT-G-GCATTTTCCAAA--TCTATGGTCG-TT-TAAGAATTTAGTTTGCCAGTATAATCTGCCATTGAATCAATAT----TGCT------CAATTTTTGTTGCAATTT-GTAGA---TCGTACTTTATACATGGATTTTGA--CAACAGTT-ATCAGCTTTCCGTGTGAAGGCAATGAACTCAT-GGTGGGT-TGATCGGTC--AACAG------G--GGT-GG-ATTACTCC-CCTAAGCACCTGAT-CCACA--TCT-T-GTGTGGTCAGGGATACC--GTTTGCCT-A-TCTC-T----T------------ATTTTT-A-ATC---TG----TT-------ATG-------TCTA--TCACTGTT---CGTTATC-TTGT--CTTTATCACTT-CATTCAATAC-TGT----TGTG--TTATGGTA-----C-AAAT-ACAAAA-----------AGGCGAA--GTAACATTGTTGTCAAC-GTAATCATAAAAAAGCTCTCGCAAGT--TAAAT-CGA
gi|4 : tttatcaacaccaatgatacTTCA--TATGTCGATTCAATATATCTCAATAAACTAGAAATAAAGGACACCCCAGAGCCTTCCAT-TC-GCTTTGTACTTTGATATTTTA-TTGAACATTAACATTAACGGC-A-ACTACTTACTCAAA-TA---TATGAC--AAACGG---GACG-ATTTCCA-TTCTCC-AT-CGTCAA-CTTCCCATATTTA-TGT-A-CAATTATTCC-ATC-ATCAACCTGC-A---CATTTGTGC--------ATGT---------C--TCTCAACTTATTCGATACC-GAAAGAGC--TTGTTCTGCG-----TATGAAATAG---TTTTTT---GA-ATCAAG--GCAGGCTACTT----A-----CAAACAAGT-----------------GTT-TTGCAAGGATTTCAACAGTCACATTAAAAGGC-A-GCCTTTCGTAAATTTCTATGATCGTTT-TAACAA-TTAGTTTACCAGTATGACCTACCATTGAGTCAA
gi|5 : ACATTATA-GACAGTTGCT-T--CTTCAACAAAAATGG--AAAAGGGAAATATTCATATTTAG-TTATT-GTTA-TTCTAAA-AATTACTTTGTTAAACTTCACTCTA-ATTCTACGTACAAGTACTCTGAAGTTG-ATATTACAGCAATGCTTGAGTTCCTCCTTGACAGCATCTTGGCAGT--TTTTGGAGATCAGGTCTTCCAACAttaa
gi|5 : CTTGACAGCATCTTGGCAGTTTTTGGAGATCAGGTCTTCCAACATTCCGTTGGAATTTCCATGGGCACGAACTGTGCTTCTTTGTTAGATAACCTGTTTTTATATTCTTACGAGGCAGAATTCATTCAAAAGCTTCTAAATGAGAGCAAAAAAATATCTAG-GGTGGCCGTTAATTCTACATTTCGATATATTGATGACGTTTTAACTATTGATAATttccgttggaatttccatgggcacgaactgtgcttctttgttagataacctgtttttatattcttacgaggcagaattcattcaaaagcttctaaatgagagcaaaaaaatatctagggtggccgttaattctacatttcgatatattgatgacgttttaactattgataataaacat
gi|6 : acattatagacagttgcttcttcaacaaaaatggaaaagggaaatattcatatttagttattgttattctaaaaattactttgttaaacttcactctaattctacgtacaagtactctgaagttgatattacagcaatgcttgagttcctcCGGGATAATGG---TAC---CGGTTG-G--CGGTC--GACAAAGAAGAG--GGA-TGGCTTA--------AAAT-CCTGATCCAACCACTCTTG-GTGTGTC--AGAGT---GAGTTGA----G-AGTC-CG---T------------GTTTTC-CCATC---TGGGACTTAAATTAAACGA----AACTGGATTCACTG-T---CG-TA-CTTTG----TTT-T-ATTT-AA---------TGATTCAGGAAATTTGTGGCAACTGTC-ATCTAAAAAAA-----------AAAC-AGATATAACC--------GCTAGTAA-C--------G-TCTCTCAAAT-G---GT-GGAAAAaaacat
gi|7 : CGG-TCCTCC-AT-CATC-G-CTTCCCATATTTA-CGTGGGCAG-CAATCC-ATTAATC-GCCC-------------TG---------ATGT---------CGTCA---ACCGATTGAGTA-C-ATGAAAATAGTTGTTCTGTG-----TAT----------TTTTTTCACCA-ATCGAGAAACAGGTTAC-TG---A-----CAA
gi|8 : aatttattgaacatacatgtaggccgttaccttttgccgcaattcacctacgtaaaatttggcaacaaaatagtattcgTTTTATACATTA-A-AGCAGTTGCTGTGACTTCAACAAT--TAG--AAAAAAAGAATTTTCATATTTTGATGATCAGTTAATTCTGAACAATT-----GTTAAATCCC---CTGGATTATGCACACAAGTACTATGAAATTGAATAT-AAAGCAATGCTGGAGTTCGTCATTGAC--TATATC--TTGTCGTTTTGGTTATCAGGTATTCCAA
gi|9 : aagtcagacacTTAACCTTAGCGAGACATAAGGTTCAC-AGCTGATGTGA--GATTCAAACAG------G--GAA-TG-CT-------------------ATCCC--C--TCT-G-ATATATCAAGGGAT-CAGTGTTTGCCA-A-AATC-CG---G------------ATTTTCAT-ATTGAATAGAACTG-------GCAA----GGTTTA--TC-CTGTT---CATTATCTTTACCTCTTTAT-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCGCTTTTGTCGAGGTACCGTGATGCCTCCCACTCGATTTTGTTACATA
Unaligned ( gi|19 ): TTTGCAAAATAGTCGCACTCTCTTGTGTTAACTTCGCC